0.014570
0.000000
0.000000
0.000000
0.014570
0.000000
0.000000
0.000000
0.011574
0.00000
0.00000
0.00000
Kawazoe, M.
Hori-Takemoto, C.
Kaminishi, T.
Sekine, S.
Shirouzu, M.
Yokoyama, S.
RIKEN Structural Genomics/Proteomics Initiative (RSGI)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
68.634
68.634
86.400
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C10 H17 N6 O13 P3
522.196
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
non-polymer
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
C
N
81
N
O
N
82
N
N
N
83
N
O
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
N
N
95
S
C
N
96
N
C
N
97
N
O
N
98
N
C
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
P
N
124
N
O
N
125
N
O
N
126
N
O
N
127
N
N
N
128
R
P
N
129
N
O
N
130
N
O
N
131
N
O
N
132
S
P
N
133
N
O
N
134
N
O
N
135
N
O
N
136
N
C
N
137
R
C
N
138
N
O
N
139
S
C
N
140
N
O
N
141
R
C
N
142
N
O
N
143
R
C
Y
144
N
N
Y
145
N
C
Y
146
N
N
Y
147
N
C
Y
148
N
C
N
149
N
O
Y
150
N
N
Y
151
N
C
N
152
N
N
Y
153
N
N
Y
154
N
C
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
C
N
173
N
O
N
174
N
C
N
175
N
O
N
176
N
C
N
177
N
O
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
N
N
187
S
C
N
188
N
C
N
189
N
O
N
190
N
C
Y
191
N
C
Y
192
N
N
Y
193
N
C
Y
194
N
C
Y
195
N
N
N
196
N
O
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
O
N
208
N
H
N
209
N
H
N
210
N
N
N
211
S
C
N
212
N
C
N
213
N
O
N
214
S
C
N
215
N
C
N
216
N
C
N
217
N
C
N
218
N
O
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
N
N
233
S
C
N
234
N
C
N
235
N
O
N
236
N
C
N
237
N
C
N
238
N
C
N
239
N
C
N
240
N
O
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
N
N
255
S
C
N
256
N
C
N
257
N
O
N
258
N
C
N
259
N
C
N
260
N
C
N
261
N
C
N
262
N
N
N
263
N
O
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
N
N
280
S
C
N
281
N
C
N
282
N
O
N
283
N
C
N
284
N
C
N
285
N
S
N
286
N
C
N
287
N
O
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
MG
N
300
N
N
N
301
S
C
N
302
N
C
N
303
N
O
N
304
N
C
Y
305
N
C
Y
306
N
C
Y
307
N
C
Y
308
N
C
Y
309
N
C
Y
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
N
N
324
S
C
N
325
N
C
N
326
N
O
N
327
N
C
N
328
N
C
N
329
N
C
N
330
N
O
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
N
N
341
S
C
N
342
N
C
N
343
N
O
N
344
N
C
N
345
N
O
N
346
N
O
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
N
N
355
S
C
N
356
N
C
N
357
N
O
N
358
R
C
N
359
N
O
N
360
N
C
N
361
N
O
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
N
N
372
S
C
N
373
N
C
N
374
N
O
N
375
N
C
Y
376
N
C
Y
377
N
C
Y
378
N
C
Y
379
N
N
Y
380
N
C
Y
381
N
C
Y
382
N
C
Y
383
N
C
Y
384
N
C
N
385
N
O
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
N
N
399
S
C
N
400
N
C
N
401
N
O
N
402
N
C
Y
403
N
C
Y
404
N
C
Y
405
N
C
Y
406
N
C
Y
407
N
C
Y
408
N
C
N
409
N
O
N
410
N
O
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
N
N
423
S
C
N
424
N
C
N
425
N
O
N
426
N
C
N
427
N
C
N
428
N
C
N
429
N
O
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
doub
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
doub
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
Y
151
N
sing
Y
152
N
sing
Y
153
N
doub
N
154
N
sing
Y
155
N
sing
Y
156
N
sing
Y
157
N
doub
N
158
N
doub
Y
159
N
sing
Y
160
N
sing
N
161
N
sing
N
162
N
sing
Y
163
N
doub
N
164
N
sing
N
165
N
sing
Y
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
Y
191
N
sing
Y
192
N
doub
Y
193
N
doub
N
194
N
sing
Y
195
N
sing
N
196
N
sing
Y
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
doub
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
doub
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
doub
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
doub
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
Y
299
N
doub
Y
300
N
sing
Y
301
N
sing
N
302
N
sing
Y
303
N
doub
N
304
N
sing
Y
305
N
doub
N
306
N
sing
Y
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
doub
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
doub
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
doub
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
doub
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
Y
368
N
doub
Y
369
N
sing
Y
370
N
sing
N
371
N
sing
Y
372
N
doub
Y
373
N
sing
Y
374
N
sing
N
375
N
sing
Y
376
N
sing
Y
377
N
doub
N
378
N
sing
Y
379
N
doub
N
380
N
sing
Y
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
doub
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
Y
396
N
doub
Y
397
N
sing
Y
398
N
sing
N
399
N
sing
Y
400
N
doub
N
401
N
sing
Y
402
N
doub
N
403
N
sing
Y
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
doub
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
To be Published
0353
Crystal structure of GTP-binding protein TT1341 from Thermus thermophilus HB8
10.2210/pdb1wf3/pdb
pdb_00001wf3
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
1
CCD
2004-03-25
ADSC QUANTUM 210
Si 111 CHANNEL
SINGLE WAVELENGTH
M
x-ray
1
1.00000
1.0
2.29
1.0
BL44B2
SPring-8
1.00000
SYNCHROTRON
SPRING-8 BEAMLINE BL44B2
2.29
ROTATING ANODE
RIGAKU
33856.191
GTP-binding protein
1
man
polymer
24.305
MAGNESIUM ION
1
syn
non-polymer
522.196
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
1
syn
non-polymer
92.094
GLYCEROL
2
syn
non-polymer
18.015
water
178
nat
water
no
no
MAEKTYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEV
YEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHELLPEAEPRMLSALDERQV
AELKADLLALMPEGPFFYPEDYAKSDQTFGEWVAEILREEAMKRLWHEVPYAVATKVEEVAERENGVLYIKAILYVERPS
QKAIVIGEGGRKIKEIGQATRKQLEALLGKKVYLDLEVKVYPDWRKDPEALRELGYRSSVG
MAEKTYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEV
YEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHELLPEAEPRMLSALDERQV
AELKADLLALMPEGPFFYPEDYAKSDQTFGEWVAEILREEAMKRLWHEVPYAVATKVEEVAERENGVLYIKAILYVERPS
QKAIVIGEGGRKIKEIGQATRKQLEALLGKKVYLDLEVKVYPDWRKDPEALRELGYRSSVG
A
ttk003001341.1
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Thermus
Thermus thermophilus
HB8
Escherichia
Escherichia coli
sample
TT1341
300852
Thermus thermophilus
469008
Escherichia coli BL21(DE3)
BL21(DE3)
PLASMID
pET11b
1
3.0
59.3
VAPOR DIFFUSION, HANGING DROP
9.0
0.1M Bicin, 5% v/v Glycerol, 10% w/v PEG8000, 4% v/v Dioxane, pH 9.0, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K
293.0
RIKEN Structural Genomics/Proteomics Initiative
RSGI
chem_comp_atom
chem_comp_bond
database_2
struct_conn
struct_site
repository
Initial release
Version format compliance
Source and taxonomy
Version format compliance
Data collection
Database references
Derived calculations
1
0
2004-11-25
1
1
2008-04-30
1
2
2011-07-13
1
3
2024-03-13
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
PDBJ
Y
PDBJ
2004-05-25
REL
MG
MAGNESIUM ION
GNP
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
GOL
GLYCEROL
HOH
water
MG
401
2
MG
MG
401
A
GNP
501
3
GNP
GNP
501
A
GOL
601
4
GOL
GOL
601
A
GOL
602
4
GOL
GOL
602
A
HOH
701
5
HOH
HOH
701
A
HOH
702
5
HOH
HOH
702
A
HOH
703
5
HOH
HOH
703
A
HOH
704
5
HOH
HOH
704
A
HOH
705
5
HOH
HOH
705
A
HOH
706
5
HOH
HOH
706
A
HOH
707
5
HOH
HOH
707
A
HOH
708
5
HOH
HOH
708
A
HOH
709
5
HOH
HOH
709
A
HOH
710
5
HOH
HOH
710
A
HOH
711
5
HOH
HOH
711
A
HOH
712
5
HOH
HOH
712
A
HOH
713
5
HOH
HOH
713
A
HOH
714
5
HOH
HOH
714
A
HOH
715
5
HOH
HOH
715
A
HOH
716
5
HOH
HOH
716
A
HOH
717
5
HOH
HOH
717
A
HOH
718
5
HOH
HOH
718
A
HOH
719
5
HOH
HOH
719
A
HOH
720
5
HOH
HOH
720
A
HOH
721
5
HOH
HOH
721
A
HOH
722
5
HOH
HOH
722
A
HOH
723
5
HOH
HOH
723
A
HOH
724
5
HOH
HOH
724
A
HOH
725
5
HOH
HOH
725
A
HOH
726
5
HOH
HOH
726
A
HOH
727
5
HOH
HOH
727
A
HOH
728
5
HOH
HOH
728
A
HOH
729
5
HOH
HOH
729
A
HOH
730
5
HOH
HOH
730
A
HOH
731
5
HOH
HOH
731
A
HOH
732
5
HOH
HOH
732
A
HOH
733
5
HOH
HOH
733
A
HOH
734
5
HOH
HOH
734
A
HOH
735
5
HOH
HOH
735
A
HOH
736
5
HOH
HOH
736
A
HOH
737
5
HOH
HOH
737
A
HOH
738
5
HOH
HOH
738
A
HOH
739
5
HOH
HOH
739
A
HOH
740
5
HOH
HOH
740
A
HOH
741
5
HOH
HOH
741
A
HOH
742
5
HOH
HOH
742
A
HOH
743
5
HOH
HOH
743
A
HOH
744
5
HOH
HOH
744
A
HOH
745
5
HOH
HOH
745
A
HOH
746
5
HOH
HOH
746
A
HOH
747
5
HOH
HOH
747
A
HOH
748
5
HOH
HOH
748
A
HOH
749
5
HOH
HOH
749
A
HOH
750
5
HOH
HOH
750
A
HOH
751
5
HOH
HOH
751
A
HOH
752
5
HOH
HOH
752
A
HOH
753
5
HOH
HOH
753
A
HOH
754
5
HOH
HOH
754
A
HOH
755
5
HOH
HOH
755
A
HOH
756
5
HOH
HOH
756
A
HOH
757
5
HOH
HOH
757
A
HOH
758
5
HOH
HOH
758
A
HOH
759
5
HOH
HOH
759
A
HOH
760
5
HOH
HOH
760
A
HOH
761
5
HOH
HOH
761
A
HOH
762
5
HOH
HOH
762
A
HOH
763
5
HOH
HOH
763
A
HOH
764
5
HOH
HOH
764
A
HOH
765
5
HOH
HOH
765
A
HOH
766
5
HOH
HOH
766
A
HOH
767
5
HOH
HOH
767
A
HOH
768
5
HOH
HOH
768
A
HOH
769
5
HOH
HOH
769
A
HOH
770
5
HOH
HOH
770
A
HOH
771
5
HOH
HOH
771
A
HOH
772
5
HOH
HOH
772
A
HOH
773
5
HOH
HOH
773
A
HOH
774
5
HOH
HOH
774
A
HOH
775
5
HOH
HOH
775
A
HOH
776
5
HOH
HOH
776
A
HOH
777
5
HOH
HOH
777
A
HOH
778
5
HOH
HOH
778
A
HOH
779
5
HOH
HOH
779
A
HOH
780
5
HOH
HOH
780
A
HOH
781
5
HOH
HOH
781
A
HOH
782
5
HOH
HOH
782
A
HOH
783
5
HOH
HOH
783
A
HOH
784
5
HOH
HOH
784
A
HOH
785
5
HOH
HOH
785
A
HOH
786
5
HOH
HOH
786
A
HOH
787
5
HOH
HOH
787
A
HOH
788
5
HOH
HOH
788
A
HOH
789
5
HOH
HOH
789
A
HOH
790
5
HOH
HOH
790
A
HOH
791
5
HOH
HOH
791
A
HOH
792
5
HOH
HOH
792
A
HOH
793
5
HOH
HOH
793
A
HOH
794
5
HOH
HOH
794
A
HOH
795
5
HOH
HOH
795
A
HOH
796
5
HOH
HOH
796
A
HOH
797
5
HOH
HOH
797
A
HOH
798
5
HOH
HOH
798
A
HOH
799
5
HOH
HOH
799
A
HOH
800
5
HOH
HOH
800
A
HOH
801
5
HOH
HOH
801
A
HOH
802
5
HOH
HOH
802
A
HOH
803
5
HOH
HOH
803
A
HOH
804
5
HOH
HOH
804
A
HOH
805
5
HOH
HOH
805
A
HOH
806
5
HOH
HOH
806
A
HOH
807
5
HOH
HOH
807
A
HOH
808
5
HOH
HOH
808
A
HOH
809
5
HOH
HOH
809
A
HOH
810
5
HOH
HOH
810
A
HOH
811
5
HOH
HOH
811
A
HOH
812
5
HOH
HOH
812
A
HOH
813
5
HOH
HOH
813
A
HOH
814
5
HOH
HOH
814
A
HOH
815
5
HOH
HOH
815
A
HOH
816
5
HOH
HOH
816
A
HOH
817
5
HOH
HOH
817
A
HOH
818
5
HOH
HOH
818
A
HOH
819
5
HOH
HOH
819
A
HOH
820
5
HOH
HOH
820
A
HOH
821
5
HOH
HOH
821
A
HOH
822
5
HOH
HOH
822
A
HOH
823
5
HOH
HOH
823
A
HOH
824
5
HOH
HOH
824
A
HOH
825
5
HOH
HOH
825
A
HOH
826
5
HOH
HOH
826
A
HOH
827
5
HOH
HOH
827
A
HOH
828
5
HOH
HOH
828
A
HOH
829
5
HOH
HOH
829
A
HOH
830
5
HOH
HOH
830
A
HOH
831
5
HOH
HOH
831
A
HOH
832
5
HOH
HOH
832
A
HOH
833
5
HOH
HOH
833
A
HOH
834
5
HOH
HOH
834
A
HOH
835
5
HOH
HOH
835
A
HOH
836
5
HOH
HOH
836
A
HOH
837
5
HOH
HOH
837
A
HOH
838
5
HOH
HOH
838
A
HOH
839
5
HOH
HOH
839
A
HOH
840
5
HOH
HOH
840
A
HOH
841
5
HOH
HOH
841
A
HOH
842
5
HOH
HOH
842
A
HOH
843
5
HOH
HOH
843
A
HOH
844
5
HOH
HOH
844
A
HOH
845
5
HOH
HOH
845
A
HOH
846
5
HOH
HOH
846
A
HOH
847
5
HOH
HOH
847
A
HOH
848
5
HOH
HOH
848
A
HOH
849
5
HOH
HOH
849
A
HOH
850
5
HOH
HOH
850
A
HOH
851
5
HOH
HOH
851
A
HOH
852
5
HOH
HOH
852
A
HOH
853
5
HOH
HOH
853
A
HOH
854
5
HOH
HOH
854
A
HOH
855
5
HOH
HOH
855
A
HOH
856
5
HOH
HOH
856
A
HOH
857
5
HOH
HOH
857
A
HOH
858
5
HOH
HOH
858
A
HOH
859
5
HOH
HOH
859
A
HOH
860
5
HOH
HOH
860
A
HOH
861
5
HOH
HOH
861
A
HOH
862
5
HOH
HOH
862
A
HOH
863
5
HOH
HOH
863
A
HOH
864
5
HOH
HOH
864
A
HOH
865
5
HOH
HOH
865
A
HOH
866
5
HOH
HOH
866
A
HOH
867
5
HOH
HOH
867
A
HOH
868
5
HOH
HOH
868
A
HOH
869
5
HOH
HOH
869
A
HOH
870
5
HOH
HOH
870
A
HOH
871
5
HOH
HOH
871
A
HOH
872
5
HOH
HOH
872
A
HOH
873
5
HOH
HOH
873
A
HOH
874
5
HOH
HOH
874
A
HOH
875
5
HOH
HOH
875
A
HOH
876
5
HOH
HOH
876
A
HOH
877
5
HOH
HOH
877
A
HOH
878
5
HOH
HOH
878
A
n
1
1
A
n
2
2
A
GLU
3
n
3
GLU
3
A
LYS
4
n
4
LYS
4
A
THR
5
n
5
THR
5
A
TYR
6
n
6
TYR
6
A
SER
7
n
7
SER
7
A
GLY
8
n
8
GLY
8
A
PHE
9
n
9
PHE
9
A
VAL
10
n
10
VAL
10
A
ALA
11
n
11
ALA
11
A
ILE
12
n
12
ILE
12
A
VAL
13
n
13
VAL
13
A
GLY
14
n
14
GLY
14
A
LYS
15
n
15
LYS
15
A
PRO
16
n
16
PRO
16
A
ASN
17
n
17
ASN
17
A
VAL
18
n
18
VAL
18
A
GLY
19
n
19
GLY
19
A
LYS
20
n
20
LYS
20
A
SER
21
n
21
SER
21
A
THR
22
n
22
THR
22
A
LEU
23
n
23
LEU
23
A
LEU
24
n
24
LEU
24
A
ASN
25
n
25
ASN
25
A
ASN
26
n
26
ASN
26
A
LEU
27
n
27
LEU
27
A
LEU
28
n
28
LEU
28
A
GLY
29
n
29
GLY
29
A
VAL
30
n
30
VAL
30
A
LYS
31
n
31
LYS
31
A
VAL
32
n
32
VAL
32
A
ALA
33
n
33
ALA
33
A
PRO
34
n
34
PRO
34
A
ILE
35
n
35
ILE
35
A
SER
36
n
36
SER
36
A
PRO
37
n
37
PRO
37
A
ARG
38
n
38
ARG
38
A
PRO
39
n
39
PRO
39
A
GLN
40
n
40
GLN
40
A
THR
41
n
41
THR
41
A
THR
42
n
42
THR
42
A
ARG
43
n
43
ARG
43
A
LYS
44
n
44
LYS
44
A
ARG
45
n
45
ARG
45
A
LEU
46
n
46
LEU
46
A
ARG
47
n
47
ARG
47
A
GLY
48
n
48
GLY
48
A
ILE
49
n
49
ILE
49
A
LEU
50
n
50
LEU
50
A
THR
51
n
51
THR
51
A
GLU
52
n
52
GLU
52
A
GLY
53
n
53
GLY
53
A
ARG
54
n
54
ARG
54
A
ARG
55
n
55
ARG
55
A
GLN
56
n
56
GLN
56
A
ILE
57
n
57
ILE
57
A
VAL
58
n
58
VAL
58
A
PHE
59
n
59
PHE
59
A
VAL
60
n
60
VAL
60
A
ASP
61
n
61
ASP
61
A
THR
62
n
62
THR
62
A
PRO
63
n
63
PRO
63
A
GLY
64
n
64
GLY
64
A
LEU
65
n
65
LEU
65
A
HIS
66
n
66
HIS
66
A
LYS
67
n
67
LYS
67
A
PRO
68
n
68
PRO
68
A
MET
69
n
69
MET
69
A
ASP
70
n
70
ASP
70
A
ALA
71
n
71
ALA
71
A
LEU
72
n
72
LEU
72
A
GLY
73
n
73
GLY
73
A
GLU
74
n
74
GLU
74
A
PHE
75
n
75
PHE
75
A
MET
76
n
76
MET
76
A
ASP
77
n
77
ASP
77
A
GLN
78
n
78
GLN
78
A
GLU
79
n
79
GLU
79
A
VAL
80
n
80
VAL
80
A
TYR
81
n
81
TYR
81
A
GLU
82
n
82
GLU
82
A
ALA
83
n
83
ALA
83
A
LEU
84
n
84
LEU
84
A
ALA
85
n
85
ALA
85
A
ASP
86
n
86
ASP
86
A
VAL
87
n
87
VAL
87
A
ASN
88
n
88
ASN
88
A
ALA
89
n
89
ALA
89
A
VAL
90
n
90
VAL
90
A
VAL
91
n
91
VAL
91
A
TRP
92
n
92
TRP
92
A
VAL
93
n
93
VAL
93
A
VAL
94
n
94
VAL
94
A
ASP
95
n
95
ASP
95
A
LEU
96
n
96
LEU
96
A
ARG
97
n
97
ARG
97
A
HIS
98
n
98
HIS
98
A
PRO
99
n
99
PRO
99
A
PRO
100
n
100
PRO
100
A
THR
101
n
101
THR
101
A
PRO
102
n
102
PRO
102
A
GLU
103
n
103
GLU
103
A
ASP
104
n
104
ASP
104
A
GLU
105
n
105
GLU
105
A
LEU
106
n
106
LEU
106
A
VAL
107
n
107
VAL
107
A
ALA
108
n
108
ALA
108
A
ARG
109
n
109
ARG
109
A
ALA
110
n
110
ALA
110
A
LEU
111
n
111
LEU
111
A
LYS
112
n
112
LYS
112
A
PRO
113
n
113
PRO
113
A
LEU
114
n
114
LEU
114
A
VAL
115
n
115
VAL
115
A
GLY
116
n
116
GLY
116
A
LYS
117
n
117
LYS
117
A
VAL
118
n
118
VAL
118
A
PRO
119
n
119
PRO
119
A
ILE
120
n
120
ILE
120
A
LEU
121
n
121
LEU
121
A
LEU
122
n
122
LEU
122
A
VAL
123
n
123
VAL
123
A
GLY
124
n
124
GLY
124
A
ASN
125
n
125
ASN
125
A
LYS
126
n
126
LYS
126
A
LEU
127
n
127
LEU
127
A
ASP
128
n
128
ASP
128
A
ALA
129
n
129
ALA
129
A
ALA
130
n
130
ALA
130
A
LYS
131
n
131
LYS
131
A
TYR
132
n
132
TYR
132
A
PRO
133
n
133
PRO
133
A
GLU
134
n
134
GLU
134
A
GLU
135
n
135
GLU
135
A
ALA
136
n
136
ALA
136
A
MET
137
n
137
MET
137
A
LYS
138
n
138
LYS
138
A
ALA
139
n
139
ALA
139
A
TYR
140
n
140
TYR
140
A
HIS
141
n
141
HIS
141
A
GLU
142
n
142
GLU
142
A
LEU
143
n
143
LEU
143
A
LEU
144
n
144
LEU
144
A
PRO
145
n
145
PRO
145
A
GLU
146
n
146
GLU
146
A
ALA
147
n
147
ALA
147
A
GLU
148
n
148
GLU
148
A
PRO
149
n
149
PRO
149
A
ARG
150
n
150
ARG
150
A
MET
151
n
151
MET
151
A
LEU
152
n
152
LEU
152
A
SER
153
n
153
SER
153
A
ALA
154
n
154
ALA
154
A
LEU
155
n
155
LEU
155
A
ASP
156
n
156
ASP
156
A
GLU
157
n
157
GLU
157
A
ARG
158
n
158
ARG
158
A
GLN
159
n
159
GLN
159
A
VAL
160
n
160
VAL
160
A
ALA
161
n
161
ALA
161
A
GLU
162
n
162
GLU
162
A
LEU
163
n
163
LEU
163
A
LYS
164
n
164
LYS
164
A
ALA
165
n
165
ALA
165
A
ASP
166
n
166
ASP
166
A
LEU
167
n
167
LEU
167
A
LEU
168
n
168
LEU
168
A
ALA
169
n
169
ALA
169
A
LEU
170
n
170
LEU
170
A
MET
171
n
171
MET
171
A
PRO
172
n
172
PRO
172
A
GLU
173
n
173
GLU
173
A
GLY
174
n
174
GLY
174
A
PRO
175
n
175
PRO
175
A
PHE
176
n
176
PHE
176
A
PHE
177
n
177
PHE
177
A
TYR
178
n
178
TYR
178
A
PRO
179
n
179
PRO
179
A
GLU
180
n
180
GLU
180
A
ASP
181
n
181
ASP
181
A
TYR
182
n
182
TYR
182
A
ALA
183
n
183
ALA
183
A
LYS
184
n
184
LYS
184
A
SER
185
n
185
SER
185
A
ASP
186
n
186
ASP
186
A
GLN
187
n
187
GLN
187
A
THR
188
n
188
THR
188
A
PHE
189
n
189
PHE
189
A
GLY
190
n
190
GLY
190
A
GLU
191
n
191
GLU
191
A
TRP
192
n
192
TRP
192
A
VAL
193
n
193
VAL
193
A
ALA
194
n
194
ALA
194
A
GLU
195
n
195
GLU
195
A
ILE
196
n
196
ILE
196
A
LEU
197
n
197
LEU
197
A
ARG
198
n
198
ARG
198
A
GLU
199
n
199
GLU
199
A
GLU
200
n
200
GLU
200
A
ALA
201
n
201
ALA
201
A
MET
202
n
202
MET
202
A
LYS
203
n
203
LYS
203
A
ARG
204
n
204
ARG
204
A
LEU
205
n
205
LEU
205
A
TRP
206
n
206
TRP
206
A
HIS
207
n
207
HIS
207
A
GLU
208
n
208
GLU
208
A
VAL
209
n
209
VAL
209
A
PRO
210
n
210
PRO
210
A
TYR
211
n
211
TYR
211
A
ALA
212
n
212
ALA
212
A
VAL
213
n
213
VAL
213
A
ALA
214
n
214
ALA
214
A
THR
215
n
215
THR
215
A
LYS
216
n
216
LYS
216
A
VAL
217
n
217
VAL
217
A
GLU
218
n
218
GLU
218
A
GLU
219
n
219
GLU
219
A
VAL
220
n
220
VAL
220
A
ALA
221
n
221
ALA
221
A
GLU
222
n
222
GLU
222
A
ARG
223
n
223
ARG
223
A
GLU
224
n
224
GLU
224
A
ASN
225
n
225
ASN
225
A
GLY
226
n
226
GLY
226
A
VAL
227
n
227
VAL
227
A
LEU
228
n
228
LEU
228
A
TYR
229
n
229
TYR
229
A
ILE
230
n
230
ILE
230
A
LYS
231
n
231
LYS
231
A
ALA
232
n
232
ALA
232
A
ILE
233
n
233
ILE
233
A
LEU
234
n
234
LEU
234
A
TYR
235
n
235
TYR
235
A
VAL
236
n
236
VAL
236
A
GLU
237
n
237
GLU
237
A
ARG
238
n
238
ARG
238
A
PRO
239
n
239
PRO
239
A
SER
240
n
240
SER
240
A
GLN
241
n
241
GLN
241
A
LYS
242
n
242
LYS
242
A
ALA
243
n
243
ALA
243
A
ILE
244
n
244
ILE
244
A
VAL
245
n
245
VAL
245
A
ILE
246
n
246
ILE
246
A
GLY
247
n
247
GLY
247
A
GLU
248
n
248
GLU
248
A
GLY
249
n
249
GLY
249
A
GLY
250
n
250
GLY
250
A
ARG
251
n
251
ARG
251
A
LYS
252
n
252
LYS
252
A
ILE
253
n
253
ILE
253
A
LYS
254
n
254
LYS
254
A
GLU
255
n
255
GLU
255
A
ILE
256
n
256
ILE
256
A
GLY
257
n
257
GLY
257
A
GLN
258
n
258
GLN
258
A
ALA
259
n
259
ALA
259
A
THR
260
n
260
THR
260
A
ARG
261
n
261
ARG
261
A
LYS
262
n
262
LYS
262
A
GLN
263
n
263
GLN
263
A
LEU
264
n
264
LEU
264
A
GLU
265
n
265
GLU
265
A
ALA
266
n
266
ALA
266
A
LEU
267
n
267
LEU
267
A
LEU
268
n
268
LEU
268
A
GLY
269
n
269
GLY
269
A
LYS
270
n
270
LYS
270
A
LYS
271
n
271
LYS
271
A
VAL
272
n
272
VAL
272
A
TYR
273
n
273
TYR
273
A
LEU
274
n
274
LEU
274
A
ASP
275
n
275
ASP
275
A
LEU
276
n
276
LEU
276
A
GLU
277
n
277
GLU
277
A
VAL
278
n
278
VAL
278
A
LYS
279
n
279
LYS
279
A
VAL
280
n
280
VAL
280
A
TYR
281
n
281
TYR
281
A
PRO
282
n
282
PRO
282
A
ASP
283
n
283
ASP
283
A
TRP
284
n
284
TRP
284
A
ARG
285
n
285
ARG
285
A
LYS
286
n
286
LYS
286
A
ASP
287
n
287
ASP
287
A
PRO
288
n
288
PRO
288
A
GLU
289
n
289
GLU
289
A
ALA
290
n
290
ALA
290
A
LEU
291
n
291
LEU
291
A
ARG
292
n
292
ARG
292
A
GLU
293
n
293
GLU
293
A
LEU
294
n
294
LEU
294
A
GLY
295
n
295
GLY
295
A
TYR
296
n
296
TYR
296
A
ARG
297
n
297
ARG
297
A
SER
298
n
298
SER
298
A
n
299
299
A
n
300
300
A
n
301
301
A
author_defined_assembly
1
monomeric
A
SER
21
A
OG
SER
21
1_555
A
MG
401
B
MG
MG
1_555
A
THR
42
A
OG1
THR
42
1_555
85.4
A
SER
21
A
OG
SER
21
1_555
A
MG
401
B
MG
MG
1_555
A
GNP
501
C
O2G
GNP
1_555
171.3
A
THR
42
A
OG1
THR
42
1_555
A
MG
401
B
MG
MG
1_555
A
GNP
501
C
O2G
GNP
1_555
86.9
A
SER
21
A
OG
SER
21
1_555
A
MG
401
B
MG
MG
1_555
A
GNP
501
C
O2B
GNP
1_555
94.4
A
THR
42
A
OG1
THR
42
1_555
A
MG
401
B
MG
MG
1_555
A
GNP
501
C
O2B
GNP
1_555
175.2
A
GNP
501
C
O2G
GNP
1_555
A
MG
401
B
MG
MG
1_555
A
GNP
501
C
O2B
GNP
1_555
93.6
A
SER
21
A
OG
SER
21
1_555
A
MG
401
B
MG
MG
1_555
A
HOH
701
F
O
HOH
1_555
87.5
A
THR
42
A
OG1
THR
42
1_555
A
MG
401
B
MG
MG
1_555
A
HOH
701
F
O
HOH
1_555
86.3
A
GNP
501
C
O2G
GNP
1_555
A
MG
401
B
MG
MG
1_555
A
HOH
701
F
O
HOH
1_555
96.0
A
GNP
501
C
O2B
GNP
1_555
A
MG
401
B
MG
MG
1_555
A
HOH
701
F
O
HOH
1_555
88.9
A
SER
21
A
OG
SER
21
1_555
A
MG
401
B
MG
MG
1_555
A
HOH
702
F
O
HOH
1_555
85.1
A
THR
42
A
OG1
THR
42
1_555
A
MG
401
B
MG
MG
1_555
A
HOH
702
F
O
HOH
1_555
94.5
A
GNP
501
C
O2G
GNP
1_555
A
MG
401
B
MG
MG
1_555
A
HOH
702
F
O
HOH
1_555
91.5
A
GNP
501
C
O2B
GNP
1_555
A
MG
401
B
MG
MG
1_555
A
HOH
702
F
O
HOH
1_555
90.3
A
HOH
701
F
O
HOH
1_555
A
MG
401
B
MG
MG
1_555
A
HOH
702
F
O
HOH
1_555
172.4
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLY
48
A
N
GLY
48
A
O
PHE
59
A
O
PHE
59
A
O
VAL
58
A
O
VAL
58
A
N
GLY
8
A
N
GLY
8
A
N
VAL
13
A
N
VAL
13
A
O
VAL
93
A
O
VAL
93
A
N
VAL
94
A
N
VAL
94
A
O
ASN
125
A
O
ASN
125
A
N
GLY
124
A
N
GLY
124
A
O
ARG
150
A
O
ARG
150
A
N
ALA
221
A
N
ALA
221
A
O
TYR
229
A
O
TYR
229
A
N
LEU
234
A
N
LEU
234
A
O
GLU
277
A
O
GLU
277
1
A
MET
1
A
MET
1
1
Y
1
A
ALA
2
A
ALA
2
1
Y
1
A
SER
299
A
SER
299
1
Y
1
A
VAL
300
A
VAL
300
1
Y
1
A
GLY
301
A
GLY
301
1
Y
1
9.27
1.50
119.30
128.57
A
A
A
C
N
CA
ARG
PRO
PRO
38
39
39
Y
1
A
PRO
39
-63.46
31.71
1
A
GLN
40
-174.71
65.44
1
A
LEU
144
-158.41
73.57
1
A
HIS
207
63.45
-126.81
1
A
GLU
224
21.59
-130.86
1
A
PRO
282
-29.29
107.46
1
A
ASP
283
33.67
51.24
PROTEIN_REP.PARAM
PROTEIN.TOP
GNP_XPLOR_PAR.TXT
GOL_CNS_TOP.TXT
ION.PARAM
WATER.TOP
WATER_REP.PARAM
ION.TOP
GOL_CNS_PAR.TXT
GNP_XPLOR_TOP.TXT
41.8
3.21
0.00
0.00
3.21
0.00
-6.41
0.227
0.006
0.2
0.2
1.88
31.89
1609
32440
5.0
99.4
RANDOM
1227309.63
0.000000
1
RESTRAINED
THROUGHOUT
0.0
SAD
FLAT MODEL
49.1152
0.375803
0.26
0.22
5.00
0.19
0.15
1.88
31.89
178
2576
45
0
2353
0.008
1.4
22.6
0.95
1.38
1.50
2.12
2.00
2.08
2.00
3.16
2.50
0.275
0.015
0.244
2.00
327
5093
6
6.0
100.0
28.3
1.88
31.9
1WF3
32500
-3
1
7.53932
99.5
1.88
1.95
0.66
1
100.0
refinement
CNS
1.1
data reduction
HKL-2000
data scaling
SCALEPACK
phasing
SOLVE
Crystal structure of GTP-binding protein TT1341 from Thermus thermophilus HB8
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
5
N
N
A
GLY
19
A
GLY
19
HELX_P
A
GLY
29
A
GLY
29
1
1
11
A
ASP
70
A
ASP
70
HELX_P
A
LEU
84
A
LEU
84
1
2
15
A
THR
101
A
THR
101
HELX_P
A
LYS
112
A
LYS
112
1
3
12
A
PRO
113
A
PRO
113
HELX_P
A
VAL
115
A
VAL
115
5
4
3
A
LYS
126
A
LYS
126
HELX_P
A
ALA
130
A
ALA
130
5
5
5
A
TYR
132
A
TYR
132
HELX_P
A
LEU
143
A
LEU
143
1
6
12
A
ASP
156
A
ASP
156
HELX_P
A
ALA
169
A
ALA
169
1
7
14
A
THR
188
A
THR
188
HELX_P
A
ARG
204
A
ARG
204
1
8
17
A
GLU
208
A
GLU
208
HELX_P
A
VAL
213
A
VAL
213
1
9
6
A
ARG
238
A
ARG
238
HELX_P
A
GLY
247
A
GLY
247
1
10
10
A
GLY
250
A
GLY
250
HELX_P
A
GLY
269
A
GLY
269
1
11
20
A
ASP
283
A
ASP
283
HELX_P
A
LYS
286
A
LYS
286
5
12
4
A
ASP
287
A
ASP
287
HELX_P
A
GLY
295
A
GLY
295
1
13
9
metalc
2.163
A
SER
21
A
OG
SER
21
1_555
A
MG
401
B
MG
MG
1_555
metalc
2.179
A
THR
42
A
OG1
THR
42
1_555
A
MG
401
B
MG
MG
1_555
metalc
2.072
A
MG
401
B
MG
MG
1_555
A
GNP
501
C
O2G
GNP
1_555
metalc
2.087
A
MG
401
B
MG
MG
1_555
A
GNP
501
C
O2B
GNP
1_555
metalc
2.198
A
MG
401
B
MG
MG
1_555
A
HOH
701
F
O
HOH
1_555
metalc
2.207
A
MG
401
B
MG
MG
1_555
A
HOH
702
F
O
HOH
1_555
HYDROLASE
GTP-binding protein, GTPase, RIKEN Structural Genomics/Proteomics Initiative, RSGI, Structural Genomics, Hydrolase
Q5SM23_THET8
UNP
1
Q5SM23
1
301
1WF3
1
301
Q5SM23
A
1
1
301
6
3
anti-parallel
parallel
parallel
parallel
parallel
anti-parallel
parallel
A
LEU
46
A
LEU
46
A
GLU
52
A
GLU
52
A
ARG
55
A
ARG
55
A
ASP
61
A
ASP
61
A
TYR
6
A
TYR
6
A
VAL
13
A
VAL
13
A
ALA
89
A
ALA
89
A
ASP
95
A
ASP
95
A
ILE
120
A
ILE
120
A
ASN
125
A
ASN
125
A
GLU
148
A
GLU
148
A
MET
151
A
MET
151
A
ALA
214
A
ALA
214
A
ARG
223
A
ARG
223
A
VAL
227
A
VAL
227
A
VAL
236
A
VAL
236
A
LYS
271
A
LYS
271
A
VAL
280
A
VAL
280
BINDING SITE FOR RESIDUE MG A 401
A
MG
401
Software
5
BINDING SITE FOR RESIDUE GNP A 501
A
GNP
501
Software
27
BINDING SITE FOR RESIDUE GOL A 601
A
GOL
601
Software
7
BINDING SITE FOR RESIDUE GOL A 602
A
GOL
602
Software
9
A
SER
21
A
SER
21
5
1_555
A
THR
42
A
THR
42
5
1_555
A
GNP
501
C
GNP
5
1_555
A
HOH
701
F
HOH
5
1_555
A
HOH
702
F
HOH
5
1_555
A
PRO
16
A
PRO
16
27
1_555
A
ASN
17
A
ASN
17
27
1_555
A
VAL
18
A
VAL
18
27
1_555
A
GLY
19
A
GLY
19
27
1_555
A
LYS
20
A
LYS
20
27
1_555
A
SER
21
A
SER
21
27
1_555
A
THR
22
A
THR
22
27
1_555
A
ILE
35
A
ILE
35
27
1_555
A
SER
36
A
SER
36
27
1_555
A
PRO
37
A
PRO
37
27
1_555
A
GLN
40
A
GLN
40
27
1_555
A
THR
41
A
THR
41
27
1_555
A
THR
42
A
THR
42
27
1_555
A
GLY
64
A
GLY
64
27
1_555
A
ASN
125
A
ASN
125
27
1_555
A
LYS
126
A
LYS
126
27
1_555
A
ASP
128
A
ASP
128
27
1_555
A
SER
153
A
SER
153
27
1_555
A
ALA
154
A
ALA
154
27
1_555
A
MG
401
B
MG
27
1_555
A
HOH
701
F
HOH
27
1_555
A
HOH
702
F
HOH
27
1_555
A
HOH
703
F
HOH
27
1_555
A
HOH
704
F
HOH
27
1_555
A
HOH
737
F
HOH
27
1_555
A
HOH
750
F
HOH
27
1_555
A
HOH
766
F
HOH
27
1_555
A
ASP
77
A
ASP
77
7
1_555
A
TYR
81
A
TYR
81
7
1_555
A
ALA
110
A
ALA
110
7
1_555
A
LYS
271
A
LYS
271
7
2_765
A
HOH
796
F
HOH
7
1_555
A
HOH
819
F
HOH
7
1_555
A
HOH
820
F
HOH
7
1_555
A
LYS
44
A
LYS
44
9
1_555
A
LEU
294
A
LEU
294
9
1_555
A
GLY
295
A
GLY
295
9
1_555
A
TYR
296
A
TYR
296
9
1_555
A
HOH
726
F
HOH
9
1_555
A
HOH
727
F
HOH
9
1_555
A
HOH
787
F
HOH
9
1_555
A
HOH
795
F
HOH
9
1_555
A
HOH
816
F
HOH
9
1_555
76
P 41