1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
He, F.
Hanaki, K.
Muto, Y.
Inoue, M.
Kigawa, T.
Shirouzu, M.
Terada, T.
Yokoyama, S.
RIKEN Structural Genomics/Proteomics Initiative (RSGI)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be Published
0353
Solution structure of PDZ domain in protein XP_110852
10.2210/pdb1wg6/pdb
pdb_00001wg6
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
13351.096
HYPOTHETICAL PROTEIN (RIKEN cDNA 2810455B10)
PDZ domain
1
man
polymer
no
no
GSSGSSGLKGEPDCYALSLESSEQLTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQL
IAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRRSGPSSG
GSSGSSGLKGEPDCYALSLESSEQLTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQL
IAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRRSGPSSG
A
mmt007007474.1
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
house mouse
Mus
sample
Cell free protein synthesis
RIKEN cDNA 2010002N16
10090
Mus musculus
PLASMID
P030407-A03
RIKEN Structural Genomics/Proteomics Initiative
RSGI
database_2
pdbx_nmr_software
pdbx_nmr_spectrometer
pdbx_struct_assembly
pdbx_struct_oper_list
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2004-11-27
1
1
2008-04-30
1
2
2011-07-13
1
3
2022-03-02
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_pdbx_nmr_spectrometer.model
_struct_ref_seq_dif.details
Y
PDBJ
Y
PDBJ
2004-05-27
REL
structures with the least restraint violations, structures with the lowest energy, target function
100
20
3D_15N-separated_NOESY
3D_13C-separated_NOESY
120mM
6.0
ambient
298
K
torsion angle dynamics
1
lowest energy
0.8mM U-15,13C; 20mM phosphate buffer NA; 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 90% H2O, 10% D2O
90% H2O/10% D2O
Bruker
collection
XwinNMR
2.6
Delaglio,F.
processing
NMRPipe
20020425
Johnson,B.A.
data analysis
NMRView
5.0.4
Cobayashi,N.
data analysis
KUJIRA
0.863
Guentert,P.
structure solution
CYANA
1.0.8
Guentert,P.
refinement
CYANA
1.0.8
800
Bruker
AVANCE
GLY
1
n
1
GLY
1
A
SER
2
n
2
SER
2
A
SER
3
n
3
SER
3
A
GLY
4
n
4
GLY
4
A
SER
5
n
5
SER
5
A
SER
6
n
6
SER
6
A
GLY
7
n
7
GLY
7
A
LEU
8
n
8
LEU
8
A
LYS
9
n
9
LYS
9
A
GLY
10
n
10
GLY
10
A
GLU
11
n
11
GLU
11
A
PRO
12
n
12
PRO
12
A
ASP
13
n
13
ASP
13
A
CYS
14
n
14
CYS
14
A
TYR
15
n
15
TYR
15
A
ALA
16
n
16
ALA
16
A
LEU
17
n
17
LEU
17
A
SER
18
n
18
SER
18
A
LEU
19
n
19
LEU
19
A
GLU
20
n
20
GLU
20
A
SER
21
n
21
SER
21
A
SER
22
n
22
SER
22
A
GLU
23
n
23
GLU
23
A
GLN
24
n
24
GLN
24
A
LEU
25
n
25
LEU
25
A
THR
26
n
26
THR
26
A
LEU
27
n
27
LEU
27
A
GLU
28
n
28
GLU
28
A
ILE
29
n
29
ILE
29
A
PRO
30
n
30
PRO
30
A
LEU
31
n
31
LEU
31
A
ASN
32
n
32
ASN
32
A
ASP
33
n
33
ASP
33
A
SER
34
n
34
SER
34
A
GLY
35
n
35
GLY
35
A
SER
36
n
36
SER
36
A
ALA
37
n
37
ALA
37
A
GLY
38
n
38
GLY
38
A
LEU
39
n
39
LEU
39
A
GLY
40
n
40
GLY
40
A
VAL
41
n
41
VAL
41
A
SER
42
n
42
SER
42
A
LEU
43
n
43
LEU
43
A
LYS
44
n
44
LYS
44
A
GLY
45
n
45
GLY
45
A
ASN
46
n
46
ASN
46
A
LYS
47
n
47
LYS
47
A
SER
48
n
48
SER
48
A
ARG
49
n
49
ARG
49
A
GLU
50
n
50
GLU
50
A
THR
51
n
51
THR
51
A
GLY
52
n
52
GLY
52
A
THR
53
n
53
THR
53
A
ASP
54
n
54
ASP
54
A
LEU
55
n
55
LEU
55
A
GLY
56
n
56
GLY
56
A
ILE
57
n
57
ILE
57
A
PHE
58
n
58
PHE
58
A
ILE
59
n
59
ILE
59
A
LYS
60
n
60
LYS
60
A
SER
61
n
61
SER
61
A
ILE
62
n
62
ILE
62
A
ILE
63
n
63
ILE
63
A
HIS
64
n
64
HIS
64
A
GLY
65
n
65
GLY
65
A
GLY
66
n
66
GLY
66
A
ALA
67
n
67
ALA
67
A
ALA
68
n
68
ALA
68
A
PHE
69
n
69
PHE
69
A
LYS
70
n
70
LYS
70
A
ASP
71
n
71
ASP
71
A
GLY
72
n
72
GLY
72
A
ARG
73
n
73
ARG
73
A
LEU
74
n
74
LEU
74
A
ARG
75
n
75
ARG
75
A
MET
76
n
76
MET
76
A
ASN
77
n
77
ASN
77
A
ASP
78
n
78
ASP
78
A
GLN
79
n
79
GLN
79
A
LEU
80
n
80
LEU
80
A
ILE
81
n
81
ILE
81
A
ALA
82
n
82
ALA
82
A
VAL
83
n
83
VAL
83
A
ASN
84
n
84
ASN
84
A
GLY
85
n
85
GLY
85
A
GLU
86
n
86
GLU
86
A
THR
87
n
87
THR
87
A
LEU
88
n
88
LEU
88
A
LEU
89
n
89
LEU
89
A
GLY
90
n
90
GLY
90
A
LYS
91
n
91
LYS
91
A
SER
92
n
92
SER
92
A
ASN
93
n
93
ASN
93
A
HIS
94
n
94
HIS
94
A
GLU
95
n
95
GLU
95
A
ALA
96
n
96
ALA
96
A
MET
97
n
97
MET
97
A
GLU
98
n
98
GLU
98
A
THR
99
n
99
THR
99
A
LEU
100
n
100
LEU
100
A
ARG
101
n
101
ARG
101
A
ARG
102
n
102
ARG
102
A
SER
103
n
103
SER
103
A
MET
104
n
104
MET
104
A
SER
105
n
105
SER
105
A
MET
106
n
106
MET
106
A
GLU
107
n
107
GLU
107
A
GLY
108
n
108
GLY
108
A
ASN
109
n
109
ASN
109
A
ILE
110
n
110
ILE
110
A
ARG
111
n
111
ARG
111
A
GLY
112
n
112
GLY
112
A
MET
113
n
113
MET
113
A
ILE
114
n
114
ILE
114
A
GLN
115
n
115
GLN
115
A
LEU
116
n
116
LEU
116
A
VAL
117
n
117
VAL
117
A
ILE
118
n
118
ILE
118
A
LEU
119
n
119
LEU
119
A
ARG
120
n
120
ARG
120
A
ARG
121
n
121
ARG
121
A
SER
122
n
122
SER
122
A
GLY
123
n
123
GLY
123
A
PRO
124
n
124
PRO
124
A
SER
125
n
125
SER
125
A
SER
126
n
126
SER
126
A
GLY
127
n
127
GLY
127
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
29
A
N
ILE
29
A
O
ILE
114
A
O
ILE
114
A
O
VAL
117
A
O
VAL
117
A
N
ILE
81
A
N
ILE
81
A
N
VAL
83
A
N
VAL
83
A
O
GLU
86
A
O
GLU
86
A
N
LYS
44
A
N
LYS
44
A
O
PHE
58
A
O
PHE
58
1
A
A
O
H
ILE
ASN
59
77
1.49
1
A
A
H
O
LEU
GLY
31
112
1.49
1
A
A
O
H
SER
GLY
34
38
1.59
2
A
A
O
H
ARG
MET
102
106
1.49
2
A
A
H
O
LYS
PHE
44
58
1.50
2
A
A
O
H
ILE
ASN
59
77
1.51
2
A
A
O
H
SER
GLY
34
38
1.51
2
A
A
H
O
LEU
GLY
31
112
1.52
3
A
A
O
H
ILE
ASN
59
77
1.54
3
A
A
H
O
LYS
PHE
44
58
1.56
4
A
A
O
H
ARG
MET
102
106
1.55
4
A
A
O
H
ILE
ASN
59
77
1.58
4
A
A
O
H
HIS
GLU
94
98
1.59
5
A
A
O
H
MET
ASN
106
109
1.55
5
A
A
H
O
LEU
GLY
31
112
1.56
6
A
A
O
H
THR
SER
99
103
1.52
6
A
A
O
H
SER
GLY
34
38
1.53
6
A
A
O
H
ARG
MET
102
106
1.54
7
A
A
O
H
ILE
ASN
59
77
1.51
7
A
A
O
H
ILE
ILE
29
114
1.54
7
A
A
O
H
THR
SER
99
103
1.55
7
A
A
H
O
ILE
ILE
29
114
1.55
7
A
A
H
O
LYS
PHE
44
58
1.57
7
A
A
O
H
SER
GLY
34
38
1.59
8
A
A
O
H
ARG
MET
102
106
1.44
8
A
A
O
H
THR
SER
99
103
1.59
8
A
A
O
H
ILE
ASN
59
77
1.59
9
A
A
O
H
ARG
MET
102
106
1.50
9
A
A
OD1
H
ASN
GLN
84
115
1.57
9
A
A
H
O
LYS
PHE
44
58
1.59
10
A
A
O
H
SER
GLY
34
38
1.51
10
A
A
H
O
LYS
PHE
44
58
1.51
10
A
A
O
H
GLU
THR
95
99
1.57
10
A
A
O
H
ILE
ASN
59
77
1.58
10
A
A
H
O
ILE
ILE
29
114
1.58
11
A
A
H
O
LEU
GLY
31
112
1.47
11
A
A
O
H
ILE
ASN
59
77
1.51
11
A
A
O
H
SER
GLY
34
38
1.54
11
A
A
OD1
H
ASN
ASP
32
33
1.60
12
A
A
O
H
SER
GLY
34
38
1.53
12
A
A
O
H
ILE
ASN
59
77
1.56
13
A
A
O
H
ARG
MET
102
106
1.55
13
A
A
O
H
GLU
ARG
23
120
1.55
13
A
A
H
O
LYS
PHE
44
58
1.58
14
A
A
O
H
HIS
GLU
94
98
1.53
14
A
A
H
O
LEU
GLY
31
112
1.55
14
A
A
O
H
SER
GLY
34
38
1.56
14
A
A
O
H
ILE
ASN
59
77
1.57
15
A
A
H
O
LEU
GLY
31
112
1.49
15
A
A
O
H
MET
ASN
106
109
1.53
15
A
A
OD1
H
ASN
ASP
32
33
1.58
16
A
A
O
H
ILE
ASN
59
77
1.51
16
A
A
H
O
LEU
GLY
31
112
1.51
16
A
A
O
H
SER
GLU
103
107
1.52
16
A
A
H
O
LYS
PHE
44
58
1.52
16
A
A
OD1
H
ASN
ASP
32
33
1.56
16
A
A
O
H
GLU
THR
95
99
1.59
16
A
A
OD1
H
ASN
GLN
84
115
1.60
17
A
A
O
H
SER
GLY
34
38
1.52
17
A
A
O
H
MET
ASN
106
109
1.57
17
A
A
OD1
H
ASN
ASP
32
33
1.57
17
A
A
O
H
GLU
ARG
23
120
1.58
17
A
A
O
H
ILE
ASN
59
77
1.58
17
A
A
H
O
LEU
GLY
31
112
1.58
18
A
A
O
H
SER
GLU
103
107
1.53
18
A
A
O
H
ILE
ASN
59
77
1.54
18
A
A
H
O
LYS
PHE
44
58
1.55
18
A
A
H
O
LEU
GLY
31
112
1.56
18
A
A
O
H
SER
GLY
34
38
1.58
19
A
A
O
H
SER
GLY
34
38
1.52
19
A
A
O
H
MET
ASN
106
109
1.53
19
A
A
O
H
ILE
ASN
59
77
1.55
20
A
A
O
H
ARG
MET
102
106
1.50
20
A
A
O
H
SER
GLY
34
38
1.54
20
A
A
O
H
THR
SER
99
103
1.56
20
A
A
H
O
LYS
PHE
44
58
1.58
20
A
A
O
H
VAL
GLU
83
86
1.59
1
A
SER
2
64.42
109.87
1
A
SER
3
178.28
132.92
1
A
LEU
8
67.13
130.16
1
A
GLU
11
63.66
93.21
1
A
ASP
13
178.03
146.68
1
A
TYR
15
-173.56
131.43
1
A
LEU
17
-123.84
-59.80
1
A
SER
22
-47.78
153.30
1
A
THR
53
-122.54
-164.22
1
A
SER
61
178.00
139.13
1
A
HIS
64
-53.10
-175.65
1
A
ARG
73
-37.84
-29.99
1
A
LEU
74
-67.45
-174.03
1
A
MET
76
-49.13
173.62
1
A
ALA
82
178.07
-176.02
1
A
VAL
83
-171.87
114.06
1
A
HIS
94
-61.92
-71.91
1
A
LEU
100
-45.84
-74.07
1
A
ARG
111
-87.18
-70.70
1
A
ARG
121
-45.75
167.05
1
A
SER
125
39.70
78.05
2
A
SER
2
-136.09
-58.40
2
A
SER
3
57.78
160.14
2
A
SER
5
-178.43
129.11
2
A
LEU
8
-167.71
-68.65
2
A
LYS
9
68.79
146.57
2
A
ASP
13
179.97
-62.61
2
A
CYS
14
64.19
104.34
2
A
TYR
15
-168.57
-42.60
2
A
ALA
16
64.61
164.34
2
A
LEU
17
-69.28
-107.67
2
A
LEU
19
-153.23
-46.43
2
A
SER
21
81.66
-51.75
2
A
SER
22
60.18
-178.49
2
A
LEU
39
-39.40
-70.80
2
A
SER
61
-175.40
145.05
2
A
HIS
64
-57.91
-178.78
2
A
ARG
73
-37.49
-30.48
2
A
MET
76
-46.45
173.72
2
A
ALA
82
163.08
166.26
2
A
ASN
84
57.54
18.60
2
A
LYS
91
-87.75
-141.22
2
A
SER
92
-139.06
-150.16
2
A
LEU
100
-39.73
-71.04
2
A
ARG
111
-83.98
-71.63
3
A
SER
5
-168.82
82.10
3
A
SER
6
74.70
-59.02
3
A
LYS
9
-171.14
67.13
3
A
GLU
11
-174.07
144.21
3
A
ASP
13
81.52
-65.11
3
A
CYS
14
79.04
-62.52
3
A
ASN
32
-92.18
-62.02
3
A
ARG
73
-38.14
-30.19
3
A
LEU
74
-64.33
-175.26
3
A
MET
76
-43.46
167.83
3
A
ALA
82
162.26
159.23
3
A
ASN
84
49.35
22.73
3
A
LYS
91
-88.89
-153.14
3
A
SER
92
-132.83
-150.40
3
A
ARG
111
-95.32
-72.25
3
A
SER
125
57.50
165.21
3
A
SER
126
40.64
78.71
4
A
SER
2
-172.27
128.89
4
A
SER
3
176.76
168.48
4
A
SER
5
-163.12
117.11
4
A
LEU
8
-147.86
-67.53
4
A
ASP
13
73.90
89.99
4
A
LEU
17
-124.09
-107.75
4
A
LEU
19
-135.12
-47.95
4
A
SER
22
-54.10
172.52
4
A
HIS
64
-57.98
-179.63
4
A
ARG
73
-38.97
-29.40
4
A
MET
76
-43.11
167.49
4
A
ALA
82
168.08
171.16
4
A
ASN
84
56.71
18.40
4
A
SER
92
-113.01
-159.15
4
A
ALA
96
-40.07
-71.86
4
A
ARG
111
-87.69
-71.85
4
A
ARG
121
-88.54
-78.38
5
A
SER
3
63.55
149.07
5
A
LEU
8
-145.77
-69.14
5
A
LYS
9
66.26
120.21
5
A
GLU
11
62.01
141.22
5
A
ASP
13
60.57
105.06
5
A
CYS
14
172.09
117.43
5
A
SER
18
68.33
-70.46
5
A
LEU
19
81.86
-70.71
5
A
LEU
31
-113.65
55.65
5
A
LEU
39
-40.21
-71.05
5
A
MET
76
-39.98
161.60
5
A
ASN
77
75.12
39.73
5
A
ALA
82
-177.20
-178.50
5
A
VAL
83
-165.63
116.15
5
A
HIS
94
-64.23
-73.44
5
A
LEU
100
-43.94
-74.32
5
A
ARG
111
-95.75
-73.26
5
A
SER
125
45.52
82.32
6
A
SER
2
177.89
137.30
6
A
SER
5
177.07
125.43
6
A
SER
6
177.88
169.75
6
A
LEU
8
-175.52
127.47
6
A
ASP
13
61.46
111.64
6
A
SER
18
63.63
165.50
6
A
SER
21
66.49
-175.05
6
A
SER
22
-56.73
171.28
6
A
THR
53
-140.48
-151.75
6
A
SER
61
-176.86
130.53
6
A
LYS
70
-44.61
-72.03
6
A
ARG
73
-36.55
-31.01
6
A
LEU
74
-69.56
-171.67
6
A
MET
76
-49.94
160.51
6
A
ASN
77
79.33
50.21
6
A
ALA
82
175.37
-172.04
6
A
VAL
83
-176.95
123.96
6
A
LYS
91
-89.35
-158.36
6
A
ALA
96
-39.89
-72.34
6
A
LEU
100
-51.15
-71.68
6
A
SER
125
55.61
102.54
7
A
SER
2
-174.06
145.17
7
A
SER
3
-174.13
148.28
7
A
LEU
8
-170.33
-65.76
7
A
LYS
9
63.63
102.26
7
A
ASP
13
63.78
115.42
7
A
ALA
16
-52.82
177.76
7
A
LEU
17
48.08
-172.82
7
A
LEU
19
-95.78
37.53
7
A
GLU
20
44.51
-161.29
7
A
ARG
73
-39.43
-28.44
7
A
LEU
74
-63.76
-175.63
7
A
MET
76
-45.49
172.30
7
A
ALA
82
163.58
176.12
7
A
VAL
83
-169.89
116.79
7
A
HIS
94
-80.68
-71.18
7
A
ALA
96
-40.00
-71.34
7
A
LEU
100
-49.17
-71.68
7
A
SER
125
73.24
-73.99
8
A
ALA
16
-171.39
142.00
8
A
ASN
32
-92.61
-62.91
8
A
SER
61
-173.86
142.56
8
A
ARG
73
-37.46
-31.02
8
A
LEU
74
-66.55
-172.99
8
A
MET
76
-44.11
167.95
8
A
ALA
82
172.74
177.27
8
A
VAL
83
-169.93
119.75
8
A
HIS
94
-84.17
-70.62
8
A
ALA
96
-42.60
-72.89
9
A
SER
2
-147.74
-58.91
9
A
SER
3
62.39
160.55
9
A
LEU
8
-132.96
-146.07
9
A
GLU
11
-178.96
112.88
9
A
ASP
13
-65.63
95.67
9
A
LEU
17
-120.05
-88.80
9
A
SER
18
60.96
110.06
9
A
LEU
19
47.76
-173.05
9
A
ARG
73
-36.50
-32.44
9
A
LEU
74
-64.06
-172.59
9
A
MET
76
-38.87
159.07
9
A
ASN
77
77.42
49.08
9
A
ALA
82
177.18
-175.66
9
A
LEU
88
-141.55
-46.25
9
A
SER
92
-102.17
-169.93
10
A
LEU
8
-174.69
135.25
10
A
LYS
9
-40.55
150.49
10
A
TYR
15
56.47
114.86
10
A
ALA
16
-170.97
108.79
10
A
SER
22
-65.24
-178.39
10
A
SER
61
-179.89
147.84
10
A
ARG
73
-37.11
-31.52
10
A
LEU
74
-66.96
-172.49
10
A
MET
76
-47.15
175.30
10
A
ALA
82
162.13
177.39
10
A
VAL
83
-166.00
115.12
10
A
LEU
88
-130.42
-45.88
10
A
HIS
94
-68.10
-76.18
10
A
ALA
96
-36.16
-70.10
10
A
LEU
100
-56.43
-74.12
10
A
SER
125
-172.27
80.49
11
A
SER
2
66.52
150.63
11
A
ASP
13
-174.18
-53.90
11
A
CYS
14
178.56
137.81
11
A
LEU
17
-107.63
-108.00
11
A
SER
18
-42.16
163.49
11
A
LEU
39
-38.85
-70.70
11
A
SER
61
-177.79
149.20
11
A
ARG
73
-38.21
-30.39
11
A
LEU
74
-64.61
-177.80
11
A
MET
76
-49.24
179.77
11
A
ALA
82
163.69
177.75
11
A
LEU
88
-140.95
-47.00
11
A
ALA
96
-39.62
-70.70
11
A
LEU
100
-40.74
-73.44
11
A
ARG
111
-84.39
-70.97
12
A
SER
2
-177.43
140.93
12
A
SER
3
-172.60
126.50
12
A
LEU
8
-175.92
85.29
12
A
ASP
13
50.76
93.97
12
A
LEU
17
55.85
175.78
12
A
SER
18
-42.97
160.26
12
A
THR
53
-126.15
-162.45
12
A
ARG
73
-38.75
-29.85
12
A
MET
76
-42.86
166.40
12
A
ASN
77
82.01
-1.99
12
A
ALA
82
165.52
171.31
12
A
VAL
83
-164.28
119.88
12
A
HIS
94
-76.35
-73.29
12
A
ALA
96
-39.85
-72.32
12
A
LEU
100
-68.89
-73.25
12
A
ARG
111
-86.51
-70.60
12
A
SER
126
60.69
-92.46
13
A
LEU
8
-108.66
-63.49
13
A
LYS
9
-68.45
-70.07
13
A
GLU
11
45.59
89.39
13
A
ASP
13
47.71
80.55
13
A
TYR
15
53.01
171.47
13
A
SER
18
178.59
134.12
13
A
SER
61
176.65
127.64
13
A
ALA
67
-91.88
-62.10
13
A
PHE
69
-34.79
-39.40
13
A
LYS
70
-54.70
-72.15
13
A
ARG
73
-38.45
-28.67
13
A
LEU
74
-58.17
173.01
13
A
MET
76
-45.50
174.27
13
A
ALA
82
166.88
168.94
13
A
ASN
84
59.39
17.41
13
A
LEU
88
-133.15
-46.53
13
A
HIS
94
-71.14
-72.81
13
A
ALA
96
-40.45
-72.88
13
A
LEU
100
-65.27
-71.50
13
A
ARG
121
-142.00
-56.76
14
A
SER
2
-153.18
-59.09
14
A
SER
3
179.32
170.96
14
A
SER
6
62.00
144.62
14
A
LEU
8
-171.62
127.02
14
A
ASP
13
64.17
148.79
14
A
TYR
15
-149.16
45.16
14
A
SER
22
-49.67
174.26
14
A
LEU
31
-111.89
52.65
14
A
LEU
39
-40.31
-70.84
14
A
HIS
64
-65.13
-177.42
14
A
ARG
73
-38.98
-29.45
14
A
LEU
74
-64.47
-178.83
14
A
MET
76
-42.00
165.96
14
A
ASN
84
59.56
16.12
14
A
SER
92
-116.57
-155.60
14
A
LEU
100
-52.77
-73.82
14
A
ARG
111
-94.04
-73.85
15
A
SER
3
-176.65
131.59
15
A
LEU
8
-158.98
-64.39
15
A
ASP
13
-177.36
99.26
15
A
TYR
15
54.84
166.15
15
A
LEU
17
-57.94
100.92
15
A
SER
18
63.59
142.97
15
A
SER
21
67.26
114.11
15
A
SER
61
179.64
154.43
15
A
HIS
64
-58.15
-173.27
15
A
PHE
69
-36.06
-39.43
15
A
LYS
70
-53.67
-71.77
15
A
ARG
73
-36.71
-30.89
15
A
LEU
74
-59.27
-174.39
15
A
MET
76
-43.29
167.43
15
A
ASN
77
83.70
-5.25
15
A
ALA
82
168.41
171.64
15
A
SER
92
-110.08
-168.46
15
A
ALA
96
-41.59
-72.49
15
A
LEU
100
-43.06
-72.93
15
A
MET
106
-92.65
-68.29
15
A
ARG
111
-87.76
-71.06
15
A
ARG
121
-43.84
164.55
16
A
GLU
11
-162.22
64.65
16
A
SER
22
-50.29
175.27
16
A
SER
36
-39.83
-70.19
16
A
ARG
73
-38.13
-30.47
16
A
LEU
74
-63.51
-178.83
16
A
MET
76
-42.93
167.03
16
A
ASN
77
82.85
0.21
16
A
ALA
82
166.24
-173.85
16
A
LEU
88
-134.47
-46.69
16
A
HIS
94
-81.04
-75.75
16
A
LEU
100
-60.58
-71.85
16
A
ARG
111
-70.78
-71.93
16
A
SER
126
-173.18
110.12
17
A
SER
2
68.07
138.96
17
A
SER
3
178.01
168.66
17
A
GLU
11
67.36
121.51
17
A
SER
61
-178.57
148.84
17
A
ARG
73
-39.22
-28.70
17
A
MET
76
-64.01
-178.84
17
A
ASP
78
-78.89
-158.24
17
A
ALA
82
164.64
174.06
17
A
VAL
83
-163.50
119.44
17
A
LEU
88
-130.70
-45.85
17
A
HIS
94
-93.59
-74.03
17
A
ALA
96
-54.89
-70.57
17
A
LEU
100
-55.93
-73.05
17
A
ARG
111
-84.50
-71.20
17
A
ARG
121
-58.62
-176.70
17
A
SER
126
-160.52
118.75
18
A
SER
2
56.86
165.66
18
A
SER
3
179.80
163.88
18
A
LEU
8
66.53
131.45
18
A
LYS
9
66.92
159.42
18
A
SER
61
-177.74
147.75
18
A
LYS
70
-47.77
-71.31
18
A
ARG
73
-39.48
-28.48
18
A
MET
76
-51.00
-175.11
18
A
ALA
82
168.33
172.91
18
A
HIS
94
-62.73
-74.60
18
A
SER
125
47.45
96.22
18
A
SER
126
-164.95
101.78
19
A
SER
2
63.47
131.08
19
A
SER
3
-170.34
142.75
19
A
LEU
8
68.83
100.49
19
A
ASP
13
61.50
144.81
19
A
CYS
14
179.95
145.26
19
A
SER
21
178.53
163.52
19
A
SER
22
-44.91
159.73
19
A
ARG
73
-38.12
-30.29
19
A
MET
76
-42.64
166.18
19
A
ASN
77
83.27
-0.75
19
A
HIS
94
-61.57
-73.74
19
A
ALA
96
-38.59
-70.40
19
A
LEU
100
-50.59
-73.64
19
A
ARG
111
-95.44
-72.25
19
A
ARG
121
-58.10
172.50
19
A
SER
125
46.64
90.99
20
A
SER
2
55.34
102.33
20
A
LEU
8
177.30
122.34
20
A
GLU
11
64.54
114.97
20
A
ASP
13
70.50
152.09
20
A
TYR
15
-54.75
-179.11
20
A
LEU
17
43.53
-165.77
20
A
LEU
19
49.80
-176.99
20
A
GLU
20
38.31
86.19
20
A
SER
22
76.12
-166.90
20
A
SER
61
-175.91
149.07
20
A
HIS
64
-52.37
-176.04
20
A
ARG
73
-39.15
-29.21
20
A
MET
76
-47.50
176.66
20
A
ALA
82
178.45
-179.01
20
A
ASN
84
56.32
19.97
20
A
HIS
94
-62.84
-71.27
20
A
LEU
100
-45.29
-74.24
20
A
MET
113
-161.80
-168.65
Solution structure of PDZ domain in protein XP_110852
1
N
N
A
ALA
68
A
ALA
68
HELX_P
A
ARG
73
A
ARG
73
1
1
6
A
SER
92
A
SER
92
HELX_P
A
ARG
111
A
ARG
111
1
2
20
DNA BINDING PROTEIN
structural genomics, PDZ domain, RIKEN Structural Genomics/Proteomics Initiative, RSGI, DNA BINDING PROTEIN
XP_110852
GB
1
478
38049537
LKGEPDCYALSLESSEQLTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGET
LLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRR
478
591
1WG6
8
121
38049537
A
1
8
121
1
cloning artifact
GLY
1
1WG6
A
38049537
GB
1
1
cloning artifact
SER
2
1WG6
A
38049537
GB
2
1
cloning artifact
SER
3
1WG6
A
38049537
GB
3
1
cloning artifact
GLY
4
1WG6
A
38049537
GB
4
1
cloning artifact
SER
5
1WG6
A
38049537
GB
5
1
cloning artifact
SER
6
1WG6
A
38049537
GB
6
1
cloning artifact
GLY
7
1WG6
A
38049537
GB
7
1
cloning artifact
SER
122
1WG6
A
38049537
GB
122
1
cloning artifact
GLY
123
1WG6
A
38049537
GB
123
1
cloning artifact
PRO
124
1WG6
A
38049537
GB
124
1
cloning artifact
SER
125
1WG6
A
38049537
GB
125
1
cloning artifact
SER
126
1WG6
A
38049537
GB
126
1
cloning artifact
GLY
127
1WG6
A
38049537
GB
127
4
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
GLU
23
A
GLU
23
A
PRO
30
A
PRO
30
A
MET
113
A
MET
113
A
ARG
120
A
ARG
120
A
LEU
80
A
LEU
80
A
VAL
83
A
VAL
83
A
GLU
86
A
GLU
86
A
THR
87
A
THR
87
A
SER
42
A
SER
42
A
SER
48
A
SER
48
A
THR
53
A
THR
53
A
SER
61
A
SER
61