1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Saito, K.
Koshiba, S.
Inoue, M.
Kigawa, T.
Yokoyama, S.
RIKEN Structural Genomics/Proteomics Initiative (RSGI)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be Published
0353
Solution structure of the Rhodanese-like domain in human ubiquitin specific protease 8 (UBP8)
10.2210/pdb1whb/pdb
pdb_00001whb
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
17490.764
KIAA0055
3.1.2.15
Rhodanese-like domain
1
man
polymer
ubiquitin specific protease 8, UBP8
no
no
GSSGSSGKCETKEKGAITAKELYTMMTDKNISLIIMDARRMQDYQDSCILHSLSVPEEAISPGVTASWIEAHLPDDSKDT
WKKRGNVEYVVLLDWFSSAKDLQIGTTLRSLKDALFKWESKTVLRNEPLVLEGGYENWLLCYPQYTTNAKVSGPSSG
GSSGSSGKCETKEKGAITAKELYTMMTDKNISLIIMDARRMQDYQDSCILHSLSVPEEAISPGVTASWIEAHLPDDSKDT
WKKRGNVEYVVLLDWFSSAKDLQIGTTLRSLKDALFKWESKTVLRNEPLVLEGGYENWLLCYPQYTTNAKVSGPSSG
A
hsk002000052.1
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
sample
Cell-free protein synthesis
Kazusa cDNA ha01049
9606
Homo sapiens
Plasmid
P040119-91
RIKEN Structural Genomics/Proteomics Initiative
RSGI
database_2
pdbx_nmr_software
pdbx_nmr_spectrometer
pdbx_struct_assembly
pdbx_struct_oper_list
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2004-11-28
1
1
2008-04-30
1
2
2011-07-13
1
3
2022-03-02
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_pdbx_nmr_spectrometer.model
_struct_ref_seq_dif.details
Y
PDBJ
Y
PDBJ
2004-05-28
REL
structures with the lowest energy
100
20
3D_13C-separated_NOESY
3D_15N-separated_NOESY
120mM
7.0
ambient
298
K
simulated annealing
1
lowest energy
1mM protein, 20mM d-Tris-HCl, pH 7.0, 100mM NaCl, 1mM d-DTT, 0.02% NaN3, 10% D2O
90% H2O/10% D2O
Bruker
collection
XwinNMR
2.6
Delaglio, F.
processing
NMRPipe
20020425
Johnson B.A.
data analysis
NMRView
5
Brunger, A.T.
structure solution
CNS
1.1
Brunger, A.T.
refinement
CNS
1.1
800
Bruker
AVANCE
GLY
1
n
1
GLY
1
A
SER
2
n
2
SER
2
A
SER
3
n
3
SER
3
A
GLY
4
n
4
GLY
4
A
SER
5
n
5
SER
5
A
SER
6
n
6
SER
6
A
GLY
7
n
7
GLY
7
A
LYS
8
n
8
LYS
8
A
CYS
9
n
9
CYS
9
A
GLU
10
n
10
GLU
10
A
THR
11
n
11
THR
11
A
LYS
12
n
12
LYS
12
A
GLU
13
n
13
GLU
13
A
LYS
14
n
14
LYS
14
A
GLY
15
n
15
GLY
15
A
ALA
16
n
16
ALA
16
A
ILE
17
n
17
ILE
17
A
THR
18
n
18
THR
18
A
ALA
19
n
19
ALA
19
A
LYS
20
n
20
LYS
20
A
GLU
21
n
21
GLU
21
A
LEU
22
n
22
LEU
22
A
TYR
23
n
23
TYR
23
A
THR
24
n
24
THR
24
A
MET
25
n
25
MET
25
A
MET
26
n
26
MET
26
A
THR
27
n
27
THR
27
A
ASP
28
n
28
ASP
28
A
LYS
29
n
29
LYS
29
A
ASN
30
n
30
ASN
30
A
ILE
31
n
31
ILE
31
A
SER
32
n
32
SER
32
A
LEU
33
n
33
LEU
33
A
ILE
34
n
34
ILE
34
A
ILE
35
n
35
ILE
35
A
MET
36
n
36
MET
36
A
ASP
37
n
37
ASP
37
A
ALA
38
n
38
ALA
38
A
ARG
39
n
39
ARG
39
A
ARG
40
n
40
ARG
40
A
MET
41
n
41
MET
41
A
GLN
42
n
42
GLN
42
A
ASP
43
n
43
ASP
43
A
TYR
44
n
44
TYR
44
A
GLN
45
n
45
GLN
45
A
ASP
46
n
46
ASP
46
A
SER
47
n
47
SER
47
A
CYS
48
n
48
CYS
48
A
ILE
49
n
49
ILE
49
A
LEU
50
n
50
LEU
50
A
HIS
51
n
51
HIS
51
A
SER
52
n
52
SER
52
A
LEU
53
n
53
LEU
53
A
SER
54
n
54
SER
54
A
VAL
55
n
55
VAL
55
A
PRO
56
n
56
PRO
56
A
GLU
57
n
57
GLU
57
A
GLU
58
n
58
GLU
58
A
ALA
59
n
59
ALA
59
A
ILE
60
n
60
ILE
60
A
SER
61
n
61
SER
61
A
PRO
62
n
62
PRO
62
A
GLY
63
n
63
GLY
63
A
VAL
64
n
64
VAL
64
A
THR
65
n
65
THR
65
A
ALA
66
n
66
ALA
66
A
SER
67
n
67
SER
67
A
TRP
68
n
68
TRP
68
A
ILE
69
n
69
ILE
69
A
GLU
70
n
70
GLU
70
A
ALA
71
n
71
ALA
71
A
HIS
72
n
72
HIS
72
A
LEU
73
n
73
LEU
73
A
PRO
74
n
74
PRO
74
A
ASP
75
n
75
ASP
75
A
ASP
76
n
76
ASP
76
A
SER
77
n
77
SER
77
A
LYS
78
n
78
LYS
78
A
ASP
79
n
79
ASP
79
A
THR
80
n
80
THR
80
A
TRP
81
n
81
TRP
81
A
LYS
82
n
82
LYS
82
A
LYS
83
n
83
LYS
83
A
ARG
84
n
84
ARG
84
A
GLY
85
n
85
GLY
85
A
ASN
86
n
86
ASN
86
A
VAL
87
n
87
VAL
87
A
GLU
88
n
88
GLU
88
A
TYR
89
n
89
TYR
89
A
VAL
90
n
90
VAL
90
A
VAL
91
n
91
VAL
91
A
LEU
92
n
92
LEU
92
A
LEU
93
n
93
LEU
93
A
ASP
94
n
94
ASP
94
A
TRP
95
n
95
TRP
95
A
PHE
96
n
96
PHE
96
A
SER
97
n
97
SER
97
A
SER
98
n
98
SER
98
A
ALA
99
n
99
ALA
99
A
LYS
100
n
100
LYS
100
A
ASP
101
n
101
ASP
101
A
LEU
102
n
102
LEU
102
A
GLN
103
n
103
GLN
103
A
ILE
104
n
104
ILE
104
A
GLY
105
n
105
GLY
105
A
THR
106
n
106
THR
106
A
THR
107
n
107
THR
107
A
LEU
108
n
108
LEU
108
A
ARG
109
n
109
ARG
109
A
SER
110
n
110
SER
110
A
LEU
111
n
111
LEU
111
A
LYS
112
n
112
LYS
112
A
ASP
113
n
113
ASP
113
A
ALA
114
n
114
ALA
114
A
LEU
115
n
115
LEU
115
A
PHE
116
n
116
PHE
116
A
LYS
117
n
117
LYS
117
A
TRP
118
n
118
TRP
118
A
GLU
119
n
119
GLU
119
A
SER
120
n
120
SER
120
A
LYS
121
n
121
LYS
121
A
THR
122
n
122
THR
122
A
VAL
123
n
123
VAL
123
A
LEU
124
n
124
LEU
124
A
ARG
125
n
125
ARG
125
A
ASN
126
n
126
ASN
126
A
GLU
127
n
127
GLU
127
A
PRO
128
n
128
PRO
128
A
LEU
129
n
129
LEU
129
A
VAL
130
n
130
VAL
130
A
LEU
131
n
131
LEU
131
A
GLU
132
n
132
GLU
132
A
GLY
133
n
133
GLY
133
A
GLY
134
n
134
GLY
134
A
TYR
135
n
135
TYR
135
A
GLU
136
n
136
GLU
136
A
ASN
137
n
137
ASN
137
A
TRP
138
n
138
TRP
138
A
LEU
139
n
139
LEU
139
A
LEU
140
n
140
LEU
140
A
CYS
141
n
141
CYS
141
A
TYR
142
n
142
TYR
142
A
PRO
143
n
143
PRO
143
A
GLN
144
n
144
GLN
144
A
TYR
145
n
145
TYR
145
A
THR
146
n
146
THR
146
A
THR
147
n
147
THR
147
A
ASN
148
n
148
ASN
148
A
ALA
149
n
149
ALA
149
A
LYS
150
n
150
LYS
150
A
VAL
151
n
151
VAL
151
A
SER
152
n
152
SER
152
A
GLY
153
n
153
GLY
153
A
PRO
154
n
154
PRO
154
A
SER
155
n
155
SER
155
A
SER
156
n
156
SER
156
A
GLY
157
n
157
GLY
157
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
17
A
N
ILE
17
A
O
VAL
130
A
O
VAL
130
A
O
LEU
129
A
O
LEU
129
A
N
LEU
92
A
N
LEU
92
A
O
VAL
91
A
O
VAL
91
A
N
ILE
34
A
N
ILE
34
A
N
ILE
35
A
N
ILE
35
A
O
LEU
53
A
O
LEU
53
1
A
SER
3
-131.03
-48.14
1
A
LYS
8
-141.72
-44.22
1
A
CYS
9
69.47
143.69
1
A
GLU
10
-126.05
-63.86
1
A
PRO
74
-51.44
173.86
1
A
GLU
88
-97.40
-79.00
1
A
PHE
96
-154.06
58.75
1
A
PHE
116
-131.33
-53.42
1
A
TRP
118
-103.41
48.93
1
A
SER
120
-134.10
-48.40
1
A
LYS
121
-106.41
-75.98
1
A
PRO
154
-52.18
178.95
2
A
SER
6
59.79
-176.11
2
A
GLU
10
60.15
83.31
2
A
LYS
12
61.37
78.56
2
A
ASN
30
-145.00
-48.99
2
A
LEU
50
-61.91
-75.81
2
A
VAL
55
-162.93
112.91
2
A
PRO
62
-69.33
90.92
2
A
PRO
74
-52.34
174.33
2
A
GLU
88
-111.14
-73.23
2
A
ASP
94
-176.80
-179.96
2
A
PHE
96
-152.16
71.94
2
A
PHE
116
-133.47
-53.35
2
A
TRP
118
-99.79
-63.10
2
A
GLU
119
61.20
163.62
2
A
LYS
121
-157.43
-46.01
2
A
TYR
142
-119.90
74.76
2
A
GLN
144
-96.14
38.58
2
A
TYR
145
-142.99
30.64
2
A
ALA
149
-105.88
78.15
2
A
LYS
150
-153.56
30.94
3
A
SER
3
60.51
179.09
3
A
LYS
8
60.82
106.98
3
A
GLU
10
63.55
140.08
3
A
LYS
29
-98.59
31.11
3
A
ARG
40
-59.76
176.49
3
A
ASP
46
-74.06
-70.05
3
A
VAL
55
-161.84
111.41
3
A
PRO
62
-69.50
91.56
3
A
PRO
74
-54.37
-167.70
3
A
GLU
88
-101.46
-66.46
3
A
PHE
96
-156.85
32.41
3
A
GLU
119
61.00
155.60
3
A
SER
120
-158.39
79.77
3
A
TYR
142
-150.15
80.56
3
A
GLN
144
-90.52
50.82
3
A
TYR
145
-158.04
30.17
3
A
SER
155
65.38
-77.52
4
A
SER
2
64.45
-78.83
4
A
CYS
9
-135.75
-49.77
4
A
THR
27
-98.57
30.88
4
A
ARG
39
-147.97
-62.69
4
A
VAL
55
-170.07
113.10
4
A
PRO
62
-52.28
89.92
4
A
PRO
74
-50.50
176.34
4
A
VAL
87
-67.33
-179.98
4
A
GLU
88
-107.48
-64.16
4
A
ASP
94
-174.05
-179.91
4
A
PHE
96
-157.66
31.70
4
A
GLN
103
-145.22
-76.21
4
A
TRP
118
-90.26
51.91
4
A
LYS
121
62.57
-80.02
4
A
GLU
132
-68.89
97.18
4
A
GLN
144
-96.36
37.66
4
A
TYR
145
-141.07
30.89
4
A
LYS
150
60.63
96.36
4
A
SER
155
-176.63
-51.63
5
A
LYS
8
60.03
173.65
5
A
GLU
10
-138.94
-47.14
5
A
LYS
12
-120.94
-51.65
5
A
LYS
14
-144.17
30.26
5
A
LEU
33
-173.92
139.98
5
A
LEU
50
-58.84
-76.12
5
A
VAL
55
-170.00
112.67
5
A
VAL
87
-59.83
-178.50
5
A
GLU
88
-103.52
-61.02
5
A
ASP
94
-176.68
-179.95
5
A
PHE
96
-162.20
-42.35
5
A
LYS
121
-159.33
31.42
5
A
TYR
145
-93.68
43.51
5
A
SER
155
58.31
105.55
5
A
SER
156
-133.19
-67.08
6
A
SER
3
59.15
108.17
6
A
SER
6
67.89
-67.99
6
A
LEU
33
-176.91
148.41
6
A
CYS
48
-177.25
144.96
6
A
LEU
50
-59.45
-78.44
6
A
VAL
64
-56.05
-178.59
6
A
PRO
74
-56.20
-164.63
6
A
PHE
96
-159.92
72.01
6
A
SER
97
-175.56
84.60
6
A
LYS
121
-151.39
-46.99
6
A
GLN
144
-95.99
38.29
6
A
TYR
145
-143.93
30.37
6
A
SER
155
55.80
80.68
7
A
LYS
8
60.34
90.06
7
A
THR
11
-149.65
-56.17
7
A
LYS
14
-138.80
-46.58
7
A
LEU
33
-172.96
149.00
7
A
ARG
39
-133.62
-59.23
7
A
CYS
48
-177.48
145.28
7
A
VAL
55
-169.97
113.61
7
A
PRO
74
-54.34
-170.82
7
A
VAL
87
-58.82
-179.95
7
A
GLU
88
-105.32
-71.74
7
A
PHE
96
-150.79
56.58
7
A
LEU
115
-137.75
-44.60
7
A
TRP
118
-105.36
-168.81
7
A
GLU
119
65.36
140.18
7
A
SER
155
60.30
92.04
7
A
SER
156
-99.72
-62.51
8
A
SER
5
63.17
146.49
8
A
GLU
10
63.14
82.22
8
A
ASN
30
-130.72
-47.89
8
A
LEU
50
-60.27
-75.99
8
A
PRO
74
-57.08
-161.70
8
A
ASP
75
-90.14
-65.64
8
A
VAL
87
-63.53
-179.41
8
A
GLU
88
-105.51
-78.78
8
A
ASP
94
-177.89
-179.96
8
A
PHE
96
-151.11
73.77
8
A
SER
97
-170.57
109.72
8
A
LEU
115
-133.61
-45.89
8
A
GLU
119
-175.38
-170.71
8
A
SER
120
-171.73
-44.04
8
A
TYR
145
-94.55
40.26
8
A
SER
156
-163.07
32.34
9
A
SER
6
60.29
168.72
9
A
LYS
12
60.13
88.55
9
A
ASN
30
-150.89
23.07
9
A
ARG
39
-143.78
-61.01
9
A
LEU
50
-59.61
-76.64
9
A
PRO
62
-67.72
76.82
9
A
PRO
74
-55.09
-167.37
9
A
VAL
87
-59.65
-179.61
9
A
ASP
94
-178.10
-179.89
9
A
PHE
96
-156.10
30.77
9
A
SER
120
-174.96
-48.09
9
A
LYS
121
-138.06
-56.69
9
A
GLN
144
-92.12
48.96
9
A
TYR
145
-152.95
31.02
9
A
LYS
150
-115.56
71.38
10
A
SER
3
59.10
108.92
10
A
SER
5
-97.98
36.67
10
A
LYS
8
60.32
179.00
10
A
CYS
9
-176.27
51.82
10
A
LYS
12
-104.50
-66.13
10
A
PRO
62
-69.30
80.87
10
A
PRO
74
-52.83
-173.46
10
A
GLU
88
-102.81
-60.90
10
A
ASP
94
-177.92
-179.73
10
A
PHE
96
-155.00
35.59
10
A
GLN
103
-142.02
-78.09
10
A
LYS
121
-155.18
-52.64
10
A
TYR
145
-95.16
38.90
11
A
SER
5
-155.12
79.27
11
A
CYS
9
-69.71
92.36
11
A
ARG
39
-138.29
-59.05
11
A
ARG
40
-179.11
-171.78
11
A
CYS
48
-176.98
148.13
11
A
PRO
62
-68.15
81.46
11
A
PRO
74
-54.91
-166.27
11
A
PHE
96
-153.23
74.26
11
A
ILE
104
-67.62
82.80
11
A
PHE
116
-123.64
-50.88
11
A
SER
120
-132.68
-46.67
11
A
LYS
121
-144.43
-48.02
11
A
TYR
145
-96.22
38.31
12
A
CYS
9
179.26
151.38
12
A
GLU
10
-176.83
-42.61
12
A
ASN
30
-131.35
-61.16
12
A
ARG
39
-146.35
-58.62
12
A
ARG
40
-178.51
-173.45
12
A
CYS
48
-171.51
142.09
12
A
VAL
55
-170.08
113.42
12
A
PRO
74
-52.37
-174.34
12
A
ASP
94
-172.67
-179.98
12
A
PHE
96
-151.83
78.36
12
A
GLN
103
-104.30
-66.98
12
A
ILE
104
-177.72
-39.01
12
A
SER
120
-154.18
-46.80
12
A
LYS
121
-148.72
-47.07
12
A
GLN
144
-97.12
30.82
12
A
ASN
148
-97.64
-63.94
12
A
VAL
151
-142.76
-46.28
12
A
SER
156
60.64
98.76
13
A
SER
5
62.65
-80.15
13
A
CYS
9
61.26
164.54
13
A
LYS
12
60.04
60.89
13
A
LEU
33
-177.44
144.08
13
A
ARG
40
-60.97
-174.85
13
A
VAL
55
-170.06
109.85
13
A
PRO
62
-69.33
96.13
13
A
PRO
74
-55.64
-161.89
13
A
GLU
88
-106.22
-73.51
13
A
PHE
96
-150.66
77.30
13
A
LYS
121
-146.23
31.60
13
A
GLU
132
-69.74
94.59
13
A
GLN
144
-96.11
41.34
13
A
TYR
145
-145.50
32.40
14
A
SER
3
-144.35
-52.07
14
A
SER
5
68.79
-67.55
14
A
CYS
9
-171.33
-41.39
14
A
GLU
10
-56.66
90.16
14
A
THR
11
-152.44
25.66
14
A
LYS
12
-147.38
32.39
14
A
GLU
13
-58.00
103.83
14
A
PRO
62
-68.88
89.56
14
A
PRO
74
-51.40
171.80
14
A
VAL
87
-58.19
-179.49
14
A
GLU
88
-108.01
-65.84
14
A
ASP
94
-177.35
-179.94
14
A
PHE
96
-158.27
36.97
14
A
GLN
103
-98.93
31.31
14
A
ILE
104
63.82
139.96
14
A
THR
106
-60.16
-175.45
14
A
LEU
115
-130.52
-45.53
14
A
LYS
121
-173.76
36.90
14
A
TYR
145
-94.26
41.90
14
A
PRO
154
-49.67
167.46
14
A
SER
155
61.32
110.47
15
A
SER
5
-97.44
39.11
15
A
LYS
8
-166.71
93.77
15
A
CYS
9
61.77
116.01
15
A
THR
11
61.48
160.70
15
A
LYS
14
-147.49
-48.25
15
A
ASN
30
-131.22
-46.14
15
A
LEU
33
-175.98
147.47
15
A
LEU
50
-67.17
-70.05
15
A
VAL
55
-170.07
109.87
15
A
PRO
62
-69.85
93.82
15
A
PRO
74
-54.83
-166.94
15
A
VAL
87
-57.64
176.85
15
A
GLU
88
-104.00
-79.14
15
A
PHE
96
-144.45
35.99
15
A
LEU
115
-132.80
-44.94
15
A
SER
120
-142.34
24.37
15
A
LYS
121
-144.94
-58.27
15
A
GLN
144
-92.22
48.30
15
A
TYR
145
-157.69
40.08
15
A
ASN
148
-101.35
-68.06
15
A
LYS
150
-141.96
38.46
15
A
SER
155
-174.03
86.25
16
A
SER
2
-102.82
-65.77
16
A
SER
3
-122.30
-60.41
16
A
GLU
10
-65.67
89.35
16
A
GLU
13
61.05
155.90
16
A
LYS
29
-98.85
30.15
16
A
ARG
40
-63.71
-179.08
16
A
VAL
55
-170.02
112.61
16
A
HIS
72
-112.23
79.52
16
A
PRO
74
-55.65
-166.06
16
A
GLU
88
-100.52
-75.20
16
A
ASP
94
-175.68
-179.99
16
A
LEU
115
-135.43
-45.30
16
A
GLU
119
-178.42
-172.98
16
A
SER
120
-176.63
-43.48
16
A
GLN
144
-97.52
34.96
16
A
TYR
145
-140.18
29.25
16
A
LYS
150
-67.29
75.95
16
A
SER
156
60.30
167.67
17
A
SER
3
-158.50
80.53
17
A
SER
6
-98.21
35.98
17
A
CYS
9
60.36
158.85
17
A
LYS
14
-98.49
30.95
17
A
THR
27
-98.58
30.40
17
A
LYS
29
-98.12
30.87
17
A
LEU
50
-63.66
-78.17
17
A
PRO
74
-56.89
-161.03
17
A
ASP
75
-90.10
-63.20
17
A
ASP
94
-174.26
-179.95
17
A
PHE
96
-162.21
-43.14
17
A
GLU
119
59.38
176.66
17
A
SER
120
-143.71
-46.91
17
A
LYS
121
-168.21
-43.18
17
A
TYR
145
-90.78
48.60
17
A
LYS
150
-67.93
79.12
17
A
PRO
154
-68.52
93.02
18
A
SER
5
-148.35
-47.31
18
A
THR
11
60.62
170.25
18
A
THR
27
-99.37
35.96
18
A
ASN
30
-146.70
-51.20
18
A
LEU
50
-58.38
-78.94
18
A
VAL
55
-161.11
109.66
18
A
PRO
62
-69.37
91.51
18
A
PRO
74
-51.55
-177.21
18
A
ASP
94
-177.00
-179.97
18
A
GLN
103
-140.86
-71.89
18
A
TRP
118
-93.47
46.92
18
A
LYS
121
63.40
-79.10
18
A
GLN
144
-96.20
37.22
18
A
TYR
145
-140.95
30.64
18
A
ASN
148
-93.86
-64.85
18
A
LYS
150
-162.47
73.71
19
A
SER
5
68.15
-70.03
19
A
SER
6
-168.19
107.65
19
A
LYS
8
-132.71
-48.65
19
A
LYS
12
-98.61
35.74
19
A
ARG
39
-141.83
-51.29
19
A
ARG
40
179.81
-170.72
19
A
VAL
55
-170.01
110.71
19
A
PRO
62
-69.76
92.26
19
A
PRO
74
-55.17
-167.35
19
A
ASP
94
-177.67
-179.88
19
A
PHE
96
-161.88
80.37
19
A
LEU
102
-68.50
82.54
19
A
GLU
119
-176.98
-178.06
19
A
SER
120
-176.78
-43.53
19
A
PRO
128
-51.58
105.84
19
A
GLN
144
-96.42
37.96
19
A
TYR
145
-145.46
32.61
19
A
SER
156
60.36
81.56
20
A
SER
5
-142.19
31.56
20
A
GLU
10
61.27
179.56
20
A
THR
11
-155.96
-43.66
20
A
GLU
13
71.53
151.92
20
A
THR
27
-98.88
32.04
20
A
LEU
33
-175.78
143.26
20
A
ARG
39
-143.92
-62.04
20
A
ILE
104
-60.05
92.06
20
A
SER
120
-175.50
37.16
20
A
LYS
121
-175.50
-44.93
20
A
GLN
144
-93.02
48.42
20
A
TYR
145
-155.39
32.34
20
A
SER
155
-136.84
-47.23
20
A
SER
156
-145.66
-50.33
Solution structure of the Rhodanese-like domain in human ubiquitin specific protease 8 (UBP8)
1
N
N
A
THR
18
A
THR
18
HELX_P
A
THR
27
A
THR
27
1
1
10
A
ARG
40
A
ARG
40
HELX_P
A
SER
47
A
SER
47
1
2
8
A
THR
65
A
THR
65
HELX_P
A
HIS
72
A
HIS
72
1
3
8
A
ASP
76
A
ASP
76
HELX_P
A
LYS
83
A
LYS
83
1
4
8
A
ARG
84
A
ARG
84
HELX_P
A
ASN
86
A
ASN
86
5
5
3
A
SER
98
A
SER
98
HELX_P
A
LEU
102
A
LEU
102
5
6
5
A
THR
106
A
THR
106
HELX_P
A
ALA
114
A
ALA
114
1
7
9
A
GLY
134
A
GLY
134
HELX_P
A
TYR
142
A
TYR
142
1
8
9
A
PRO
143
A
PRO
143
HELX_P
A
THR
146
A
THR
146
5
9
4
HYDROLASE
deubiqutinating enzyme, ubpy, structural genomics, RIKEN Structural Genomics/Proteomics Initiative, RSGI, hydrolase
UBP8_HUMAN
UNP
1
176
P40818
KCETKEKGAITAKELYTMMTDKNISLIIMDARRMQDYQDSCILHSLSVPEEAISPGVTASWIEAHLPDDSKDTWKKRGNV
EYVVLLDWFSSAKDLQIGTTLRSLKDALFKWESKTVLRNEPLVLEGGYENWLLCYPQYTTNAKV
176
319
1WHB
8
151
P40818
A
1
8
151
1
cloning artifact
GLY
1
1WHB
A
P40818
UNP
1
1
cloning artifact
SER
2
1WHB
A
P40818
UNP
2
1
cloning artifact
SER
3
1WHB
A
P40818
UNP
3
1
cloning artifact
GLY
4
1WHB
A
P40818
UNP
4
1
cloning artifact
SER
5
1WHB
A
P40818
UNP
5
1
cloning artifact
SER
6
1WHB
A
P40818
UNP
6
1
cloning artifact
GLY
7
1WHB
A
P40818
UNP
7
1
cloning artifact
SER
152
1WHB
A
P40818
UNP
152
1
cloning artifact
GLY
153
1WHB
A
P40818
UNP
153
1
cloning artifact
PRO
154
1WHB
A
P40818
UNP
154
1
cloning artifact
SER
155
1WHB
A
P40818
UNP
155
1
cloning artifact
SER
156
1WHB
A
P40818
UNP
156
1
cloning artifact
GLY
157
1WHB
A
P40818
UNP
157
5
parallel
parallel
parallel
parallel
A
ALA
16
A
ALA
16
A
ILE
17
A
ILE
17
A
LEU
129
A
LEU
129
A
LEU
131
A
LEU
131
A
TYR
89
A
TYR
89
A
LEU
93
A
LEU
93
A
LEU
33
A
LEU
33
A
ALA
38
A
ALA
38
A
LEU
53
A
LEU
53
A
VAL
55
A
VAL
55