1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Nishimura, M.
Yoshida, T.
Shirouzu, M.
Terada, T.
Kuramitsu, S.
Yokoyama, S.
Ohkubo, T.
Kobayashi, Y.
RIKEN Structural Genomics/Proteomics Initiative (RSGI)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
C
N
81
N
O
N
82
N
N
N
83
N
O
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
N
N
95
S
C
N
96
N
C
N
97
N
O
N
98
N
C
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
S
C
N
125
N
C
N
126
N
O
N
127
N
C
Y
128
N
C
Y
129
N
N
Y
130
N
C
Y
131
N
C
Y
132
N
N
N
133
N
O
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
N
N
145
S
C
N
146
N
C
N
147
N
O
N
148
S
C
N
149
N
C
N
150
N
C
N
151
N
C
N
152
N
O
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
N
N
167
S
C
N
168
N
C
N
169
N
O
N
170
N
C
N
171
N
C
N
172
N
C
N
173
N
C
N
174
N
O
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
N
N
189
S
C
N
190
N
C
N
191
N
O
N
192
N
C
N
193
N
C
N
194
N
C
N
195
N
C
N
196
N
N
N
197
N
O
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
N
N
214
S
C
N
215
N
C
N
216
N
O
N
217
N
C
N
218
N
C
N
219
N
S
N
220
N
C
N
221
N
O
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
N
N
234
S
C
N
235
N
C
N
236
N
O
N
237
N
C
Y
238
N
C
Y
239
N
C
Y
240
N
C
Y
241
N
C
Y
242
N
C
Y
243
N
C
N
244
N
O
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
N
N
257
S
C
N
258
N
C
N
259
N
O
N
260
N
C
N
261
N
C
N
262
N
C
N
263
N
O
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
R
C
N
278
N
O
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
Y
295
N
C
Y
296
N
C
Y
297
N
C
Y
298
N
N
Y
299
N
C
Y
300
N
C
Y
301
N
C
Y
302
N
C
Y
303
N
C
N
304
N
O
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
N
N
318
S
C
N
319
N
C
N
320
N
O
N
321
N
C
Y
322
N
C
Y
323
N
C
Y
324
N
C
Y
325
N
C
Y
326
N
C
Y
327
N
C
N
328
N
O
N
329
N
O
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
N
N
342
S
C
N
343
N
C
N
344
N
O
N
345
N
C
N
346
N
C
N
347
N
C
N
348
N
O
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
Y
127
N
sing
Y
128
N
doub
Y
129
N
doub
N
130
N
sing
Y
131
N
sing
N
132
N
sing
Y
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
doub
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
doub
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
doub
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
doub
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
doub
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
Y
233
N
doub
Y
234
N
sing
Y
235
N
sing
N
236
N
sing
Y
237
N
doub
N
238
N
sing
Y
239
N
doub
N
240
N
sing
Y
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
doub
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
doub
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
doub
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
Y
289
N
doub
Y
290
N
sing
Y
291
N
sing
N
292
N
sing
Y
293
N
doub
Y
294
N
sing
Y
295
N
sing
N
296
N
sing
Y
297
N
sing
Y
298
N
doub
N
299
N
sing
Y
300
N
doub
N
301
N
sing
Y
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
N
322
N
sing
Y
323
N
doub
N
324
N
sing
Y
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
doub
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
344
1369
1383
10.1016/j.jmb.2004.10.011
15561149
Solution Structure of Ribosomal Protein L16 from Thermus thermophilus HB8
2004
10.2210/pdb1wki/pdb
pdb_00001wki
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
15993.909
LSU ribosomal protein L16P
1
man
polymer
no
no
MLMPRRMKYRKQQRGRLKGATKGGDYVAFGDYGLVALEPAWITAQQIEAARVAMVRHFRRGGKIFIRIFPDKPYTKKPLE
VRMGKGKGNVEGYVAVVKPGRVMFEVAGVTEEQAMEALRIAGHKLPIKTKIVRRDAYDEAQ
MLMPRRMKYRKQQRGRLKGATKGGDYVAFGDYGLVALEPAWITAQQIEAARVAMVRHFRRGGKIFIRIFPDKPYTKKPLE
VRMGKGKGNVEGYVAVVKPGRVMFEVAGVTEEQAMEALRIAGHKLPIKTKIVRRDAYDEAQ
A
ttk003000816.1
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Thermus
Thermus thermophilus
HB8
Escherichia
Escherichia coli
sample
RPLP
300852
Thermus thermophilus
469008
Escherichia coli BL21(DE3)
BL21(DE3)
PLASMID
PET26b
RIKEN Structural Genomics/Proteomics Initiative
RSGI
chem_comp_atom
chem_comp_bond
database_2
repository
Initial release
Version format compliance
Source and taxonomy
Version format compliance
Data collection
Database references
1
0
2004-12-14
1
1
2008-04-30
1
2
2011-07-13
1
3
2024-05-01
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
HELIX
determination method: author determined
SHEET
determination method: author determined
Y
PDBJ
Y
PDBJ
2004-05-31
REL
REL
target function
700
30
3D_15N-SEPARATED_NOESY
TRIPLE RESONANCE EXPERIMENTS FOR ASSIGNMENTS
3D_13C-SEPARATED_NOESY
100mM NACL
5.4
1
atm
303
K
The structure are based on a total of 2590 restraints,
2364 are noe-derived distance constraints, 162 dihedral angle restraints, 64 distance restraints from hydrogen bonds.
simulated annealing, torsion angle dynamics
1
lowest energy
0.5MM L16 U-15N, 13C
10MM ACETATE BUFFER; 100MM NACL; 99% D2O
0.5MM L16 U-15N, 13C
10MM ACETATE BUFFER; 100MM NACL; 10% D2O
0.5MM L16 U-15N
10MM ACETATE BUFFER; 100MM NACL; 10% D2O
BRUNGER
refinement
CNS
1.1
BRUNGER
structure solution
CNS
1.1
600
Varian
INOVA
500
Varian
INOVA
MET
1
n
1
MET
1
A
LEU
2
n
2
LEU
2
A
MET
3
n
3
MET
3
A
PRO
4
n
4
PRO
4
A
ARG
5
n
5
ARG
5
A
ARG
6
n
6
ARG
6
A
MET
7
n
7
MET
7
A
LYS
8
n
8
LYS
8
A
TYR
9
n
9
TYR
9
A
ARG
10
n
10
ARG
10
A
LYS
11
n
11
LYS
11
A
GLN
12
n
12
GLN
12
A
GLN
13
n
13
GLN
13
A
ARG
14
n
14
ARG
14
A
GLY
15
n
15
GLY
15
A
ARG
16
n
16
ARG
16
A
LEU
17
n
17
LEU
17
A
LYS
18
n
18
LYS
18
A
GLY
19
n
19
GLY
19
A
ALA
20
n
20
ALA
20
A
THR
21
n
21
THR
21
A
LYS
22
n
22
LYS
22
A
GLY
23
n
23
GLY
23
A
GLY
24
n
24
GLY
24
A
ASP
25
n
25
ASP
25
A
TYR
26
n
26
TYR
26
A
VAL
27
n
27
VAL
27
A
ALA
28
n
28
ALA
28
A
PHE
29
n
29
PHE
29
A
GLY
30
n
30
GLY
30
A
ASP
31
n
31
ASP
31
A
TYR
32
n
32
TYR
32
A
GLY
33
n
33
GLY
33
A
LEU
34
n
34
LEU
34
A
VAL
35
n
35
VAL
35
A
ALA
36
n
36
ALA
36
A
LEU
37
n
37
LEU
37
A
GLU
38
n
38
GLU
38
A
PRO
39
n
39
PRO
39
A
ALA
40
n
40
ALA
40
A
TRP
41
n
41
TRP
41
A
ILE
42
n
42
ILE
42
A
THR
43
n
43
THR
43
A
ALA
44
n
44
ALA
44
A
GLN
45
n
45
GLN
45
A
GLN
46
n
46
GLN
46
A
ILE
47
n
47
ILE
47
A
GLU
48
n
48
GLU
48
A
ALA
49
n
49
ALA
49
A
ALA
50
n
50
ALA
50
A
ARG
51
n
51
ARG
51
A
VAL
52
n
52
VAL
52
A
ALA
53
n
53
ALA
53
A
MET
54
n
54
MET
54
A
VAL
55
n
55
VAL
55
A
ARG
56
n
56
ARG
56
A
HIS
57
n
57
HIS
57
A
PHE
58
n
58
PHE
58
A
ARG
59
n
59
ARG
59
A
ARG
60
n
60
ARG
60
A
GLY
61
n
61
GLY
61
A
GLY
62
n
62
GLY
62
A
LYS
63
n
63
LYS
63
A
ILE
64
n
64
ILE
64
A
PHE
65
n
65
PHE
65
A
ILE
66
n
66
ILE
66
A
ARG
67
n
67
ARG
67
A
ILE
68
n
68
ILE
68
A
PHE
69
n
69
PHE
69
A
PRO
70
n
70
PRO
70
A
ASP
71
n
71
ASP
71
A
LYS
72
n
72
LYS
72
A
PRO
73
n
73
PRO
73
A
TYR
74
n
74
TYR
74
A
THR
75
n
75
THR
75
A
LYS
76
n
76
LYS
76
A
LYS
77
n
77
LYS
77
A
PRO
78
n
78
PRO
78
A
LEU
79
n
79
LEU
79
A
GLU
80
n
80
GLU
80
A
VAL
81
n
81
VAL
81
A
ARG
82
n
82
ARG
82
A
MET
83
n
83
MET
83
A
GLY
84
n
84
GLY
84
A
LYS
85
n
85
LYS
85
A
GLY
86
n
86
GLY
86
A
LYS
87
n
87
LYS
87
A
GLY
88
n
88
GLY
88
A
ASN
89
n
89
ASN
89
A
VAL
90
n
90
VAL
90
A
GLU
91
n
91
GLU
91
A
GLY
92
n
92
GLY
92
A
TYR
93
n
93
TYR
93
A
VAL
94
n
94
VAL
94
A
ALA
95
n
95
ALA
95
A
VAL
96
n
96
VAL
96
A
VAL
97
n
97
VAL
97
A
LYS
98
n
98
LYS
98
A
PRO
99
n
99
PRO
99
A
GLY
100
n
100
GLY
100
A
ARG
101
n
101
ARG
101
A
VAL
102
n
102
VAL
102
A
MET
103
n
103
MET
103
A
PHE
104
n
104
PHE
104
A
GLU
105
n
105
GLU
105
A
VAL
106
n
106
VAL
106
A
ALA
107
n
107
ALA
107
A
GLY
108
n
108
GLY
108
A
VAL
109
n
109
VAL
109
A
THR
110
n
110
THR
110
A
GLU
111
n
111
GLU
111
A
GLU
112
n
112
GLU
112
A
GLN
113
n
113
GLN
113
A
ALA
114
n
114
ALA
114
A
MET
115
n
115
MET
115
A
GLU
116
n
116
GLU
116
A
ALA
117
n
117
ALA
117
A
LEU
118
n
118
LEU
118
A
ARG
119
n
119
ARG
119
A
ILE
120
n
120
ILE
120
A
ALA
121
n
121
ALA
121
A
GLY
122
n
122
GLY
122
A
HIS
123
n
123
HIS
123
A
LYS
124
n
124
LYS
124
A
LEU
125
n
125
LEU
125
A
PRO
126
n
126
PRO
126
A
ILE
127
n
127
ILE
127
A
LYS
128
n
128
LYS
128
A
THR
129
n
129
THR
129
A
LYS
130
n
130
LYS
130
A
ILE
131
n
131
ILE
131
A
VAL
132
n
132
VAL
132
A
ARG
133
n
133
ARG
133
A
ARG
134
n
134
ARG
134
A
ASP
135
n
135
ASP
135
A
ALA
136
n
136
ALA
136
A
TYR
137
n
137
TYR
137
A
ASP
138
n
138
ASP
138
A
GLU
139
n
139
GLU
139
A
ALA
140
n
140
ALA
140
A
GLN
141
n
141
GLN
141
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LYS
63
A
N
LYS
63
A
O
ALA
107
A
O
ALA
107
A
O
LEU
34
A
O
LEU
34
A
N
PHE
104
A
N
PHE
104
A
N
TYR
32
A
N
TYR
32
A
O
ARG
133
A
O
ARG
133
A
N
THR
129
A
N
THR
129
A
O
ALA
36
A
O
ALA
36
A
O
ALA
36
A
O
ALA
36
A
N
ARG
101
A
N
ARG
101
A
N
ALA
40
A
N
ALA
40
A
O
VAL
97
A
O
VAL
97
A
O
VAL
94
A
O
VAL
94
A
N
LYS
72
A
N
LYS
72
1
A
A
O
HH
TYR
TYR
26
137
1.59
2
A
A
O
H
GLN
ALA
45
49
1.59
3
A
A
O
H
GLN
ALA
45
49
1.60
5
A
A
O
H
GLN
ALA
45
49
1.59
6
A
A
O
H
GLN
ALA
45
49
1.60
8
A
A
O
H
GLN
ALA
45
49
1.60
9
A
A
H
O
LEU
PHE
34
104
1.59
9
A
A
O
H
GLN
ALA
45
49
1.60
10
A
A
O
H
GLN
ALA
45
49
1.59
11
A
A
O
H
GLN
ALA
45
49
1.60
15
A
A
O
H
GLN
ALA
45
49
1.60
19
A
A
O
H
GLN
ALA
45
49
1.59
20
A
A
O
H
GLN
ALA
45
49
1.59
21
A
A
O
H
GLN
ALA
45
49
1.59
25
A
A
O
H
GLN
ALA
45
49
1.60
27
A
A
O
HH
TYR
TYR
26
137
1.56
28
A
A
O
H
GLN
ALA
45
49
1.59
30
A
A
O
H
GLN
ALA
45
49
1.60
1
A
PRO
4
-51.78
171.23
1
A
ARG
6
-157.43
-44.45
1
A
ARG
14
60.62
160.69
1
A
VAL
27
-161.60
-68.14
1
A
ALA
28
61.72
118.01
1
A
PHE
29
62.30
142.45
1
A
PHE
58
-52.71
98.86
1
A
ASP
71
-140.26
-46.94
1
A
LYS
76
-98.73
31.35
1
A
GLU
80
-167.71
33.43
1
A
LYS
87
-176.14
128.94
1
A
GLU
91
-93.72
46.44
1
A
ARG
134
-47.04
89.71
2
A
ARG
5
59.27
113.12
2
A
TYR
9
-153.12
44.46
2
A
ARG
14
-94.42
46.13
2
A
LEU
17
-165.87
85.03
2
A
VAL
27
-164.79
-41.64
2
A
ALA
28
74.84
-73.82
2
A
PHE
58
-53.43
108.84
2
A
ARG
60
-98.21
32.96
2
A
LYS
87
-149.00
-45.76
2
A
GLU
91
-94.65
43.59
2
A
ARG
134
-47.40
90.05
3
A
LEU
2
59.47
99.25
3
A
ARG
6
-140.35
32.38
3
A
LYS
11
-98.99
33.71
3
A
TYR
26
-83.53
-75.60
3
A
VAL
27
-157.36
-83.12
3
A
ALA
28
50.29
-173.56
3
A
PHE
29
64.71
-78.88
3
A
PHE
58
-48.10
106.14
3
A
GLU
80
60.14
84.50
3
A
LYS
87
-162.77
118.68
3
A
GLU
91
-93.80
46.17
3
A
ARG
134
-56.88
3.12
3
A
ASP
135
-164.12
26.44
4
A
LEU
2
-160.33
82.64
4
A
ARG
5
61.17
96.40
4
A
ARG
6
-164.47
89.17
4
A
LYS
8
62.26
117.62
4
A
ARG
14
-77.49
-76.28
4
A
LYS
22
65.42
178.49
4
A
ALA
28
-91.79
-72.20
4
A
PHE
29
-138.59
-56.04
4
A
PHE
58
-52.48
103.91
4
A
GLU
80
60.64
75.75
4
A
GLU
91
-90.67
52.00
4
A
ARG
134
-46.84
89.56
5
A
TYR
9
-165.42
35.11
5
A
LYS
11
65.83
126.57
5
A
ARG
14
60.49
179.87
5
A
THR
21
-150.35
77.75
5
A
VAL
27
-161.09
-49.20
5
A
ALA
28
68.55
-69.94
5
A
ARG
60
-99.30
32.98
5
A
PRO
78
-77.61
-168.14
5
A
GLU
80
62.39
85.31
5
A
ARG
82
-87.20
-79.35
5
A
MET
83
55.02
179.62
5
A
GLU
91
-94.96
42.50
5
A
ARG
134
-44.93
88.19
6
A
ARG
5
60.76
104.24
6
A
LYS
8
61.67
153.15
6
A
LYS
11
60.16
107.93
6
A
ARG
16
60.76
157.27
6
A
VAL
27
-160.25
-45.21
6
A
ALA
28
68.21
-69.92
6
A
PHE
58
-57.18
105.81
6
A
ARG
60
-98.20
32.98
6
A
PRO
78
-68.56
-171.37
6
A
GLU
80
60.13
101.81
6
A
LYS
87
-175.65
-40.31
6
A
GLU
91
-93.22
55.73
6
A
GLU
105
-165.90
116.30
6
A
ARG
134
-47.10
89.87
7
A
ARG
5
64.21
164.77
7
A
TYR
9
62.97
77.19
7
A
LYS
11
-63.27
81.51
7
A
ARG
14
-127.58
-72.19
7
A
LEU
17
-59.10
-167.76
7
A
VAL
27
-25.75
-47.86
7
A
ALA
28
73.09
-77.59
7
A
ARG
60
-96.76
33.13
7
A
GLU
80
-163.20
-52.64
7
A
GLU
91
-91.25
50.03
7
A
ARG
134
-45.07
88.60
7
A
ASP
135
70.31
40.32
8
A
LEU
2
-137.98
-67.06
8
A
ARG
5
63.64
134.74
8
A
ARG
6
58.32
106.37
8
A
TYR
9
-59.71
87.19
8
A
TYR
26
51.39
-92.48
8
A
VAL
27
-165.26
-79.40
8
A
ALA
28
51.79
176.66
8
A
PHE
29
62.91
-82.04
8
A
PHE
58
-58.46
91.94
8
A
ARG
60
-98.01
33.12
8
A
GLU
80
65.90
-68.80
8
A
GLU
91
-92.34
47.56
8
A
GLU
105
-164.27
114.93
8
A
ARG
134
42.14
-104.42
8
A
ASP
135
-101.78
46.12
8
A
ALA
140
-68.75
98.74
9
A
PRO
4
-51.59
-176.89
9
A
ARG
5
62.57
112.69
9
A
LYS
8
59.99
157.51
9
A
ARG
16
60.17
160.13
9
A
TYR
26
69.43
-99.06
9
A
ALA
28
-50.52
-70.31
9
A
PHE
29
-158.61
-47.32
9
A
PHE
58
-56.49
109.67
9
A
ARG
60
-98.17
33.17
9
A
LYS
76
-108.30
63.63
9
A
GLU
80
58.40
-177.92
9
A
ARG
134
-48.89
90.96
9
A
ASP
135
73.63
38.92
10
A
ARG
6
60.98
-175.64
10
A
LYS
11
-120.64
-54.45
10
A
THR
21
-59.11
172.11
10
A
TYR
26
-179.40
-42.48
10
A
VAL
27
123.07
-80.27
10
A
ALA
28
56.55
167.27
10
A
PHE
29
62.63
-79.92
10
A
PHE
58
-58.97
87.03
10
A
ARG
60
-98.09
32.53
10
A
ASP
71
-132.02
-45.69
10
A
PRO
73
-56.38
171.48
10
A
GLU
80
-159.35
-46.02
10
A
ARG
82
-68.96
92.21
10
A
ARG
134
-46.84
89.76
10
A
ASP
135
71.96
37.68
11
A
ARG
5
-66.30
-165.28
11
A
ARG
6
64.10
99.68
11
A
ARG
14
-164.32
102.11
11
A
LEU
17
-66.31
-170.38
11
A
VAL
27
-28.56
-74.54
11
A
ALA
28
63.06
126.77
11
A
PHE
29
59.58
96.86
11
A
ARG
60
-98.09
33.03
11
A
ASP
71
-144.46
-46.66
11
A
ARG
82
-131.87
-46.55
11
A
ARG
134
-43.99
87.99
12
A
PRO
4
-51.08
173.29
12
A
ARG
14
-139.85
-47.38
12
A
ARG
16
60.35
164.97
12
A
VAL
27
-170.99
132.06
12
A
PHE
29
62.12
170.20
12
A
PHE
58
-53.57
94.03
12
A
ARG
60
-98.11
33.09
12
A
PRO
78
-75.75
-167.69
12
A
ARG
82
60.63
68.70
12
A
MET
83
-178.78
101.93
12
A
LYS
87
-177.61
-39.46
12
A
GLU
91
-92.60
48.44
12
A
ARG
134
-44.66
88.76
12
A
ALA
140
-60.45
98.08
13
A
LEU
2
62.25
117.81
13
A
LYS
8
-142.58
-47.77
13
A
LYS
11
60.69
111.27
13
A
ARG
14
60.14
-173.83
13
A
ALA
20
-67.06
99.89
13
A
ASP
25
-136.67
-73.02
13
A
TYR
26
62.29
118.43
13
A
VAL
27
-34.07
143.74
13
A
ALA
28
-161.27
77.18
13
A
PHE
29
170.58
-58.35
13
A
PHE
58
-55.56
97.78
13
A
ARG
60
-96.82
33.07
13
A
ASP
71
-137.83
-46.07
13
A
GLU
105
-165.24
115.06
13
A
ARG
134
-45.61
88.07
14
A
LEU
2
-99.14
30.65
14
A
ARG
6
-136.58
-46.14
14
A
ALA
28
68.79
-71.25
14
A
ASP
71
-124.60
-52.15
14
A
LYS
76
-142.50
42.92
14
A
ARG
82
-171.76
139.27
14
A
LYS
87
-153.76
30.74
14
A
GLU
91
-95.49
41.89
14
A
GLU
105
-166.66
114.82
14
A
ARG
134
40.88
-103.53
14
A
ASP
135
-106.01
46.46
15
A
ARG
5
-161.47
111.60
15
A
TYR
9
-155.69
86.83
15
A
LEU
17
-58.23
170.17
15
A
ALA
20
-63.05
95.46
15
A
ASP
25
-59.32
-174.97
15
A
TYR
26
-99.76
-74.14
15
A
VAL
27
177.70
-35.45
15
A
ALA
28
69.81
-162.80
15
A
PHE
58
-51.58
102.85
15
A
LYS
76
-98.56
31.49
15
A
GLU
80
-173.29
36.22
15
A
GLU
105
-165.88
115.07
15
A
ARG
134
38.71
-105.28
15
A
ASP
135
-103.07
43.38
16
A
THR
21
50.54
-178.12
16
A
LYS
22
60.64
111.27
16
A
ASP
25
-53.15
172.49
16
A
TYR
26
-162.49
109.92
16
A
VAL
27
-21.81
-53.26
16
A
ALA
28
73.34
-80.81
16
A
PHE
58
-47.63
97.77
16
A
ARG
60
-97.55
33.02
16
A
PRO
78
-53.38
-173.32
16
A
MET
83
60.46
159.04
16
A
GLU
91
-94.14
45.93
16
A
THR
110
-68.45
-177.87
16
A
ARG
134
-43.52
87.27
16
A
ASP
135
71.59
35.13
17
A
LEU
2
60.31
94.28
17
A
PRO
4
-75.11
-168.27
17
A
LYS
11
60.86
103.59
17
A
ARG
16
60.80
-177.22
17
A
VAL
27
53.89
101.47
17
A
ALA
28
-45.09
-81.25
17
A
ASP
31
-135.55
-52.15
17
A
ARG
134
-55.28
1.16
17
A
ASP
135
-161.15
25.36
17
A
ASP
138
-69.79
93.54
18
A
PRO
4
-64.40
-83.47
18
A
ARG
5
53.52
99.01
18
A
ARG
6
-161.18
-66.07
18
A
TYR
9
68.22
97.43
18
A
LYS
11
59.64
81.37
18
A
ARG
14
60.82
93.56
18
A
ASP
25
-45.96
-81.98
18
A
TYR
26
68.92
-67.19
18
A
VAL
27
162.68
-27.80
18
A
ALA
28
68.76
-174.65
18
A
PHE
58
-55.40
92.25
18
A
ARG
60
-96.84
33.04
18
A
MET
83
66.96
-79.37
18
A
GLU
105
-164.36
115.04
18
A
ARG
134
40.40
-102.44
18
A
ASP
135
-103.47
44.72
19
A
ARG
6
-142.90
31.74
19
A
ARG
16
60.88
-179.85
19
A
LEU
17
-162.83
109.81
19
A
TYR
26
-177.04
-49.31
19
A
VAL
27
126.47
97.17
19
A
PHE
58
-55.31
92.45
19
A
ARG
60
-97.41
32.97
19
A
ARG
82
63.85
134.63
19
A
LYS
87
-133.25
-66.12
19
A
ARG
134
-46.62
89.92
19
A
ASP
135
71.79
36.40
20
A
LEU
2
-176.47
47.35
20
A
PRO
4
-53.35
170.44
20
A
ARG
5
-158.20
72.60
20
A
LYS
8
62.44
147.59
20
A
ALA
28
71.99
-68.46
20
A
ARG
60
-97.44
33.03
20
A
ARG
82
-134.88
-71.94
20
A
ASN
89
36.16
87.48
20
A
GLU
105
-167.81
118.74
20
A
ARG
134
-45.80
88.07
20
A
ASP
135
71.86
32.30
21
A
ARG
6
62.64
118.62
21
A
ARG
16
63.17
141.02
21
A
ASP
25
-81.48
-71.56
21
A
TYR
26
63.67
82.58
21
A
VAL
27
49.04
-82.53
21
A
ALA
28
84.40
-53.36
21
A
PHE
58
-55.34
101.07
21
A
ASP
71
-134.46
-51.91
21
A
ARG
82
-166.48
-73.16
21
A
GLU
91
-95.57
40.84
21
A
ARG
134
-59.51
4.23
21
A
ASP
135
-161.79
23.48
22
A
LYS
11
60.29
82.54
22
A
ARG
14
-161.20
89.81
22
A
LEU
17
46.23
87.42
22
A
ASP
25
-57.85
87.15
22
A
VAL
27
48.11
-85.65
22
A
ALA
28
56.82
167.57
22
A
PHE
29
66.13
-81.84
22
A
ARG
60
-98.21
33.03
22
A
ASP
71
-134.70
-47.86
22
A
GLU
80
46.14
-169.63
22
A
MET
83
-151.70
-67.49
22
A
GLU
91
-95.95
41.73
22
A
ARG
134
-60.59
10.35
22
A
ASP
135
-165.33
22.43
23
A
ARG
6
-176.50
140.67
23
A
TYR
9
59.74
-179.27
23
A
ARG
16
61.19
153.57
23
A
THR
21
-67.99
95.92
23
A
VAL
27
-27.46
105.53
23
A
ALA
28
-58.73
-77.94
23
A
PHE
58
-56.60
97.71
23
A
ARG
60
-97.71
33.04
23
A
LYS
76
-109.69
-156.01
23
A
GLU
105
-164.36
115.06
23
A
ARG
134
40.79
-101.91
23
A
ASP
135
-106.81
45.29
24
A
ARG
14
-102.28
-66.15
24
A
VAL
27
-158.01
-78.56
24
A
PHE
29
171.66
135.23
24
A
PHE
58
-53.00
94.35
24
A
ARG
60
-98.27
32.89
24
A
ASP
71
-145.73
-48.31
24
A
LYS
76
-119.60
53.67
24
A
GLU
80
61.18
90.70
24
A
ARG
82
63.90
-79.14
24
A
MET
83
-139.40
-46.60
24
A
GLU
91
-91.07
51.48
24
A
ARG
134
-47.00
89.41
25
A
LEU
2
-123.23
-64.15
25
A
PRO
4
-55.26
97.16
25
A
LYS
22
62.32
149.80
25
A
ASP
25
-58.71
-74.83
25
A
TYR
26
62.37
119.00
25
A
VAL
27
-30.27
120.04
25
A
PHE
29
63.24
149.19
25
A
ARG
60
-96.81
33.09
25
A
ASP
71
-148.16
-52.15
25
A
LYS
76
-104.97
-152.18
25
A
PRO
78
-90.43
38.19
25
A
GLU
80
59.19
89.76
25
A
MET
83
-172.84
-41.71
25
A
GLU
91
-93.95
46.01
25
A
GLU
105
-160.43
118.97
25
A
ARG
134
-46.76
88.72
26
A
ARG
6
61.10
76.71
26
A
TYR
9
-161.54
49.28
26
A
ARG
16
61.60
153.10
26
A
THR
21
-156.90
-45.38
26
A
VAL
27
-29.30
-74.84
26
A
ALA
28
65.79
151.98
26
A
PHE
29
64.71
-79.32
26
A
LYS
76
-153.06
33.34
26
A
GLU
80
-162.45
-49.03
26
A
MET
83
-66.30
-179.66
26
A
LYS
87
-145.67
35.75
26
A
GLU
91
-93.82
40.60
26
A
GLU
105
-167.26
115.86
26
A
ARG
134
-58.43
5.94
26
A
ASP
135
-162.37
23.50
27
A
ARG
5
-142.63
47.29
27
A
ARG
6
60.74
171.74
27
A
ARG
14
-165.47
-43.20
27
A
TYR
26
-173.96
-67.03
27
A
VAL
27
161.04
-28.44
27
A
ALA
28
68.10
-75.81
27
A
PHE
58
-54.08
105.66
27
A
ARG
60
-99.17
33.11
27
A
ARG
82
64.68
165.45
27
A
ARG
134
-55.43
-0.29
27
A
ASP
135
-162.77
27.37
28
A
PRO
4
-57.49
-160.97
28
A
ARG
5
60.46
104.09
28
A
ARG
6
-177.38
123.06
28
A
LYS
8
-151.56
78.42
28
A
VAL
27
-31.82
-78.23
28
A
ALA
28
54.74
171.73
28
A
PHE
29
62.42
-81.17
28
A
PHE
58
-53.85
106.93
28
A
ASP
71
-154.73
-52.31
28
A
LEU
79
-59.59
104.54
28
A
ARG
82
60.48
94.33
28
A
LYS
87
-98.64
30.91
28
A
GLU
91
-95.99
40.89
28
A
ARG
134
-42.49
86.68
28
A
ASP
138
-59.46
107.49
29
A
LEU
2
-104.55
51.65
29
A
PRO
4
-53.34
-173.09
29
A
LYS
11
-162.56
110.59
29
A
ARG
14
62.48
-80.18
29
A
THR
21
-131.71
-45.21
29
A
VAL
27
43.86
-85.55
29
A
ALA
28
79.72
-69.34
29
A
ARG
60
-97.18
32.98
29
A
ASP
71
-143.38
29.00
29
A
ARG
82
60.61
178.66
29
A
MET
83
60.27
80.45
29
A
LYS
87
-163.63
-54.11
29
A
ASN
89
38.67
86.54
29
A
GLU
91
-95.55
43.05
29
A
ARG
134
-56.13
1.84
29
A
ASP
135
-162.02
25.52
30
A
ASP
25
-59.61
-177.44
30
A
TYR
26
-108.24
-98.94
30
A
VAL
27
-169.23
-77.05
30
A
ALA
28
56.46
167.07
30
A
PHE
29
66.01
-82.19
30
A
PHE
58
-51.47
108.08
30
A
ARG
60
-98.25
33.00
30
A
ASP
71
-160.02
27.62
30
A
MET
83
60.04
107.55
30
A
LYS
87
-140.52
34.01
30
A
ARG
134
-47.73
90.13
30
A
ASP
135
73.11
38.35
solution structure of ribosomal protein L16 from thermus thermophilus HB8
1
N
N
A
ALA
44
A
ALA
44
HELX_P
A
HIS
57
A
HIS
57
1
1
14
A
GLU
111
A
GLU
111
HELX_P
A
LYS
124
A
LYS
124
1
2
14
RIBOSOME
MIXED ALPHA/BETA, RIBOSOME, structural genomics, RIKEN Structural Genomics/Proteomics Initiative, RSGI
RL16_THET8
UNP
1
P60489
1
141
1WKI
1
141
P60489
A
1
1
141
4
3
3
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
LYS
63
A
LYS
63
A
PHE
65
A
PHE
65
A
PHE
104
A
PHE
104
A
ALA
107
A
ALA
107
A
TYR
32
A
TYR
32
A
ALA
36
A
ALA
36
A
THR
129
A
THR
129
A
ARG
133
A
ARG
133
A
THR
129
A
THR
129
A
ARG
133
A
ARG
133
A
TYR
32
A
TYR
32
A
ALA
36
A
ALA
36
A
ARG
101
A
ARG
101
A
VAL
102
A
VAL
102
A
ALA
40
A
ALA
40
A
THR
43
A
THR
43
A
GLY
92
A
GLY
92
A
VAL
97
A
VAL
97
A
LYS
72
A
LYS
72
A
TYR
74
A
TYR
74
1
P 1