0.01643 0.00000 0.000000 0.00000 0.01643 0.000000 0.00000 0.00000 0.012570 0.0000 0.0000 0.0000 Shionyu-Mitsuyama, C. Ito, Y. Konno, A. Miwa, Y. Ogawa, T. Muramoto, K. Shirai, T. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.0 90.0 90.0 60.83 60.83 79.55 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C6 H13 N O4 S 195.237 2-(N-MORPHOLINO)-ETHANESULFONIC ACID non-polymer C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK J.Mol.Biol. JMOBAK 0070 0022-2836 347 385 397 10.1016/j.jmb.2005.01.027 15740748 In vitro evolutionary thermostabilization of congerin II: a limited reproduction of natural protein evolution by artificial selection pressure 2005 10.2210/pdb1wlc/pdb pdb_00001wlc 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 IMAGE PLATE 2002-09-17 RIGAKU RAXIS IV SINGLE WAVELENGTH M x-ray 1 1.54 1.0 1.54 ROTATING ANODE RIGAKU RU300 15290.078 Congerin II Y16S/T88I 1 man polymer 195.237 2-(N-MORPHOLINO)-ETHANESULFONIC ACID 1 syn non-polymer 18.015 water 93 nat water Beta-galactoside-binding lectin 2 no no SDRAEVRNIPFKLGMSLTVGGVVNSNATRFSINVGESTDSIAMHMDHRFSYGADQNVLVLNSLVHNVGWQQEERSKKFPF TKGDHFQITITFDTHTFYIQLSNGETVEFPNRNKDAAFNLIYLAGDARLTFVRLE SDRAEVRNIPFKLGMSLTVGGVVNSNATRFSINVGESTDSIAMHMDHRFSYGADQNVLVLNSLVHNVGWQQEERSKKFPF TKGDHFQITITFDTHTFYIQLSNGETVEFPNRNKDAAFNLIYLAGDARLTFVRLE A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n whitespotted conger Conger Escherichia sample 7943 Conger myriaster 562 Escherichia coli PLASMID pTV118N 1 2.41 48.89 VAPOR DIFFUSION, HANGING DROP 6.5 0.8M magnesium sulfate, 0.05M Mes, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K 291 database_2 struct_ref_seq_dif struct_site repository Initial release Version format compliance Version format compliance Derived calculations Database references Derived calculations 1 0 2005-06-07 1 1 2008-04-30 1 2 2011-07-13 1 3 2015-02-11 1 4 2021-11-10 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Congerin II T88I single mutant structure of wild type congerin II PDBJ Y PDBJ 2004-06-22 REL MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HOH water MES 777 2 MES MES 777 A HOH 801 3 HOH HOH 801 A HOH 802 3 HOH HOH 802 A HOH 803 3 HOH HOH 803 A HOH 804 3 HOH HOH 804 A HOH 805 3 HOH HOH 805 A HOH 806 3 HOH HOH 806 A HOH 807 3 HOH HOH 807 A HOH 808 3 HOH HOH 808 A HOH 809 3 HOH HOH 809 A HOH 810 3 HOH HOH 810 A HOH 811 3 HOH HOH 811 A HOH 812 3 HOH HOH 812 A HOH 813 3 HOH HOH 813 A HOH 814 3 HOH HOH 814 A HOH 815 3 HOH HOH 815 A HOH 816 3 HOH HOH 816 A HOH 817 3 HOH HOH 817 A HOH 818 3 HOH HOH 818 A HOH 819 3 HOH HOH 819 A HOH 820 3 HOH HOH 820 A HOH 821 3 HOH HOH 821 A HOH 822 3 HOH HOH 822 A HOH 823 3 HOH HOH 823 A HOH 824 3 HOH HOH 824 A HOH 825 3 HOH HOH 825 A HOH 826 3 HOH HOH 826 A HOH 827 3 HOH HOH 827 A HOH 828 3 HOH HOH 828 A HOH 829 3 HOH HOH 829 A HOH 830 3 HOH HOH 830 A HOH 831 3 HOH HOH 831 A HOH 832 3 HOH HOH 832 A HOH 833 3 HOH HOH 833 A HOH 834 3 HOH HOH 834 A HOH 835 3 HOH HOH 835 A HOH 836 3 HOH HOH 836 A HOH 837 3 HOH HOH 837 A HOH 838 3 HOH HOH 838 A HOH 839 3 HOH HOH 839 A HOH 840 3 HOH HOH 840 A HOH 841 3 HOH HOH 841 A HOH 842 3 HOH HOH 842 A HOH 843 3 HOH HOH 843 A HOH 844 3 HOH HOH 844 A HOH 845 3 HOH HOH 845 A HOH 846 3 HOH HOH 846 A HOH 847 3 HOH HOH 847 A HOH 848 3 HOH HOH 848 A HOH 849 3 HOH HOH 849 A HOH 850 3 HOH HOH 850 A HOH 851 3 HOH HOH 851 A HOH 852 3 HOH HOH 852 A HOH 853 3 HOH HOH 853 A HOH 854 3 HOH HOH 854 A HOH 855 3 HOH HOH 855 A HOH 856 3 HOH HOH 856 A HOH 857 3 HOH HOH 857 A HOH 858 3 HOH HOH 858 A HOH 859 3 HOH HOH 859 A HOH 860 3 HOH HOH 860 A HOH 861 3 HOH HOH 861 A HOH 862 3 HOH HOH 862 A HOH 863 3 HOH HOH 863 A HOH 864 3 HOH HOH 864 A HOH 865 3 HOH HOH 865 A HOH 866 3 HOH HOH 866 A HOH 867 3 HOH HOH 867 A HOH 868 3 HOH HOH 868 A HOH 869 3 HOH HOH 869 A HOH 870 3 HOH HOH 870 A HOH 871 3 HOH HOH 871 A HOH 872 3 HOH HOH 872 A HOH 873 3 HOH HOH 873 A HOH 874 3 HOH HOH 874 A HOH 875 3 HOH HOH 875 A HOH 876 3 HOH HOH 876 A HOH 877 3 HOH HOH 877 A HOH 878 3 HOH HOH 878 A HOH 879 3 HOH HOH 879 A HOH 880 3 HOH HOH 880 A HOH 881 3 HOH HOH 881 A HOH 882 3 HOH HOH 882 A HOH 883 3 HOH HOH 883 A HOH 884 3 HOH HOH 884 A HOH 885 3 HOH HOH 885 A HOH 886 3 HOH HOH 886 A HOH 887 3 HOH HOH 887 A HOH 888 3 HOH HOH 888 A HOH 889 3 HOH HOH 889 A HOH 890 3 HOH HOH 890 A HOH 891 3 HOH HOH 891 A HOH 892 3 HOH HOH 892 A HOH 893 3 HOH HOH 893 A n 1 1 A ASP 2 n 2 ASP 2 A ARG 3 n 3 ARG 3 A ALA 4 n 4 ALA 4 A GLU 5 n 5 GLU 5 A VAL 6 n 6 VAL 6 A ARG 7 n 7 ARG 7 A ASN 8 n 8 ASN 8 A ILE 9 n 9 ILE 9 A PRO 10 n 10 PRO 10 A PHE 11 n 11 PHE 11 A LYS 12 n 12 LYS 12 A LEU 13 n 13 LEU 13 A GLY 14 n 14 GLY 14 A MET 15 n 15 MET 15 A SER 16 n 16 SER 16 A LEU 17 n 17 LEU 17 A THR 18 n 18 THR 18 A VAL 19 n 19 VAL 19 A GLY 20 n 20 GLY 20 A GLY 21 n 21 GLY 21 A VAL 22 n 22 VAL 22 A VAL 23 n 23 VAL 23 A ASN 24 n 24 ASN 24 A SER 25 n 25 SER 25 A ASN 26 n 26 ASN 26 A ALA 27 n 27 ALA 27 A THR 28 n 28 THR 28 A ARG 29 n 29 ARG 29 A PHE 30 n 30 PHE 30 A SER 31 n 31 SER 31 A ILE 32 n 32 ILE 32 A ASN 33 n 33 ASN 33 A VAL 34 n 34 VAL 34 A GLY 35 n 35 GLY 35 A GLU 36 n 36 GLU 36 A SER 37 n 37 SER 37 A THR 38 n 38 THR 38 A ASP 39 n 39 ASP 39 A SER 40 n 40 SER 40 A ILE 41 n 41 ILE 41 A ALA 42 n 42 ALA 42 A MET 43 n 43 MET 43 A HIS 44 n 44 HIS 44 A MET 45 n 45 MET 45 A ASP 46 n 46 ASP 46 A HIS 47 n 47 HIS 47 A ARG 48 n 48 ARG 48 A PHE 49 n 49 PHE 49 A SER 50 n 50 SER 50 A TYR 51 n 51 TYR 51 A GLY 52 n 52 GLY 52 A ALA 53 n 53 ALA 53 A ASP 54 n 54 ASP 54 A GLN 55 n 55 GLN 55 A ASN 56 n 56 ASN 56 A VAL 57 n 57 VAL 57 A LEU 58 n 58 LEU 58 A VAL 59 n 59 VAL 59 A LEU 60 n 60 LEU 60 A ASN 61 n 61 ASN 61 A SER 62 n 62 SER 62 A LEU 63 n 63 LEU 63 A VAL 64 n 64 VAL 64 A HIS 65 n 65 HIS 65 A ASN 66 n 66 ASN 66 A VAL 67 n 67 VAL 67 A GLY 68 n 68 GLY 68 A TRP 69 n 69 TRP 69 A GLN 70 n 70 GLN 70 A GLN 71 n 71 GLN 71 A GLU 72 n 72 GLU 72 A GLU 73 n 73 GLU 73 A ARG 74 n 74 ARG 74 A SER 75 n 75 SER 75 A LYS 76 n 76 LYS 76 A LYS 77 n 77 LYS 77 A PHE 78 n 78 PHE 78 A PRO 79 n 79 PRO 79 A PHE 80 n 80 PHE 80 A THR 81 n 81 THR 81 A LYS 82 n 82 LYS 82 A GLY 83 n 83 GLY 83 A ASP 84 n 84 ASP 84 A HIS 85 n 85 HIS 85 A PHE 86 n 86 PHE 86 A GLN 87 n 87 GLN 87 A ILE 88 n 88 ILE 88 A THR 89 n 89 THR 89 A ILE 90 n 90 ILE 90 A THR 91 n 91 THR 91 A PHE 92 n 92 PHE 92 A ASP 93 n 93 ASP 93 A THR 94 n 94 THR 94 A HIS 95 n 95 HIS 95 A THR 96 n 96 THR 96 A PHE 97 n 97 PHE 97 A TYR 98 n 98 TYR 98 A ILE 99 n 99 ILE 99 A GLN 100 n 100 GLN 100 A LEU 101 n 101 LEU 101 A SER 102 n 102 SER 102 A ASN 103 n 103 ASN 103 A GLY 104 n 104 GLY 104 A GLU 105 n 105 GLU 105 A THR 106 n 106 THR 106 A VAL 107 n 107 VAL 107 A GLU 108 n 108 GLU 108 A PHE 109 n 109 PHE 109 A PRO 110 n 110 PRO 110 A ASN 111 n 111 ASN 111 A ARG 112 n 112 ARG 112 A ASN 113 n 113 ASN 113 A LYS 114 n 114 LYS 114 A ASP 115 n 115 ASP 115 A ALA 116 n 116 ALA 116 A ALA 117 n 117 ALA 117 A PHE 118 n 118 PHE 118 A ASN 119 n 119 ASN 119 A LEU 120 n 120 LEU 120 A ILE 121 n 121 ILE 121 A TYR 122 n 122 TYR 122 A LEU 123 n 123 LEU 123 A ALA 124 n 124 ALA 124 A GLY 125 n 125 GLY 125 A ASP 126 n 126 ASP 126 A ALA 127 n 127 ALA 127 A ARG 128 n 128 ARG 128 A LEU 129 n 129 LEU 129 A THR 130 n 130 THR 130 A PHE 131 n 131 PHE 131 A VAL 132 n 132 VAL 132 A ARG 133 n 133 ARG 133 A LEU 134 n 134 LEU 134 A GLU 135 n 135 GLU 135 A author_and_software_defined_assembly PISA 2 dimeric 1720 -5 12210 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 7_555 y,x,-z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 A N ASN 8 A N ASN 8 A O ASN 119 A O ASN 119 A O LEU 120 A O LEU 120 A N GLY 35 A N GLY 35 A N GLU 36 A N GLU 36 A O SER 40 A O SER 40 A N ASP 46 A N ASP 46 A O VAL 59 A O VAL 59 A N VAL 64 A N VAL 64 A O GLY 68 A O GLY 68 A N ASN 8 A N ASN 8 A O ASN 119 A O ASN 119 A O LEU 120 A O LEU 120 A N GLY 35 A N GLY 35 A N GLU 36 A N GLU 36 A O SER 40 A O SER 40 A N ASP 46 A N ASP 46 A O VAL 59 A O VAL 59 A N LEU 60 A N LEU 60 A O GLU 73 A O GLU 73 A O PHE 109 A O PHE 109 A N PHE 97 A N PHE 97 A O TYR 98 A O TYR 98 A N THR 91 A N THR 91 A O ILE 90 A O ILE 90 A N LEU 17 A N LEU 17 A N THR 18 A N THR 18 A O ARG 133 A O ARG 133 1 A SER 1 A SER 1 1 Y 1 -8.79 1.20 123.30 114.51 A A A OE1 CD OE2 GLU GLU GLU 5 5 5 N 1 9.08 1.40 123.60 132.68 A A A CD NE CZ ARG ARG ARG 29 29 29 N 1 3.93 0.50 120.30 124.23 A A A NE CZ NH1 ARG ARG ARG 29 29 29 N 1 -4.30 0.50 120.30 116.00 A A A NE CZ NH1 ARG ARG ARG 74 74 74 N 1 A VAL 67 -128.77 -58.81 1 A GLN 70 -93.41 -144.51 1 A ASP 93 -124.30 -167.34 0.223 0.182 2.0 8.0 480 9452 random 1 MOLECULAR REPLACEMENT 2.0 8.0 93 1178 12 0 1073 2.0 40.0 1WLC 154250 10418 0.058 1 95.1 data reduction DENZO data scaling SCALEPACK phasing AMoRE refinement CNS 1.1 Congerin II Y16S/T88I double mutant 1 N N 2 N N 3 N N SUGAR BINDING PROTEIN galectin, beta-sandwich, thermostability, double-mutant, SUGAR BINDING PROTEIN LEG2_CONMY UNP 1 1 Q9YIC2 SDRAEVRNIPFKLGMYLTVGGVVNSNATRFSINVGESTDSIAMHMDHRFSYGADQNVLVLNSLVHNVGWQQEERSKKFPF TKGDHFQTTITFDTHTFYIQLSNGETVEFPNRNKDAAFNLIYLAGDARLTFVRLE 1 135 1WLC 1 135 Q9YIC2 A 1 1 135 1 TYR engineered mutation SER 16 1WLC A Q9YIC2 UNP 16 16 1 THR engineered mutation ILE 88 1WLC A Q9YIC2 UNP 88 88 6 6 5 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A ALA 4 A ALA 4 A LYS 12 A LYS 12 A ALA 117 A ALA 117 A GLY 125 A GLY 125 A ARG 29 A ARG 29 A SER 37 A SER 37 A SER 40 A SER 40 A TYR 51 A TYR 51 A ASP 54 A ASP 54 A VAL 64 A VAL 64 A GLY 68 A GLY 68 A TRP 69 A TRP 69 A ALA 4 A ALA 4 A LYS 12 A LYS 12 A ALA 117 A ALA 117 A GLY 125 A GLY 125 A ARG 29 A ARG 29 A SER 37 A SER 37 A SER 40 A SER 40 A TYR 51 A TYR 51 A ASP 54 A ASP 54 A VAL 64 A VAL 64 A GLU 73 A GLU 73 A SER 75 A SER 75 A THR 106 A THR 106 A PRO 110 A PRO 110 A THR 96 A THR 96 A GLN 100 A GLN 100 A HIS 85 A HIS 85 A PHE 92 A PHE 92 A LEU 17 A LEU 17 A VAL 23 A VAL 23 A ALA 127 A ALA 127 A LEU 134 A LEU 134 BINDING SITE FOR RESIDUE MES A 777 A MES 777 Software 7 A ARG 3 A ARG 3 7 1_555 A THR 38 A THR 38 7 1_555 A ASP 39 A ASP 39 7 2_665 A HIS 65 A HIS 65 7 2_665 A TRP 69 A TRP 69 7 1_555 A TYR 122 A TYR 122 7 1_555 A ALA 124 A ALA 124 7 1_555 94 P 42 21 2