1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Mizuguchi, M.
Kamata, S.
Kawabata, S.
Fujitani, N.
Kawano, K.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
H2 N
16.023
AMINO GROUP
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
to be published
0353
Solution structure of tachyplesin I in dodecylphosphocholine
10.2210/pdb1wo1/pdb
pdb_00001wo1
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
2272.814
Tachyplesin I
1
nat
polymer
no
yes
KWCFRVCYRGICYRRCR(NH2)
KWCFRVCYRGICYRRCRX
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Tachypleus
sample
6853
Tachypleus tridentatus
HEMOCYTE
database_2
pdbx_struct_assembly
pdbx_struct_oper_list
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
1
0
2005-08-09
1
1
2008-04-30
1
2
2011-07-13
1
3
2022-03-02
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
The same protein in H2O
PDBJ
Y
PDBJ
2004-08-11
REL
1
2D NOESY
2D TOCSY
DQF-COSY
3.6
AMBIENT
303
K
DISTANCE GEOMETRY, SIMULATED ANNEALING
minimized average structure
1.0MM TACHYPLESIN, 60MM DPC
structure solution
X-PLOR
3.1
processing
NMRPipe
data analysis
XEASY
refinement
X-PLOR
3.1
500
Bruker
DMX
LYS
1
n
1
LYS
1
A
TRP
2
n
2
TRP
2
A
CYS
3
n
3
CYS
3
A
PHE
4
n
4
PHE
4
A
ARG
5
n
5
ARG
5
A
VAL
6
n
6
VAL
6
A
CYS
7
n
7
CYS
7
A
TYR
8
n
8
TYR
8
A
ARG
9
n
9
ARG
9
A
GLY
10
n
10
GLY
10
A
ILE
11
n
11
ILE
11
A
CYS
12
n
12
CYS
12
A
TYR
13
n
13
TYR
13
A
ARG
14
n
14
ARG
14
A
ARG
15
n
15
ARG
15
A
CYS
16
n
16
CYS
16
A
ARG
17
n
17
ARG
17
A
ARG
17
n
18
NH2
18
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
TYR
8
A
N
TYR
8
A
O
ILE
11
A
O
ILE
11
1
A
ARG
5
0.251
SIDE CHAIN
1
A
ARG
9
0.318
SIDE CHAIN
1
A
ARG
14
0.313
SIDE CHAIN
1
A
ARG
15
0.306
SIDE CHAIN
1
A
ARG
17
0.317
SIDE CHAIN
1
A
CYS
3
-128.33
-57.47
1
A
ARG
9
-9.25
-64.28
minimized average
Tachyplesin I in dodecylphosphocholine micelles
1
N
N
disulf
2.021
A
CYS
3
A
SG
CYS
3
1_555
A
CYS
16
A
SG
CYS
16
1_555
disulf
2.022
A
CYS
7
A
SG
CYS
7
1_555
A
CYS
12
A
SG
CYS
12
1_555
covale
1.307
both
A
ARG
17
A
C
ARG
17
1_555
A
NH2
18
A
N
NH2
18
1_555
ANTIBIOTIC, ANTIMICROBIAL PROTEIN
TACHYPLESIN, DPC, DODECYLPHOSPHOCHOL, ANTIBIOTIC, ANTIMICROBIAL PROTEIN
TAC1_TACTR
UNP
1
24
P14213
KWCFRVCYRGICYRRCR
24
40
1WO1
1
17
P14213
A
1
1
17
2
anti-parallel
A
PHE
4
A
PHE
4
A
TYR
8
A
TYR
8
A
ILE
11
A
ILE
11
A
ARG
15
A
ARG
15
BINDING SITE FOR RESIDUE NH2 A 18
A
NH2
18
Software
1
A
ARG
17
A
ARG
17
1
1_555