0.01771
0.00000
0.00000
0.00000
0.01353
0.00000
0.00000
0.00000
0.03285
0.00000
0.00000
0.00000
Saijo, S.
Yamada, Y.
Sato, T.
Tanaka, N.
Matsui, T.
Sazaki, G.
Nakajima, K.
Matsuura, Y.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
56.44
73.73
30.43
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cl -1
35.453
CHLORIDE ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
61
207
217
10.1107/S0907444904030926
15735330
Structural consequences of hen egg-white lysozyme orthorhombic crystal growth in a high magnetic field: validation of X-ray diffraction intensity, conformational energy searching and quantitative analysis of B factors and mosaicity.
2005
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
296.0
1
1
DIFFRACTOMETER
1999-06-20
WEISSENBERG
DIFFRACTOMETER
1999-10-20
CUSTOM-MADE
Si 111 CHANNEL
SINGLE WAVELENGTH
M
x-ray
1
1.0000
1.0
BL-18B
Photon Factory
1.0000
SYNCHROTRON
PHOTON FACTORY BEAMLINE BL-18B
BL-18B
Photon Factory
1.0000
SYNCHROTRON
PHOTON FACTORY BEAMLINE BL-18B
14331.160
Lysozyme C
3.2.1.17
1
nat
polymer
35.453
CHLORIDE ION
1
syn
non-polymer
18.015
water
88
nat
water
1,4-beta-N-acetylmuramidase C, Allergen Gal d 4, Gal d IV
no
no
KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPC
SALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL
KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPC
SALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
chicken
Gallus
sample
egg
cytoplasm(white)
9031
Gallus gallus
8
2.26
45.52
in the Earth's magnetic field
4.5
NaCl, sodium acetate, pH 4.5, in the Earth's magnetic field, temperature 313K
313
repository
Initial release
Version format compliance
Version format compliance
1
0
2004-12-14
1
1
2008-04-30
1
2
2011-07-13
The 1.33 A resolution structure of the same protein
the same protein crystal formed in a High Magnetic Field of 10T
PDBJ
Y
PDBJ
2004-11-25
REL
REL
CL
CHLORIDE ION
HOH
water
IUM
130
2
CL
CL
130
A
WAT
131
3
HOH
HOH
131
A
WAT
132
3
HOH
HOH
132
A
WAT
133
3
HOH
HOH
133
A
WAT
134
3
HOH
HOH
134
A
WAT
135
3
HOH
HOH
135
A
WAT
136
3
HOH
HOH
136
A
WAT
137
3
HOH
HOH
137
A
WAT
138
3
HOH
HOH
138
A
WAT
139
3
HOH
HOH
139
A
WAT
140
3
HOH
HOH
140
A
WAT
141
3
HOH
HOH
141
A
WAT
142
3
HOH
HOH
142
A
WAT
143
3
HOH
HOH
143
A
WAT
144
3
HOH
HOH
144
A
WAT
145
3
HOH
HOH
145
A
WAT
146
3
HOH
HOH
146
A
WAT
147
3
HOH
HOH
147
A
WAT
148
3
HOH
HOH
148
A
WAT
149
3
HOH
HOH
149
A
WAT
150
3
HOH
HOH
150
A
WAT
151
3
HOH
HOH
151
A
WAT
152
3
HOH
HOH
152
A
WAT
153
3
HOH
HOH
153
A
WAT
154
3
HOH
HOH
154
A
WAT
155
3
HOH
HOH
155
A
WAT
156
3
HOH
HOH
156
A
WAT
157
3
HOH
HOH
157
A
WAT
158
3
HOH
HOH
158
A
WAT
159
3
HOH
HOH
159
A
WAT
160
3
HOH
HOH
160
A
WAT
161
3
HOH
HOH
161
A
WAT
162
3
HOH
HOH
162
A
WAT
163
3
HOH
HOH
163
A
WAT
164
3
HOH
HOH
164
A
WAT
165
3
HOH
HOH
165
A
WAT
166
3
HOH
HOH
166
A
WAT
167
3
HOH
HOH
167
A
WAT
168
3
HOH
HOH
168
A
WAT
169
3
HOH
HOH
169
A
WAT
170
3
HOH
HOH
170
A
WAT
171
3
HOH
HOH
171
A
WAT
172
3
HOH
HOH
172
A
WAT
173
3
HOH
HOH
173
A
WAT
174
3
HOH
HOH
174
A
WAT
175
3
HOH
HOH
175
A
WAT
176
3
HOH
HOH
176
A
WAT
177
3
HOH
HOH
177
A
WAT
178
3
HOH
HOH
178
A
WAT
179
3
HOH
HOH
179
A
WAT
180
3
HOH
HOH
180
A
WAT
181
3
HOH
HOH
181
A
WAT
182
3
HOH
HOH
182
A
WAT
183
3
HOH
HOH
183
A
WAT
184
3
HOH
HOH
184
A
WAT
185
3
HOH
HOH
185
A
WAT
186
3
HOH
HOH
186
A
WAT
187
3
HOH
HOH
187
A
WAT
188
3
HOH
HOH
188
A
WAT
189
3
HOH
HOH
189
A
WAT
190
3
HOH
HOH
190
A
WAT
191
3
HOH
HOH
191
A
WAT
192
3
HOH
HOH
192
A
WAT
193
3
HOH
HOH
193
A
WAT
194
3
HOH
HOH
194
A
WAT
195
3
HOH
HOH
195
A
WAT
196
3
HOH
HOH
196
A
WAT
197
3
HOH
HOH
197
A
WAT
198
3
HOH
HOH
198
A
WAT
199
3
HOH
HOH
199
A
WAT
200
3
HOH
HOH
200
A
WAT
201
3
HOH
HOH
201
A
WAT
202
3
HOH
HOH
202
A
WAT
203
3
HOH
HOH
203
A
WAT
204
3
HOH
HOH
204
A
WAT
205
3
HOH
HOH
205
A
WAT
206
3
HOH
HOH
206
A
WAT
207
3
HOH
HOH
207
A
WAT
208
3
HOH
HOH
208
A
WAT
209
3
HOH
HOH
209
A
WAT
210
3
HOH
HOH
210
A
WAT
211
3
HOH
HOH
211
A
WAT
212
3
HOH
HOH
212
A
WAT
213
3
HOH
HOH
213
A
WAT
214
3
HOH
HOH
214
A
WAT
215
3
HOH
HOH
215
A
WAT
216
3
HOH
HOH
216
A
WAT
217
3
HOH
HOH
217
A
WAT
218
3
HOH
HOH
218
A
LYS
1
n
1
LYS
1
A
VAL
2
n
2
VAL
2
A
PHE
3
n
3
PHE
3
A
GLY
4
n
4
GLY
4
A
ARG
5
n
5
ARG
5
A
CYS
6
n
6
CYS
6
A
GLU
7
n
7
GLU
7
A
LEU
8
n
8
LEU
8
A
ALA
9
n
9
ALA
9
A
ALA
10
n
10
ALA
10
A
ALA
11
n
11
ALA
11
A
MET
12
n
12
MET
12
A
LYS
13
n
13
LYS
13
A
ARG
14
n
14
ARG
14
A
HIS
15
n
15
HIS
15
A
GLY
16
n
16
GLY
16
A
LEU
17
n
17
LEU
17
A
ASP
18
n
18
ASP
18
A
ASN
19
n
19
ASN
19
A
TYR
20
n
20
TYR
20
A
ARG
21
n
21
ARG
21
A
GLY
22
n
22
GLY
22
A
TYR
23
n
23
TYR
23
A
SER
24
n
24
SER
24
A
LEU
25
n
25
LEU
25
A
GLY
26
n
26
GLY
26
A
ASN
27
n
27
ASN
27
A
TRP
28
n
28
TRP
28
A
VAL
29
n
29
VAL
29
A
CYS
30
n
30
CYS
30
A
ALA
31
n
31
ALA
31
A
ALA
32
n
32
ALA
32
A
LYS
33
n
33
LYS
33
A
PHE
34
n
34
PHE
34
A
GLU
35
n
35
GLU
35
A
SER
36
n
36
SER
36
A
ASN
37
n
37
ASN
37
A
PHE
38
n
38
PHE
38
A
ASN
39
n
39
ASN
39
A
THR
40
n
40
THR
40
A
GLN
41
n
41
GLN
41
A
ALA
42
n
42
ALA
42
A
THR
43
n
43
THR
43
A
ASN
44
n
44
ASN
44
A
ARG
45
n
45
ARG
45
A
ASN
46
n
46
ASN
46
A
THR
47
n
47
THR
47
A
ASP
48
n
48
ASP
48
A
GLY
49
n
49
GLY
49
A
SER
50
n
50
SER
50
A
THR
51
n
51
THR
51
A
ASP
52
n
52
ASP
52
A
TYR
53
n
53
TYR
53
A
GLY
54
n
54
GLY
54
A
ILE
55
n
55
ILE
55
A
LEU
56
n
56
LEU
56
A
GLN
57
n
57
GLN
57
A
ILE
58
n
58
ILE
58
A
ASN
59
n
59
ASN
59
A
SER
60
n
60
SER
60
A
ARG
61
n
61
ARG
61
A
TRP
62
n
62
TRP
62
A
TRP
63
n
63
TRP
63
A
CYS
64
n
64
CYS
64
A
ASN
65
n
65
ASN
65
A
ASP
66
n
66
ASP
66
A
GLY
67
n
67
GLY
67
A
ARG
68
n
68
ARG
68
A
THR
69
n
69
THR
69
A
PRO
70
n
70
PRO
70
A
GLY
71
n
71
GLY
71
A
SER
72
n
72
SER
72
A
ARG
73
n
73
ARG
73
A
ASN
74
n
74
ASN
74
A
LEU
75
n
75
LEU
75
A
CYS
76
n
76
CYS
76
A
ASN
77
n
77
ASN
77
A
ILE
78
n
78
ILE
78
A
PRO
79
n
79
PRO
79
A
CYS
80
n
80
CYS
80
A
SER
81
n
81
SER
81
A
ALA
82
n
82
ALA
82
A
LEU
83
n
83
LEU
83
A
LEU
84
n
84
LEU
84
A
SER
85
n
85
SER
85
A
SER
86
n
86
SER
86
A
ASP
87
n
87
ASP
87
A
ILE
88
n
88
ILE
88
A
THR
89
n
89
THR
89
A
ALA
90
n
90
ALA
90
A
SER
91
n
91
SER
91
A
VAL
92
n
92
VAL
92
A
ASN
93
n
93
ASN
93
A
CYS
94
n
94
CYS
94
A
ALA
95
n
95
ALA
95
A
LYS
96
n
96
LYS
96
A
LYS
97
n
97
LYS
97
A
ILE
98
n
98
ILE
98
A
VAL
99
n
99
VAL
99
A
SER
100
n
100
SER
100
A
ASP
101
n
101
ASP
101
A
GLY
102
n
102
GLY
102
A
ASN
103
n
103
ASN
103
A
GLY
104
n
104
GLY
104
A
MET
105
n
105
MET
105
A
ASN
106
n
106
ASN
106
A
ALA
107
n
107
ALA
107
A
TRP
108
n
108
TRP
108
A
VAL
109
n
109
VAL
109
A
ALA
110
n
110
ALA
110
A
TRP
111
n
111
TRP
111
A
ARG
112
n
112
ARG
112
A
ASN
113
n
113
ASN
113
A
ARG
114
n
114
ARG
114
A
CYS
115
n
115
CYS
115
A
LYS
116
n
116
LYS
116
A
GLY
117
n
117
GLY
117
A
THR
118
n
118
THR
118
A
ASP
119
n
119
ASP
119
A
VAL
120
n
120
VAL
120
A
GLN
121
n
121
GLN
121
A
ALA
122
n
122
ALA
122
A
TRP
123
n
123
TRP
123
A
ILE
124
n
124
ILE
124
A
ARG
125
n
125
ARG
125
A
GLY
126
n
126
GLY
126
A
CYS
127
n
127
CYS
127
A
ARG
128
n
128
ARG
128
A
LEU
129
n
129
LEU
129
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ASN
44
A
N
ASN
44
A
O
ASP
52
A
O
ASP
52
A
N
TYR
53
A
N
TYR
53
A
O
ILE
58
A
O
ILE
58
1
A
ARG
45
0.159
SIDE CHAIN
1
3.71
0.50
120.30
124.01
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
45
45
45
N
1
3.29
0.50
120.30
123.59
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
61
61
61
N
1
3.03
0.50
120.30
123.33
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
112
112
112
N
1
-3.84
0.50
120.30
116.46
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
114
114
114
A
A
A
N
1
-3.32
0.50
120.30
116.98
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
125
125
125
N
1
A
ARG
68
-140.71
14.51
1
A
ASN
103
-84.70
43.68
0.201
0.173
1.33
16
2000
20095
20095
1
3
MOLECULAR REPLACEMENT
0.18
1.33
16
88
1109
1
0
1020
0.008
0.022
1.33
20
1WTM
21469
20095
3
1
93.6
1.33
1.38
62.4
data reduction
DENZO
data scaling
SCALEPACK
phasing
EPMR
refinement
REFMAC
Lysozyme C (E.C.3.2.1.17)
X-ray structure of HEW Lysozyme Orthorhombic Crystal formed in the Earth's magnetic field
1
N
N
2
N
N
3
N
N
A
GLY
4
A
GLY
4
HELX_P
A
HIS
15
A
HIS
15
1
1
12
A
ASN
19
A
ASN
19
HELX_P
A
TYR
23
A
TYR
23
5
2
5
A
SER
24
A
SER
24
HELX_P
A
ASN
37
A
ASN
37
1
3
14
A
PRO
79
A
PRO
79
HELX_P
A
SER
85
A
SER
85
5
4
7
A
ILE
88
A
ILE
88
HELX_P
A
GLY
102
A
GLY
102
1
5
15
A
ASN
103
A
ASN
103
HELX_P
A
ALA
107
A
ALA
107
5
6
5
A
TRP
108
A
TRP
108
HELX_P
A
CYS
115
A
CYS
115
1
7
8
A
ASP
119
A
ASP
119
HELX_P
A
ARG
125
A
ARG
125
5
8
7
disulf
2.019
A
CYS
6
A
SG
CYS
6
1_555
A
CYS
127
A
SG
CYS
127
1_555
disulf
2.038
A
CYS
30
A
SG
CYS
30
1_555
A
CYS
115
A
SG
CYS
115
1_555
disulf
2.029
A
CYS
64
A
SG
CYS
64
1_555
A
CYS
80
A
SG
CYS
80
1_555
disulf
2.030
A
CYS
76
A
SG
CYS
76
1_555
A
CYS
94
A
SG
CYS
94
1_555
HYDROLASE
Allergen, Hydrolase
LYSC_CHICK
UNP
1
19
P00698
KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPC
SALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL
19
147
1WTM
1
129
P00698
A
1
1
129
3
anti-parallel
anti-parallel
A
THR
43
A
THR
43
A
ARG
45
A
ARG
45
A
THR
51
A
THR
51
A
TYR
53
A
TYR
53
A
ILE
58
A
ILE
58
A
ASN
59
A
ASN
59
BINDING SITE FOR RESIDUE CL A 130
Software
4
A
ASN
65
A
ASN
65
4
1_555
A
ASP
66
A
ASP
66
4
1_555
A
SER
81
A
SER
81
4
1_555
A
ARG
125
A
ARG
125
4
4_467
19
P 21 21 21