0.01768 0.00000 0.00000 0.00000 0.01352 0.00000 0.00000 0.00000 0.03279 0.00000 0.00000 0.00000 Saijo, S. Yamada, Y. Sato, T. Tanaka, N. Matsui, T. Sazaki, G. Nakajima, K. Matsuura, Y. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 56.540 73.830 30.500 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Cl -1 35.453 CHLORIDE ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking DK Acta Crystallogr.,Sect.D ABCRE6 0766 0907-4449 61 207 217 10.1107/S0907444904030926 15735330 Structural consequences of hen egg-white lysozyme orthorhombic crystal growth in a high magnetic field: validation of X-ray diffraction intensity, conformational energy searching and quantitative analysis of B factors and mosaicity. 2005 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 296 1 1 DIFFRACTOMETER 1999-06-21 WEISSENBERG DIFFRACTOMETER 1999-10-20 CUSTOM-MADE Si 111 SINGLE WAVELENGTH M x-ray 1 1.0000 1.0 BL-18B Photon Factory 1.0000 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-18B BL-18B Photon Factory 1.0000 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-18B 14331.160 Lysozyme C 3.2.1.17 1 nat polymer 35.453 CHLORIDE ION 1 syn non-polymer 18.015 water 116 nat water 1,4-beta-N-acetylmuramidase C, Allergen Gal d 4, Gal d IV no no KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPC SALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPC SALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n chicken Gallus sample egg cytoplasm(white) 9031 Gallus gallus 8 2.27 45.81 under a High Magnetic Field of 10T 4.5 NaCl, sodium acetate, pH 4.5, under a High Magnetic Field of 10T, temperature 313K 313 repository Initial release Version format compliance Version format compliance 1 0 2004-12-14 1 1 2008-04-30 1 2 2011-07-13 The 1.33 A resolution structure of the same protein the same protein crystal formed in the Earth's magnetic field of 0T PDBJ Y PDBJ 2004-11-25 REL REL CL CHLORIDE ION HOH water IUM 130 2 CL CL 130 A WAT 131 3 HOH HOH 131 A WAT 132 3 HOH HOH 132 A WAT 133 3 HOH HOH 133 A WAT 134 3 HOH HOH 134 A WAT 135 3 HOH HOH 135 A WAT 136 3 HOH HOH 136 A WAT 137 3 HOH HOH 137 A WAT 138 3 HOH HOH 138 A WAT 139 3 HOH HOH 139 A WAT 140 3 HOH HOH 140 A WAT 141 3 HOH HOH 141 A WAT 142 3 HOH HOH 142 A WAT 143 3 HOH HOH 143 A WAT 144 3 HOH HOH 144 A WAT 145 3 HOH HOH 145 A WAT 146 3 HOH HOH 146 A WAT 147 3 HOH HOH 147 A WAT 148 3 HOH HOH 148 A WAT 149 3 HOH HOH 149 A WAT 150 3 HOH HOH 150 A WAT 151 3 HOH HOH 151 A WAT 152 3 HOH HOH 152 A WAT 153 3 HOH HOH 153 A WAT 154 3 HOH HOH 154 A WAT 155 3 HOH HOH 155 A WAT 156 3 HOH HOH 156 A WAT 157 3 HOH HOH 157 A WAT 158 3 HOH HOH 158 A WAT 159 3 HOH HOH 159 A WAT 160 3 HOH HOH 160 A WAT 161 3 HOH HOH 161 A WAT 162 3 HOH HOH 162 A WAT 163 3 HOH HOH 163 A WAT 164 3 HOH HOH 164 A WAT 165 3 HOH HOH 165 A WAT 166 3 HOH HOH 166 A WAT 167 3 HOH HOH 167 A WAT 168 3 HOH HOH 168 A WAT 169 3 HOH HOH 169 A WAT 170 3 HOH HOH 170 A WAT 171 3 HOH HOH 171 A WAT 172 3 HOH HOH 172 A WAT 173 3 HOH HOH 173 A WAT 174 3 HOH HOH 174 A WAT 175 3 HOH HOH 175 A WAT 176 3 HOH HOH 176 A WAT 177 3 HOH HOH 177 A WAT 178 3 HOH HOH 178 A WAT 179 3 HOH HOH 179 A WAT 180 3 HOH HOH 180 A WAT 181 3 HOH HOH 181 A WAT 182 3 HOH HOH 182 A WAT 183 3 HOH HOH 183 A WAT 184 3 HOH HOH 184 A WAT 185 3 HOH HOH 185 A WAT 186 3 HOH HOH 186 A WAT 187 3 HOH HOH 187 A WAT 188 3 HOH HOH 188 A WAT 189 3 HOH HOH 189 A WAT 190 3 HOH HOH 190 A WAT 191 3 HOH HOH 191 A WAT 192 3 HOH HOH 192 A WAT 193 3 HOH HOH 193 A WAT 194 3 HOH HOH 194 A WAT 195 3 HOH HOH 195 A WAT 196 3 HOH HOH 196 A WAT 197 3 HOH HOH 197 A WAT 198 3 HOH HOH 198 A WAT 199 3 HOH HOH 199 A WAT 200 3 HOH HOH 200 A WAT 201 3 HOH HOH 201 A WAT 202 3 HOH HOH 202 A WAT 203 3 HOH HOH 203 A WAT 204 3 HOH HOH 204 A WAT 205 3 HOH HOH 205 A WAT 206 3 HOH HOH 206 A WAT 207 3 HOH HOH 207 A WAT 208 3 HOH HOH 208 A WAT 209 3 HOH HOH 209 A WAT 210 3 HOH HOH 210 A WAT 211 3 HOH HOH 211 A WAT 212 3 HOH HOH 212 A WAT 213 3 HOH HOH 213 A WAT 214 3 HOH HOH 214 A WAT 215 3 HOH HOH 215 A WAT 216 3 HOH HOH 216 A WAT 217 3 HOH HOH 217 A WAT 218 3 HOH HOH 218 A WAT 219 3 HOH HOH 219 A WAT 220 3 HOH HOH 220 A WAT 221 3 HOH HOH 221 A WAT 222 3 HOH HOH 222 A WAT 223 3 HOH HOH 223 A WAT 224 3 HOH HOH 224 A WAT 225 3 HOH HOH 225 A WAT 226 3 HOH HOH 226 A WAT 227 3 HOH HOH 227 A WAT 228 3 HOH HOH 228 A WAT 229 3 HOH HOH 229 A WAT 230 3 HOH HOH 230 A WAT 231 3 HOH HOH 231 A WAT 232 3 HOH HOH 232 A WAT 233 3 HOH HOH 233 A WAT 234 3 HOH HOH 234 A WAT 235 3 HOH HOH 235 A WAT 236 3 HOH HOH 236 A WAT 237 3 HOH HOH 237 A WAT 238 3 HOH HOH 238 A WAT 239 3 HOH HOH 239 A WAT 240 3 HOH HOH 240 A WAT 241 3 HOH HOH 241 A WAT 242 3 HOH HOH 242 A WAT 243 3 HOH HOH 243 A WAT 244 3 HOH HOH 244 A WAT 245 3 HOH HOH 245 A WAT 246 3 HOH HOH 246 A LYS 1 n 1 LYS 1 A VAL 2 n 2 VAL 2 A PHE 3 n 3 PHE 3 A GLY 4 n 4 GLY 4 A ARG 5 n 5 ARG 5 A CYS 6 n 6 CYS 6 A GLU 7 n 7 GLU 7 A LEU 8 n 8 LEU 8 A ALA 9 n 9 ALA 9 A ALA 10 n 10 ALA 10 A ALA 11 n 11 ALA 11 A MET 12 n 12 MET 12 A LYS 13 n 13 LYS 13 A ARG 14 n 14 ARG 14 A HIS 15 n 15 HIS 15 A GLY 16 n 16 GLY 16 A LEU 17 n 17 LEU 17 A ASP 18 n 18 ASP 18 A ASN 19 n 19 ASN 19 A TYR 20 n 20 TYR 20 A ARG 21 n 21 ARG 21 A GLY 22 n 22 GLY 22 A TYR 23 n 23 TYR 23 A SER 24 n 24 SER 24 A LEU 25 n 25 LEU 25 A GLY 26 n 26 GLY 26 A ASN 27 n 27 ASN 27 A TRP 28 n 28 TRP 28 A VAL 29 n 29 VAL 29 A CYS 30 n 30 CYS 30 A ALA 31 n 31 ALA 31 A ALA 32 n 32 ALA 32 A LYS 33 n 33 LYS 33 A PHE 34 n 34 PHE 34 A GLU 35 n 35 GLU 35 A SER 36 n 36 SER 36 A ASN 37 n 37 ASN 37 A PHE 38 n 38 PHE 38 A ASN 39 n 39 ASN 39 A THR 40 n 40 THR 40 A GLN 41 n 41 GLN 41 A ALA 42 n 42 ALA 42 A THR 43 n 43 THR 43 A ASN 44 n 44 ASN 44 A ARG 45 n 45 ARG 45 A ASN 46 n 46 ASN 46 A THR 47 n 47 THR 47 A ASP 48 n 48 ASP 48 A GLY 49 n 49 GLY 49 A SER 50 n 50 SER 50 A THR 51 n 51 THR 51 A ASP 52 n 52 ASP 52 A TYR 53 n 53 TYR 53 A GLY 54 n 54 GLY 54 A ILE 55 n 55 ILE 55 A LEU 56 n 56 LEU 56 A GLN 57 n 57 GLN 57 A ILE 58 n 58 ILE 58 A ASN 59 n 59 ASN 59 A SER 60 n 60 SER 60 A ARG 61 n 61 ARG 61 A TRP 62 n 62 TRP 62 A TRP 63 n 63 TRP 63 A CYS 64 n 64 CYS 64 A ASN 65 n 65 ASN 65 A ASP 66 n 66 ASP 66 A GLY 67 n 67 GLY 67 A ARG 68 n 68 ARG 68 A THR 69 n 69 THR 69 A PRO 70 n 70 PRO 70 A GLY 71 n 71 GLY 71 A SER 72 n 72 SER 72 A ARG 73 n 73 ARG 73 A ASN 74 n 74 ASN 74 A LEU 75 n 75 LEU 75 A CYS 76 n 76 CYS 76 A ASN 77 n 77 ASN 77 A ILE 78 n 78 ILE 78 A PRO 79 n 79 PRO 79 A CYS 80 n 80 CYS 80 A SER 81 n 81 SER 81 A ALA 82 n 82 ALA 82 A LEU 83 n 83 LEU 83 A LEU 84 n 84 LEU 84 A SER 85 n 85 SER 85 A SER 86 n 86 SER 86 A ASP 87 n 87 ASP 87 A ILE 88 n 88 ILE 88 A THR 89 n 89 THR 89 A ALA 90 n 90 ALA 90 A SER 91 n 91 SER 91 A VAL 92 n 92 VAL 92 A ASN 93 n 93 ASN 93 A CYS 94 n 94 CYS 94 A ALA 95 n 95 ALA 95 A LYS 96 n 96 LYS 96 A LYS 97 n 97 LYS 97 A ILE 98 n 98 ILE 98 A VAL 99 n 99 VAL 99 A SER 100 n 100 SER 100 A ASP 101 n 101 ASP 101 A GLY 102 n 102 GLY 102 A ASN 103 n 103 ASN 103 A GLY 104 n 104 GLY 104 A MET 105 n 105 MET 105 A ASN 106 n 106 ASN 106 A ALA 107 n 107 ALA 107 A TRP 108 n 108 TRP 108 A VAL 109 n 109 VAL 109 A ALA 110 n 110 ALA 110 A TRP 111 n 111 TRP 111 A ARG 112 n 112 ARG 112 A ASN 113 n 113 ASN 113 A ARG 114 n 114 ARG 114 A CYS 115 n 115 CYS 115 A LYS 116 n 116 LYS 116 A GLY 117 n 117 GLY 117 A THR 118 n 118 THR 118 A ASP 119 n 119 ASP 119 A VAL 120 n 120 VAL 120 A GLN 121 n 121 GLN 121 A ALA 122 n 122 ALA 122 A TRP 123 n 123 TRP 123 A ILE 124 n 124 ILE 124 A ARG 125 n 125 ARG 125 A GLY 126 n 126 GLY 126 A CYS 127 n 127 CYS 127 A ARG 128 n 128 ARG 128 A LEU 129 n 129 LEU 129 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ASN 44 A N ASN 44 A O ASP 52 A O ASP 52 A N TYR 53 A N TYR 53 A O ILE 58 A O ILE 58 1 22.80 1.10 119.40 142.20 A A A NH1 CZ NH2 ARG ARG ARG 61 61 61 N 1 6.90 0.50 120.30 127.20 A A A NE CZ NH1 ARG ARG ARG 61 61 61 N 1 -29.70 0.50 120.30 90.60 A A A NE CZ NH2 ARG ARG ARG 61 61 61 N 1 14.00 1.40 123.60 137.60 A A A CD NE CZ ARG ARG ARG 73 73 73 N 1 3.43 0.50 120.30 123.73 A A A NE CZ NH1 ARG ARG ARG 73 73 73 N 1 A A NH2 O ARG HOH 61 246 2.00 1_555 2_655 1 A ASN 103 -71.90 31.81 technically defined here as 10 T and 0 T crystals, were grown by exposing them to a high magnetic field of 10 T (this entry 1WTN) and a control geomagnetic field of 40 uT(entry 1WTM), respectively (Sato,T., Yamada,Y., Saijo,S., Hori,T., Hirose,R., Tanaka,N., Sazaki,G., Nakajima,K., Igarashi,N., Tanaka,M. & Matsuura,Y. (2000). Acta Cryst. D56, 1079-1083.). A continuous homogeneous magnetic field of 10 T was produced by a liquid helium-free superconducting magnet (JMTD-10T100M9) (Japan Magnetic Technology Inc., Tokyo, Japan). Orthorhombic lysozyme crystals were grown, in the high magnetic field, via the batch crystallization method. The crystal growth conditions were 250 mg.ml-1 lysozyme, 42 mM NaCl in 50 mM sodium acetate buffer with pH 4.5 at 313 K; 11 days duration. The dimensions of the 10 T and 0 T crystals were typically 0.45 X 0.50 X 2.00 and 0.50 X 0.50 X 2.00 mm, respectively. The starting model for molecular replacement in each case was the refined atomic coordinates (entry 1BGI) of the HEW lysozyme obtained from the PDB (Oki,H., Matsuura,Y., Komatsu,H. & Chernov,A.A. (1999). Acta Cryst. D55, 114- 121.), i.e., our best resolution structure for the orthorhombic lysozyme refined so far (at 1.7 A resolution). 0.2 0.17 1.13 16 34449 1 3 MOLECULAR REPLACEMENT 0.16 1.13 16 116 1126 1 0 1009 0.005 0.018 1.13 50 1WTN 34622 34449 3 1 99.5 1.13 1.16 71.9 data reduction DENZO data scaling SCALEPACK phasing EPMR refinement REFMAC Lysozyme C (E.C.3.2.1.17) The structure of HEW Lysozyme Orthorhombic Crystal Growth under a High Magnetic Field 1 N N 2 N N 3 N N A GLY 4 A GLY 4 HELX_P A HIS 15 A HIS 15 1 1 12 A ASN 19 A ASN 19 HELX_P A TYR 23 A TYR 23 5 2 5 A SER 24 A SER 24 HELX_P A ASN 37 A ASN 37 1 3 14 A PRO 79 A PRO 79 HELX_P A SER 85 A SER 85 5 4 7 A ILE 88 A ILE 88 HELX_P A GLY 102 A GLY 102 1 5 15 A ASN 103 A ASN 103 HELX_P A ALA 107 A ALA 107 5 6 5 A TRP 108 A TRP 108 HELX_P A CYS 115 A CYS 115 1 7 8 A ASP 119 A ASP 119 HELX_P A ARG 125 A ARG 125 5 8 7 disulf 2.025 A CYS 6 A SG CYS 6 1_555 A CYS 127 A SG CYS 127 1_555 disulf 2.040 A CYS 30 A SG CYS 30 1_555 A CYS 115 A SG CYS 115 1_555 disulf 2.033 A CYS 64 A SG CYS 64 1_555 A CYS 80 A SG CYS 80 1_555 disulf 2.029 A CYS 76 A SG CYS 76 1_555 A CYS 94 A SG CYS 94 1_555 HYDROLASE Allergen, Hydrolase LYSC_CHICK UNP 1 19 P00698 KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPC SALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL 19 147 1WTN 1 129 P00698 A 1 1 129 3 anti-parallel anti-parallel A THR 43 A THR 43 A ARG 45 A ARG 45 A THR 51 A THR 51 A TYR 53 A TYR 53 A ILE 58 A ILE 58 A ASN 59 A ASN 59 BINDING SITE FOR RESIDUE CL A 130 Software 5 A ASN 65 A ASN 65 5 1_555 A ASP 66 A ASP 66 5 1_555 A CYS 80 A CYS 80 5 1_555 A SER 81 A SER 81 5 1_555 A ARG 125 A ARG 125 5 4_557 19 P 21 21 21