0.018376
0.000000
0.000000
0.000000
0.018376
0.000000
0.000000
0.000000
0.006082
0.00000
0.00000
0.00000
Safo, M.K.
Musayev, F.N.
Schirch, V.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
54.420
54.420
164.420
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C17 H21 N4 O9 P
456.344
FLAVIN MONONUCLEOTIDE
RIBOFLAVIN MONOPHOSPHATE
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
O4 P -3
94.971
PHOSPHATE ION
non-polymer
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
N
C
N
90
N
O
N
91
N
N
N
92
N
C
N
93
N
O
N
94
N
C
N
95
N
N
Y
96
N
C
Y
97
N
C
Y
98
N
C
N
99
N
C
Y
100
N
C
N
101
N
C
Y
102
N
C
Y
103
N
C
N
104
N
N
N
105
N
C
N
106
N
C
N
107
S
C
N
108
N
O
N
109
S
C
N
110
N
O
N
111
R
C
N
112
N
O
N
113
N
C
N
114
N
O
N
115
N
P
N
116
N
O
N
117
N
O
N
118
N
O
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
N
N
141
S
C
N
142
N
C
N
143
N
O
N
144
N
C
N
145
N
C
N
146
N
C
N
147
N
O
N
148
N
N
N
149
N
O
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
N
N
161
S
C
N
162
N
C
N
163
N
O
N
164
N
C
N
165
N
C
N
166
N
C
N
167
N
O
N
168
N
O
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
N
N
180
N
C
N
181
N
C
N
182
N
O
N
183
N
O
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
N
N
190
S
C
N
191
N
C
N
192
N
O
N
193
N
C
Y
194
N
C
Y
195
N
N
Y
196
N
C
Y
197
N
C
Y
198
N
N
N
199
N
O
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
O
N
211
N
H
N
212
N
H
N
213
N
N
N
214
S
C
N
215
N
C
N
216
N
O
N
217
S
C
N
218
N
C
N
219
N
C
N
220
N
C
N
221
N
O
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
N
N
236
S
C
N
237
N
C
N
238
N
O
N
239
N
C
N
240
N
C
N
241
N
C
N
242
N
C
N
243
N
O
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
N
N
258
S
C
N
259
N
C
N
260
N
O
N
261
N
C
N
262
N
C
N
263
N
C
N
264
N
C
N
265
N
N
N
266
N
O
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
N
N
283
S
C
N
284
N
C
N
285
N
O
N
286
N
C
N
287
N
C
N
288
N
S
N
289
N
C
N
290
N
O
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
N
N
303
S
C
N
304
N
C
N
305
N
O
N
306
N
C
Y
307
N
C
Y
308
N
C
Y
309
N
C
Y
310
N
C
Y
311
N
C
Y
312
N
C
N
313
N
O
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
P
N
326
N
O
N
327
N
O
N
328
N
O
N
329
N
O
N
330
N
N
N
331
S
C
N
332
N
C
N
333
N
O
N
334
N
C
N
335
N
C
N
336
N
C
N
337
N
O
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
N
N
348
S
C
N
349
N
C
N
350
N
O
N
351
N
C
N
352
N
O
N
353
N
O
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
N
N
362
S
C
N
363
N
C
N
364
N
O
N
365
R
C
N
366
N
O
N
367
N
C
N
368
N
O
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
N
N
379
S
C
N
380
N
C
N
381
N
O
N
382
N
C
Y
383
N
C
Y
384
N
C
Y
385
N
C
Y
386
N
N
Y
387
N
C
Y
388
N
C
Y
389
N
C
Y
390
N
C
Y
391
N
C
N
392
N
O
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
N
N
406
S
C
N
407
N
C
N
408
N
O
N
409
N
C
Y
410
N
C
Y
411
N
C
Y
412
N
C
Y
413
N
C
Y
414
N
C
Y
415
N
C
N
416
N
O
N
417
N
O
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
N
N
430
S
C
N
431
N
C
N
432
N
O
N
433
N
C
N
434
N
C
N
435
N
C
N
436
N
O
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
doub
N
92
N
sing
N
93
N
sing
Y
94
N
doub
Y
95
N
sing
Y
96
N
sing
N
97
N
sing
N
98
N
sing
Y
99
N
doub
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
Y
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
Y
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
doub
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
doub
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
doub
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
doub
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
doub
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
doub
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
doub
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
Y
194
N
sing
Y
195
N
doub
Y
196
N
doub
N
197
N
sing
Y
198
N
sing
N
199
N
sing
Y
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
doub
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
doub
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
doub
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
doub
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
doub
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
Y
302
N
doub
Y
303
N
sing
Y
304
N
sing
N
305
N
sing
Y
306
N
doub
N
307
N
sing
Y
308
N
doub
N
309
N
sing
Y
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
doub
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
doub
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
doub
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
doub
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
doub
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
Y
375
N
doub
Y
376
N
sing
Y
377
N
sing
N
378
N
sing
Y
379
N
doub
Y
380
N
sing
Y
381
N
sing
N
382
N
sing
Y
383
N
sing
Y
384
N
doub
N
385
N
sing
Y
386
N
doub
N
387
N
sing
Y
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
doub
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
Y
403
N
doub
Y
404
N
sing
Y
405
N
sing
N
406
N
sing
Y
407
N
doub
N
408
N
sing
Y
409
N
doub
N
410
N
sing
Y
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
doub
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
61
599
604
10.1107/S0907444905005512
15858270
Structure of Escherichia coli pyridoxine 5'-phosphate oxidase in a tetragonal crystal form: insights into the mechanistic pathway of the enzyme.
2005
10.2210/pdb1wv4/pdb
pdb_00001wv4
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
mirrors
IMAGE PLATE
2000-09-27
RIGAKU RAXIS II
MSC Mirrors
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RU200
25585.188
Pyridoxamine 5'-phosphate oxidase
1.4.3.5
2
man
polymer
94.971
PHOSPHATE ION
2
syn
non-polymer
456.344
FLAVIN MONONUCLEOTIDE
2
syn
non-polymer
18.015
water
72
nat
water
PNP/PMP oxidase, PNPOx
no
no
MSDNDELQQIAHLRREYTKGGLRRRDLPADPLTLFERWLSQACEAKLADPTAMVVATVDEHGQPYQRIVLLKHYDEKGMV
FYTNLGSRKAHQIENNPRVSLLFPWHTLERQVMVIGKAERLSTLEVMKYFHSRPRDSQIGAWVSKQSSRISARGILESKF
LELKQKFQQGEVPLPSFWGGFRVSLEQIEFWQGGEHRLHDRFLYQRENDAWKIDRLAP
MSDNDELQQIAHLRREYTKGGLRRRDLPADPLTLFERWLSQACEAKLADPTAMVVATVDEHGQPYQRIVLLKHYDEKGMV
FYTNLGSRKAHQIENNPRVSLLFPWHTLERQVMVIGKAERLSTLEVMKYFHSRPRDSQIGAWVSKQSSRISARGILESKF
LELKQKFQQGEVPLPSFWGGFRVSLEQIEFWQGGEHRLHDRFLYQRENDAWKIDRLAP
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Escherichia
Escherichia
sample
562
Escherichia coli
562
Escherichia coli
plasmid
pET22b
1
2.3
46
VAPOR DIFFUSION, HANGING DROP
7.5
Na Hepes, ammonium phosphate, potassium phosphate, mercaptoethanol, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_site
repository
Initial release
Version format compliance
Version format compliance
Refinement description
Data collection
Database references
Derived calculations
Refinement description
1
0
2004-12-28
1
1
2008-04-30
1
2
2011-07-13
1
3
2017-10-11
1
4
2023-10-25
_software.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Structure of binary complex of e. coli PNPOx in trigonal crystal form
Structure of ternary complex of e. coli PNPOx in monoclinic crystal form
Structure of ternary complex of e. coli PNPOx in trigonal crystal form
PDBJ
Y
PDBJ
2004-12-11
REL
REL
PO4
PHOSPHATE ION
FMN
FLAVIN MONONUCLEOTIDE
HOH
water
1DNL
PDB
experimental model
PO4
275
2
PO4
PO4
275
A
FMN
250
3
FMN
FMN
250
A
PO4
275
2
PO4
PO4
1275
B
FMN
250
3
FMN
FMN
1250
B
HOH
1
4
HOH
HOH
276
A
HOH
2
4
HOH
HOH
277
A
HOH
3
4
HOH
HOH
278
A
HOH
4
4
HOH
HOH
279
A
HOH
5
4
HOH
HOH
280
A
HOH
6
4
HOH
HOH
281
A
HOH
7
4
HOH
HOH
282
A
HOH
8
4
HOH
HOH
283
A
HOH
9
4
HOH
HOH
284
A
HOH
10
4
HOH
HOH
285
A
HOH
23
4
HOH
HOH
286
A
HOH
28
4
HOH
HOH
287
A
HOH
29
4
HOH
HOH
288
A
HOH
30
4
HOH
HOH
289
A
HOH
32
4
HOH
HOH
290
A
HOH
37
4
HOH
HOH
291
A
HOH
39
4
HOH
HOH
292
A
HOH
40
4
HOH
HOH
293
A
HOH
41
4
HOH
HOH
294
A
HOH
42
4
HOH
HOH
295
A
HOH
43
4
HOH
HOH
296
A
HOH
44
4
HOH
HOH
297
A
HOH
45
4
HOH
HOH
298
A
HOH
46
4
HOH
HOH
299
A
HOH
47
4
HOH
HOH
300
A
HOH
48
4
HOH
HOH
301
A
HOH
49
4
HOH
HOH
302
A
HOH
50
4
HOH
HOH
303
A
HOH
51
4
HOH
HOH
304
A
HOH
52
4
HOH
HOH
305
A
HOH
53
4
HOH
HOH
306
A
HOH
54
4
HOH
HOH
307
A
HOH
55
4
HOH
HOH
308
A
HOH
56
4
HOH
HOH
309
A
HOH
57
4
HOH
HOH
310
A
HOH
58
4
HOH
HOH
311
A
HOH
59
4
HOH
HOH
312
A
HOH
63
4
HOH
HOH
313
A
HOH
64
4
HOH
HOH
314
A
HOH
65
4
HOH
HOH
315
A
HOH
66
4
HOH
HOH
316
A
HOH
67
4
HOH
HOH
317
A
HOH
71
4
HOH
HOH
318
A
HOH
73
4
HOH
HOH
319
A
HOH
11
4
HOH
HOH
1276
B
HOH
12
4
HOH
HOH
1277
B
HOH
13
4
HOH
HOH
1278
B
HOH
14
4
HOH
HOH
1279
B
HOH
15
4
HOH
HOH
1280
B
HOH
16
4
HOH
HOH
1281
B
HOH
17
4
HOH
HOH
1282
B
HOH
18
4
HOH
HOH
1283
B
HOH
19
4
HOH
HOH
1284
B
HOH
20
4
HOH
HOH
1285
B
HOH
21
4
HOH
HOH
1286
B
HOH
22
4
HOH
HOH
1287
B
HOH
24
4
HOH
HOH
1288
B
HOH
25
4
HOH
HOH
1289
B
HOH
26
4
HOH
HOH
1290
B
HOH
27
4
HOH
HOH
1291
B
HOH
33
4
HOH
HOH
1292
B
HOH
34
4
HOH
HOH
1293
B
HOH
35
4
HOH
HOH
1294
B
HOH
36
4
HOH
HOH
1295
B
HOH
38
4
HOH
HOH
1296
B
HOH
60
4
HOH
HOH
1297
B
HOH
61
4
HOH
HOH
1298
B
HOH
62
4
HOH
HOH
1299
B
HOH
68
4
HOH
HOH
1300
B
HOH
69
4
HOH
HOH
1301
B
HOH
70
4
HOH
HOH
1302
B
HOH
72
4
HOH
HOH
1303
B
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
n
6
6
A
n
7
7
A
n
8
8
A
n
9
9
A
n
10
10
A
ALA
11
n
11
ALA
11
A
HIS
12
n
12
HIS
12
A
LEU
13
n
13
LEU
13
A
ARG
14
n
14
ARG
14
A
ARG
15
n
15
ARG
15
A
GLU
16
n
16
GLU
16
A
TYR
17
n
17
TYR
17
A
THR
18
n
18
THR
18
A
LYS
19
n
19
LYS
19
A
GLY
20
n
20
GLY
20
A
GLY
21
n
21
GLY
21
A
LEU
22
n
22
LEU
22
A
ARG
23
n
23
ARG
23
A
ARG
24
n
24
ARG
24
A
ARG
25
n
25
ARG
25
A
ASP
26
n
26
ASP
26
A
LEU
27
n
27
LEU
27
A
PRO
28
n
28
PRO
28
A
ALA
29
n
29
ALA
29
A
ASP
30
n
30
ASP
30
A
PRO
31
n
31
PRO
31
A
LEU
32
n
32
LEU
32
A
THR
33
n
33
THR
33
A
LEU
34
n
34
LEU
34
A
PHE
35
n
35
PHE
35
A
GLU
36
n
36
GLU
36
A
ARG
37
n
37
ARG
37
A
TRP
38
n
38
TRP
38
A
LEU
39
n
39
LEU
39
A
SER
40
n
40
SER
40
A
GLN
41
n
41
GLN
41
A
ALA
42
n
42
ALA
42
A
CYS
43
n
43
CYS
43
A
GLU
44
n
44
GLU
44
A
ALA
45
n
45
ALA
45
A
LYS
46
n
46
LYS
46
A
LEU
47
n
47
LEU
47
A
ALA
48
n
48
ALA
48
A
ASP
49
n
49
ASP
49
A
PRO
50
n
50
PRO
50
A
THR
51
n
51
THR
51
A
ALA
52
n
52
ALA
52
A
MET
53
n
53
MET
53
A
VAL
54
n
54
VAL
54
A
VAL
55
n
55
VAL
55
A
ALA
56
n
56
ALA
56
A
THR
57
n
57
THR
57
A
VAL
58
n
58
VAL
58
A
ASP
59
n
59
ASP
59
A
GLU
60
n
60
GLU
60
A
HIS
61
n
61
HIS
61
A
GLY
62
n
62
GLY
62
A
GLN
63
n
63
GLN
63
A
PRO
64
n
64
PRO
64
A
TYR
65
n
65
TYR
65
A
GLN
66
n
66
GLN
66
A
ARG
67
n
67
ARG
67
A
ILE
68
n
68
ILE
68
A
VAL
69
n
69
VAL
69
A
LEU
70
n
70
LEU
70
A
LEU
71
n
71
LEU
71
A
LYS
72
n
72
LYS
72
A
HIS
73
n
73
HIS
73
A
TYR
74
n
74
TYR
74
A
ASP
75
n
75
ASP
75
A
GLU
76
n
76
GLU
76
A
LYS
77
n
77
LYS
77
A
GLY
78
n
78
GLY
78
A
MET
79
n
79
MET
79
A
VAL
80
n
80
VAL
80
A
PHE
81
n
81
PHE
81
A
TYR
82
n
82
TYR
82
A
THR
83
n
83
THR
83
A
ASN
84
n
84
ASN
84
A
LEU
85
n
85
LEU
85
A
GLY
86
n
86
GLY
86
A
SER
87
n
87
SER
87
A
ARG
88
n
88
ARG
88
A
LYS
89
n
89
LYS
89
A
ALA
90
n
90
ALA
90
A
HIS
91
n
91
HIS
91
A
GLN
92
n
92
GLN
92
A
ILE
93
n
93
ILE
93
A
GLU
94
n
94
GLU
94
A
ASN
95
n
95
ASN
95
A
ASN
96
n
96
ASN
96
A
PRO
97
n
97
PRO
97
A
ARG
98
n
98
ARG
98
A
VAL
99
n
99
VAL
99
A
SER
100
n
100
SER
100
A
LEU
101
n
101
LEU
101
A
LEU
102
n
102
LEU
102
A
PHE
103
n
103
PHE
103
A
PRO
104
n
104
PRO
104
A
TRP
105
n
105
TRP
105
A
HIS
106
n
106
HIS
106
A
THR
107
n
107
THR
107
A
LEU
108
n
108
LEU
108
A
GLU
109
n
109
GLU
109
A
ARG
110
n
110
ARG
110
A
GLN
111
n
111
GLN
111
A
VAL
112
n
112
VAL
112
A
MET
113
n
113
MET
113
A
VAL
114
n
114
VAL
114
A
ILE
115
n
115
ILE
115
A
GLY
116
n
116
GLY
116
A
LYS
117
n
117
LYS
117
A
ALA
118
n
118
ALA
118
A
GLU
119
n
119
GLU
119
A
ARG
120
n
120
ARG
120
A
LEU
121
n
121
LEU
121
A
SER
122
n
122
SER
122
A
THR
123
n
123
THR
123
A
LEU
124
n
124
LEU
124
A
GLU
125
n
125
GLU
125
A
VAL
126
n
126
VAL
126
A
MET
127
n
127
MET
127
A
LYS
128
n
128
LYS
128
A
TYR
129
n
129
TYR
129
A
n
130
130
A
n
131
131
A
n
132
132
A
n
133
133
A
n
134
134
A
n
135
135
A
n
136
136
A
n
137
137
A
n
138
138
A
n
139
139
A
n
140
140
A
n
141
141
A
n
142
142
A
n
143
143
A
n
144
144
A
n
145
145
A
n
146
146
A
n
147
147
A
n
148
148
A
n
149
149
A
n
150
150
A
n
151
151
A
n
152
152
A
n
153
153
A
n
154
154
A
n
155
155
A
n
156
156
A
n
157
157
A
n
158
158
A
n
159
159
A
n
160
160
A
n
161
161
A
n
162
162
A
n
163
163
A
n
164
164
A
n
165
165
A
n
166
166
A
n
167
167
A
n
168
168
A
n
169
169
A
n
170
170
A
n
171
171
A
n
172
172
A
n
173
173
A
n
174
174
A
n
175
175
A
SER
176
n
176
SER
176
A
PHE
177
n
177
PHE
177
A
TRP
178
n
178
TRP
178
A
GLY
179
n
179
GLY
179
A
GLY
180
n
180
GLY
180
A
PHE
181
n
181
PHE
181
A
ARG
182
n
182
ARG
182
A
VAL
183
n
183
VAL
183
A
SER
184
n
184
SER
184
A
LEU
185
n
185
LEU
185
A
GLU
186
n
186
GLU
186
A
GLN
187
n
187
GLN
187
A
ILE
188
n
188
ILE
188
A
GLU
189
n
189
GLU
189
A
PHE
190
n
190
PHE
190
A
TRP
191
n
191
TRP
191
A
GLN
192
n
192
GLN
192
A
GLY
193
n
193
GLY
193
A
GLY
194
n
194
GLY
194
A
GLU
195
n
195
GLU
195
A
HIS
196
n
196
HIS
196
A
ARG
197
n
197
ARG
197
A
LEU
198
n
198
LEU
198
A
HIS
199
n
199
HIS
199
A
ASP
200
n
200
ASP
200
A
ARG
201
n
201
ARG
201
A
PHE
202
n
202
PHE
202
A
LEU
203
n
203
LEU
203
A
TYR
204
n
204
TYR
204
A
GLN
205
n
205
GLN
205
A
ARG
206
n
206
ARG
206
A
GLU
207
n
207
GLU
207
A
ASN
208
n
208
ASN
208
A
ASP
209
n
209
ASP
209
A
ALA
210
n
210
ALA
210
A
TRP
211
n
211
TRP
211
A
LYS
212
n
212
LYS
212
A
ILE
213
n
213
ILE
213
A
ASP
214
n
214
ASP
214
A
ARG
215
n
215
ARG
215
A
LEU
216
n
216
LEU
216
A
ALA
217
n
217
ALA
217
A
PRO
218
n
218
PRO
218
A
n
1
1
B
n
2
2
B
n
3
3
B
n
4
4
B
n
5
5
B
n
6
6
B
n
7
7
B
n
8
8
B
n
9
9
B
n
10
10
B
n
11
11
B
n
12
12
B
n
13
13
B
n
14
14
B
n
15
15
B
n
16
16
B
TYR
17
n
17
TYR
17
B
THR
18
n
18
THR
18
B
LYS
19
n
19
LYS
19
B
GLY
20
n
20
GLY
20
B
GLY
21
n
21
GLY
21
B
LEU
22
n
22
LEU
22
B
ARG
23
n
23
ARG
23
B
ARG
24
n
24
ARG
24
B
ARG
25
n
25
ARG
25
B
ASP
26
n
26
ASP
26
B
LEU
27
n
27
LEU
27
B
PRO
28
n
28
PRO
28
B
ALA
29
n
29
ALA
29
B
ASP
30
n
30
ASP
30
B
PRO
31
n
31
PRO
31
B
LEU
32
n
32
LEU
32
B
THR
33
n
33
THR
33
B
LEU
34
n
34
LEU
34
B
PHE
35
n
35
PHE
35
B
GLU
36
n
36
GLU
36
B
ARG
37
n
37
ARG
37
B
TRP
38
n
38
TRP
38
B
LEU
39
n
39
LEU
39
B
SER
40
n
40
SER
40
B
GLN
41
n
41
GLN
41
B
ALA
42
n
42
ALA
42
B
CYS
43
n
43
CYS
43
B
GLU
44
n
44
GLU
44
B
ALA
45
n
45
ALA
45
B
LYS
46
n
46
LYS
46
B
LEU
47
n
47
LEU
47
B
ALA
48
n
48
ALA
48
B
ASP
49
n
49
ASP
49
B
PRO
50
n
50
PRO
50
B
THR
51
n
51
THR
51
B
ALA
52
n
52
ALA
52
B
MET
53
n
53
MET
53
B
VAL
54
n
54
VAL
54
B
VAL
55
n
55
VAL
55
B
ALA
56
n
56
ALA
56
B
THR
57
n
57
THR
57
B
VAL
58
n
58
VAL
58
B
ASP
59
n
59
ASP
59
B
GLU
60
n
60
GLU
60
B
HIS
61
n
61
HIS
61
B
GLY
62
n
62
GLY
62
B
GLN
63
n
63
GLN
63
B
PRO
64
n
64
PRO
64
B
TYR
65
n
65
TYR
65
B
GLN
66
n
66
GLN
66
B
ARG
67
n
67
ARG
67
B
ILE
68
n
68
ILE
68
B
VAL
69
n
69
VAL
69
B
LEU
70
n
70
LEU
70
B
LEU
71
n
71
LEU
71
B
LYS
72
n
72
LYS
72
B
HIS
73
n
73
HIS
73
B
TYR
74
n
74
TYR
74
B
ASP
75
n
75
ASP
75
B
GLU
76
n
76
GLU
76
B
LYS
77
n
77
LYS
77
B
GLY
78
n
78
GLY
78
B
MET
79
n
79
MET
79
B
VAL
80
n
80
VAL
80
B
PHE
81
n
81
PHE
81
B
TYR
82
n
82
TYR
82
B
THR
83
n
83
THR
83
B
ASN
84
n
84
ASN
84
B
LEU
85
n
85
LEU
85
B
GLY
86
n
86
GLY
86
B
SER
87
n
87
SER
87
B
ARG
88
n
88
ARG
88
B
LYS
89
n
89
LYS
89
B
ALA
90
n
90
ALA
90
B
HIS
91
n
91
HIS
91
B
GLN
92
n
92
GLN
92
B
ILE
93
n
93
ILE
93
B
GLU
94
n
94
GLU
94
B
ASN
95
n
95
ASN
95
B
ASN
96
n
96
ASN
96
B
PRO
97
n
97
PRO
97
B
ARG
98
n
98
ARG
98
B
VAL
99
n
99
VAL
99
B
SER
100
n
100
SER
100
B
LEU
101
n
101
LEU
101
B
LEU
102
n
102
LEU
102
B
PHE
103
n
103
PHE
103
B
PRO
104
n
104
PRO
104
B
TRP
105
n
105
TRP
105
B
HIS
106
n
106
HIS
106
B
THR
107
n
107
THR
107
B
LEU
108
n
108
LEU
108
B
GLU
109
n
109
GLU
109
B
ARG
110
n
110
ARG
110
B
GLN
111
n
111
GLN
111
B
VAL
112
n
112
VAL
112
B
MET
113
n
113
MET
113
B
VAL
114
n
114
VAL
114
B
ILE
115
n
115
ILE
115
B
GLY
116
n
116
GLY
116
B
LYS
117
n
117
LYS
117
B
ALA
118
n
118
ALA
118
B
GLU
119
n
119
GLU
119
B
ARG
120
n
120
ARG
120
B
LEU
121
n
121
LEU
121
B
SER
122
n
122
SER
122
B
THR
123
n
123
THR
123
B
LEU
124
n
124
LEU
124
B
GLU
125
n
125
GLU
125
B
VAL
126
n
126
VAL
126
B
MET
127
n
127
MET
127
B
n
128
128
B
n
129
129
B
n
130
130
B
n
131
131
B
n
132
132
B
n
133
133
B
n
134
134
B
n
135
135
B
n
136
136
B
n
137
137
B
n
138
138
B
n
139
139
B
n
140
140
B
n
141
141
B
n
142
142
B
n
143
143
B
n
144
144
B
n
145
145
B
n
146
146
B
n
147
147
B
n
148
148
B
n
149
149
B
n
150
150
B
n
151
151
B
n
152
152
B
n
153
153
B
n
154
154
B
n
155
155
B
n
156
156
B
n
157
157
B
n
158
158
B
n
159
159
B
n
160
160
B
n
161
161
B
n
162
162
B
n
163
163
B
n
164
164
B
n
165
165
B
n
166
166
B
n
167
167
B
n
168
168
B
n
169
169
B
n
170
170
B
n
171
171
B
n
172
172
B
n
173
173
B
n
174
174
B
n
175
175
B
SER
176
n
176
SER
176
B
PHE
177
n
177
PHE
177
B
TRP
178
n
178
TRP
178
B
GLY
179
n
179
GLY
179
B
GLY
180
n
180
GLY
180
B
PHE
181
n
181
PHE
181
B
ARG
182
n
182
ARG
182
B
VAL
183
n
183
VAL
183
B
SER
184
n
184
SER
184
B
LEU
185
n
185
LEU
185
B
GLU
186
n
186
GLU
186
B
GLN
187
n
187
GLN
187
B
ILE
188
n
188
ILE
188
B
GLU
189
n
189
GLU
189
B
PHE
190
n
190
PHE
190
B
TRP
191
n
191
TRP
191
B
GLN
192
n
192
GLN
192
B
GLY
193
n
193
GLY
193
B
GLY
194
n
194
GLY
194
B
GLU
195
n
195
GLU
195
B
HIS
196
n
196
HIS
196
B
ARG
197
n
197
ARG
197
B
LEU
198
n
198
LEU
198
B
HIS
199
n
199
HIS
199
B
ASP
200
n
200
ASP
200
B
ARG
201
n
201
ARG
201
B
PHE
202
n
202
PHE
202
B
LEU
203
n
203
LEU
203
B
TYR
204
n
204
TYR
204
B
GLN
205
n
205
GLN
205
B
ARG
206
n
206
ARG
206
B
GLU
207
n
207
GLU
207
B
ASN
208
n
208
ASN
208
B
ASP
209
n
209
ASP
209
B
ALA
210
n
210
ALA
210
B
TRP
211
n
211
TRP
211
B
LYS
212
n
212
LYS
212
B
ILE
213
n
213
ILE
213
B
ASP
214
n
214
ASP
214
B
ARG
215
n
215
ARG
215
B
LEU
216
n
216
LEU
216
B
ALA
217
n
217
ALA
217
B
PRO
218
n
218
PRO
218
B
author_and_software_defined_assembly
PISA
2
dimeric
4940
-32
15800
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
VAL
69
A
O
VAL
69
A
N
MET
53
A
N
MET
53
A
N
VAL
54
A
N
VAL
54
A
O
LEU
102
A
O
LEU
102
A
O
TRP
105
A
O
TRP
105
A
N
ARG
110
A
N
ARG
110
A
N
GLU
119
A
N
GLU
119
A
O
ARG
182
A
O
ARG
182
A
O
VAL
183
A
O
VAL
183
A
N
MET
79
A
N
MET
79
A
O
VAL
80
A
O
VAL
80
A
N
HIS
73
A
N
HIS
73
A
O
VAL
69
A
O
VAL
69
A
N
MET
53
A
N
MET
53
A
N
VAL
54
A
N
VAL
54
A
O
LEU
102
A
O
LEU
102
A
O
TRP
105
A
O
TRP
105
A
N
ARG
110
A
N
ARG
110
A
N
MET
113
A
N
MET
113
A
O
GLU
189
A
O
GLU
189
A
N
PHE
190
A
N
PHE
190
A
O
PHE
202
A
O
PHE
202
A
N
GLN
205
A
N
GLN
205
A
O
LYS
212
A
O
LYS
212
B
O
ARG
67
B
O
ARG
67
B
N
VAL
55
B
N
VAL
55
B
N
ALA
56
B
N
ALA
56
B
O
SER
100
B
O
SER
100
B
N
LEU
101
B
N
LEU
101
B
O
VAL
114
B
O
VAL
114
B
N
GLU
119
B
N
GLU
119
B
O
ARG
182
B
O
ARG
182
B
O
VAL
183
B
O
VAL
183
B
N
MET
79
B
N
MET
79
B
O
GLY
78
B
O
GLY
78
B
N
ASP
75
B
N
ASP
75
B
O
ARG
67
B
O
ARG
67
B
N
VAL
55
B
N
VAL
55
B
N
ALA
56
B
N
ALA
56
B
O
SER
100
B
O
SER
100
B
N
LEU
101
B
N
LEU
101
B
O
VAL
114
B
O
VAL
114
B
N
MET
113
B
N
MET
113
B
O
GLU
189
B
O
GLU
189
B
N
ILE
188
B
N
ILE
188
B
O
TYR
204
B
O
TYR
204
B
N
GLU
207
B
N
GLU
207
B
O
ALA
210
B
O
ALA
210
1
A
MET
1
A
MET
1
1
Y
1
A
SER
2
A
SER
2
1
Y
1
A
ASP
3
A
ASP
3
1
Y
1
A
ASN
4
A
ASN
4
1
Y
1
A
ASP
5
A
ASP
5
1
Y
1
A
GLU
6
A
GLU
6
1
Y
1
A
LEU
7
A
LEU
7
1
Y
1
A
GLN
8
A
GLN
8
1
Y
1
A
GLN
9
A
GLN
9
1
Y
1
A
ILE
10
A
ILE
10
1
Y
1
A
PHE
130
A
PHE
130
1
Y
1
A
HIS
131
A
HIS
131
1
Y
1
A
SER
132
A
SER
132
1
Y
1
A
ARG
133
A
ARG
133
1
Y
1
A
PRO
134
A
PRO
134
1
Y
1
A
ARG
135
A
ARG
135
1
Y
1
A
ASP
136
A
ASP
136
1
Y
1
A
SER
137
A
SER
137
1
Y
1
A
GLN
138
A
GLN
138
1
Y
1
A
ILE
139
A
ILE
139
1
Y
1
A
GLY
140
A
GLY
140
1
Y
1
A
ALA
141
A
ALA
141
1
Y
1
A
TRP
142
A
TRP
142
1
Y
1
A
VAL
143
A
VAL
143
1
Y
1
A
SER
144
A
SER
144
1
Y
1
A
LYS
145
A
LYS
145
1
Y
1
A
GLN
146
A
GLN
146
1
Y
1
A
SER
147
A
SER
147
1
Y
1
A
SER
148
A
SER
148
1
Y
1
A
ARG
149
A
ARG
149
1
Y
1
A
ILE
150
A
ILE
150
1
Y
1
A
SER
151
A
SER
151
1
Y
1
A
ALA
152
A
ALA
152
1
Y
1
A
ARG
153
A
ARG
153
1
Y
1
A
GLY
154
A
GLY
154
1
Y
1
A
ILE
155
A
ILE
155
1
Y
1
A
LEU
156
A
LEU
156
1
Y
1
A
GLU
157
A
GLU
157
1
Y
1
A
SER
158
A
SER
158
1
Y
1
A
LYS
159
A
LYS
159
1
Y
1
A
PHE
160
A
PHE
160
1
Y
1
A
LEU
161
A
LEU
161
1
Y
1
A
GLU
162
A
GLU
162
1
Y
1
A
LEU
163
A
LEU
163
1
Y
1
A
LYS
164
A
LYS
164
1
Y
1
A
GLN
165
A
GLN
165
1
Y
1
A
LYS
166
A
LYS
166
1
Y
1
A
PHE
167
A
PHE
167
1
Y
1
A
GLN
168
A
GLN
168
1
Y
1
A
GLN
169
A
GLN
169
1
Y
1
A
GLY
170
A
GLY
170
1
Y
1
A
GLU
171
A
GLU
171
1
Y
1
A
VAL
172
A
VAL
172
1
Y
1
A
PRO
173
A
PRO
173
1
Y
1
A
LEU
174
A
LEU
174
1
Y
1
A
PRO
175
A
PRO
175
1
Y
1
B
MET
1
B
MET
1
1
Y
1
B
SER
2
B
SER
2
1
Y
1
B
ASP
3
B
ASP
3
1
Y
1
B
ASN
4
B
ASN
4
1
Y
1
B
ASP
5
B
ASP
5
1
Y
1
B
GLU
6
B
GLU
6
1
Y
1
B
LEU
7
B
LEU
7
1
Y
1
B
GLN
8
B
GLN
8
1
Y
1
B
GLN
9
B
GLN
9
1
Y
1
B
ILE
10
B
ILE
10
1
Y
1
B
ALA
11
B
ALA
11
1
Y
1
B
HIS
12
B
HIS
12
1
Y
1
B
LEU
13
B
LEU
13
1
Y
1
B
ARG
14
B
ARG
14
1
Y
1
B
ARG
15
B
ARG
15
1
Y
1
B
GLU
16
B
GLU
16
1
Y
1
B
LYS
128
B
LYS
128
1
Y
1
B
TYR
129
B
TYR
129
1
Y
1
B
PHE
130
B
PHE
130
1
Y
1
B
HIS
131
B
HIS
131
1
Y
1
B
SER
132
B
SER
132
1
Y
1
B
ARG
133
B
ARG
133
1
Y
1
B
PRO
134
B
PRO
134
1
Y
1
B
ARG
135
B
ARG
135
1
Y
1
B
ASP
136
B
ASP
136
1
Y
1
B
SER
137
B
SER
137
1
Y
1
B
GLN
138
B
GLN
138
1
Y
1
B
ILE
139
B
ILE
139
1
Y
1
B
GLY
140
B
GLY
140
1
Y
1
B
ALA
141
B
ALA
141
1
Y
1
B
TRP
142
B
TRP
142
1
Y
1
B
VAL
143
B
VAL
143
1
Y
1
B
SER
144
B
SER
144
1
Y
1
B
LYS
145
B
LYS
145
1
Y
1
B
GLN
146
B
GLN
146
1
Y
1
B
SER
147
B
SER
147
1
Y
1
B
SER
148
B
SER
148
1
Y
1
B
ARG
149
B
ARG
149
1
Y
1
B
ILE
150
B
ILE
150
1
Y
1
B
SER
151
B
SER
151
1
Y
1
B
ALA
152
B
ALA
152
1
Y
1
B
ARG
153
B
ARG
153
1
Y
1
B
GLY
154
B
GLY
154
1
Y
1
B
ILE
155
B
ILE
155
1
Y
1
B
LEU
156
B
LEU
156
1
Y
1
B
GLU
157
B
GLU
157
1
Y
1
B
SER
158
B
SER
158
1
Y
1
B
LYS
159
B
LYS
159
1
Y
1
B
PHE
160
B
PHE
160
1
Y
1
B
LEU
161
B
LEU
161
1
Y
1
B
GLU
162
B
GLU
162
1
Y
1
B
LEU
163
B
LEU
163
1
Y
1
B
LYS
164
B
LYS
164
1
Y
1
B
GLN
165
B
GLN
165
1
Y
1
B
LYS
166
B
LYS
166
1
Y
1
B
PHE
167
B
PHE
167
1
Y
1
B
GLN
168
B
GLN
168
1
Y
1
B
GLN
169
B
GLN
169
1
Y
1
B
GLY
170
B
GLY
170
1
Y
1
B
GLU
171
B
GLU
171
1
Y
1
B
VAL
172
B
VAL
172
1
Y
1
B
PRO
173
B
PRO
173
1
Y
1
B
LEU
174
B
LEU
174
1
Y
1
B
PRO
175
B
PRO
175
1
Y
1
22.48
2.70
111.00
133.48
B
B
B
N
CA
C
THR
THR
THR
18
18
18
N
1
A
ARG
15
53.47
-164.45
1
A
ALA
45
-74.41
26.84
1
A
LYS
46
36.46
53.98
1
A
ASP
49
38.55
62.02
1
A
HIS
73
179.98
146.50
1
A
TRP
105
-90.74
35.89
1
A
VAL
126
-38.98
-24.75
1
A
LYS
128
179.06
-61.87
1
A
GLU
195
-45.27
-101.19
1
A
HIS
196
-58.94
62.88
1
A
ARG
197
56.66
-4.47
1
A
ASN
208
34.29
70.30
1
A
ASP
209
37.61
62.42
1
B
THR
18
19.71
164.46
1
B
LEU
47
21.35
105.99
1
B
ARG
67
-170.51
149.00
1
B
TRP
105
-87.68
37.54
1
B
PHE
177
67.82
-5.55
1
B
HIS
196
108.36
-111.53
1
B
ARG
197
-175.72
70.81
1
B
LEU
198
-116.23
68.24
54.0
-2.56
0.00
0.00
-2.56
0.00
5.11
0.29
0.011
0.242
0.258
0.242
2.60
45.38
709
14262
14120
5.0
96.2
RANDOM
107804.79
0.000000
1
RESTRAINED
THROUGHOUT
1.0
MOLECULAR REPLACEMENT
1DNL
Engh & Huber
FLAT MODEL
39.0777
0.342631
0.46
0.35
5.00
0.40
0.26
2.60
45.38
72
2773
72
0
2629
0.022
2.1
25.0
1.26
0.369
0.035
0.292
2.76
109
2198
2285
6
4.7
94.5
51.6
2.6
45.38
1WV4
14262
14262
0
0
0.063
1
12.4
4.2
90.8
0.249
2.6
2.8
2.7
2819
4.0
91.3
refinement
CNS
1.0
data reduction
bioteX
data scaling
bioteX
phasing
AMoRE
X-ray Structure of Escherichia coli pyridoxine 5'-phosphate oxidase in tetragonal crystal form
1
N
N
1
N
N
2
N
N
3
N
N
2
N
N
3
N
N
4
N
N
4
N
N
A
ASP
30
A
ASP
30
HELX_P
A
ALA
45
A
ALA
45
1
1
16
A
SER
87
A
SER
87
HELX_P
A
ASN
96
A
ASN
96
1
2
10
A
HIS
106
A
HIS
106
HELX_P
A
GLU
109
A
GLU
109
5
3
4
A
SER
122
A
SER
122
HELX_P
A
MET
127
A
MET
127
1
4
6
B
ARG
23
B
ARG
23
HELX_P
B
LEU
27
B
LEU
27
5
5
5
B
ASP
30
B
ASP
30
HELX_P
B
ALA
45
B
ALA
45
1
6
16
B
SER
87
B
SER
87
HELX_P
B
ASN
96
B
ASN
96
1
7
10
B
TRP
105
B
TRP
105
HELX_P
B
LEU
108
B
LEU
108
5
8
4
OXIDOREDUCTASE
PLP, FMN, pyridoxal, pyridoxine 5'-phosphate, oxidase, OXIDOREDUCTASE
PDXH_ECOLI
UNP
1
0
P28225
MSDNDELQQIAHLRREYTKGGLRRRDLPADPLTLFERWLSQACEAKLADPTAMVVATVDEHGQPYQRIVLLKHYDEKGMV
FYTNLGSRKAHQIENNPRVSLLFPWHTLERQVMVIGKAERLSTLEVMKYFHSRPRDSQIGAWVSKQSSRISARGILESKF
LELKQKFQQGEVPLPSFWGGFRVSLEQIEFWQGGEHRLHDRFLYQRENDAWKIDRLAP
0
217
1WV4
1
218
P28225
A
1
1
218
0
217
1WV4
1
218
P28225
B
1
1
218
7
7
7
7
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
PRO
64
A
PRO
64
A
LEU
70
A
LEU
70
A
ALA
52
A
ALA
52
A
VAL
58
A
VAL
58
A
ARG
98
A
ARG
98
A
TRP
105
A
TRP
105
A
ARG
110
A
ARG
110
A
ARG
120
A
ARG
120
A
TRP
178
A
TRP
178
A
VAL
183
A
VAL
183
A
GLY
78
A
GLY
78
A
ASN
84
A
ASN
84
A
HIS
73
A
HIS
73
A
ASP
75
A
ASP
75
A
PRO
64
A
PRO
64
A
LEU
70
A
LEU
70
A
ALA
52
A
ALA
52
A
VAL
58
A
VAL
58
A
ARG
98
A
ARG
98
A
TRP
105
A
TRP
105
A
ARG
110
A
ARG
110
A
ARG
120
A
ARG
120
A
GLN
187
A
GLN
187
A
GLN
192
A
GLN
192
A
ASP
200
A
ASP
200
A
ARG
206
A
ARG
206
A
TRP
211
A
TRP
211
A
LEU
216
A
LEU
216
B
PRO
64
B
PRO
64
B
LEU
70
B
LEU
70
B
ALA
52
B
ALA
52
B
VAL
58
B
VAL
58
B
ARG
98
B
ARG
98
B
PHE
103
B
PHE
103
B
ARG
110
B
ARG
110
B
ARG
120
B
ARG
120
B
TRP
178
B
TRP
178
B
VAL
183
B
VAL
183
B
GLY
78
B
GLY
78
B
ASN
84
B
ASN
84
B
HIS
73
B
HIS
73
B
ASP
75
B
ASP
75
B
PRO
64
B
PRO
64
B
LEU
70
B
LEU
70
B
ALA
52
B
ALA
52
B
VAL
58
B
VAL
58
B
ARG
98
B
ARG
98
B
PHE
103
B
PHE
103
B
ARG
110
B
ARG
110
B
ARG
120
B
ARG
120
B
GLN
187
B
GLN
187
B
GLN
192
B
GLN
192
B
ASP
200
B
ASP
200
B
GLU
207
B
GLU
207
B
ALA
210
B
ALA
210
B
ARG
215
B
ARG
215
BINDING SITE FOR RESIDUE PO4 A 275
A
PO4
275
Software
3
BINDING SITE FOR RESIDUE PO4 B 1275
B
PO4
1275
Software
4
BINDING SITE FOR RESIDUE FMN A 250
A
FMN
250
Software
15
BINDING SITE FOR RESIDUE FMN B 1250
B
FMN
1250
Software
14
A
ARG
24
A
ARG
24
3
1_555
A
ARG
215
A
ARG
215
3
1_555
A
HOH
317
G
HOH
3
1_555
B
ARG
23
B
ARG
23
4
1_555
B
ARG
24
B
ARG
24
4
1_555
B
ARG
25
B
ARG
25
4
1_555
B
ARG
215
B
ARG
215
4
1_555
A
ASP
49
A
ASP
49
15
1_555
A
ARG
67
A
ARG
67
15
1_555
A
ILE
68
A
ILE
68
15
1_555
A
LEU
70
A
LEU
70
15
1_555
A
LYS
72
A
LYS
72
15
1_555
A
TYR
82
A
TYR
82
15
1_555
A
THR
83
A
THR
83
15
1_555
A
SER
87
A
SER
87
15
1_555
A
ARG
88
A
ARG
88
15
1_555
A
LYS
89
A
LYS
89
15
1_555
A
HOH
291
G
HOH
15
1_555
B
HIS
106
B
HIS
106
15
1_555
B
GLN
111
B
GLN
111
15
1_555
B
TRP
191
B
TRP
191
15
1_555
B
ARG
201
B
ARG
201
15
1_555
A
GLN
111
A
GLN
111
14
1_555
A
TRP
191
A
TRP
191
14
1_555
A
ARG
201
A
ARG
201
14
1_555
B
ASP
49
B
ASP
49
14
1_555
B
ARG
67
B
ARG
67
14
1_555
B
ILE
68
B
ILE
68
14
1_555
B
VAL
69
B
VAL
69
14
1_555
B
LEU
70
B
LEU
70
14
1_555
B
TYR
82
B
TYR
82
14
1_555
B
THR
83
B
THR
83
14
1_555
B
SER
87
B
SER
87
14
1_555
B
ARG
88
B
ARG
88
14
1_555
B
LYS
89
B
LYS
89
14
1_555
B
HOH
1282
H
HOH
14
1_555
76
P 41