1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Dey, A. York, D. Smalls-Mantey, A. Summers, M.F. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer US Biochemistry BICHAW 0033 0006-2960 44 3735 3744 10.1021/bi047639q 15751950 Composition and sequence-dependent binding of RNA to the nucleocapsid protein of Moloney murine leukemia virus(,) 2005 10.2210/pdb1wwd/pdb pdb_00001wwd 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 1899.213 5'-R(P*AP*AP*CP*AP*GP*U)-3' 1 syn polymer 6377.248 Nucleoprotein p10 1 man polymer 65.409 ZINC ION 1 syn non-polymer Nucleocapsid Protein no no AACAGU AACAGU B polyribonucleotide no no ATVVSGQKQDRQGGERRRSQLDRDQCAYCKEKGHWAKDCPKKPRGPRGPRPQTSLL ATVVSGQKQDRQGGERRRSQLDRDQCAYCKEKGHWAKDCPKKPRGPRGPRPQTSLL A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Gammaretrovirus Murine leukemia virus Escherichia sample 11801 Moloney murine leukemia virus 562 Escherichia coli Plasmid pGEX-6P-1 database_2 pdbx_nmr_software pdbx_nmr_spectrometer pdbx_struct_assembly pdbx_struct_conn_angle pdbx_struct_oper_list struct_conn struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2005-03-22 1 1 2008-04-30 1 2 2011-07-13 1 3 2022-03-02 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _pdbx_nmr_spectrometer.model _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id NMR Structure Determined for MLV NC Complex with RNA Sequence UUUUGCU NMR Structure Determined for MLV NC Complex with RNA Sequence CCUCCGU NMR Structure Determined for MLV NC Complex with RNA Sequence UAUCUG PDBJ Y PDBJ 2005-01-05 REL REL ZN ZINC ION This structure was determined using standard 2D homonuclear techniques target function 40 20 2D NOESY 2D NOESY 2D TOCSY 10mM Tris-HCl, pH 7.0, 10mM NaCl, 0.1mM ZnCl2 7.0 1 atm 288 K The structures are based on a total of following restraints for: RNA: 30 intraresidue restraints, 37 Intermolecular NOE restraints and 12 Inter-molecular H-Bond restraints. NC protein: 22 intraresidue restraints and 40 H-bond restraints distance geometry 1 lowest energy Unlabelled RNA, 1mM RNA Concentration, in 10mM NaCl, 10mM Tris-HCl, pH 7.0, 0.1mM ZnCl2, 0.1mM BME 99.99% D2O Unlabelled NC Protein, 1mM Protein Concentration, in 10mM NaCl, 10mM Tris-HCl, pH 7.0, 0.1mM ZnCl2, 0.1mM BME 99.99% D2O Bruker collection XwinNMR 3.6 Delaglio, F. et.al processing NMRPipe Current refinement CYANA 800 Bruker AVANCE 600 Bruker DMX ZN 57 3 ZN ZN 57 A A 493 n 1 A 493 B A 494 n 2 A 494 B C 495 n 3 C 495 B A 496 n 4 A 496 B G 497 n 5 G 497 B U 498 n 6 U 498 B ALA 1 n 1 ALA 1 A THR 2 n 2 THR 2 A VAL 3 n 3 VAL 3 A VAL 4 n 4 VAL 4 A SER 5 n 5 SER 5 A GLY 6 n 6 GLY 6 A GLN 7 n 7 GLN 7 A LYS 8 n 8 LYS 8 A GLN 9 n 9 GLN 9 A ASP 10 n 10 ASP 10 A ARG 11 n 11 ARG 11 A GLN 12 n 12 GLN 12 A GLY 13 n 13 GLY 13 A GLY 14 n 14 GLY 14 A GLU 15 n 15 GLU 15 A ARG 16 n 16 ARG 16 A ARG 17 n 17 ARG 17 A ARG 18 n 18 ARG 18 A SER 19 n 19 SER 19 A GLN 20 n 20 GLN 20 A LEU 21 n 21 LEU 21 A ASP 22 n 22 ASP 22 A ARG 23 n 23 ARG 23 A ASP 24 n 24 ASP 24 A GLN 25 n 25 GLN 25 A CYS 26 n 26 CYS 26 A ALA 27 n 27 ALA 27 A TYR 28 n 28 TYR 28 A CYS 29 n 29 CYS 29 A LYS 30 n 30 LYS 30 A GLU 31 n 31 GLU 31 A LYS 32 n 32 LYS 32 A GLY 33 n 33 GLY 33 A HIS 34 n 34 HIS 34 A TRP 35 n 35 TRP 35 A ALA 36 n 36 ALA 36 A LYS 37 n 37 LYS 37 A ASP 38 n 38 ASP 38 A CYS 39 n 39 CYS 39 A PRO 40 n 40 PRO 40 A LYS 41 n 41 LYS 41 A LYS 42 n 42 LYS 42 A PRO 43 n 43 PRO 43 A ARG 44 n 44 ARG 44 A GLY 45 n 45 GLY 45 A PRO 46 n 46 PRO 46 A ARG 47 n 47 ARG 47 A GLY 48 n 48 GLY 48 A PRO 49 n 49 PRO 49 A ARG 50 n 50 ARG 50 A PRO 51 n 51 PRO 51 A GLN 52 n 52 GLN 52 A THR 53 n 53 THR 53 A SER 54 n 54 SER 54 A LEU 55 n 55 LEU 55 A LEU 56 n 56 LEU 56 A author_defined_assembly 2 dimeric A CYS 26 B SG CYS 26 1_555 A ZN 57 C ZN ZN 1_555 A CYS 29 B SG CYS 29 1_555 109.3 A CYS 26 B SG CYS 26 1_555 A ZN 57 C ZN ZN 1_555 A HIS 34 B NE2 HIS 34 1_555 108.4 A CYS 29 B SG CYS 29 1_555 A ZN 57 C ZN ZN 1_555 A HIS 34 B NE2 HIS 34 1_555 108.3 A CYS 26 B SG CYS 26 1_555 A ZN 57 C ZN ZN 1_555 A CYS 39 B SG CYS 39 1_555 106.6 A CYS 29 B SG CYS 29 1_555 A ZN 57 C ZN ZN 1_555 A CYS 39 B SG CYS 39 1_555 106.7 A HIS 34 B NE2 HIS 34 1_555 A ZN 57 C ZN ZN 1_555 A CYS 39 B SG CYS 39 1_555 117.4 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 20 B B HO2' OP2 C G 495 497 1.51 1 6.19 0.80 109.90 116.09 B B B C1' O4' C4' A A A 493 493 493 N 1 -8.67 1.00 104.00 95.33 B B B O4' C4' C3' C C C 495 495 495 N 1 7.12 0.80 109.90 117.02 B B B C1' O4' C4' C C C 495 495 495 N 1 -6.57 1.00 104.00 97.43 B B B O4' C4' C3' A A A 496 496 496 N 1 7.11 0.80 109.90 117.01 B B B C1' O4' C4' A A A 496 496 496 N 1 -7.20 1.00 104.00 96.80 B B B O4' C4' C3' G G G 497 497 497 N 1 7.25 0.80 109.90 117.15 B B B C1' O4' C4' G G G 497 497 497 N 1 -6.62 0.60 125.10 118.48 B B B C6 N1 C2 G G G 497 497 497 N 1 5.21 0.60 123.90 129.11 B B B N1 C2 N3 G G G 497 497 497 N 1 5.91 0.50 111.50 117.41 B B B C5 C6 N1 G G G 497 497 497 N 1 -12.25 1.00 104.00 91.75 B B B O4' C4' C3' U U U 498 498 498 N 1 4.83 0.80 109.90 114.73 B B B C1' O4' C4' U U U 498 498 498 N 2 -10.92 1.00 104.00 93.08 B B B O4' C4' C3' A A A 493 493 493 N 2 6.40 0.80 109.90 116.30 B B B C1' O4' C4' A A A 493 493 493 N 2 -8.00 1.00 104.00 96.00 B B B O4' C4' C3' C C C 495 495 495 N 2 7.34 0.80 109.90 117.24 B B B C1' O4' C4' C C C 495 495 495 N 2 -7.25 1.00 104.00 96.75 B B B O4' C4' C3' A A A 496 496 496 N 2 7.35 0.80 109.90 117.25 B B B C1' O4' C4' A A A 496 496 496 N 2 -7.63 1.00 104.00 96.37 B B B O4' C4' C3' G G G 497 497 497 N 2 6.93 0.80 109.90 116.83 B B B C1' O4' C4' G G G 497 497 497 N 2 -6.59 0.60 125.10 118.51 B B B C6 N1 C2 G G G 497 497 497 N 2 5.25 0.60 123.90 129.15 B B B N1 C2 N3 G G G 497 497 497 N 2 5.87 0.50 111.50 117.37 B B B C5 C6 N1 G G G 497 497 497 N 2 -13.11 1.00 104.00 90.89 B B B O4' C4' C3' U U U 498 498 498 N 3 -8.66 1.00 104.00 95.34 B B B O4' C4' C3' A A A 493 493 493 N 3 7.14 0.80 109.90 117.04 B B B C1' O4' C4' A A A 493 493 493 N 3 -12.99 1.00 104.00 91.01 B B B O4' C4' C3' A A A 494 494 494 N 3 -7.46 1.00 104.00 96.54 B B B O4' C4' C3' C C C 495 495 495 N 3 7.32 0.80 109.90 117.22 B B B C1' O4' C4' C C C 495 495 495 N 3 -7.99 1.00 104.00 96.01 B B B O4' C4' C3' A A A 496 496 496 N 3 7.41 0.80 109.90 117.31 B B B C1' O4' C4' A A A 496 496 496 N 3 -7.20 1.00 104.00 96.80 B B B O4' C4' C3' G G G 497 497 497 N 3 6.88 0.80 109.90 116.78 B B B C1' O4' C4' G G G 497 497 497 N 3 -6.61 0.60 125.10 118.49 B B B C6 N1 C2 G G G 497 497 497 N 3 5.22 0.60 123.90 129.12 B B B N1 C2 N3 G G G 497 497 497 N 3 5.90 0.50 111.50 117.40 B B B C5 C6 N1 G G G 497 497 497 N 3 -12.50 1.00 104.00 91.50 B B B O4' C4' C3' U U U 498 498 498 N 4 -7.26 1.00 104.00 96.74 B B B O4' C4' C3' A A A 493 493 493 N 4 7.25 0.80 109.90 117.15 B B B C1' O4' C4' A A A 493 493 493 N 4 -12.93 1.00 104.00 91.07 B B B O4' C4' C3' A A A 494 494 494 N 4 -7.50 1.00 104.00 96.50 B B B O4' C4' C3' C C C 495 495 495 N 4 7.39 0.80 109.90 117.29 B B B C1' O4' C4' C C C 495 495 495 N 4 -7.75 1.00 104.00 96.25 B B B O4' C4' C3' A A A 496 496 496 N 4 7.45 0.80 109.90 117.35 B B B C1' O4' C4' A A A 496 496 496 N 4 -8.26 1.00 104.00 95.74 B B B O4' C4' C3' G G G 497 497 497 N 4 6.97 0.80 109.90 116.87 B B B C1' O4' C4' G G G 497 497 497 N 4 -6.57 0.60 125.10 118.53 B B B C6 N1 C2 G G G 497 497 497 N 4 5.17 0.60 123.90 129.07 B B B N1 C2 N3 G G G 497 497 497 N 4 5.92 0.50 111.50 117.42 B B B C5 C6 N1 G G G 497 497 497 N 4 -11.96 1.00 104.00 92.04 B B B O4' C4' C3' U U U 498 498 498 N 4 5.52 0.80 109.90 115.42 B B B C1' O4' C4' U U U 498 498 498 N 5 -12.42 1.00 104.00 91.58 B B B O4' C4' C3' A A A 493 493 493 N 5 -4.23 0.70 109.70 105.47 B B B C1' O4' C4' A A A 494 494 494 N 5 -8.75 1.00 104.00 95.25 B B B O4' C4' C3' C C C 495 495 495 N 5 7.25 0.80 109.90 117.15 B B B C1' O4' C4' C C C 495 495 495 N 5 -13.06 1.00 104.00 90.94 B B B O4' C4' C3' A A A 496 496 496 N 5 -8.12 1.00 104.00 95.88 B B B O4' C4' C3' G G G 497 497 497 N 5 6.95 0.80 109.90 116.85 B B B C1' O4' C4' G G G 497 497 497 N 5 -6.63 0.60 125.10 118.47 B B B C6 N1 C2 G G G 497 497 497 N 5 5.18 0.60 123.90 129.08 B B B N1 C2 N3 G G G 497 497 497 N 5 5.90 0.50 111.50 117.40 B B B C5 C6 N1 G G G 497 497 497 N 5 -12.94 1.00 104.00 91.06 B B B O4' C4' C3' U U U 498 498 498 N 6 -12.11 1.00 104.00 91.89 B B B O4' C4' C3' A A A 493 493 493 N 6 -8.64 1.00 104.00 95.36 B B B O4' C4' C3' C C C 495 495 495 N 6 7.39 0.80 109.90 117.29 B B B C1' O4' C4' C C C 495 495 495 N 6 -12.43 1.00 104.00 91.57 B B B O4' C4' C3' A A A 496 496 496 N 6 -8.40 1.00 104.00 95.60 B B B O4' C4' C3' G G G 497 497 497 N 6 6.97 0.80 109.90 116.87 B B B C1' O4' C4' G G G 497 497 497 N 6 -6.58 0.60 125.10 118.52 B B B C6 N1 C2 G G G 497 497 497 N 6 5.25 0.60 123.90 129.15 B B B N1 C2 N3 G G G 497 497 497 N 6 5.85 0.50 111.50 117.35 B B B C5 C6 N1 G G G 497 497 497 N 6 -12.80 1.00 104.00 91.20 B B B O4' C4' C3' U U U 498 498 498 N 7 4.91 0.80 109.90 114.81 B B B C1' O4' C4' A A A 493 493 493 N 7 5.09 0.80 109.90 114.99 B B B C1' O4' C4' C C C 495 495 495 N 7 -6.17 1.00 104.00 97.83 B B B O4' C4' C3' A A A 496 496 496 N 7 7.00 0.80 109.90 116.90 B B B C1' O4' C4' A A A 496 496 496 N 7 -6.99 1.00 104.00 97.01 B B B O4' C4' C3' G G G 497 497 497 N 7 7.25 0.80 109.90 117.15 B B B C1' O4' C4' G G G 497 497 497 N 7 -6.60 0.60 125.10 118.50 B B B C6 N1 C2 G G G 497 497 497 N 7 5.20 0.60 123.90 129.10 B B B N1 C2 N3 G G G 497 497 497 N 7 5.91 0.50 111.50 117.41 B B B C5 C6 N1 G G G 497 497 497 N 7 -12.17 1.00 104.00 91.83 B B B O4' C4' C3' U U U 498 498 498 N 7 5.41 0.80 109.90 115.31 B B B C1' O4' C4' U U U 498 498 498 N 8 4.98 0.80 109.90 114.88 B B B C1' O4' C4' A A A 493 493 493 N 8 -8.18 1.00 104.00 95.82 B B B O4' C4' C3' C C C 495 495 495 N 8 7.28 0.80 109.90 117.18 B B B C1' O4' C4' C C C 495 495 495 N 8 -6.55 1.00 104.00 97.45 B B B O4' C4' C3' A A A 496 496 496 N 8 7.22 0.80 109.90 117.12 B B B C1' O4' C4' A A A 496 496 496 N 8 -7.70 1.00 104.00 96.30 B B B O4' C4' C3' G G G 497 497 497 N 8 6.98 0.80 109.90 116.88 B B B C1' O4' C4' G G G 497 497 497 N 8 -6.56 0.60 125.10 118.54 B B B C6 N1 C2 G G G 497 497 497 N 8 5.16 0.60 123.90 129.06 B B B N1 C2 N3 G G G 497 497 497 N 8 5.88 0.50 111.50 117.38 B B B C5 C6 N1 G G G 497 497 497 N 8 -12.68 1.00 104.00 91.32 B B B O4' C4' C3' U U U 498 498 498 N 9 -8.77 1.00 104.00 95.23 B B B O4' C4' C3' A A A 493 493 493 N 9 7.31 0.80 109.90 117.21 B B B C1' O4' C4' A A A 493 493 493 N 9 -12.94 1.00 104.00 91.06 B B B O4' C4' C3' A A A 494 494 494 N 9 -7.28 1.00 104.00 96.72 B B B O4' C4' C3' C C C 495 495 495 N 9 7.31 0.80 109.90 117.21 B B B C1' O4' C4' C C C 495 495 495 N 9 -12.25 1.00 104.00 91.75 B B B O4' C4' C3' A A A 496 496 496 N 9 -8.59 1.00 104.00 95.41 B B B O4' C4' C3' G G G 497 497 497 N 9 7.01 0.80 109.90 116.91 B B B C1' O4' C4' G G G 497 497 497 N 9 -6.67 0.60 125.10 118.43 B B B C6 N1 C2 G G G 497 497 497 N 9 5.24 0.60 123.90 129.14 B B B N1 C2 N3 G G G 497 497 497 N 9 5.97 0.50 111.50 117.47 B B B C5 C6 N1 G G G 497 497 497 N 9 -10.05 1.00 104.00 93.95 B B B O4' C4' C3' U U U 498 498 498 N 9 6.77 0.80 109.90 116.67 B B B C1' O4' C4' U U U 498 498 498 N 10 5.13 0.80 109.90 115.03 B B B C1' O4' C4' A A A 493 493 493 N 10 -7.11 1.00 104.00 96.89 B B B O4' C4' C3' C C C 495 495 495 N 10 7.42 0.80 109.90 117.32 B B B C1' O4' C4' C C C 495 495 495 N 10 -12.56 1.00 104.00 91.44 B B B O4' C4' C3' A A A 496 496 496 N 10 -10.57 1.00 104.00 93.43 B B B O4' C4' C3' G G G 497 497 497 N 10 6.57 0.80 109.90 116.47 B B B C1' O4' C4' G G G 497 497 497 N 10 -6.66 0.60 125.10 118.44 B B B C6 N1 C2 G G G 497 497 497 N 10 5.20 0.60 123.90 129.10 B B B N1 C2 N3 G G G 497 497 497 N 10 5.93 0.50 111.50 117.43 B B B C5 C6 N1 G G G 497 497 497 N 10 -13.38 1.00 104.00 90.62 B B B O4' C4' C3' U U U 498 498 498 N 11 -8.17 1.00 104.00 95.83 B B B O4' C4' C3' A A A 493 493 493 N 11 7.35 0.80 109.90 117.25 B B B C1' O4' C4' A A A 493 493 493 N 11 -12.68 1.00 104.00 91.32 B B B O4' C4' C3' A A A 494 494 494 N 11 -7.30 1.00 104.00 96.70 B B B O4' C4' C3' C C C 495 495 495 N 11 7.34 0.80 109.90 117.24 B B B C1' O4' C4' C C C 495 495 495 N 11 -6.58 1.00 104.00 97.42 B B B O4' C4' C3' A A A 496 496 496 N 11 7.13 0.80 109.90 117.03 B B B C1' O4' C4' A A A 496 496 496 N 11 -7.67 1.00 104.00 96.33 B B B O4' C4' C3' G G G 497 497 497 N 11 7.23 0.80 109.90 117.13 B B B C1' O4' C4' G G G 497 497 497 N 11 -6.59 0.60 125.10 118.51 B B B C6 N1 C2 G G G 497 497 497 N 11 5.27 0.60 123.90 129.17 B B B N1 C2 N3 G G G 497 497 497 N 11 5.86 0.50 111.50 117.36 B B B C5 C6 N1 G G G 497 497 497 N 11 -10.47 1.00 104.00 93.53 B B B O4' C4' C3' U U U 498 498 498 N 11 6.67 0.80 109.90 116.57 B B B C1' O4' C4' U U U 498 498 498 N 12 -7.34 1.00 104.00 96.66 B B B O4' C4' C3' A A A 493 493 493 N 12 7.29 0.80 109.90 117.19 B B B C1' O4' C4' A A A 493 493 493 N 12 -12.99 1.00 104.00 91.01 B B B O4' C4' C3' A A A 494 494 494 N 12 -7.47 1.00 104.00 96.53 B B B O4' C4' C3' C C C 495 495 495 N 12 7.30 0.80 109.90 117.20 B B B C1' O4' C4' C C C 495 495 495 N 12 -7.69 1.00 104.00 96.31 B B B O4' C4' C3' A A A 496 496 496 N 12 7.43 0.80 109.90 117.33 B B B C1' O4' C4' A A A 496 496 496 N 12 -8.29 1.00 104.00 95.71 B B B O4' C4' C3' G G G 497 497 497 N 12 7.01 0.80 109.90 116.91 B B B C1' O4' C4' G G G 497 497 497 N 12 -6.62 0.60 125.10 118.48 B B B C6 N1 C2 G G G 497 497 497 N 12 5.29 0.60 123.90 129.19 B B B N1 C2 N3 G G G 497 497 497 N 12 5.87 0.50 111.50 117.37 B B B C5 C6 N1 G G G 497 497 497 N 12 -11.95 1.00 104.00 92.05 B B B O4' C4' C3' U U U 498 498 498 N 12 5.45 0.80 109.90 115.35 B B B C1' O4' C4' U U U 498 498 498 N 13 -8.70 1.00 104.00 95.30 B B B O4' C4' C3' A A A 493 493 493 N 13 7.10 0.80 109.90 117.00 B B B C1' O4' C4' A A A 493 493 493 N 13 -12.97 1.00 104.00 91.03 B B B O4' C4' C3' A A A 494 494 494 N 13 -7.48 1.00 104.00 96.52 B B B O4' C4' C3' C C C 495 495 495 N 13 7.31 0.80 109.90 117.21 B B B C1' O4' C4' C C C 495 495 495 N 13 -7.96 1.00 104.00 96.04 B B B O4' C4' C3' A A A 496 496 496 N 13 7.43 0.80 109.90 117.33 B B B C1' O4' C4' A A A 496 496 496 N 13 -7.20 1.00 104.00 96.80 B B B O4' C4' C3' G G G 497 497 497 N 13 6.89 0.80 109.90 116.79 B B B C1' O4' C4' G G G 497 497 497 N 13 -6.61 0.60 125.10 118.49 B B B C6 N1 C2 G G G 497 497 497 N 13 5.25 0.60 123.90 129.15 B B B N1 C2 N3 G G G 497 497 497 N 13 5.94 0.50 111.50 117.44 B B B C5 C6 N1 G G G 497 497 497 N 13 -12.45 1.00 104.00 91.55 B B B O4' C4' C3' U U U 498 498 498 N 14 -12.85 1.00 104.00 91.15 B B B O4' C4' C3' A A A 493 493 493 N 14 -4.59 0.70 109.70 105.11 B B B C1' O4' C4' A A A 494 494 494 N 14 -9.78 1.00 104.00 94.22 B B B O4' C4' C3' C C C 495 495 495 N 14 7.04 0.80 109.90 116.94 B B B C1' O4' C4' C C C 495 495 495 N 14 -7.55 1.00 104.00 96.45 B B B O4' C4' C3' A A A 496 496 496 N 14 7.31 0.80 109.90 117.21 B B B C1' O4' C4' A A A 496 496 496 N 14 -8.92 1.00 104.00 95.08 B B B O4' C4' C3' G G G 497 497 497 N 14 7.27 0.80 109.90 117.17 B B B C1' O4' C4' G G G 497 497 497 N 14 -6.62 0.60 125.10 118.48 B B B C6 N1 C2 G G G 497 497 497 N 14 5.24 0.60 123.90 129.14 B B B N1 C2 N3 G G G 497 497 497 N 14 5.92 0.50 111.50 117.42 B B B C5 C6 N1 G G G 497 497 497 N 14 -7.95 1.00 104.00 96.05 B B B O4' C4' C3' U U U 498 498 498 N 14 6.94 0.80 109.90 116.84 B B B C1' O4' C4' U U U 498 498 498 N 15 -12.11 1.00 104.00 91.89 B B B O4' C4' C3' A A A 493 493 493 N 15 -8.64 1.00 104.00 95.36 B B B O4' C4' C3' C C C 495 495 495 N 15 7.34 0.80 109.90 117.24 B B B C1' O4' C4' C C C 495 495 495 N 15 -12.46 1.00 104.00 91.54 B B B O4' C4' C3' A A A 496 496 496 N 15 -8.34 1.00 104.00 95.66 B B B O4' C4' C3' G G G 497 497 497 N 15 6.99 0.80 109.90 116.89 B B B C1' O4' C4' G G G 497 497 497 N 15 -6.55 0.60 125.10 118.55 B B B C6 N1 C2 G G G 497 497 497 N 15 5.18 0.60 123.90 129.08 B B B N1 C2 N3 G G G 497 497 497 N 15 5.87 0.50 111.50 117.37 B B B C5 C6 N1 G G G 497 497 497 N 15 -12.84 1.00 104.00 91.16 B B B O4' C4' C3' U U U 498 498 498 N 16 -6.23 1.00 104.00 97.77 B B B O4' C4' C3' A A A 493 493 493 N 16 7.04 0.80 109.90 116.94 B B B C1' O4' C4' A A A 493 493 493 N 16 -10.01 1.00 104.00 93.99 B B B O4' C4' C3' C C C 495 495 495 N 16 6.84 0.80 109.90 116.74 B B B C1' O4' C4' C C C 495 495 495 N 16 -8.22 1.00 104.00 95.78 B B B O4' C4' C3' A A A 496 496 496 N 16 7.43 0.80 109.90 117.33 B B B C1' O4' C4' A A A 496 496 496 N 16 -6.19 1.00 104.00 97.81 B B B O4' C4' C3' G G G 497 497 497 N 16 6.38 0.80 109.90 116.28 B B B C1' O4' C4' G G G 497 497 497 N 16 -6.65 0.60 125.10 118.45 B B B C6 N1 C2 G G G 497 497 497 N 16 5.23 0.60 123.90 129.13 B B B N1 C2 N3 G G G 497 497 497 N 16 5.91 0.50 111.50 117.41 B B B C5 C6 N1 G G G 497 497 497 N 16 -8.03 1.00 104.00 95.97 B B B O4' C4' C3' U U U 498 498 498 N 16 7.11 0.80 109.90 117.01 B B B C1' O4' C4' U U U 498 498 498 N 17 6.40 0.80 109.90 116.30 B B B C1' O4' C4' A A A 493 493 493 N 17 6.62 0.80 109.90 116.52 B B B C1' O4' C4' C C C 495 495 495 N 17 -12.55 1.00 104.00 91.45 B B B O4' C4' C3' A A A 496 496 496 N 17 -7.28 1.00 104.00 96.72 B B B O4' C4' C3' G G G 497 497 497 N 17 7.33 0.80 109.90 117.23 B B B C1' O4' C4' G G G 497 497 497 N 17 -6.56 0.60 125.10 118.54 B B B C6 N1 C2 G G G 497 497 497 N 17 5.18 0.60 123.90 129.08 B B B N1 C2 N3 G G G 497 497 497 N 17 5.90 0.50 111.50 117.40 B B B C5 C6 N1 G G G 497 497 497 N 17 -12.21 1.00 104.00 91.79 B B B O4' C4' C3' U U U 498 498 498 N 17 5.03 0.80 109.90 114.93 B B B C1' O4' C4' U U U 498 498 498 N 18 -6.42 1.00 104.00 97.58 B B B O4' C4' C3' A A A 493 493 493 N 18 7.07 0.80 109.90 116.97 B B B C1' O4' C4' A A A 493 493 493 N 18 -13.01 1.00 104.00 90.99 B B B O4' C4' C3' A A A 494 494 494 N 18 -6.93 1.00 104.00 97.07 B B B O4' C4' C3' C C C 495 495 495 N 18 7.23 0.80 109.90 117.13 B B B C1' O4' C4' C C C 495 495 495 N 18 -7.59 1.00 104.00 96.41 B B B O4' C4' C3' A A A 496 496 496 N 18 7.56 0.80 109.90 117.46 B B B C1' O4' C4' A A A 496 496 496 N 18 -6.67 1.00 104.00 97.33 B B B O4' C4' C3' G G G 497 497 497 N 18 7.15 0.80 109.90 117.05 B B B C1' O4' C4' G G G 497 497 497 N 18 -6.66 0.60 125.10 118.44 B B B C6 N1 C2 G G G 497 497 497 N 18 5.25 0.60 123.90 129.15 B B B N1 C2 N3 G G G 497 497 497 N 18 5.91 0.50 111.50 117.41 B B B C5 C6 N1 G G G 497 497 497 N 18 6.54 0.80 109.90 116.44 B B B C1' O4' C4' U U U 498 498 498 N 19 -10.63 1.00 104.00 93.37 B B B O4' C4' C3' A A A 493 493 493 N 19 6.57 0.80 109.90 116.47 B B B C1' O4' C4' A A A 493 493 493 N 19 6.27 0.80 109.90 116.17 B B B C1' O4' C4' C C C 495 495 495 N 19 -12.52 1.00 104.00 91.48 B B B O4' C4' C3' A A A 496 496 496 N 19 -9.22 1.00 104.00 94.78 B B B O4' C4' C3' G G G 497 497 497 N 19 7.00 0.80 109.90 116.90 B B B C1' O4' C4' G G G 497 497 497 N 19 -6.57 0.60 125.10 118.53 B B B C6 N1 C2 G G G 497 497 497 N 19 5.18 0.60 123.90 129.08 B B B N1 C2 N3 G G G 497 497 497 N 19 5.86 0.50 111.50 117.36 B B B C5 C6 N1 G G G 497 497 497 N 19 -12.64 1.00 104.00 91.36 B B B O4' C4' C3' U U U 498 498 498 N 20 6.14 0.80 109.90 116.04 B B B C1' O4' C4' A A A 493 493 493 N 20 -7.67 1.00 104.00 96.33 B B B O4' C4' C3' C C C 495 495 495 N 20 7.26 0.80 109.90 117.16 B B B C1' O4' C4' C C C 495 495 495 N 20 -8.28 1.00 104.00 95.72 B B B O4' C4' C3' A A A 496 496 496 N 20 7.39 0.80 109.90 117.29 B B B C1' O4' C4' A A A 496 496 496 N 20 -7.82 1.00 104.00 96.18 B B B O4' C4' C3' G G G 497 497 497 N 20 6.90 0.80 109.90 116.80 B B B C1' O4' C4' G G G 497 497 497 N 20 -6.65 0.60 125.10 118.45 B B B C6 N1 C2 G G G 497 497 497 N 20 5.17 0.60 123.90 129.07 B B B N1 C2 N3 G G G 497 497 497 N 20 5.99 0.50 111.50 117.49 B B B C5 C6 N1 G G G 497 497 497 N 20 5.74 0.80 109.90 115.64 B B B C1' O4' C4' U U U 498 498 498 N 1 A GLU 15 -177.81 126.37 1 A ARG 17 -179.93 51.75 1 A ARG 18 -179.88 54.74 1 A SER 19 39.36 -150.43 1 A GLN 20 -91.02 30.90 1 A LEU 21 -57.06 88.05 1 A ALA 27 -99.78 34.43 1 A TYR 28 -129.38 -58.04 1 A LYS 30 90.16 25.85 1 A GLN 52 -167.06 106.48 2 A GLN 7 -153.36 -58.08 2 A GLU 15 -108.37 74.77 2 A ARG 17 179.44 119.53 2 A ARG 18 -118.85 76.94 2 A TYR 28 -129.76 -57.62 2 A LYS 30 89.03 24.08 2 A GLN 52 65.37 88.25 3 A VAL 4 -134.73 -48.73 3 A GLN 7 -157.15 -61.09 3 A ASP 10 59.70 98.29 3 A GLN 12 -92.59 -67.70 3 A ARG 17 53.36 171.77 3 A ARG 18 -148.13 52.62 3 A GLN 20 38.88 51.52 3 A LEU 21 -54.13 89.91 3 A ALA 27 -97.21 34.44 3 A TYR 28 -130.28 -60.45 3 A LYS 30 89.20 23.06 3 A GLN 52 49.30 76.81 3 A SER 54 60.36 106.87 4 A GLN 7 -158.01 75.46 4 A ARG 11 -179.86 -54.98 4 A GLN 12 64.98 135.56 4 A SER 19 39.23 -150.58 4 A GLN 20 -91.08 31.70 4 A LEU 21 -65.47 82.92 4 A ALA 27 -98.83 35.88 4 A TYR 28 -131.20 -53.29 4 A LYS 30 88.07 22.27 4 A SER 54 -173.75 147.54 5 A GLN 9 55.32 167.57 5 A ARG 11 -168.20 -61.85 5 A GLU 15 63.02 144.97 5 A ARG 16 -128.33 -51.79 5 A ARG 18 -100.38 77.01 5 A SER 19 -42.75 96.26 5 A GLN 20 38.49 50.95 5 A ALA 27 -95.94 33.83 5 A TYR 28 -127.99 -57.74 5 A LYS 30 89.60 21.26 5 A ARG 50 -177.53 149.99 5 A THR 53 59.67 97.20 5 A LEU 55 66.17 129.52 6 A THR 2 60.96 114.91 6 A SER 5 178.60 170.16 6 A GLN 7 178.58 142.67 6 A ASP 10 176.92 165.44 6 A ARG 11 66.46 150.36 6 A GLN 12 -123.51 -58.53 6 A GLU 15 -130.63 -67.19 6 A ARG 16 -178.64 133.61 6 A SER 19 -44.25 94.79 6 A GLN 20 36.68 43.10 6 A TYR 28 -127.77 -55.00 6 A LYS 30 91.18 26.59 6 A ARG 47 -39.78 109.61 7 A VAL 3 -173.56 129.27 7 A GLN 12 177.74 142.08 7 A GLU 15 -162.31 106.87 7 A ARG 16 62.46 130.92 7 A ARG 18 -156.62 51.08 7 A LEU 21 -44.74 96.38 7 A TYR 28 -142.68 -55.94 7 A LYS 30 90.23 25.64 7 A ARG 44 175.61 153.86 7 A ARG 47 62.00 94.00 7 A ARG 50 62.07 138.62 7 A THR 53 -49.19 107.26 7 A LEU 55 -90.43 -63.18 8 A VAL 3 -155.56 75.96 8 A GLN 7 -171.39 115.02 8 A GLU 15 -176.03 -60.39 8 A ARG 17 -39.10 155.07 8 A SER 19 58.14 -85.61 8 A GLN 20 -160.93 30.90 8 A LEU 21 -43.21 97.09 8 A ALA 27 -99.96 34.42 8 A TYR 28 -128.58 -54.15 8 A LYS 30 90.38 25.28 8 A ARG 44 49.41 88.30 8 A GLN 52 57.92 89.76 9 A GLN 12 -176.53 131.64 9 A GLU 15 -169.79 -53.75 9 A ARG 16 52.64 77.04 9 A ARG 17 174.53 97.62 9 A ARG 18 -111.56 75.05 9 A SER 19 -47.85 97.74 9 A GLN 20 38.72 33.55 9 A LEU 21 -62.79 83.45 9 A TYR 28 -130.53 -61.32 9 A LYS 30 88.59 20.63 9 A ARG 44 179.96 169.20 9 A ARG 47 45.55 89.30 9 A GLN 52 -147.19 -58.13 10 A GLN 7 -174.46 122.48 10 A ARG 16 59.10 110.29 10 A ARG 18 173.85 79.50 10 A GLN 20 38.68 53.95 10 A LEU 21 -47.71 95.27 10 A TYR 28 -127.14 -53.89 10 A LYS 30 94.04 -27.20 10 A PRO 43 -74.93 -162.48 10 A ARG 47 66.87 154.69 10 A ARG 50 41.40 91.85 10 A GLN 52 64.30 122.83 10 A THR 53 -108.58 68.62 10 A SER 54 -166.67 116.00 10 A LEU 55 -156.95 -63.85 11 A LYS 8 -108.40 -62.87 11 A ARG 11 -179.92 90.77 11 A ARG 18 -104.71 51.26 11 A SER 19 -39.24 108.52 11 A GLN 20 38.03 57.12 11 A TYR 28 -133.01 -56.57 11 A LYS 30 93.82 29.21 11 A ARG 44 62.91 135.61 11 A ARG 50 62.94 140.53 11 A GLN 52 -139.08 -61.18 12 A GLN 7 -158.03 75.43 12 A ARG 11 -179.88 -54.96 12 A GLN 12 64.97 135.54 12 A SER 19 39.33 -150.69 12 A GLN 20 -91.00 31.78 12 A LEU 21 -65.61 82.97 12 A ALA 27 -98.84 35.88 12 A TYR 28 -131.17 -53.34 12 A LYS 30 88.03 22.27 12 A SER 54 -173.69 147.62 13 A VAL 4 -134.74 -48.83 13 A GLN 7 -157.21 -61.13 13 A ASP 10 59.64 98.30 13 A GLN 12 -92.61 -67.70 13 A ARG 17 53.29 171.73 13 A ARG 18 -148.14 52.71 13 A GLN 20 38.98 51.42 13 A LEU 21 -54.21 90.03 13 A ALA 27 -97.25 34.54 13 A TYR 28 -130.31 -60.44 13 A LYS 30 89.15 23.22 13 A GLN 52 49.32 76.78 13 A SER 54 60.35 106.78 14 A THR 2 65.06 -74.41 14 A VAL 3 63.92 93.17 14 A GLN 7 -173.53 140.39 14 A ASP 10 64.21 170.98 14 A GLN 12 73.93 -57.70 14 A ARG 16 71.38 -60.31 14 A ARG 17 -178.81 -56.43 14 A ARG 18 40.26 70.15 14 A SER 19 -41.26 96.75 14 A GLN 20 38.82 53.85 14 A ALA 27 -99.93 35.45 14 A TYR 28 -129.23 -51.56 14 A LYS 30 90.04 26.40 14 A ARG 47 -65.81 85.49 14 A SER 54 -144.83 -58.68 15 A THR 2 60.96 115.00 15 A SER 5 178.60 170.16 15 A GLN 7 178.61 142.64 15 A ASP 10 176.96 165.44 15 A ARG 11 66.47 150.33 15 A GLN 12 -123.43 -58.56 15 A GLU 15 -130.64 -67.10 15 A ARG 16 -178.68 133.61 15 A SER 19 -44.33 94.81 15 A GLN 20 36.71 43.14 15 A TYR 28 -127.69 -55.13 15 A LYS 30 91.23 26.53 15 A ARG 47 -39.70 109.62 16 A VAL 4 64.01 123.54 16 A GLN 7 -48.18 152.20 16 A GLN 9 -172.56 138.14 16 A ARG 18 179.95 60.55 16 A LEU 21 -52.97 98.93 16 A TYR 28 -127.19 -58.29 16 A LYS 30 89.59 26.53 16 A SER 54 67.90 148.91 17 A THR 2 61.36 146.13 17 A ARG 17 59.53 112.01 17 A SER 19 38.28 -151.76 17 A GLN 20 -90.65 36.17 17 A LEU 21 -63.07 83.11 17 A TYR 28 -125.82 -52.35 17 A LYS 30 93.58 -29.42 17 A GLU 31 -37.04 128.72 17 A LYS 42 -54.54 108.57 17 A GLN 52 58.47 161.96 17 A THR 53 61.79 154.49 17 A SER 54 62.07 82.00 18 A THR 2 57.16 71.58 18 A VAL 3 -107.52 54.21 18 A GLU 15 -168.46 -59.29 18 A ARG 17 -54.20 -179.45 18 A ARG 18 -141.27 49.25 18 A LEU 21 -46.89 95.39 18 A ALA 27 -98.05 34.70 18 A TYR 28 -131.73 -62.73 18 A LYS 30 93.61 26.62 18 A LYS 42 -39.66 100.00 18 A ARG 47 75.25 139.34 18 A ARG 50 60.64 87.08 18 A GLN 52 61.79 68.22 18 A THR 53 -157.01 77.29 18 A LEU 55 -112.15 67.84 19 A VAL 3 -170.14 136.46 19 A ASP 10 177.57 167.80 19 A GLN 12 65.31 96.26 19 A GLU 15 62.22 171.14 19 A ARG 16 64.47 125.98 19 A SER 19 -41.43 97.53 19 A GLN 20 38.57 43.66 19 A LEU 21 -68.34 94.64 19 A ALA 27 -92.18 33.24 19 A TYR 28 -129.43 -63.04 19 A LYS 30 89.99 22.35 19 A ARG 47 63.91 163.14 19 A ARG 50 55.03 95.14 19 A GLN 52 -171.78 -59.70 19 A THR 53 37.55 -155.75 19 A SER 54 60.96 144.64 19 A LEU 55 73.66 -69.77 20 A THR 2 -173.06 64.19 20 A GLU 15 58.78 156.89 20 A ARG 16 -134.83 -57.75 20 A SER 19 37.84 -148.09 20 A GLN 20 -94.70 43.13 20 A LEU 21 -39.50 98.39 20 A TYR 28 -121.51 -53.03 20 A LYS 30 93.48 -27.41 20 A ARG 44 -162.48 115.32 20 A ARG 47 61.33 128.15 20 A LEU 55 -147.47 -64.32 NMR structure determined for MLV NC complex with RNA sequence AACAGU 1 N N 2 N N 3 N N A TRP 35 B TRP 35 HELX_P A CYS 39 B CYS 39 5 1 5 metalc 2.312 A CYS 26 B SG CYS 26 1_555 A ZN 57 C ZN ZN 1_555 metalc 2.306 A CYS 29 B SG CYS 29 1_555 A ZN 57 C ZN ZN 1_555 metalc 1.994 A HIS 34 B NE2 HIS 34 1_555 A ZN 57 C ZN ZN 1_555 metalc 2.303 A CYS 39 B SG CYS 39 1_555 A ZN 57 C ZN ZN 1_555 Viral protein/RNA hydrophobic Guanosine Binding Pocket, Viral protein-RNA COMPLEX A GLY 45 B GLY 45 1 A PRO 46 B PRO 46 -0.06 A GLY 45 B GLY 45 2 A PRO 46 B PRO 46 0.06 A GLY 45 B GLY 45 3 A PRO 46 B PRO 46 -0.04 A GLY 45 B GLY 45 4 A PRO 46 B PRO 46 0.04 A GLY 45 B GLY 45 5 A PRO 46 B PRO 46 -0.09 A GLY 45 B GLY 45 6 A PRO 46 B PRO 46 -0.02 A GLY 45 B GLY 45 7 A PRO 46 B PRO 46 0.01 A GLY 45 B GLY 45 8 A PRO 46 B PRO 46 0.02 A GLY 45 B GLY 45 9 A PRO 46 B PRO 46 0.01 A GLY 45 B GLY 45 10 A PRO 46 B PRO 46 -0.12 A GLY 45 B GLY 45 11 A PRO 46 B PRO 46 -0.09 A GLY 45 B GLY 45 12 A PRO 46 B PRO 46 0.09 A GLY 45 B GLY 45 13 A PRO 46 B PRO 46 -0.01 A GLY 45 B GLY 45 14 A PRO 46 B PRO 46 -0.06 A GLY 45 B GLY 45 15 A PRO 46 B PRO 46 0.02 A GLY 45 B GLY 45 16 A PRO 46 B PRO 46 0.08 A GLY 45 B GLY 45 17 A PRO 46 B PRO 46 -0.06 A GLY 45 B GLY 45 18 A PRO 46 B PRO 46 0.00 A GLY 45 B GLY 45 19 A PRO 46 B PRO 46 -0.04 A GLY 45 B GLY 45 20 A PRO 46 B PRO 46 -0.08 GAG_MLVMO UNP 2 479 P03332 ATVVSGQKQDRQGGERRRSQLDRDQCAYCKEKGHWAKDCPKKPRGPRGPRPQTSLL 1WWD PDB 1 1WWD 479 534 1WWD 1 56 P03332 A 1 1 56 493 498 1WWD 493 498 1WWD B 2 1 6 BINDING SITE FOR RESIDUE ZN A 57 A ZN 57 Software 4 A CYS 26 B CYS 26 4 1_555 A CYS 29 B CYS 29 4 1_555 A HIS 34 B HIS 34 4 1_555 A CYS 39 B CYS 39 4 1_555