1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Tomizawa, T. Kigawa, T. Koshiba, S. Inoue, M. Yokoyama, S. RIKEN Structural Genomics/Proteomics Initiative (RSGI) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking To be Published 0353 Solution structure of the CH domain of human NEDD9 interacting protein with calponin homology and LIM domains 10.2210/pdb1wyl/pdb pdb_00001wyl 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 11932.241 NEDD9 interacting protein with calponin homology and LIM domains CH domain 1 man polymer Molecule interacting with CasL protein 1 no no GSSGSSGTQEELLRWCQEQTAGYPGVHVSDLSSSWADGLALCALVYRLQPGLLEPSELQGLGALEATAWALKVAENELGI TPVVSAQAVVAGSDPLGLIAYLSHFHSAFKSGPSSG GSSGSSGTQEELLRWCQEQTAGYPGVHVSDLSSSWADGLALCALVYRLQPGLLEPSELQGLGALEATAWALKVAENELGI TPVVSAQAVVAGSDPLGLIAYLSHFHSAFKSGPSSG A hss001000142 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo sample Cell-free protein synthesis NICAL 9606 Homo sapiens PLASMID P040315-92 RIKEN Structural Genomics/Proteomics Initiative RSGI NPPSFA, National Project on Protein Structural and Functional Analyses database_2 pdbx_nmr_software pdbx_nmr_spectrometer pdbx_struct_assembly pdbx_struct_oper_list struct_ref_seq_dif repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2005-08-15 1 1 2008-04-30 1 2 2011-07-13 1 3 2022-03-02 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _pdbx_nmr_spectrometer.model _struct_ref_seq_dif.details Y PDBJ Y PDBJ 2005-02-15 REL REL target function,structures with the lowest energy,structures with the least restraint violations 100 20 3D_15N-separated_NOESY 3D_13C-separated_NOESY 120mM 7.0 ambient 296 K torsion angle dynamics, restrainted molecular dynamics 1 lowest energy 1.22mM CH domain U-15N, 13C; 20mM d-Tris-HCl; 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 10% D2O 90% H2O/10% D2O Bruker collection XwinNMR 2.6 Delaglio, F. processing NMRPipe 20030801 Johnson, B.A. data analysis NMRView 5.0.4 Kobayashi, N. data analysis KUJIRA 0.9295 Guentert, P. structure solution CYANA 2.0.17 Guentert, P. refinement CYANA 2.0.17 800 Bruker AVANCE GLY 1 n 1 GLY 1 A SER 2 n 2 SER 2 A SER 3 n 3 SER 3 A GLY 4 n 4 GLY 4 A SER 5 n 5 SER 5 A SER 6 n 6 SER 6 A GLY 7 n 7 GLY 7 A THR 8 n 8 THR 8 A GLN 9 n 9 GLN 9 A GLU 10 n 10 GLU 10 A GLU 11 n 11 GLU 11 A LEU 12 n 12 LEU 12 A LEU 13 n 13 LEU 13 A ARG 14 n 14 ARG 14 A TRP 15 n 15 TRP 15 A CYS 16 n 16 CYS 16 A GLN 17 n 17 GLN 17 A GLU 18 n 18 GLU 18 A GLN 19 n 19 GLN 19 A THR 20 n 20 THR 20 A ALA 21 n 21 ALA 21 A GLY 22 n 22 GLY 22 A TYR 23 n 23 TYR 23 A PRO 24 n 24 PRO 24 A GLY 25 n 25 GLY 25 A VAL 26 n 26 VAL 26 A HIS 27 n 27 HIS 27 A VAL 28 n 28 VAL 28 A SER 29 n 29 SER 29 A ASP 30 n 30 ASP 30 A LEU 31 n 31 LEU 31 A SER 32 n 32 SER 32 A SER 33 n 33 SER 33 A SER 34 n 34 SER 34 A TRP 35 n 35 TRP 35 A ALA 36 n 36 ALA 36 A ASP 37 n 37 ASP 37 A GLY 38 n 38 GLY 38 A LEU 39 n 39 LEU 39 A ALA 40 n 40 ALA 40 A LEU 41 n 41 LEU 41 A CYS 42 n 42 CYS 42 A ALA 43 n 43 ALA 43 A LEU 44 n 44 LEU 44 A VAL 45 n 45 VAL 45 A TYR 46 n 46 TYR 46 A ARG 47 n 47 ARG 47 A LEU 48 n 48 LEU 48 A GLN 49 n 49 GLN 49 A PRO 50 n 50 PRO 50 A GLY 51 n 51 GLY 51 A LEU 52 n 52 LEU 52 A LEU 53 n 53 LEU 53 A GLU 54 n 54 GLU 54 A PRO 55 n 55 PRO 55 A SER 56 n 56 SER 56 A GLU 57 n 57 GLU 57 A LEU 58 n 58 LEU 58 A GLN 59 n 59 GLN 59 A GLY 60 n 60 GLY 60 A LEU 61 n 61 LEU 61 A GLY 62 n 62 GLY 62 A ALA 63 n 63 ALA 63 A LEU 64 n 64 LEU 64 A GLU 65 n 65 GLU 65 A ALA 66 n 66 ALA 66 A THR 67 n 67 THR 67 A ALA 68 n 68 ALA 68 A TRP 69 n 69 TRP 69 A ALA 70 n 70 ALA 70 A LEU 71 n 71 LEU 71 A LYS 72 n 72 LYS 72 A VAL 73 n 73 VAL 73 A ALA 74 n 74 ALA 74 A GLU 75 n 75 GLU 75 A ASN 76 n 76 ASN 76 A GLU 77 n 77 GLU 77 A LEU 78 n 78 LEU 78 A GLY 79 n 79 GLY 79 A ILE 80 n 80 ILE 80 A THR 81 n 81 THR 81 A PRO 82 n 82 PRO 82 A VAL 83 n 83 VAL 83 A VAL 84 n 84 VAL 84 A SER 85 n 85 SER 85 A ALA 86 n 86 ALA 86 A GLN 87 n 87 GLN 87 A ALA 88 n 88 ALA 88 A VAL 89 n 89 VAL 89 A VAL 90 n 90 VAL 90 A ALA 91 n 91 ALA 91 A GLY 92 n 92 GLY 92 A SER 93 n 93 SER 93 A ASP 94 n 94 ASP 94 A PRO 95 n 95 PRO 95 A LEU 96 n 96 LEU 96 A GLY 97 n 97 GLY 97 A LEU 98 n 98 LEU 98 A ILE 99 n 99 ILE 99 A ALA 100 n 100 ALA 100 A TYR 101 n 101 TYR 101 A LEU 102 n 102 LEU 102 A SER 103 n 103 SER 103 A HIS 104 n 104 HIS 104 A PHE 105 n 105 PHE 105 A HIS 106 n 106 HIS 106 A SER 107 n 107 SER 107 A ALA 108 n 108 ALA 108 A PHE 109 n 109 PHE 109 A LYS 110 n 110 LYS 110 A SER 111 n 111 SER 111 A GLY 112 n 112 GLY 112 A PRO 113 n 113 PRO 113 A SER 114 n 114 SER 114 A SER 115 n 115 SER 115 A GLY 116 n 116 GLY 116 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A SER 6 34.75 49.80 1 A SER 32 -129.13 -59.28 1 A LEU 48 -34.09 -39.94 1 A LEU 53 -44.69 168.53 1 A PRO 55 -69.81 81.18 1 A ALA 63 -36.33 -39.18 1 A ALA 66 -62.36 -70.54 1 A LYS 72 -73.89 -70.32 1 A ASN 76 -96.53 -63.81 1 A GLU 77 -73.71 -70.91 1 A PRO 82 -69.79 93.54 1 A ALA 86 -33.93 -35.20 1 A PHE 109 -108.75 45.39 2 A SER 2 -43.86 99.61 2 A ALA 21 -41.53 150.98 2 A LEU 48 -37.96 -35.68 2 A LEU 53 -53.98 179.88 2 A PRO 55 -69.77 6.63 2 A SER 56 -31.14 -38.32 2 A GLU 65 -39.41 -36.21 2 A ASN 76 -91.86 -62.10 2 A GLU 77 -76.11 -72.27 2 A ILE 80 -67.14 87.95 2 A PRO 82 -69.65 93.90 2 A ALA 91 -36.52 -35.68 2 A SER 107 -36.26 -30.80 2 A PHE 109 -99.80 35.18 3 A VAL 26 -58.51 108.39 3 A SER 32 -105.42 -70.98 3 A ALA 36 -83.85 33.08 3 A LEU 48 -39.12 -38.45 3 A LEU 53 -48.47 178.30 3 A PRO 55 -69.80 5.02 3 A SER 56 -35.27 -31.04 3 A LEU 61 -114.29 -72.58 3 A GLU 77 -80.48 -71.99 3 A PRO 82 -69.74 87.14 3 A SER 107 -36.57 -32.46 3 A PHE 109 -106.17 47.73 4 A SER 3 -43.67 106.80 4 A VAL 26 -52.70 108.75 4 A VAL 28 -62.50 99.01 4 A SER 32 -109.50 -72.04 4 A LEU 53 -50.35 -177.17 4 A PRO 55 -69.87 4.91 4 A SER 56 -32.86 -35.35 4 A LEU 61 -116.38 -71.26 4 A ALA 66 -62.09 -71.88 4 A THR 67 -36.75 -37.08 4 A LYS 72 -73.79 -70.15 4 A ASN 76 -97.34 -64.03 4 A PRO 82 -69.71 98.23 4 A SER 107 -34.49 -39.00 4 A PHE 109 -93.35 41.15 5 A SER 2 70.36 41.88 5 A VAL 28 -53.44 99.62 5 A SER 32 -127.49 -65.82 5 A LEU 53 -50.41 -179.84 5 A PRO 55 -69.84 4.70 5 A SER 56 -33.75 -33.91 5 A LEU 61 -44.54 159.48 5 A THR 67 -38.39 -39.30 5 A ILE 80 -65.52 92.86 5 A PRO 82 -69.76 94.25 5 A ALA 91 -39.76 -39.25 5 A SER 107 -36.25 -36.39 5 A PHE 109 -96.64 40.02 6 A GLN 9 -37.06 -39.16 6 A TYR 23 -36.43 127.69 6 A LEU 31 -83.61 34.66 6 A SER 32 -115.35 -72.41 6 A LEU 48 -35.65 -37.55 6 A LEU 53 -49.73 -179.04 6 A PRO 55 -69.79 4.93 6 A SER 56 -32.52 -35.94 6 A LEU 61 -38.21 154.78 6 A THR 81 -37.41 134.32 6 A PRO 82 -69.81 92.27 6 A SER 107 -34.77 -35.04 6 A PHE 109 -93.88 40.09 7 A LEU 31 -106.01 56.56 7 A SER 32 -129.17 -70.94 7 A LEU 48 -36.93 -38.62 7 A LEU 53 -48.09 177.19 7 A PRO 55 -69.81 7.08 7 A SER 56 -30.35 -39.29 7 A GLN 59 -62.65 80.12 7 A LEU 61 -50.44 171.23 7 A GLU 65 -39.62 -33.46 7 A LYS 72 -76.16 -70.18 7 A THR 81 -37.78 133.70 7 A PRO 82 -69.78 97.10 7 A PHE 109 -103.82 42.04 7 A SER 111 37.38 41.91 7 A SER 115 -49.96 100.75 8 A ALA 21 -39.24 148.24 8 A VAL 28 -56.68 101.48 8 A SER 32 -130.07 -58.55 8 A LEU 53 -50.42 177.33 8 A PRO 55 -69.83 98.84 8 A LEU 61 -39.69 160.62 8 A ALA 66 -67.80 -70.85 8 A THR 67 -38.45 -35.12 8 A ASN 76 -94.54 -64.36 8 A ALA 86 -37.67 -30.86 8 A LYS 110 -106.60 58.52 8 A PRO 113 -69.74 93.99 8 A SER 114 -55.81 103.72 9 A VAL 28 -56.52 80.71 9 A LEU 31 -95.74 36.93 9 A SER 32 -109.94 -72.10 9 A ALA 36 -83.98 41.83 9 A ASP 37 -131.25 -32.25 9 A LEU 53 -50.68 179.51 9 A PRO 55 -69.77 8.32 9 A SER 56 -31.87 -36.77 9 A ASN 76 -92.12 -63.26 9 A THR 81 -36.01 135.14 9 A ALA 91 -48.12 -19.13 10 A GLN 9 -36.65 -33.72 10 A SER 32 -115.30 -73.59 10 A ASP 37 -36.18 -36.16 10 A LEU 53 -46.36 174.16 10 A PRO 55 -69.72 8.37 10 A SER 56 -32.47 -35.76 10 A GLU 65 -37.70 -34.88 10 A GLU 77 -76.95 -72.19 10 A THR 81 -36.65 130.08 10 A PRO 82 -69.78 99.52 10 A LYS 110 -112.22 67.77 10 A SER 111 -103.18 -64.77 10 A PRO 113 -69.73 94.02 11 A ALA 21 -35.82 136.28 11 A PRO 24 -69.69 98.97 11 A VAL 28 -65.11 93.87 11 A LEU 31 -83.96 34.18 11 A SER 32 -94.67 -75.38 11 A ALA 36 -79.73 42.70 11 A LEU 53 -47.64 176.31 11 A PRO 55 -69.72 7.60 11 A SER 56 -33.27 -34.76 11 A GLU 77 -77.01 -73.14 11 A PRO 82 -69.78 94.13 11 A SER 107 -34.85 -34.67 11 A PHE 109 -96.08 43.17 11 A PRO 113 -69.86 -178.73 12 A SER 3 -46.40 104.21 12 A SER 5 -83.69 44.66 12 A ALA 21 -57.50 172.72 12 A LEU 53 -45.68 171.99 12 A PRO 55 -69.78 8.86 12 A SER 56 -32.13 -36.43 12 A GLU 65 -39.81 -37.09 12 A GLU 77 -93.03 -70.19 12 A ILE 80 -59.24 88.34 12 A SER 107 -34.45 -35.17 12 A PHE 109 -96.65 42.60 13 A THR 8 -48.66 161.02 13 A SER 32 -100.55 -70.72 13 A LEU 53 -49.25 -179.99 13 A PRO 55 -69.70 7.32 13 A SER 56 -32.31 -36.20 13 A GLU 65 -39.51 -31.98 13 A ALA 66 -69.36 -70.91 13 A ASN 76 -93.98 -65.86 13 A ALA 86 -34.51 -33.82 13 A ALA 91 -49.69 -18.04 13 A SER 107 -35.25 -34.12 13 A PHE 109 -87.36 39.11 13 A SER 111 38.59 37.19 13 A PRO 113 -69.74 97.28 14 A GLN 9 -88.95 42.37 14 A LEU 13 -55.24 -74.22 14 A ALA 21 -37.39 143.67 14 A SER 32 -100.49 -63.29 14 A LEU 53 -44.89 169.74 14 A PRO 55 -69.80 89.05 14 A ALA 63 -38.80 -29.91 14 A ALA 66 -60.22 -71.27 14 A THR 67 -38.71 -36.23 14 A ASN 76 -94.56 -63.40 14 A THR 81 -33.74 131.47 14 A PRO 82 -69.75 95.15 14 A ALA 86 -37.64 -39.96 14 A SER 107 -38.17 -29.25 14 A PHE 109 -109.37 40.68 15 A THR 8 -42.49 158.26 15 A TYR 23 -38.80 121.62 15 A VAL 26 -59.37 101.76 15 A LEU 31 -117.40 52.17 15 A SER 32 -130.14 -63.67 15 A ASP 37 -35.95 -38.12 15 A LEU 53 -53.69 172.77 15 A PRO 55 -69.69 5.77 15 A SER 56 -33.37 -34.28 15 A LEU 61 -111.96 -71.78 15 A LYS 72 -76.72 -70.17 15 A THR 81 -38.10 125.33 15 A ALA 86 -33.94 -39.87 16 A LEU 31 -80.29 38.49 16 A SER 33 -131.58 -38.09 16 A ASP 37 -34.31 -36.38 16 A LEU 48 -34.51 -37.11 16 A LEU 53 -48.72 178.60 16 A PRO 55 -69.72 7.72 16 A SER 56 -31.58 -37.10 16 A GLN 59 -37.66 -36.69 16 A LEU 61 -37.77 154.52 16 A LYS 72 -76.77 -70.05 16 A ASN 76 -103.27 -64.21 16 A PRO 82 -69.76 94.55 16 A ALA 86 -34.94 -35.72 16 A ALA 91 -47.09 -19.90 16 A SER 107 -37.97 -32.12 17 A PRO 24 -69.75 99.37 17 A SER 32 -105.38 -71.25 17 A ALA 36 -80.35 42.45 17 A LEU 48 -38.54 -37.78 17 A LEU 53 -43.86 169.11 17 A PRO 55 -69.81 5.38 17 A SER 56 -31.99 -36.64 17 A GLU 65 -39.12 -36.18 17 A ASN 76 -94.97 -63.82 17 A PRO 82 -69.72 98.02 17 A SER 107 -37.63 -28.17 17 A PHE 109 -109.46 43.95 18 A LEU 31 -113.06 51.69 18 A SER 32 -133.65 -58.03 18 A LEU 48 -39.41 -37.12 18 A LEU 53 -43.60 161.55 18 A PRO 55 -69.71 8.42 18 A SER 56 -32.76 -35.21 18 A LYS 72 -72.55 -70.29 18 A ASN 76 -90.84 -65.05 18 A ILE 80 -59.25 83.48 18 A PRO 113 -69.75 -177.67 19 A SER 2 -45.06 103.96 19 A THR 8 -52.39 175.29 19 A LEU 31 -90.21 34.14 19 A SER 32 -108.69 -64.80 19 A LEU 53 -48.57 178.32 19 A PRO 55 -69.76 7.97 19 A SER 56 -32.04 -36.47 19 A LYS 72 -78.80 -70.42 19 A ASN 76 -98.01 -62.02 19 A GLU 77 -72.97 -70.15 19 A PRO 82 -69.78 95.22 19 A SER 107 -37.92 -27.86 19 A SER 114 -43.70 159.18 20 A LEU 31 -114.23 50.61 20 A SER 32 -130.00 -68.04 20 A LEU 53 -47.85 176.84 20 A PRO 55 -69.78 9.36 20 A SER 56 -31.81 -36.81 20 A GLU 77 -82.99 -73.45 20 A ILE 80 -69.23 90.00 20 A PRO 82 -69.74 97.46 20 A SER 107 -38.46 -34.26 20 A PHE 109 -107.92 48.41 20 A PRO 113 -69.81 82.80 20 A SER 115 -170.52 134.87 Solution structure of the CH domain of human NEDD9 interacting protein with calponin homology and LIM domains 1 N N A THR 8 A THR 8 HELX_P A TYR 23 A TYR 23 1 1 16 A GLY 38 A GLY 38 HELX_P A GLN 49 A GLN 49 1 2 12 A GLU 57 A GLU 57 HELX_P A LEU 61 A LEU 61 5 3 5 A GLY 62 A GLY 62 HELX_P A GLU 77 A GLU 77 1 4 16 A SER 85 A SER 85 HELX_P A GLY 92 A GLY 92 1 5 8 A ASP 94 A ASP 94 HELX_P A PHE 109 A PHE 109 1 6 16 SIGNALING PROTEIN CH domain, MICAL, NEDD9, structural genomics, RIKEN Structural Genomics/Proteomics Initiative, RSGI, NPPSFA, National Project on Protein Structural and Functional Analyses, SIGNALING PROTEIN MICA1_HUMAN UNP 1 510 Q8TDZ2 TQEELLRWCQEQTAGYPGVHVSDLSSSWADGLALCALVYRLQPGLLEPSELQGLGALEATAWALKVAENELGITPVVSAQ AVVAGSDPLGLIAYLSHFHSAFK 510 612 1WYL 8 110 Q8TDZ2 A 1 8 110 1 cloning artifact GLY 1 1WYL A Q8TDZ2 UNP 1 1 cloning artifact SER 2 1WYL A Q8TDZ2 UNP 2 1 cloning artifact SER 3 1WYL A Q8TDZ2 UNP 3 1 cloning artifact GLY 4 1WYL A Q8TDZ2 UNP 4 1 cloning artifact SER 5 1WYL A Q8TDZ2 UNP 5 1 cloning artifact SER 6 1WYL A Q8TDZ2 UNP 6 1 cloning artifact GLY 7 1WYL A Q8TDZ2 UNP 7 1 cloning artifact SER 111 1WYL A Q8TDZ2 UNP 111 1 cloning artifact GLY 112 1WYL A Q8TDZ2 UNP 112 1 cloning artifact PRO 113 1WYL A Q8TDZ2 UNP 113 1 cloning artifact SER 114 1WYL A Q8TDZ2 UNP 114 1 cloning artifact SER 115 1WYL A Q8TDZ2 UNP 115 1 cloning artifact GLY 116 1WYL A Q8TDZ2 UNP 116