1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Yoneyama, M. Tomizawa, T. Tochio, N. Koshiba, S. Inoue, M. Kigawa, T. Yokoyama, S. RIKEN Structural Genomics/Proteomics Initiative (RSGI) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer To be Published 0353 Solution structure of the C2H2 type zinc-binding domain of human zinc finger protein 292 10.2210/pdb1x3c/pdb pdb_00001x3c 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 8014.847 Zinc finger protein 292 C2H2 type zinc-binding domain 1 man polymer 65.409 ZINC ION 1 syn non-polymer no no GSSGSSGRKKPVSQSLEFPTRYSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAEVEEESGPSSG GSSGSSGRKKPVSQSLEFPTRYSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAEVEEESGPSSG A hsk002000517.1 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo sample Cell-free protein synthesis ZNF292 9606 Homo sapiens plasmid P041018-02 RIKEN Structural Genomics/Proteomics Initiative RSGI NPPSFA, National Project on Protein Structural and Functional Analyses database_2 pdbx_nmr_software pdbx_nmr_spectrometer pdbx_struct_assembly pdbx_struct_oper_list struct_conn struct_ref_seq_dif struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2005-11-02 1 1 2008-04-30 1 2 2011-07-13 1 3 2022-03-02 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _pdbx_nmr_spectrometer.model _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id SHEET DETERMINATION METHOD: AUTHOR DETERMINED Y PDBJ Y PDBJ 2005-05-02 REL ZN ZINC ION target function,structures with the least restraint violations 100 20 3D_15N-separated_NOESY 3D_13C-separated_NOESY 120 7.0 ambient 296 K torsion angle dynamics 1 lowest energy 1.90mM C2H2 type zinc-binding domain U-15N, 13C; 20mM d-Tris-HCl (pH7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 0.05mM ZnCl2; 0.1mM NTA; 10% D2O 90% H2O/10% D2O Bruker collection XwinNMR 2.6 Delaglio, F. processing NMRPipe 20031121 Johnson, B. A. data analysis NMRView 5.0.4 Kobayashi, N. data analysis KUJIRA 0.9295 Guentert, P. structure solution CYANA 2.0.17 Guentert, P. refinement CYANA 2.0.17 800 Bruker AVANCE ZN 201 2 ZN ZN 201 A GLY 1 n 1 GLY 1 A SER 2 n 2 SER 2 A SER 3 n 3 SER 3 A GLY 4 n 4 GLY 4 A SER 5 n 5 SER 5 A SER 6 n 6 SER 6 A GLY 7 n 7 GLY 7 A ARG 8 n 8 ARG 8 A LYS 9 n 9 LYS 9 A LYS 10 n 10 LYS 10 A PRO 11 n 11 PRO 11 A VAL 12 n 12 VAL 12 A SER 13 n 13 SER 13 A GLN 14 n 14 GLN 14 A SER 15 n 15 SER 15 A LEU 16 n 16 LEU 16 A GLU 17 n 17 GLU 17 A PHE 18 n 18 PHE 18 A PRO 19 n 19 PRO 19 A THR 20 n 20 THR 20 A ARG 21 n 21 ARG 21 A TYR 22 n 22 TYR 22 A SER 23 n 23 SER 23 A PRO 24 n 24 PRO 24 A TYR 25 n 25 TYR 25 A ARG 26 n 26 ARG 26 A PRO 27 n 27 PRO 27 A TYR 28 n 28 TYR 28 A ARG 29 n 29 ARG 29 A CYS 30 n 30 CYS 30 A VAL 31 n 31 VAL 31 A HIS 32 n 32 HIS 32 A GLN 33 n 33 GLN 33 A GLY 34 n 34 GLY 34 A CYS 35 n 35 CYS 35 A PHE 36 n 36 PHE 36 A ALA 37 n 37 ALA 37 A ALA 38 n 38 ALA 38 A PHE 39 n 39 PHE 39 A THR 40 n 40 THR 40 A ILE 41 n 41 ILE 41 A GLN 42 n 42 GLN 42 A GLN 43 n 43 GLN 43 A ASN 44 n 44 ASN 44 A LEU 45 n 45 LEU 45 A ILE 46 n 46 ILE 46 A LEU 47 n 47 LEU 47 A HIS 48 n 48 HIS 48 A TYR 49 n 49 TYR 49 A GLN 50 n 50 GLN 50 A ALA 51 n 51 ALA 51 A VAL 52 n 52 VAL 52 A HIS 53 n 53 HIS 53 A LYS 54 n 54 LYS 54 A SER 55 n 55 SER 55 A ASP 56 n 56 ASP 56 A LEU 57 n 57 LEU 57 A PRO 58 n 58 PRO 58 A ALA 59 n 59 ALA 59 A PHE 60 n 60 PHE 60 A SER 61 n 61 SER 61 A ALA 62 n 62 ALA 62 A GLU 63 n 63 GLU 63 A VAL 64 n 64 VAL 64 A GLU 65 n 65 GLU 65 A GLU 66 n 66 GLU 66 A GLU 67 n 67 GLU 67 A SER 68 n 68 SER 68 A GLY 69 n 69 GLY 69 A PRO 70 n 70 PRO 70 A SER 71 n 71 SER 71 A SER 72 n 72 SER 72 A GLY 73 n 73 GLY 73 A author_defined_assembly 1 monomeric A CYS 30 A SG CYS 30 1_555 A ZN 201 B ZN ZN 1_555 A CYS 35 A SG CYS 35 1_555 109.4 A CYS 30 A SG CYS 30 1_555 A ZN 201 B ZN ZN 1_555 A HIS 48 A NE2 HIS 48 1_555 90.8 A CYS 35 A SG CYS 35 1_555 A ZN 201 B ZN ZN 1_555 A HIS 48 A NE2 HIS 48 1_555 116.8 A CYS 30 A SG CYS 30 1_555 A ZN 201 B ZN ZN 1_555 A HIS 53 A NE2 HIS 53 1_555 117.9 A CYS 35 A SG CYS 35 1_555 A ZN 201 B ZN ZN 1_555 A HIS 53 A NE2 HIS 53 1_555 104.2 A HIS 48 A NE2 HIS 48 1_555 A ZN 201 B ZN ZN 1_555 A HIS 53 A NE2 HIS 53 1_555 117.8 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O TYR 28 A O TYR 28 A N CYS 30 A N CYS 30 1 A LYS 9 -161.43 108.25 1 A PHE 18 -34.49 130.57 1 A HIS 32 -37.41 115.77 1 A GLN 33 -60.61 91.40 1 A LYS 54 33.87 52.35 1 A LEU 57 -47.46 154.03 1 A PRO 58 -69.75 -172.25 1 A GLU 63 -57.83 85.19 1 A GLU 67 -108.28 -64.01 1 A SER 68 37.92 40.31 1 A PRO 70 -69.78 87.54 2 A SER 2 -172.93 144.77 2 A PRO 11 -69.81 -177.04 2 A VAL 12 -167.17 119.77 2 A GLU 17 -34.77 -39.10 2 A HIS 32 -59.80 94.25 2 A GLN 33 -53.80 85.48 2 A LYS 54 32.71 41.36 2 A ALA 62 -41.97 163.90 2 A GLU 63 -80.83 45.75 2 A VAL 64 -34.69 125.92 2 A SER 71 -43.55 165.76 3 A GLN 14 -172.75 122.80 3 A CYS 30 -37.38 152.73 3 A HIS 32 -61.20 90.02 3 A CYS 35 -130.40 -43.81 3 A LYS 54 35.47 36.20 3 A SER 61 -99.28 45.05 3 A GLU 65 32.41 41.53 4 A VAL 12 -175.01 132.70 4 A SER 15 -48.75 171.14 4 A PRO 19 -69.71 3.51 4 A HIS 32 -39.67 157.21 4 A LYS 54 33.88 37.47 4 A GLU 63 -85.62 44.43 4 A GLU 65 -56.91 104.12 4 A GLU 67 -175.05 130.62 4 A PRO 70 -69.73 -175.26 4 A SER 72 -69.43 93.25 5 A PRO 11 -69.77 81.14 5 A GLN 14 -44.12 168.71 5 A THR 20 -134.85 -52.88 5 A ARG 21 -172.86 -176.81 5 A TYR 22 -43.35 167.88 5 A CYS 35 -51.07 107.95 5 A PHE 36 -81.39 43.41 5 A ALA 38 -174.24 125.15 5 A LYS 54 31.55 40.66 5 A ALA 62 -49.19 174.13 5 A VAL 64 -81.32 40.52 5 A GLU 65 -102.46 79.08 5 A GLU 66 -49.42 157.05 5 A SER 72 -34.91 115.47 6 A SER 3 -132.80 -58.03 6 A SER 13 -53.18 96.83 6 A SER 15 -47.56 163.13 6 A PRO 27 -69.72 0.01 6 A HIS 32 -40.55 158.92 6 A ALA 59 -175.45 134.70 6 A PHE 60 -171.53 135.97 6 A GLU 66 30.07 43.68 7 A SER 2 -173.50 143.24 7 A THR 20 -174.76 125.70 7 A LYS 54 34.30 49.69 7 A ALA 59 -105.17 44.61 7 A PHE 60 -125.45 -63.27 7 A ALA 62 -58.48 -174.68 7 A GLU 63 -63.24 98.36 7 A GLU 66 -84.50 43.57 7 A GLU 67 36.89 40.93 7 A SER 68 -44.11 102.94 7 A PRO 70 -69.72 -174.76 8 A PHE 18 -40.74 106.13 8 A ARG 21 -92.06 34.60 8 A GLN 33 -62.66 88.87 8 A LYS 54 29.49 49.75 8 A PRO 58 -69.79 -166.47 8 A PHE 60 -125.04 -57.08 8 A GLU 63 37.06 41.56 9 A SER 6 -164.78 112.90 9 A LYS 9 -170.05 112.17 9 A LEU 16 -45.19 161.08 9 A PHE 36 -118.76 76.43 9 A LYS 54 31.77 44.06 9 A ALA 62 -173.96 -178.54 9 A GLU 66 -55.20 100.91 9 A SER 68 -34.65 101.59 10 A GLU 17 -38.51 -34.41 10 A HIS 32 -38.85 149.87 10 A ALA 38 -170.35 133.18 10 A LYS 54 32.79 42.28 10 A ALA 59 -37.13 120.23 10 A SER 61 34.28 53.66 10 A GLU 63 -102.39 43.41 10 A PRO 70 -69.71 -172.21 11 A PRO 19 -69.80 80.05 11 A CYS 30 -34.34 136.69 11 A HIS 32 -39.39 137.22 11 A LYS 54 31.71 41.40 11 A SER 61 38.02 40.70 11 A ALA 62 -62.24 -179.17 11 A SER 68 39.11 39.56 11 A SER 72 -164.19 112.72 12 A PRO 11 -69.77 -172.89 12 A VAL 12 -173.63 131.69 12 A GLU 17 -39.64 -31.69 12 A PRO 19 -69.77 2.91 12 A PRO 24 -69.76 1.60 12 A PHE 36 -114.66 76.08 12 A LYS 54 33.35 43.37 12 A PRO 58 -69.64 -177.23 12 A ALA 62 -122.76 -75.96 12 A GLU 63 -104.00 71.46 13 A PRO 11 -69.80 88.04 13 A GLN 14 -104.16 43.96 13 A CYS 30 -42.47 153.99 13 A HIS 32 -33.37 147.75 13 A ALA 38 -168.25 112.21 13 A LYS 54 25.72 48.93 13 A SER 55 -122.46 -73.76 13 A ASP 56 -177.13 -175.04 13 A GLU 65 33.79 42.26 14 A THR 20 -170.47 146.92 14 A HIS 32 -45.59 99.00 14 A CYS 35 -48.22 101.86 14 A LYS 54 30.39 39.23 14 A ALA 59 -40.21 96.15 14 A PHE 60 -34.35 125.93 14 A SER 68 -64.29 85.98 15 A ARG 8 -173.79 146.16 15 A VAL 12 -97.59 55.22 15 A SER 13 36.22 51.43 15 A SER 15 -92.57 -75.28 15 A THR 20 -175.58 -175.24 15 A TYR 22 -28.39 125.46 15 A SER 23 -51.42 106.99 15 A PRO 27 -69.76 0.35 15 A LYS 54 27.85 47.92 15 A LEU 57 -39.38 161.05 15 A ALA 62 -111.97 -76.11 15 A GLU 65 -94.27 42.32 16 A TYR 25 -170.76 127.72 16 A HIS 32 -39.95 124.64 16 A LYS 54 28.61 44.68 16 A SER 61 -44.10 160.73 17 A SER 2 -171.17 145.53 17 A SER 23 -31.40 94.93 17 A TYR 25 -64.38 96.32 17 A CYS 35 -127.86 -56.65 17 A LYS 54 31.93 53.05 17 A PHE 60 -100.18 46.54 17 A SER 61 -170.68 118.32 17 A ALA 62 -63.86 -178.28 17 A GLU 66 -81.60 42.75 17 A PRO 70 -69.74 -178.82 18 A PRO 11 -69.78 -176.86 18 A VAL 12 -37.41 154.06 18 A GLN 14 33.00 51.15 18 A LEU 16 -48.36 161.73 18 A SER 23 -53.40 107.86 18 A PRO 24 -69.73 0.95 18 A CYS 30 -37.59 146.11 18 A HIS 32 -37.09 131.63 18 A LYS 54 34.09 40.31 18 A ALA 62 -52.34 -177.71 18 A GLU 65 -108.03 41.19 18 A GLU 67 -171.99 129.97 19 A SER 5 -173.92 148.10 19 A PRO 11 -69.80 -179.67 19 A PRO 19 -69.72 95.17 19 A ARG 21 41.61 24.95 19 A PRO 24 -69.80 -163.49 19 A CYS 30 -38.95 123.25 19 A CYS 35 -166.80 115.81 19 A PHE 36 -104.45 48.31 19 A LYS 54 32.34 52.43 19 A SER 61 36.00 50.20 19 A GLU 63 -83.13 40.32 19 A GLU 65 -36.50 100.25 19 A PRO 70 -69.78 -165.09 20 A LYS 10 -173.68 137.92 20 A PRO 11 -69.79 -172.57 20 A GLN 14 -174.53 117.94 20 A PRO 19 -69.74 -90.82 20 A ARG 21 -131.61 -60.41 20 A PRO 24 -69.73 2.35 20 A PRO 27 -69.80 3.28 20 A HIS 32 -47.19 95.26 20 A GLN 33 -49.29 105.56 20 A LYS 54 30.86 54.82 20 A ALA 59 -42.13 108.08 20 A SER 61 70.36 38.36 20 A ALA 62 -82.31 -77.23 20 A GLU 63 -35.13 94.24 20 A SER 68 -124.42 -57.92 Solution structure of the C2H2 type zinc-binding domain of human zinc finger protein 292 1 N N 2 N N A ILE 41 A ILE 41 HELX_P A HIS 53 A HIS 53 1 1 13 metalc 2.329 A CYS 30 A SG CYS 30 1_555 A ZN 201 B ZN ZN 1_555 metalc 2.366 A CYS 35 A SG CYS 35 1_555 A ZN 201 B ZN ZN 1_555 metalc 2.333 A HIS 48 A NE2 HIS 48 1_555 A ZN 201 B ZN ZN 1_555 metalc 2.339 A HIS 53 A NE2 HIS 53 1_555 A ZN 201 B ZN ZN 1_555 DNA BINDING PROTEIN DNA binding, Nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, DNA BINDING PROTEIN ZN292_HUMAN UNP 1 1340 O60281 RKKPVSQSLEFPTRYSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAEVEEE 1340 1399 1X3C 8 67 O60281 A 1 8 67 1 cloning artifact GLY 1 1X3C A O60281 UNP 1 1 cloning artifact SER 2 1X3C A O60281 UNP 2 1 cloning artifact SER 3 1X3C A O60281 UNP 3 1 cloning artifact GLY 4 1X3C A O60281 UNP 4 1 cloning artifact SER 5 1X3C A O60281 UNP 5 1 cloning artifact SER 6 1X3C A O60281 UNP 6 1 cloning artifact GLY 7 1X3C A O60281 UNP 7 1 cloning artifact SER 68 1X3C A O60281 UNP 68 1 cloning artifact GLY 69 1X3C A O60281 UNP 69 1 cloning artifact PRO 70 1X3C A O60281 UNP 70 1 cloning artifact SER 71 1X3C A O60281 UNP 71 1 cloning artifact SER 72 1X3C A O60281 UNP 72 1 cloning artifact GLY 73 1X3C A O60281 UNP 73 2 anti-parallel A TYR 28 A TYR 28 A CYS 30 A CYS 30 A ALA 37 A ALA 37 A PHE 39 A PHE 39 BINDING SITE FOR RESIDUE ZN A 201 A ZN 201 Software 4 A CYS 30 A CYS 30 4 1_555 A CYS 35 A CYS 35 4 1_555 A HIS 48 A HIS 48 4 1_555 A HIS 53 A HIS 53 4 1_555