1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Yoneyama, M.
Tomizawa, T.
Tochio, N.
Koshiba, S.
Inoue, M.
Kigawa, T.
Yokoyama, S.
RIKEN Structural Genomics/Proteomics Initiative (RSGI)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
To be Published
0353
Solution structure of the C2H2 type zinc-binding domain of human zinc finger protein 292
10.2210/pdb1x3c/pdb
pdb_00001x3c
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
8014.847
Zinc finger protein 292
C2H2 type zinc-binding domain
1
man
polymer
65.409
ZINC ION
1
syn
non-polymer
no
no
GSSGSSGRKKPVSQSLEFPTRYSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAEVEEESGPSSG
GSSGSSGRKKPVSQSLEFPTRYSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAEVEEESGPSSG
A
hsk002000517.1
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
sample
Cell-free protein synthesis
ZNF292
9606
Homo sapiens
plasmid
P041018-02
RIKEN Structural Genomics/Proteomics Initiative
RSGI
NPPSFA, National Project on Protein Structural and Functional Analyses
database_2
pdbx_nmr_software
pdbx_nmr_spectrometer
pdbx_struct_assembly
pdbx_struct_oper_list
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2005-11-02
1
1
2008-04-30
1
2
2011-07-13
1
3
2022-03-02
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_pdbx_nmr_spectrometer.model
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
SHEET
DETERMINATION METHOD: AUTHOR DETERMINED
Y
PDBJ
Y
PDBJ
2005-05-02
REL
ZN
ZINC ION
target function,structures with the least restraint violations
100
20
3D_15N-separated_NOESY
3D_13C-separated_NOESY
120
7.0
ambient
296
K
torsion angle dynamics
1
lowest energy
1.90mM C2H2 type zinc-binding domain U-15N, 13C; 20mM d-Tris-HCl (pH7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 0.05mM ZnCl2; 0.1mM NTA; 10% D2O
90% H2O/10% D2O
Bruker
collection
XwinNMR
2.6
Delaglio, F.
processing
NMRPipe
20031121
Johnson, B. A.
data analysis
NMRView
5.0.4
Kobayashi, N.
data analysis
KUJIRA
0.9295
Guentert, P.
structure solution
CYANA
2.0.17
Guentert, P.
refinement
CYANA
2.0.17
800
Bruker
AVANCE
ZN
201
2
ZN
ZN
201
A
GLY
1
n
1
GLY
1
A
SER
2
n
2
SER
2
A
SER
3
n
3
SER
3
A
GLY
4
n
4
GLY
4
A
SER
5
n
5
SER
5
A
SER
6
n
6
SER
6
A
GLY
7
n
7
GLY
7
A
ARG
8
n
8
ARG
8
A
LYS
9
n
9
LYS
9
A
LYS
10
n
10
LYS
10
A
PRO
11
n
11
PRO
11
A
VAL
12
n
12
VAL
12
A
SER
13
n
13
SER
13
A
GLN
14
n
14
GLN
14
A
SER
15
n
15
SER
15
A
LEU
16
n
16
LEU
16
A
GLU
17
n
17
GLU
17
A
PHE
18
n
18
PHE
18
A
PRO
19
n
19
PRO
19
A
THR
20
n
20
THR
20
A
ARG
21
n
21
ARG
21
A
TYR
22
n
22
TYR
22
A
SER
23
n
23
SER
23
A
PRO
24
n
24
PRO
24
A
TYR
25
n
25
TYR
25
A
ARG
26
n
26
ARG
26
A
PRO
27
n
27
PRO
27
A
TYR
28
n
28
TYR
28
A
ARG
29
n
29
ARG
29
A
CYS
30
n
30
CYS
30
A
VAL
31
n
31
VAL
31
A
HIS
32
n
32
HIS
32
A
GLN
33
n
33
GLN
33
A
GLY
34
n
34
GLY
34
A
CYS
35
n
35
CYS
35
A
PHE
36
n
36
PHE
36
A
ALA
37
n
37
ALA
37
A
ALA
38
n
38
ALA
38
A
PHE
39
n
39
PHE
39
A
THR
40
n
40
THR
40
A
ILE
41
n
41
ILE
41
A
GLN
42
n
42
GLN
42
A
GLN
43
n
43
GLN
43
A
ASN
44
n
44
ASN
44
A
LEU
45
n
45
LEU
45
A
ILE
46
n
46
ILE
46
A
LEU
47
n
47
LEU
47
A
HIS
48
n
48
HIS
48
A
TYR
49
n
49
TYR
49
A
GLN
50
n
50
GLN
50
A
ALA
51
n
51
ALA
51
A
VAL
52
n
52
VAL
52
A
HIS
53
n
53
HIS
53
A
LYS
54
n
54
LYS
54
A
SER
55
n
55
SER
55
A
ASP
56
n
56
ASP
56
A
LEU
57
n
57
LEU
57
A
PRO
58
n
58
PRO
58
A
ALA
59
n
59
ALA
59
A
PHE
60
n
60
PHE
60
A
SER
61
n
61
SER
61
A
ALA
62
n
62
ALA
62
A
GLU
63
n
63
GLU
63
A
VAL
64
n
64
VAL
64
A
GLU
65
n
65
GLU
65
A
GLU
66
n
66
GLU
66
A
GLU
67
n
67
GLU
67
A
SER
68
n
68
SER
68
A
GLY
69
n
69
GLY
69
A
PRO
70
n
70
PRO
70
A
SER
71
n
71
SER
71
A
SER
72
n
72
SER
72
A
GLY
73
n
73
GLY
73
A
author_defined_assembly
1
monomeric
A
CYS
30
A
SG
CYS
30
1_555
A
ZN
201
B
ZN
ZN
1_555
A
CYS
35
A
SG
CYS
35
1_555
109.4
A
CYS
30
A
SG
CYS
30
1_555
A
ZN
201
B
ZN
ZN
1_555
A
HIS
48
A
NE2
HIS
48
1_555
90.8
A
CYS
35
A
SG
CYS
35
1_555
A
ZN
201
B
ZN
ZN
1_555
A
HIS
48
A
NE2
HIS
48
1_555
116.8
A
CYS
30
A
SG
CYS
30
1_555
A
ZN
201
B
ZN
ZN
1_555
A
HIS
53
A
NE2
HIS
53
1_555
117.9
A
CYS
35
A
SG
CYS
35
1_555
A
ZN
201
B
ZN
ZN
1_555
A
HIS
53
A
NE2
HIS
53
1_555
104.2
A
HIS
48
A
NE2
HIS
48
1_555
A
ZN
201
B
ZN
ZN
1_555
A
HIS
53
A
NE2
HIS
53
1_555
117.8
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
TYR
28
A
O
TYR
28
A
N
CYS
30
A
N
CYS
30
1
A
LYS
9
-161.43
108.25
1
A
PHE
18
-34.49
130.57
1
A
HIS
32
-37.41
115.77
1
A
GLN
33
-60.61
91.40
1
A
LYS
54
33.87
52.35
1
A
LEU
57
-47.46
154.03
1
A
PRO
58
-69.75
-172.25
1
A
GLU
63
-57.83
85.19
1
A
GLU
67
-108.28
-64.01
1
A
SER
68
37.92
40.31
1
A
PRO
70
-69.78
87.54
2
A
SER
2
-172.93
144.77
2
A
PRO
11
-69.81
-177.04
2
A
VAL
12
-167.17
119.77
2
A
GLU
17
-34.77
-39.10
2
A
HIS
32
-59.80
94.25
2
A
GLN
33
-53.80
85.48
2
A
LYS
54
32.71
41.36
2
A
ALA
62
-41.97
163.90
2
A
GLU
63
-80.83
45.75
2
A
VAL
64
-34.69
125.92
2
A
SER
71
-43.55
165.76
3
A
GLN
14
-172.75
122.80
3
A
CYS
30
-37.38
152.73
3
A
HIS
32
-61.20
90.02
3
A
CYS
35
-130.40
-43.81
3
A
LYS
54
35.47
36.20
3
A
SER
61
-99.28
45.05
3
A
GLU
65
32.41
41.53
4
A
VAL
12
-175.01
132.70
4
A
SER
15
-48.75
171.14
4
A
PRO
19
-69.71
3.51
4
A
HIS
32
-39.67
157.21
4
A
LYS
54
33.88
37.47
4
A
GLU
63
-85.62
44.43
4
A
GLU
65
-56.91
104.12
4
A
GLU
67
-175.05
130.62
4
A
PRO
70
-69.73
-175.26
4
A
SER
72
-69.43
93.25
5
A
PRO
11
-69.77
81.14
5
A
GLN
14
-44.12
168.71
5
A
THR
20
-134.85
-52.88
5
A
ARG
21
-172.86
-176.81
5
A
TYR
22
-43.35
167.88
5
A
CYS
35
-51.07
107.95
5
A
PHE
36
-81.39
43.41
5
A
ALA
38
-174.24
125.15
5
A
LYS
54
31.55
40.66
5
A
ALA
62
-49.19
174.13
5
A
VAL
64
-81.32
40.52
5
A
GLU
65
-102.46
79.08
5
A
GLU
66
-49.42
157.05
5
A
SER
72
-34.91
115.47
6
A
SER
3
-132.80
-58.03
6
A
SER
13
-53.18
96.83
6
A
SER
15
-47.56
163.13
6
A
PRO
27
-69.72
0.01
6
A
HIS
32
-40.55
158.92
6
A
ALA
59
-175.45
134.70
6
A
PHE
60
-171.53
135.97
6
A
GLU
66
30.07
43.68
7
A
SER
2
-173.50
143.24
7
A
THR
20
-174.76
125.70
7
A
LYS
54
34.30
49.69
7
A
ALA
59
-105.17
44.61
7
A
PHE
60
-125.45
-63.27
7
A
ALA
62
-58.48
-174.68
7
A
GLU
63
-63.24
98.36
7
A
GLU
66
-84.50
43.57
7
A
GLU
67
36.89
40.93
7
A
SER
68
-44.11
102.94
7
A
PRO
70
-69.72
-174.76
8
A
PHE
18
-40.74
106.13
8
A
ARG
21
-92.06
34.60
8
A
GLN
33
-62.66
88.87
8
A
LYS
54
29.49
49.75
8
A
PRO
58
-69.79
-166.47
8
A
PHE
60
-125.04
-57.08
8
A
GLU
63
37.06
41.56
9
A
SER
6
-164.78
112.90
9
A
LYS
9
-170.05
112.17
9
A
LEU
16
-45.19
161.08
9
A
PHE
36
-118.76
76.43
9
A
LYS
54
31.77
44.06
9
A
ALA
62
-173.96
-178.54
9
A
GLU
66
-55.20
100.91
9
A
SER
68
-34.65
101.59
10
A
GLU
17
-38.51
-34.41
10
A
HIS
32
-38.85
149.87
10
A
ALA
38
-170.35
133.18
10
A
LYS
54
32.79
42.28
10
A
ALA
59
-37.13
120.23
10
A
SER
61
34.28
53.66
10
A
GLU
63
-102.39
43.41
10
A
PRO
70
-69.71
-172.21
11
A
PRO
19
-69.80
80.05
11
A
CYS
30
-34.34
136.69
11
A
HIS
32
-39.39
137.22
11
A
LYS
54
31.71
41.40
11
A
SER
61
38.02
40.70
11
A
ALA
62
-62.24
-179.17
11
A
SER
68
39.11
39.56
11
A
SER
72
-164.19
112.72
12
A
PRO
11
-69.77
-172.89
12
A
VAL
12
-173.63
131.69
12
A
GLU
17
-39.64
-31.69
12
A
PRO
19
-69.77
2.91
12
A
PRO
24
-69.76
1.60
12
A
PHE
36
-114.66
76.08
12
A
LYS
54
33.35
43.37
12
A
PRO
58
-69.64
-177.23
12
A
ALA
62
-122.76
-75.96
12
A
GLU
63
-104.00
71.46
13
A
PRO
11
-69.80
88.04
13
A
GLN
14
-104.16
43.96
13
A
CYS
30
-42.47
153.99
13
A
HIS
32
-33.37
147.75
13
A
ALA
38
-168.25
112.21
13
A
LYS
54
25.72
48.93
13
A
SER
55
-122.46
-73.76
13
A
ASP
56
-177.13
-175.04
13
A
GLU
65
33.79
42.26
14
A
THR
20
-170.47
146.92
14
A
HIS
32
-45.59
99.00
14
A
CYS
35
-48.22
101.86
14
A
LYS
54
30.39
39.23
14
A
ALA
59
-40.21
96.15
14
A
PHE
60
-34.35
125.93
14
A
SER
68
-64.29
85.98
15
A
ARG
8
-173.79
146.16
15
A
VAL
12
-97.59
55.22
15
A
SER
13
36.22
51.43
15
A
SER
15
-92.57
-75.28
15
A
THR
20
-175.58
-175.24
15
A
TYR
22
-28.39
125.46
15
A
SER
23
-51.42
106.99
15
A
PRO
27
-69.76
0.35
15
A
LYS
54
27.85
47.92
15
A
LEU
57
-39.38
161.05
15
A
ALA
62
-111.97
-76.11
15
A
GLU
65
-94.27
42.32
16
A
TYR
25
-170.76
127.72
16
A
HIS
32
-39.95
124.64
16
A
LYS
54
28.61
44.68
16
A
SER
61
-44.10
160.73
17
A
SER
2
-171.17
145.53
17
A
SER
23
-31.40
94.93
17
A
TYR
25
-64.38
96.32
17
A
CYS
35
-127.86
-56.65
17
A
LYS
54
31.93
53.05
17
A
PHE
60
-100.18
46.54
17
A
SER
61
-170.68
118.32
17
A
ALA
62
-63.86
-178.28
17
A
GLU
66
-81.60
42.75
17
A
PRO
70
-69.74
-178.82
18
A
PRO
11
-69.78
-176.86
18
A
VAL
12
-37.41
154.06
18
A
GLN
14
33.00
51.15
18
A
LEU
16
-48.36
161.73
18
A
SER
23
-53.40
107.86
18
A
PRO
24
-69.73
0.95
18
A
CYS
30
-37.59
146.11
18
A
HIS
32
-37.09
131.63
18
A
LYS
54
34.09
40.31
18
A
ALA
62
-52.34
-177.71
18
A
GLU
65
-108.03
41.19
18
A
GLU
67
-171.99
129.97
19
A
SER
5
-173.92
148.10
19
A
PRO
11
-69.80
-179.67
19
A
PRO
19
-69.72
95.17
19
A
ARG
21
41.61
24.95
19
A
PRO
24
-69.80
-163.49
19
A
CYS
30
-38.95
123.25
19
A
CYS
35
-166.80
115.81
19
A
PHE
36
-104.45
48.31
19
A
LYS
54
32.34
52.43
19
A
SER
61
36.00
50.20
19
A
GLU
63
-83.13
40.32
19
A
GLU
65
-36.50
100.25
19
A
PRO
70
-69.78
-165.09
20
A
LYS
10
-173.68
137.92
20
A
PRO
11
-69.79
-172.57
20
A
GLN
14
-174.53
117.94
20
A
PRO
19
-69.74
-90.82
20
A
ARG
21
-131.61
-60.41
20
A
PRO
24
-69.73
2.35
20
A
PRO
27
-69.80
3.28
20
A
HIS
32
-47.19
95.26
20
A
GLN
33
-49.29
105.56
20
A
LYS
54
30.86
54.82
20
A
ALA
59
-42.13
108.08
20
A
SER
61
70.36
38.36
20
A
ALA
62
-82.31
-77.23
20
A
GLU
63
-35.13
94.24
20
A
SER
68
-124.42
-57.92
Solution structure of the C2H2 type zinc-binding domain of human zinc finger protein 292
1
N
N
2
N
N
A
ILE
41
A
ILE
41
HELX_P
A
HIS
53
A
HIS
53
1
1
13
metalc
2.329
A
CYS
30
A
SG
CYS
30
1_555
A
ZN
201
B
ZN
ZN
1_555
metalc
2.366
A
CYS
35
A
SG
CYS
35
1_555
A
ZN
201
B
ZN
ZN
1_555
metalc
2.333
A
HIS
48
A
NE2
HIS
48
1_555
A
ZN
201
B
ZN
ZN
1_555
metalc
2.339
A
HIS
53
A
NE2
HIS
53
1_555
A
ZN
201
B
ZN
ZN
1_555
DNA BINDING PROTEIN
DNA binding, Nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, DNA BINDING PROTEIN
ZN292_HUMAN
UNP
1
1340
O60281
RKKPVSQSLEFPTRYSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAEVEEE
1340
1399
1X3C
8
67
O60281
A
1
8
67
1
cloning artifact
GLY
1
1X3C
A
O60281
UNP
1
1
cloning artifact
SER
2
1X3C
A
O60281
UNP
2
1
cloning artifact
SER
3
1X3C
A
O60281
UNP
3
1
cloning artifact
GLY
4
1X3C
A
O60281
UNP
4
1
cloning artifact
SER
5
1X3C
A
O60281
UNP
5
1
cloning artifact
SER
6
1X3C
A
O60281
UNP
6
1
cloning artifact
GLY
7
1X3C
A
O60281
UNP
7
1
cloning artifact
SER
68
1X3C
A
O60281
UNP
68
1
cloning artifact
GLY
69
1X3C
A
O60281
UNP
69
1
cloning artifact
PRO
70
1X3C
A
O60281
UNP
70
1
cloning artifact
SER
71
1X3C
A
O60281
UNP
71
1
cloning artifact
SER
72
1X3C
A
O60281
UNP
72
1
cloning artifact
GLY
73
1X3C
A
O60281
UNP
73
2
anti-parallel
A
TYR
28
A
TYR
28
A
CYS
30
A
CYS
30
A
ALA
37
A
ALA
37
A
PHE
39
A
PHE
39
BINDING SITE FOR RESIDUE ZN A 201
A
ZN
201
Software
4
A
CYS
30
A
CYS
30
4
1_555
A
CYS
35
A
CYS
35
4
1_555
A
HIS
48
A
HIS
48
4
1_555
A
HIS
53
A
HIS
53
4
1_555