0.029314
0.000000
0.001800
0.000000
0.014031
0.000000
0.000000
0.000000
0.018687
0.00000
0.00000
0.00000
Arai, R.
Kukimoto-Niino, M.
Sugahara, M.
Shirouzu, M.
Yokoyama, S.
RIKEN Structural Genomics/Proteomics Initiative (RSGI)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
90.00
93.51
90.00
34.113
71.272
53.615
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Protein Sci.
PRCIEI
0795
0961-8368
15
373
377
10.1110/ps.051922406
16385007
Crystal structure of the probable haloacid dehalogenase PH0459 from Pyrococcus horikoshii OT3
2006
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2004-10-28
RIGAKU JUPITER 210
MAD
M
x-ray
1
0.97890
1.0
0.97930
1.0
0.96000
1.0
BL26B1
SPring-8
0.97890, 0.97930, 0.96000
SYNCHROTRON
SPRING-8 BEAMLINE BL26B1
27092.984
hypothetical protein PH0459
3.8.1.-
1
man
polymer
18.015
water
150
nat
water
no
yes
(MSE)IRAVFFDFVGTLLSVEGEAKTHLKI(MSE)EEVLGDYPLNPKTLLDEYEKLTREAFSNYAGKPYRPIRDIEEEV
(MSE)RKLAEKYGFKYPENFWEIHLR(MSE)HQRYGELYPEVVEVLKSLKGKYHVG(MSE)ITDSDTEYL(MSE)AHLDA
LGIKDLFDSITTSEEAGFFKPHPRIFELALKKAGVKGEEAVYVGDNPVKDCGGSKNLG(MSE)TSILLDRKGEKREFWDK
CDFIVSDLREVIKIVDELNGQ
MIRAVFFDFVGTLLSVEGEAKTHLKIMEEVLGDYPLNPKTLLDEYEKLTREAFSNYAGKPYRPIRDIEEEVMRKLAEKYG
FKYPENFWEIHLRMHQRYGELYPEVVEVLKSLKGKYHVGMITDSDTEYLMAHLDALGIKDLFDSITTSEEAGFFKPHPRI
FELALKKAGVKGEEAVYVGDNPVKDCGGSKNLGMTSILLDRKGEKREFWDKCDFIVSDLREVIKIVDELNGQ
A
pho001000459.1
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Pyrococcus
Pyrococcus horikoshii
OT3
Escherichia
sample
70601
Pyrococcus horikoshii
562
Escherichia coli
BL21-CodonPlus(DE3)-RIL-X
PLASMID
pET-11a
1
2.43
49.46
Oil batch
7.0
0.1M Tris-HCl, 0.88M tri-Sodium Citrate, pH 7.0, Oil batch, temperature 293K
293
RIKEN Structural Genomics/Proteomics Initiative
RSGI
NPPSFA, National Project on Protein Structural and Functional Analyses
repository
Initial release
Version format compliance
Source and taxonomy
Version format compliance
1
0
2005-11-12
1
1
2008-04-30
1
2
2011-07-13
Y
PDBJ
Y
PDBJ
2005-05-12
REL
REL
HOH
water
HOH
1
2
HOH
HOH
233
A
HOH
2
2
HOH
HOH
234
A
HOH
3
2
HOH
HOH
235
A
HOH
4
2
HOH
HOH
236
A
HOH
5
2
HOH
HOH
237
A
HOH
6
2
HOH
HOH
238
A
HOH
7
2
HOH
HOH
239
A
HOH
8
2
HOH
HOH
240
A
HOH
9
2
HOH
HOH
241
A
HOH
10
2
HOH
HOH
242
A
HOH
11
2
HOH
HOH
243
A
HOH
12
2
HOH
HOH
244
A
HOH
13
2
HOH
HOH
245
A
HOH
14
2
HOH
HOH
246
A
HOH
15
2
HOH
HOH
247
A
HOH
16
2
HOH
HOH
248
A
HOH
17
2
HOH
HOH
249
A
HOH
18
2
HOH
HOH
250
A
HOH
19
2
HOH
HOH
251
A
HOH
20
2
HOH
HOH
252
A
HOH
21
2
HOH
HOH
253
A
HOH
22
2
HOH
HOH
254
A
HOH
23
2
HOH
HOH
255
A
HOH
24
2
HOH
HOH
256
A
HOH
25
2
HOH
HOH
257
A
HOH
26
2
HOH
HOH
258
A
HOH
27
2
HOH
HOH
259
A
HOH
28
2
HOH
HOH
260
A
HOH
29
2
HOH
HOH
261
A
HOH
30
2
HOH
HOH
262
A
HOH
31
2
HOH
HOH
263
A
HOH
32
2
HOH
HOH
264
A
HOH
33
2
HOH
HOH
265
A
HOH
34
2
HOH
HOH
266
A
HOH
35
2
HOH
HOH
267
A
HOH
36
2
HOH
HOH
268
A
HOH
37
2
HOH
HOH
269
A
HOH
38
2
HOH
HOH
270
A
HOH
39
2
HOH
HOH
271
A
HOH
40
2
HOH
HOH
272
A
HOH
41
2
HOH
HOH
273
A
HOH
42
2
HOH
HOH
274
A
HOH
43
2
HOH
HOH
275
A
HOH
44
2
HOH
HOH
276
A
HOH
45
2
HOH
HOH
277
A
HOH
46
2
HOH
HOH
278
A
HOH
47
2
HOH
HOH
279
A
HOH
48
2
HOH
HOH
280
A
HOH
49
2
HOH
HOH
281
A
HOH
50
2
HOH
HOH
282
A
HOH
51
2
HOH
HOH
283
A
HOH
52
2
HOH
HOH
284
A
HOH
53
2
HOH
HOH
285
A
HOH
54
2
HOH
HOH
286
A
HOH
55
2
HOH
HOH
287
A
HOH
56
2
HOH
HOH
288
A
HOH
57
2
HOH
HOH
289
A
HOH
58
2
HOH
HOH
290
A
HOH
59
2
HOH
HOH
291
A
HOH
60
2
HOH
HOH
292
A
HOH
61
2
HOH
HOH
293
A
HOH
62
2
HOH
HOH
294
A
HOH
63
2
HOH
HOH
295
A
HOH
64
2
HOH
HOH
296
A
HOH
65
2
HOH
HOH
297
A
HOH
66
2
HOH
HOH
298
A
HOH
67
2
HOH
HOH
299
A
HOH
68
2
HOH
HOH
300
A
HOH
69
2
HOH
HOH
301
A
HOH
70
2
HOH
HOH
302
A
HOH
71
2
HOH
HOH
303
A
HOH
72
2
HOH
HOH
304
A
HOH
73
2
HOH
HOH
305
A
HOH
74
2
HOH
HOH
306
A
HOH
75
2
HOH
HOH
307
A
HOH
76
2
HOH
HOH
308
A
HOH
77
2
HOH
HOH
309
A
HOH
78
2
HOH
HOH
310
A
HOH
79
2
HOH
HOH
311
A
HOH
80
2
HOH
HOH
312
A
HOH
81
2
HOH
HOH
313
A
HOH
82
2
HOH
HOH
314
A
HOH
83
2
HOH
HOH
315
A
HOH
84
2
HOH
HOH
316
A
HOH
85
2
HOH
HOH
317
A
HOH
86
2
HOH
HOH
318
A
HOH
87
2
HOH
HOH
319
A
HOH
88
2
HOH
HOH
320
A
HOH
89
2
HOH
HOH
321
A
HOH
90
2
HOH
HOH
322
A
HOH
91
2
HOH
HOH
323
A
HOH
92
2
HOH
HOH
324
A
HOH
93
2
HOH
HOH
325
A
HOH
94
2
HOH
HOH
326
A
HOH
95
2
HOH
HOH
327
A
HOH
96
2
HOH
HOH
328
A
HOH
97
2
HOH
HOH
329
A
HOH
98
2
HOH
HOH
330
A
HOH
99
2
HOH
HOH
331
A
HOH
100
2
HOH
HOH
332
A
HOH
101
2
HOH
HOH
333
A
HOH
102
2
HOH
HOH
334
A
HOH
103
2
HOH
HOH
335
A
HOH
104
2
HOH
HOH
336
A
HOH
105
2
HOH
HOH
337
A
HOH
106
2
HOH
HOH
338
A
HOH
107
2
HOH
HOH
339
A
HOH
108
2
HOH
HOH
340
A
HOH
109
2
HOH
HOH
341
A
HOH
110
2
HOH
HOH
342
A
HOH
111
2
HOH
HOH
343
A
HOH
112
2
HOH
HOH
344
A
HOH
113
2
HOH
HOH
345
A
HOH
114
2
HOH
HOH
346
A
HOH
115
2
HOH
HOH
347
A
HOH
116
2
HOH
HOH
348
A
HOH
117
2
HOH
HOH
349
A
HOH
118
2
HOH
HOH
350
A
HOH
119
2
HOH
HOH
351
A
HOH
120
2
HOH
HOH
352
A
HOH
121
2
HOH
HOH
353
A
HOH
122
2
HOH
HOH
354
A
HOH
123
2
HOH
HOH
355
A
HOH
124
2
HOH
HOH
356
A
HOH
125
2
HOH
HOH
357
A
HOH
126
2
HOH
HOH
358
A
HOH
127
2
HOH
HOH
359
A
HOH
128
2
HOH
HOH
360
A
HOH
129
2
HOH
HOH
361
A
HOH
130
2
HOH
HOH
362
A
HOH
131
2
HOH
HOH
363
A
HOH
132
2
HOH
HOH
364
A
HOH
133
2
HOH
HOH
365
A
HOH
134
2
HOH
HOH
366
A
HOH
135
2
HOH
HOH
367
A
HOH
136
2
HOH
HOH
368
A
HOH
137
2
HOH
HOH
369
A
HOH
138
2
HOH
HOH
370
A
HOH
139
2
HOH
HOH
371
A
HOH
140
2
HOH
HOH
372
A
HOH
141
2
HOH
HOH
373
A
HOH
142
2
HOH
HOH
374
A
HOH
143
2
HOH
HOH
375
A
HOH
144
2
HOH
HOH
376
A
HOH
145
2
HOH
HOH
377
A
HOH
146
2
HOH
HOH
378
A
HOH
147
2
HOH
HOH
379
A
HOH
148
2
HOH
HOH
380
A
HOH
149
2
HOH
HOH
381
A
HOH
150
2
HOH
HOH
382
A
MSE
1
n
1
MSE
1
A
ILE
2
n
2
ILE
2
A
ARG
3
n
3
ARG
3
A
ALA
4
n
4
ALA
4
A
VAL
5
n
5
VAL
5
A
PHE
6
n
6
PHE
6
A
PHE
7
n
7
PHE
7
A
ASP
8
n
8
ASP
8
A
PHE
9
n
9
PHE
9
A
VAL
10
n
10
VAL
10
A
GLY
11
n
11
GLY
11
A
THR
12
n
12
THR
12
A
LEU
13
n
13
LEU
13
A
LEU
14
n
14
LEU
14
A
SER
15
n
15
SER
15
A
VAL
16
n
16
VAL
16
A
GLU
17
n
17
GLU
17
A
GLY
18
n
18
GLY
18
A
GLU
19
n
19
GLU
19
A
ALA
20
n
20
ALA
20
A
LYS
21
n
21
LYS
21
A
THR
22
n
22
THR
22
A
HIS
23
n
23
HIS
23
A
LEU
24
n
24
LEU
24
A
LYS
25
n
25
LYS
25
A
ILE
26
n
26
ILE
26
A
MSE
27
n
27
MSE
27
A
GLU
28
n
28
GLU
28
A
GLU
29
n
29
GLU
29
A
VAL
30
n
30
VAL
30
A
LEU
31
n
31
LEU
31
A
GLY
32
n
32
GLY
32
A
ASP
33
n
33
ASP
33
A
TYR
34
n
34
TYR
34
A
PRO
35
n
35
PRO
35
A
LEU
36
n
36
LEU
36
A
ASN
37
n
37
ASN
37
A
PRO
38
n
38
PRO
38
A
LYS
39
n
39
LYS
39
A
THR
40
n
40
THR
40
A
LEU
41
n
41
LEU
41
A
LEU
42
n
42
LEU
42
A
ASP
43
n
43
ASP
43
A
GLU
44
n
44
GLU
44
A
TYR
45
n
45
TYR
45
A
GLU
46
n
46
GLU
46
A
LYS
47
n
47
LYS
47
A
LEU
48
n
48
LEU
48
A
THR
49
n
49
THR
49
A
ARG
50
n
50
ARG
50
A
GLU
51
n
51
GLU
51
A
ALA
52
n
52
ALA
52
A
PHE
53
n
53
PHE
53
A
SER
54
n
54
SER
54
A
ASN
55
n
55
ASN
55
A
TYR
56
n
56
TYR
56
A
ALA
57
n
57
ALA
57
A
GLY
58
n
58
GLY
58
A
LYS
59
n
59
LYS
59
A
PRO
60
n
60
PRO
60
A
TYR
61
n
61
TYR
61
A
ARG
62
n
62
ARG
62
A
PRO
63
n
63
PRO
63
A
ILE
64
n
64
ILE
64
A
ARG
65
n
65
ARG
65
A
ASP
66
n
66
ASP
66
A
ILE
67
n
67
ILE
67
A
GLU
68
n
68
GLU
68
A
GLU
69
n
69
GLU
69
A
GLU
70
n
70
GLU
70
A
VAL
71
n
71
VAL
71
A
MSE
72
n
72
MSE
72
A
ARG
73
n
73
ARG
73
A
LYS
74
n
74
LYS
74
A
LEU
75
n
75
LEU
75
A
ALA
76
n
76
ALA
76
A
GLU
77
n
77
GLU
77
A
LYS
78
n
78
LYS
78
A
TYR
79
n
79
TYR
79
A
GLY
80
n
80
GLY
80
A
PHE
81
n
81
PHE
81
A
LYS
82
n
82
LYS
82
A
TYR
83
n
83
TYR
83
A
PRO
84
n
84
PRO
84
A
GLU
85
n
85
GLU
85
A
ASN
86
n
86
ASN
86
A
PHE
87
n
87
PHE
87
A
TRP
88
n
88
TRP
88
A
GLU
89
n
89
GLU
89
A
ILE
90
n
90
ILE
90
A
HIS
91
n
91
HIS
91
A
LEU
92
n
92
LEU
92
A
ARG
93
n
93
ARG
93
A
MSE
94
n
94
MSE
94
A
HIS
95
n
95
HIS
95
A
GLN
96
n
96
GLN
96
A
ARG
97
n
97
ARG
97
A
TYR
98
n
98
TYR
98
A
GLY
99
n
99
GLY
99
A
GLU
100
n
100
GLU
100
A
LEU
101
n
101
LEU
101
A
TYR
102
n
102
TYR
102
A
PRO
103
n
103
PRO
103
A
GLU
104
n
104
GLU
104
A
VAL
105
n
105
VAL
105
A
VAL
106
n
106
VAL
106
A
GLU
107
n
107
GLU
107
A
VAL
108
n
108
VAL
108
A
LEU
109
n
109
LEU
109
A
LYS
110
n
110
LYS
110
A
SER
111
n
111
SER
111
A
LEU
112
n
112
LEU
112
A
LYS
113
n
113
LYS
113
A
GLY
114
n
114
GLY
114
A
LYS
115
n
115
LYS
115
A
TYR
116
n
116
TYR
116
A
HIS
117
n
117
HIS
117
A
VAL
118
n
118
VAL
118
A
GLY
119
n
119
GLY
119
A
MSE
120
n
120
MSE
120
A
ILE
121
n
121
ILE
121
A
THR
122
n
122
THR
122
A
ASP
123
n
123
ASP
123
A
SER
124
n
124
SER
124
A
ASP
125
n
125
ASP
125
A
THR
126
n
126
THR
126
A
GLU
127
n
127
GLU
127
A
TYR
128
n
128
TYR
128
A
LEU
129
n
129
LEU
129
A
MSE
130
n
130
MSE
130
A
ALA
131
n
131
ALA
131
A
HIS
132
n
132
HIS
132
A
LEU
133
n
133
LEU
133
A
ASP
134
n
134
ASP
134
A
ALA
135
n
135
ALA
135
A
LEU
136
n
136
LEU
136
A
GLY
137
n
137
GLY
137
A
ILE
138
n
138
ILE
138
A
LYS
139
n
139
LYS
139
A
ASP
140
n
140
ASP
140
A
LEU
141
n
141
LEU
141
A
PHE
142
n
142
PHE
142
A
ASP
143
n
143
ASP
143
A
SER
144
n
144
SER
144
A
ILE
145
n
145
ILE
145
A
THR
146
n
146
THR
146
A
THR
147
n
147
THR
147
A
SER
148
n
148
SER
148
A
GLU
149
n
149
GLU
149
A
GLU
150
n
150
GLU
150
A
ALA
151
n
151
ALA
151
A
GLY
152
n
152
GLY
152
A
PHE
153
n
153
PHE
153
A
PHE
154
n
154
PHE
154
A
LYS
155
n
155
LYS
155
A
PRO
156
n
156
PRO
156
A
HIS
157
n
157
HIS
157
A
PRO
158
n
158
PRO
158
A
ARG
159
n
159
ARG
159
A
ILE
160
n
160
ILE
160
A
PHE
161
n
161
PHE
161
A
GLU
162
n
162
GLU
162
A
LEU
163
n
163
LEU
163
A
ALA
164
n
164
ALA
164
A
LEU
165
n
165
LEU
165
A
LYS
166
n
166
LYS
166
A
LYS
167
n
167
LYS
167
A
ALA
168
n
168
ALA
168
A
GLY
169
n
169
GLY
169
A
VAL
170
n
170
VAL
170
A
LYS
171
n
171
LYS
171
A
GLY
172
n
172
GLY
172
A
GLU
173
n
173
GLU
173
A
GLU
174
n
174
GLU
174
A
ALA
175
n
175
ALA
175
A
VAL
176
n
176
VAL
176
A
TYR
177
n
177
TYR
177
A
VAL
178
n
178
VAL
178
A
GLY
179
n
179
GLY
179
A
ASP
180
n
180
ASP
180
A
ASN
181
n
181
ASN
181
A
PRO
182
n
182
PRO
182
A
VAL
183
n
183
VAL
183
A
LYS
184
n
184
LYS
184
A
ASP
185
n
185
ASP
185
A
CYS
186
n
186
CYS
186
A
GLY
187
n
187
GLY
187
A
GLY
188
n
188
GLY
188
A
SER
189
n
189
SER
189
A
LYS
190
n
190
LYS
190
A
ASN
191
n
191
ASN
191
A
LEU
192
n
192
LEU
192
A
GLY
193
n
193
GLY
193
A
MSE
194
n
194
MSE
194
A
THR
195
n
195
THR
195
A
SER
196
n
196
SER
196
A
ILE
197
n
197
ILE
197
A
LEU
198
n
198
LEU
198
A
LEU
199
n
199
LEU
199
A
ASP
200
n
200
ASP
200
A
ARG
201
n
201
ARG
201
A
LYS
202
n
202
LYS
202
A
GLY
203
n
203
GLY
203
A
GLU
204
n
204
GLU
204
A
LYS
205
n
205
LYS
205
A
ARG
206
n
206
ARG
206
A
GLU
207
n
207
GLU
207
A
PHE
208
n
208
PHE
208
A
TRP
209
n
209
TRP
209
A
ASP
210
n
210
ASP
210
A
LYS
211
n
211
LYS
211
A
CYS
212
n
212
CYS
212
A
ASP
213
n
213
ASP
213
A
PHE
214
n
214
PHE
214
A
ILE
215
n
215
ILE
215
A
VAL
216
n
216
VAL
216
A
SER
217
n
217
SER
217
A
ASP
218
n
218
ASP
218
A
LEU
219
n
219
LEU
219
A
ARG
220
n
220
ARG
220
A
GLU
221
n
221
GLU
221
A
VAL
222
n
222
VAL
222
A
ILE
223
n
223
ILE
223
A
LYS
224
n
224
LYS
224
A
ILE
225
n
225
ILE
225
A
VAL
226
n
226
VAL
226
A
ASP
227
n
227
ASP
227
A
GLU
228
n
228
GLU
228
A
LEU
229
n
229
LEU
229
A
ASN
230
n
230
ASN
230
A
n
231
231
A
n
232
232
A
author_defined_assembly
1
monomeric
A
MSE
1
SELENOMETHIONINE
A
MSE
1
MET
A
MSE
27
SELENOMETHIONINE
A
MSE
27
MET
A
MSE
72
SELENOMETHIONINE
A
MSE
72
MET
A
MSE
94
SELENOMETHIONINE
A
MSE
94
MET
A
MSE
120
SELENOMETHIONINE
A
MSE
120
MET
A
MSE
130
SELENOMETHIONINE
A
MSE
130
MET
A
MSE
194
SELENOMETHIONINE
A
MSE
194
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
THR
146
A
O
THR
146
A
N
MSE
120
A
N
MSE
120
A
O
HIS
117
A
O
HIS
117
A
N
VAL
5
A
N
VAL
5
A
N
PHE
6
A
N
PHE
6
A
O
VAL
176
A
O
VAL
176
A
N
GLY
179
A
N
GLY
179
A
O
LEU
199
A
O
LEU
199
A
N
LEU
198
A
N
LEU
198
A
O
PHE
214
A
O
PHE
214
1
A
GLY
231
A
GLY
231
1
Y
1
A
GLN
232
A
GLN
232
1
Y
1
A
A
CB
CG
GLU
GLU
19
19
0.124
0.019
1.517
1.641
N
1
A
PHE
9
-108.06
-72.05
1
A
PRO
35
-70.69
45.88
protein_rep.param
protein.top
water_rep.param
water.top
22.5
-0.90
0.00
1.29
-2.72
0.00
3.62
0.207
0.005
0.166
2.00
42.80
1691
16891
10.0
97.8
RANDOM
976767.63
0.000000
1
RESTRAINED
THROUGHOUT
0.0
MAD
FLAT MODEL
46.0682
0.37847
0.23
0.18
5.00
0.18
0.10
2.00
42.80
150
2019
0
0
1869
0.014
1.6
22.7
0.95
4.75
1.50
5.17
2.00
7.18
2.00
9.55
2.50
0.234
0.015
0.175
2.13
242
2336
1933
6
9.4
89.1
6.0
2.0
50
1X42
17044
-3
0.089
1
12.027
3.676
99.3
2.00
2.07
4.996
1682
0.272
1
3.6
98.8
refinement
CNS
1.1
data reduction
HKL-2000
data scaling
SCALEPACK
phasing
SOLVE
hypothetical protein PH0459(E.C.3.8.1.-)
Crystal structure of a haloacid dehalogenase family protein (PH0459) from Pyrococcus horikoshii OT3
1
N
N
2
N
N
A
SER
15
A
SER
15
HELX_P
A
GLY
32
A
GLY
32
1
1
18
A
ASN
37
A
ASN
37
HELX_P
A
ALA
57
A
ALA
57
1
2
21
A
PRO
63
A
PRO
63
HELX_P
A
GLY
80
A
GLY
80
1
3
18
A
ASN
86
A
ASN
86
HELX_P
A
GLY
99
A
GLY
99
1
4
14
A
GLU
104
A
GLU
104
HELX_P
A
LYS
113
A
LYS
113
1
5
10
A
ASP
125
A
ASP
125
HELX_P
A
LEU
136
A
LEU
136
1
6
12
A
ILE
138
A
ILE
138
HELX_P
A
PHE
142
A
PHE
142
5
7
5
A
SER
148
A
SER
148
HELX_P
A
GLY
152
A
GLY
152
1
8
5
A
HIS
157
A
HIS
157
HELX_P
A
GLY
169
A
GLY
169
1
9
13
A
LYS
171
A
LYS
171
HELX_P
A
GLU
173
A
GLU
173
5
10
3
A
ASP
185
A
ASP
185
HELX_P
A
ASN
191
A
ASN
191
1
11
7
A
LYS
205
A
LYS
205
HELX_P
A
CYS
212
A
CYS
212
5
12
8
A
ARG
220
A
ARG
220
HELX_P
A
ASN
230
A
ASN
230
1
13
11
disulf
2.092
A
CYS
186
A
SG
CYS
186
1_555
A
CYS
212
A
SG
CYS
212
1_555
covale
1.325
A
MSE
1
A
C
MSE
1
1_555
A
ILE
2
A
N
ILE
2
1_555
covale
1.332
A
ILE
26
A
C
ILE
26
1_555
A
MSE
27
A
N
MSE
27
1_555
covale
1.328
A
MSE
27
A
C
MSE
27
1_555
A
GLU
28
A
N
GLU
28
1_555
covale
1.333
A
VAL
71
A
C
VAL
71
1_555
A
MSE
72
A
N
MSE
72
1_555
covale
1.333
A
MSE
72
A
C
MSE
72
1_555
A
ARG
73
A
N
ARG
73
1_555
covale
1.333
A
ARG
93
A
C
ARG
93
1_555
A
MSE
94
A
N
MSE
94
1_555
covale
1.332
A
MSE
94
A
C
MSE
94
1_555
A
HIS
95
A
N
HIS
95
1_555
covale
1.322
A
GLY
119
A
C
GLY
119
1_555
A
MSE
120
A
N
MSE
120
1_555
covale
1.322
A
MSE
120
A
C
MSE
120
1_555
A
ILE
121
A
N
ILE
121
1_555
covale
1.327
A
LEU
129
A
C
LEU
129
1_555
A
MSE
130
A
N
MSE
130
1_555
covale
1.336
A
MSE
130
A
C
MSE
130
1_555
A
ALA
131
A
N
ALA
131
1_555
covale
1.324
A
GLY
193
A
C
GLY
193
1_555
A
MSE
194
A
N
MSE
194
1_555
covale
1.334
A
MSE
194
A
C
MSE
194
1_555
A
THR
195
A
N
THR
195
1_555
HYDROLASE
haloacid dehalogenase, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, hydrolase
A
LYS
155
A
LYS
155
1
A
PRO
156
A
PRO
156
0.13
O58216_PYRHO
UNP
1
1
O58216
MIRAVFFDFVGTLLSVEGEAKTHLKIMEEVLGDYPLNPKTLLDEYEKLTREAFSNYAGKPYRPIRDIEEEVMRKLAEKYG
FKYPENFWEIHLRMHQRYGELYPEVVEVLKSLKGKYHVGMITDSDTEYLMAHLDALGIKDLFDSITTSEEAGFFKPHPRI
FELALKKAGVKGEEAVYVGDNPVKDCGGSKNLGMTSILLDRKGEKREFWDKCDFIVSDLREVIKIVDELNGQ
1
232
1X42
1
232
O58216
A
1
1
232
1
MET
MODIFIED RESIDUE
MSE
1
1X42
A
O58216
UNP
1
1
1
MET
MODIFIED RESIDUE
MSE
27
1X42
A
O58216
UNP
27
27
1
MET
MODIFIED RESIDUE
MSE
72
1X42
A
O58216
UNP
72
72
1
MET
MODIFIED RESIDUE
MSE
94
1X42
A
O58216
UNP
94
94
1
MET
MODIFIED RESIDUE
MSE
120
1X42
A
O58216
UNP
120
120
1
MET
MODIFIED RESIDUE
MSE
130
1X42
A
O58216
UNP
130
130
1
MET
MODIFIED RESIDUE
MSE
194
1X42
A
O58216
UNP
194
194
6
parallel
parallel
parallel
parallel
parallel
A
SER
144
A
SER
144
A
THR
147
A
THR
147
A
HIS
117
A
HIS
117
A
THR
122
A
THR
122
A
ALA
4
A
ALA
4
A
PHE
7
A
PHE
7
A
ALA
175
A
ALA
175
A
GLY
179
A
GLY
179
A
THR
195
A
THR
195
A
LEU
199
A
LEU
199
A
PHE
214
A
PHE
214
A
VAL
216
A
VAL
216
4
P 1 21 1