1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
He, F.
Muto, Y.
Inoue, M.
Kigawa, T.
Shirouzu, M.
Terada, T.
Yokoyama, S.
RIKEN Structural Genomics/Proteomics Initiative (RSGI)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
To be Published
0353
Solution structure of LIM domain in Four and a half LIM domains protein 2
10.2210/pdb1x4l/pdb
pdb_00001x4l
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
7516.346
Skeletal muscle LIM-protein 3
LIM domain
1
man
polymer
65.409
ZINC ION
2
syn
non-polymer
SLIM 3, LIM-domain protein DRAL, Four and a half LIM domains protein 2, FHL-2
no
no
GSSGSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDISGPSSG
GSSGSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDISGPSSG
A
hsi002014447.1
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
sample
Cell free protein synthesis
FHL2, DRAL, SLIM3
9606
Homo sapiens
PLASMID
P040921-14
RIKEN Structural Genomics/Proteomics Initiative
RSGI
NPPSFA, National Project on Protein Structural and Functional Analyses
database_2
pdbx_nmr_software
pdbx_nmr_spectrometer
pdbx_struct_assembly
pdbx_struct_oper_list
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2005-11-14
1
1
2008-04-30
1
2
2011-07-13
1
3
2022-03-02
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_pdbx_nmr_spectrometer.model
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
HELIX
Determination method: author determined
Y
PDBJ
Y
PDBJ
2005-05-14
REL
REL
ZN
ZINC ION
target function,structures with the lowest energy
100
20
3D_15N-separated_NOESY
3D_13C-separated_NOESY
120mM
7.0
ambient
298
K
torsion angle dynamics
1
lowest energy
0.8mM U-15, 13C; 20mM d-Tris-HCl(pH 7.0); 100mM NaCl; 100uM ZnCl2; 1mM d-DTT; 0.02% NaN3
90% H2O/10% D2O
Bruker
collection
XwinNMR
2.6
Delaglio,F.
processing
NMRPipe
20031121
Johnson,B.A.
data analysis
NMRView
5.0.4
Kobayashi,N.
data analysis
KUJIRA
0.863
Guntert,P.
structure solution
CYANA
2.0.17
Guntert,P.
refinement
CYANA
2.0.17
800
Bruker
AVANCE
ZN
201
2
ZN
ZN
201
A
ZN
401
2
ZN
ZN
401
A
GLY
1
n
1
GLY
1
A
SER
2
n
2
SER
2
A
SER
3
n
3
SER
3
A
GLY
4
n
4
GLY
4
A
SER
5
n
5
SER
5
A
SER
6
n
6
SER
6
A
GLY
7
n
7
GLY
7
A
CYS
8
n
8
CYS
8
A
ALA
9
n
9
ALA
9
A
GLY
10
n
10
GLY
10
A
CYS
11
n
11
CYS
11
A
THR
12
n
12
THR
12
A
ASN
13
n
13
ASN
13
A
PRO
14
n
14
PRO
14
A
ILE
15
n
15
ILE
15
A
SER
16
n
16
SER
16
A
GLY
17
n
17
GLY
17
A
LEU
18
n
18
LEU
18
A
GLY
19
n
19
GLY
19
A
GLY
20
n
20
GLY
20
A
THR
21
n
21
THR
21
A
LYS
22
n
22
LYS
22
A
TYR
23
n
23
TYR
23
A
ILE
24
n
24
ILE
24
A
SER
25
n
25
SER
25
A
PHE
26
n
26
PHE
26
A
GLU
27
n
27
GLU
27
A
GLU
28
n
28
GLU
28
A
ARG
29
n
29
ARG
29
A
GLN
30
n
30
GLN
30
A
TRP
31
n
31
TRP
31
A
HIS
32
n
32
HIS
32
A
ASN
33
n
33
ASN
33
A
ASP
34
n
34
ASP
34
A
CYS
35
n
35
CYS
35
A
PHE
36
n
36
PHE
36
A
ASN
37
n
37
ASN
37
A
CYS
38
n
38
CYS
38
A
LYS
39
n
39
LYS
39
A
LYS
40
n
40
LYS
40
A
CYS
41
n
41
CYS
41
A
SER
42
n
42
SER
42
A
LEU
43
n
43
LEU
43
A
SER
44
n
44
SER
44
A
LEU
45
n
45
LEU
45
A
VAL
46
n
46
VAL
46
A
GLY
47
n
47
GLY
47
A
ARG
48
n
48
ARG
48
A
GLY
49
n
49
GLY
49
A
PHE
50
n
50
PHE
50
A
LEU
51
n
51
LEU
51
A
THR
52
n
52
THR
52
A
GLU
53
n
53
GLU
53
A
ARG
54
n
54
ARG
54
A
ASP
55
n
55
ASP
55
A
ASP
56
n
56
ASP
56
A
ILE
57
n
57
ILE
57
A
LEU
58
n
58
LEU
58
A
CYS
59
n
59
CYS
59
A
PRO
60
n
60
PRO
60
A
ASP
61
n
61
ASP
61
A
CYS
62
n
62
CYS
62
A
GLY
63
n
63
GLY
63
A
LYS
64
n
64
LYS
64
A
ASP
65
n
65
ASP
65
A
ILE
66
n
66
ILE
66
A
SER
67
n
67
SER
67
A
GLY
68
n
68
GLY
68
A
PRO
69
n
69
PRO
69
A
SER
70
n
70
SER
70
A
SER
71
n
71
SER
71
A
GLY
72
n
72
GLY
72
A
author_defined_assembly
1
monomeric
A
CYS
8
A
SG
CYS
8
1_555
A
ZN
201
B
ZN
ZN
1_555
A
CYS
11
A
SG
CYS
11
1_555
102.6
A
CYS
8
A
SG
CYS
8
1_555
A
ZN
201
B
ZN
ZN
1_555
A
HIS
32
A
ND1
HIS
32
1_555
106.9
A
CYS
11
A
SG
CYS
11
1_555
A
ZN
201
B
ZN
ZN
1_555
A
HIS
32
A
ND1
HIS
32
1_555
107.8
A
CYS
8
A
SG
CYS
8
1_555
A
ZN
201
B
ZN
ZN
1_555
A
CYS
35
A
SG
CYS
35
1_555
112.7
A
CYS
11
A
SG
CYS
11
1_555
A
ZN
201
B
ZN
ZN
1_555
A
CYS
35
A
SG
CYS
35
1_555
107.8
A
HIS
32
A
ND1
HIS
32
1_555
A
ZN
201
B
ZN
ZN
1_555
A
CYS
35
A
SG
CYS
35
1_555
117.9
A
CYS
38
A
SG
CYS
38
1_555
A
ZN
401
C
ZN
ZN
1_555
A
CYS
41
A
SG
CYS
41
1_555
108.3
A
CYS
38
A
SG
CYS
38
1_555
A
ZN
401
C
ZN
ZN
1_555
A
CYS
59
A
SG
CYS
59
1_555
110.9
A
CYS
41
A
SG
CYS
41
1_555
A
ZN
401
C
ZN
ZN
1_555
A
CYS
59
A
SG
CYS
59
1_555
102.6
A
CYS
38
A
SG
CYS
38
1_555
A
ZN
401
C
ZN
ZN
1_555
A
CYS
62
A
SG
CYS
62
1_555
112.0
A
CYS
41
A
SG
CYS
41
1_555
A
ZN
401
C
ZN
ZN
1_555
A
CYS
62
A
SG
CYS
62
1_555
113.7
A
CYS
59
A
SG
CYS
59
1_555
A
ZN
401
C
ZN
ZN
1_555
A
CYS
62
A
SG
CYS
62
1_555
109.0
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
24
A
N
ILE
24
A
O
TRP
31
A
O
TRP
31
A
N
LEU
51
A
N
LEU
51
A
O
LEU
58
A
O
LEU
58
1
A
SER
5
-98.52
38.14
1
A
THR
12
35.60
47.41
1
A
GLU
28
-131.85
-44.58
1
A
PHE
36
-57.14
89.49
1
A
CYS
38
-43.37
166.47
1
A
PHE
50
-48.05
165.28
1
A
ARG
54
-35.95
-70.91
1
A
ASP
65
-112.08
53.15
1
A
PRO
69
-69.75
-173.85
1
A
SER
70
-61.62
90.89
2
A
SER
2
-124.58
-55.35
2
A
THR
12
32.88
54.99
2
A
ILE
15
-67.88
83.64
2
A
PHE
36
-51.53
94.03
2
A
CYS
38
-44.94
167.32
2
A
LYS
40
-96.06
-60.10
2
A
VAL
46
-43.28
109.27
2
A
ARG
54
-33.43
-72.13
2
A
PRO
69
-69.71
-174.45
3
A
SER
2
-36.72
149.78
3
A
THR
12
37.67
35.51
3
A
SER
16
-174.40
149.11
3
A
LEU
18
-83.01
46.41
3
A
GLU
28
-132.86
-41.62
3
A
ASN
33
-49.16
-19.07
3
A
PHE
36
-55.34
100.80
3
A
CYS
38
-42.91
166.39
3
A
ARG
54
-32.32
-72.34
3
A
SER
67
-80.45
42.55
3
A
SER
71
-106.50
42.90
4
A
ALA
9
-38.69
-31.10
4
A
THR
12
36.60
54.95
4
A
LYS
22
-84.21
31.47
4
A
GLU
28
-131.49
-44.07
4
A
PHE
36
-55.82
97.13
4
A
CYS
38
-46.77
166.30
4
A
SER
44
-56.12
106.50
4
A
ARG
54
-34.17
-70.70
4
A
LYS
64
-37.00
-37.72
4
A
SER
67
-105.51
50.61
4
A
PRO
69
-69.82
3.62
4
A
SER
70
-36.91
151.94
5
A
THR
12
33.40
52.00
5
A
SER
16
71.16
43.69
5
A
TYR
23
-46.28
155.74
5
A
GLU
28
-132.59
-44.21
5
A
PHE
36
-51.93
91.98
5
A
CYS
38
-43.52
166.33
5
A
PHE
50
-48.36
153.18
6
A
SER
2
-43.30
105.30
6
A
ALA
9
-81.42
39.83
6
A
THR
12
39.08
48.20
6
A
SER
16
-42.07
158.32
6
A
GLU
28
-130.77
-40.38
6
A
PHE
36
-45.92
97.87
6
A
CYS
38
-43.41
166.76
6
A
VAL
46
-40.89
109.51
6
A
ASP
65
-87.03
30.91
6
A
PRO
69
-69.71
83.44
7
A
ALA
9
-86.84
45.27
7
A
THR
12
35.36
43.63
7
A
LYS
22
-83.70
37.98
7
A
PHE
36
-56.03
102.80
7
A
CYS
38
-44.23
169.02
7
A
SER
67
-88.41
46.44
7
A
SER
71
-87.51
42.10
8
A
GLU
28
-134.88
-44.48
8
A
PHE
36
-52.88
103.33
8
A
CYS
38
-44.12
168.24
8
A
VAL
46
-57.64
108.93
8
A
ARG
54
-33.74
-70.17
8
A
SER
70
-170.09
144.07
9
A
SER
3
-80.64
46.63
9
A
SER
5
-168.72
117.17
9
A
CYS
8
-50.41
98.06
9
A
THR
12
35.62
45.72
9
A
GLU
28
-131.83
-43.94
9
A
ASN
33
-33.71
-34.08
9
A
PHE
36
-38.83
100.52
9
A
CYS
38
-45.46
166.55
9
A
ARG
54
-34.15
-72.74
9
A
ILE
66
-48.28
105.06
9
A
SER
67
-107.37
42.66
9
A
PRO
69
-69.70
84.26
10
A
SER
5
-168.72
110.38
10
A
SER
6
-36.23
108.22
10
A
THR
12
33.20
52.02
10
A
SER
16
-39.50
114.98
10
A
THR
21
-175.21
137.04
10
A
GLU
28
-135.04
-42.73
10
A
PHE
36
-54.31
95.44
10
A
CYS
38
-45.34
166.31
10
A
SER
70
-125.62
-58.62
11
A
SER
5
-85.22
42.61
11
A
THR
12
33.77
54.84
11
A
THR
21
-174.61
136.78
11
A
GLU
28
-132.88
-43.60
11
A
PHE
36
-51.64
91.90
11
A
CYS
38
-43.52
166.84
11
A
ARG
54
-31.45
-72.45
11
A
ILE
66
-38.10
107.10
11
A
SER
67
-107.12
45.06
12
A
SER
5
-67.30
91.07
12
A
THR
12
33.94
49.04
12
A
TYR
23
-49.41
157.83
12
A
GLU
28
-131.39
-43.97
12
A
PHE
36
-59.61
89.77
12
A
CYS
38
-46.40
167.39
12
A
VAL
46
-39.48
118.35
12
A
ARG
54
-31.73
-73.68
12
A
LYS
64
-29.75
-66.52
12
A
ILE
66
-35.70
121.06
13
A
CYS
8
-55.80
98.08
13
A
THR
12
34.60
48.96
13
A
SER
16
-170.90
123.76
13
A
LYS
22
-76.30
48.03
13
A
GLU
28
-130.48
-44.67
13
A
PHE
36
-52.31
96.51
13
A
CYS
38
-49.24
169.03
13
A
ARG
54
-32.29
-70.76
13
A
LYS
64
-39.81
-33.51
13
A
SER
67
-89.30
42.16
13
A
SER
70
-37.38
135.89
13
A
SER
71
-172.12
133.95
14
A
SER
6
-109.57
-64.35
14
A
THR
12
34.63
54.50
14
A
LEU
18
-71.17
-71.81
14
A
PHE
36
-42.26
104.27
14
A
CYS
38
-47.42
164.27
14
A
SER
44
-52.71
109.86
14
A
ARG
54
-31.55
-70.32
14
A
ILE
66
-35.01
119.54
15
A
THR
12
37.58
50.00
15
A
GLU
28
-133.41
-40.60
15
A
PHE
36
-57.59
99.83
15
A
CYS
38
-44.37
168.67
15
A
PRO
69
-69.79
90.61
15
A
SER
70
-36.43
124.70
16
A
SER
3
-101.73
-61.57
16
A
ALA
9
-81.97
46.67
16
A
THR
12
37.26
44.13
16
A
ILE
15
-121.27
-58.41
16
A
SER
16
35.23
54.13
16
A
TYR
23
-44.43
151.70
16
A
GLU
28
-133.30
-42.87
16
A
PHE
36
-56.26
109.66
16
A
CYS
38
-41.92
163.42
16
A
VAL
46
-48.54
86.41
16
A
LYS
64
-36.74
-35.82
17
A
SER
3
-168.61
116.55
17
A
ALA
9
-81.00
47.50
17
A
THR
12
36.18
52.04
17
A
LEU
18
-38.75
114.44
17
A
THR
21
-35.51
150.67
17
A
GLU
28
-130.58
-44.20
17
A
PHE
36
-56.87
104.74
17
A
CYS
38
-45.20
166.51
17
A
SER
44
-56.65
109.79
17
A
VAL
46
-57.15
108.14
17
A
ARG
54
-32.96
-73.61
17
A
LYS
64
-29.74
-55.92
17
A
SER
67
-103.41
41.75
18
A
SER
2
-39.48
153.28
18
A
THR
12
33.76
54.64
18
A
SER
16
-34.01
142.92
18
A
LEU
18
-123.51
-66.43
18
A
LYS
22
-78.78
38.96
18
A
GLU
28
-133.41
-44.62
18
A
PHE
36
-58.16
88.39
18
A
CYS
38
-45.79
169.16
18
A
VAL
46
-38.70
112.18
18
A
ARG
54
-34.98
-70.48
19
A
ALA
9
-39.86
-25.62
19
A
THR
12
34.77
46.59
19
A
SER
16
-34.92
127.80
19
A
PHE
36
-52.68
100.98
19
A
CYS
38
-48.65
164.80
19
A
PHE
50
-47.21
152.22
19
A
ARG
54
-33.13
-70.58
20
A
THR
12
37.54
51.23
20
A
SER
16
-34.75
111.25
20
A
GLU
28
-130.67
-44.58
20
A
ASN
33
-34.46
-32.75
20
A
PHE
36
-42.60
101.57
20
A
CYS
38
-48.62
165.34
20
A
VAL
46
-44.49
108.29
20
A
ARG
54
-30.09
-73.13
20
A
SER
67
-81.98
43.33
Solution structure of LIM domain in Four and a half LIM domains protein 2
1
N
N
2
N
N
2
N
N
A
PRO
60
A
PRO
60
HELX_P
A
LYS
64
A
LYS
64
1
1
5
metalc
2.348
A
CYS
8
A
SG
CYS
8
1_555
A
ZN
201
B
ZN
ZN
1_555
metalc
2.329
A
CYS
11
A
SG
CYS
11
1_555
A
ZN
201
B
ZN
ZN
1_555
metalc
2.038
A
HIS
32
A
ND1
HIS
32
1_555
A
ZN
201
B
ZN
ZN
1_555
metalc
2.262
A
CYS
35
A
SG
CYS
35
1_555
A
ZN
201
B
ZN
ZN
1_555
metalc
2.356
A
CYS
38
A
SG
CYS
38
1_555
A
ZN
401
C
ZN
ZN
1_555
metalc
2.352
A
CYS
41
A
SG
CYS
41
1_555
A
ZN
401
C
ZN
ZN
1_555
metalc
2.322
A
CYS
59
A
SG
CYS
59
1_555
A
ZN
401
C
ZN
ZN
1_555
metalc
2.247
A
CYS
62
A
SG
CYS
62
1_555
A
ZN
401
C
ZN
ZN
1_555
METAL BINDING PROTEIN
LIM domain, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, METAL BINDING PROTEIN
FHL2_HUMAN
UNP
1
221
Q14192
CAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDI
221
279
1X4L
8
66
Q14192
A
1
8
66
1
cloning artifact
GLY
1
1X4L
A
Q14192
UNP
1
1
cloning artifact
SER
2
1X4L
A
Q14192
UNP
2
1
cloning artifact
SER
3
1X4L
A
Q14192
UNP
3
1
cloning artifact
GLY
4
1X4L
A
Q14192
UNP
4
1
cloning artifact
SER
5
1X4L
A
Q14192
UNP
5
1
cloning artifact
SER
6
1X4L
A
Q14192
UNP
6
1
cloning artifact
GLY
7
1X4L
A
Q14192
UNP
7
1
cloning artifact
SER
67
1X4L
A
Q14192
UNP
67
1
cloning artifact
GLY
68
1X4L
A
Q14192
UNP
68
1
cloning artifact
PRO
69
1X4L
A
Q14192
UNP
69
1
cloning artifact
SER
70
1X4L
A
Q14192
UNP
70
1
cloning artifact
SER
71
1X4L
A
Q14192
UNP
71
1
cloning artifact
GLY
72
1X4L
A
Q14192
UNP
72
2
2
anti-parallel
anti-parallel
A
ILE
24
A
ILE
24
A
SER
25
A
SER
25
A
GLN
30
A
GLN
30
A
TRP
31
A
TRP
31
A
LEU
51
A
LEU
51
A
THR
52
A
THR
52
A
ILE
57
A
ILE
57
A
LEU
58
A
LEU
58
BINDING SITE FOR RESIDUE ZN A 201
A
ZN
201
Software
4
BINDING SITE FOR RESIDUE ZN A 401
A
ZN
401
Software
4
A
CYS
8
A
CYS
8
4
1_555
A
CYS
11
A
CYS
11
4
1_555
A
HIS
32
A
HIS
32
4
1_555
A
CYS
35
A
CYS
35
4
1_555
A
CYS
38
A
CYS
38
4
1_555
A
CYS
41
A
CYS
41
4
1_555
A
CYS
59
A
CYS
59
4
1_555
A
CYS
62
A
CYS
62
4
1_555