0.012074 0.006971 0.000000 0.000000 0.013942 0.000000 0.000000 0.000000 0.010696 0.00000 0.00000 0.00000 Kobayashi, T. Takimura, T. Sekine, R. Kelly, V.P. Kamata, K. Sakamoto, K. Nishimura, S. Yokoyama, S. RIKEN Structural Genomics/Proteomics Initiative (RSGI) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 82.820 82.820 93.490 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N O N 296 N O N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N S N 305 N O N 306 N O N 307 N O N 308 N O N 309 N N N 310 S C N 311 N C N 312 N O N 313 R C N 314 N O N 315 N C N 316 N O N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N N N 327 S C N 328 N C N 329 N O N 330 N C Y 331 N C Y 332 N C Y 333 N C Y 334 N N Y 335 N C Y 336 N C Y 337 N C Y 338 N C Y 339 N C N 340 N O N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N N N 354 S C N 355 N C N 356 N O N 357 N C Y 358 N C Y 359 N C Y 360 N C Y 361 N C Y 362 N C Y 363 N C N 364 N O N 365 N O N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N N N 378 S C N 379 N C N 380 N O N 381 N C N 382 N C N 383 N C N 384 N O N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N doub N 291 N doub N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N doub N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N doub N 317 N sing N 318 N sing N 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N doub Y 326 N sing Y 327 N sing N 328 N sing Y 329 N sing Y 330 N doub N 331 N sing Y 332 N doub N 333 N sing Y 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N doub N 345 N sing N 346 N sing N 347 N sing N 348 N sing Y 349 N doub Y 350 N sing Y 351 N sing N 352 N sing Y 353 N doub N 354 N sing Y 355 N doub N 356 N sing Y 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N doub N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing UK J.MOL.BIOL. JMOBAK 0070 0022-2836 346 105 117 10.1016/j.jmb.2004.11.034 15663931 Structural Snapshots of the KMSKS Loop Rearrangement for Amino Acid Activation by Bacterial Tyrosyl-tRNA Synthetase 2005 10.2210/pdb1x8x/pdb pdb_00001x8x 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 IMAGE PLATE RIGAKU RAXIS V Si 111 CHANNEL SINGLE WAVELENGTH M x-ray 1 1.0 1.0 BL32B2 SPring-8 1.0 SYNCHROTRON SPRING-8 BEAMLINE BL32B2 36073.773 Tyrosyl-tRNA synthetase 6.1.1.1 1 man polymer 96.063 SULFATE ION 1 syn non-polymer 181.189 TYROSINE 1 syn non-polymer 18.015 water 218 nat water Tyrosyl-Transfer RNA Synthetase, Tyrosine--tRNA ligase, TyrRS no no MASSNLIKQLQERGLVAQVTDEEALAERLAQGPIALYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIG DPSFKAAERKLNTEETVQEWVDKIRKQVAPFLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQR LNREDQGISFTEFSYNLLQGYDFACLNKQYGVVLQIGGSDQWGNITSGIDLTRRLHQNQVFGLTVPLITKADGTKFGKTE GGAVWLDPKKTSPYKFYQFWINTADADVYRFLKFFTFMSIEEINALEEEDKNSGKAPRAQYVLAEQVTRLVHGEEGLQAA KR MASSNLIKQLQERGLVAQVTDEEALAERLAQGPIALYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIG DPSFKAAERKLNTEETVQEWVDKIRKQVAPFLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQR LNREDQGISFTEFSYNLLQGYDFACLNKQYGVVLQIGGSDQWGNITSGIDLTRRLHQNQVFGLTVPLITKADGTKFGKTE GGAVWLDPKKTSPYKFYQFWINTADADVYRFLKFFTFMSIEEINALEEEDKNSGKAPRAQYVLAEQVTRLVHGEEGLQAA KR A eco001001308.5 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Escherichia Escherichia sample 562 Escherichia coli 562 Escherichia coli 1 2.6 51.7 VAPOR DIFFUSION, HANGING DROP 7.5 ammonium sulfate, PEG400, HEPES, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 RIKEN Structural Genomics/Proteomics Initiative RSGI chem_comp_atom chem_comp_bond database_2 struct_ref_seq_dif struct_site repository Initial release Version format compliance Derived calculations Version format compliance Data collection Database references Derived calculations 1 0 2005-01-25 1 1 2008-04-30 1 2 2011-07-13 1 3 2024-03-13 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y RCSB Y PDBJ 2004-08-19 REL REL SO4 SULFATE ION TYR TYROSINE HOH water SO4 951 2 SO4 SO4 951 A TYR 1 3 TYR TYR 952 A HOH 601 4 HOH HOH 601 A HOH 602 4 HOH HOH 602 A HOH 603 4 HOH HOH 603 A HOH 604 4 HOH HOH 604 A HOH 605 4 HOH HOH 605 A HOH 606 4 HOH HOH 606 A HOH 607 4 HOH HOH 607 A HOH 608 4 HOH HOH 608 A HOH 609 4 HOH HOH 609 A HOH 610 4 HOH HOH 610 A HOH 611 4 HOH HOH 611 A HOH 612 4 HOH HOH 612 A HOH 613 4 HOH HOH 613 A HOH 614 4 HOH HOH 614 A HOH 615 4 HOH HOH 615 A HOH 616 4 HOH HOH 616 A HOH 617 4 HOH HOH 617 A HOH 618 4 HOH HOH 618 A HOH 619 4 HOH HOH 619 A HOH 620 4 HOH HOH 620 A HOH 621 4 HOH HOH 621 A HOH 622 4 HOH HOH 622 A HOH 623 4 HOH HOH 623 A HOH 624 4 HOH HOH 624 A HOH 625 4 HOH HOH 625 A HOH 626 4 HOH HOH 626 A HOH 627 4 HOH HOH 627 A HOH 628 4 HOH HOH 628 A HOH 629 4 HOH HOH 629 A HOH 630 4 HOH HOH 630 A HOH 631 4 HOH HOH 631 A HOH 632 4 HOH HOH 632 A HOH 633 4 HOH HOH 633 A HOH 634 4 HOH HOH 634 A HOH 635 4 HOH HOH 635 A HOH 636 4 HOH HOH 636 A HOH 637 4 HOH HOH 637 A HOH 638 4 HOH HOH 638 A HOH 639 4 HOH HOH 639 A HOH 640 4 HOH HOH 640 A HOH 641 4 HOH HOH 641 A HOH 642 4 HOH HOH 642 A HOH 643 4 HOH HOH 643 A HOH 644 4 HOH HOH 644 A HOH 645 4 HOH HOH 645 A HOH 646 4 HOH HOH 646 A HOH 647 4 HOH HOH 647 A HOH 648 4 HOH HOH 648 A HOH 649 4 HOH HOH 649 A HOH 650 4 HOH HOH 650 A HOH 651 4 HOH HOH 651 A HOH 652 4 HOH HOH 652 A HOH 653 4 HOH HOH 653 A HOH 654 4 HOH HOH 654 A HOH 655 4 HOH HOH 655 A HOH 656 4 HOH HOH 656 A HOH 657 4 HOH HOH 657 A HOH 658 4 HOH HOH 658 A HOH 659 4 HOH HOH 659 A HOH 660 4 HOH HOH 660 A HOH 661 4 HOH HOH 661 A HOH 662 4 HOH HOH 662 A HOH 663 4 HOH HOH 663 A HOH 664 4 HOH HOH 664 A HOH 665 4 HOH HOH 665 A HOH 667 4 HOH HOH 667 A HOH 668 4 HOH HOH 668 A HOH 669 4 HOH HOH 669 A HOH 670 4 HOH HOH 670 A HOH 671 4 HOH HOH 671 A HOH 672 4 HOH HOH 672 A HOH 673 4 HOH HOH 673 A HOH 674 4 HOH HOH 674 A HOH 675 4 HOH HOH 675 A HOH 676 4 HOH HOH 676 A HOH 677 4 HOH HOH 677 A HOH 678 4 HOH HOH 678 A HOH 679 4 HOH HOH 679 A HOH 681 4 HOH HOH 681 A HOH 682 4 HOH HOH 682 A HOH 683 4 HOH HOH 683 A HOH 684 4 HOH HOH 684 A HOH 686 4 HOH HOH 686 A HOH 687 4 HOH HOH 687 A HOH 688 4 HOH HOH 688 A HOH 689 4 HOH HOH 689 A HOH 690 4 HOH HOH 690 A HOH 691 4 HOH HOH 691 A HOH 692 4 HOH HOH 692 A HOH 693 4 HOH HOH 693 A HOH 694 4 HOH HOH 694 A HOH 695 4 HOH HOH 695 A HOH 696 4 HOH HOH 696 A HOH 697 4 HOH HOH 697 A HOH 698 4 HOH HOH 698 A HOH 699 4 HOH HOH 699 A HOH 700 4 HOH HOH 700 A HOH 701 4 HOH HOH 701 A HOH 702 4 HOH HOH 702 A HOH 703 4 HOH HOH 703 A HOH 705 4 HOH HOH 705 A HOH 706 4 HOH HOH 706 A HOH 707 4 HOH HOH 707 A HOH 709 4 HOH HOH 709 A HOH 710 4 HOH HOH 710 A HOH 711 4 HOH HOH 711 A HOH 713 4 HOH HOH 713 A HOH 714 4 HOH HOH 714 A HOH 715 4 HOH HOH 715 A HOH 716 4 HOH HOH 716 A HOH 717 4 HOH HOH 717 A HOH 719 4 HOH HOH 719 A HOH 720 4 HOH HOH 720 A HOH 721 4 HOH HOH 721 A HOH 722 4 HOH HOH 722 A HOH 724 4 HOH HOH 724 A HOH 725 4 HOH HOH 725 A HOH 726 4 HOH HOH 726 A HOH 728 4 HOH HOH 728 A HOH 729 4 HOH HOH 729 A HOH 730 4 HOH HOH 730 A HOH 731 4 HOH HOH 731 A HOH 733 4 HOH HOH 733 A HOH 735 4 HOH HOH 735 A HOH 736 4 HOH HOH 736 A HOH 738 4 HOH HOH 738 A HOH 739 4 HOH HOH 739 A HOH 740 4 HOH HOH 740 A HOH 741 4 HOH HOH 741 A HOH 742 4 HOH HOH 742 A HOH 746 4 HOH HOH 746 A HOH 747 4 HOH HOH 747 A HOH 749 4 HOH HOH 749 A HOH 753 4 HOH HOH 753 A HOH 755 4 HOH HOH 755 A HOH 756 4 HOH HOH 756 A HOH 757 4 HOH HOH 757 A HOH 761 4 HOH HOH 761 A HOH 763 4 HOH HOH 763 A HOH 764 4 HOH HOH 764 A HOH 766 4 HOH HOH 766 A HOH 770 4 HOH HOH 770 A HOH 771 4 HOH HOH 771 A HOH 772 4 HOH HOH 772 A HOH 773 4 HOH HOH 773 A HOH 775 4 HOH HOH 775 A HOH 776 4 HOH HOH 776 A HOH 778 4 HOH HOH 778 A HOH 784 4 HOH HOH 784 A HOH 785 4 HOH HOH 785 A HOH 791 4 HOH HOH 791 A HOH 804 4 HOH HOH 804 A HOH 806 4 HOH HOH 806 A HOH 817 4 HOH HOH 817 A HOH 822 4 HOH HOH 822 A HOH 823 4 HOH HOH 823 A HOH 827 4 HOH HOH 827 A HOH 828 4 HOH HOH 828 A HOH 829 4 HOH HOH 829 A HOH 830 4 HOH HOH 830 A HOH 831 4 HOH HOH 831 A HOH 832 4 HOH HOH 832 A HOH 833 4 HOH HOH 833 A HOH 834 4 HOH HOH 834 A HOH 835 4 HOH HOH 835 A HOH 836 4 HOH HOH 836 A HOH 837 4 HOH HOH 837 A HOH 838 4 HOH HOH 838 A HOH 839 4 HOH HOH 839 A HOH 840 4 HOH HOH 840 A HOH 841 4 HOH HOH 841 A HOH 842 4 HOH HOH 842 A HOH 843 4 HOH HOH 843 A HOH 844 4 HOH HOH 844 A HOH 845 4 HOH HOH 845 A HOH 846 4 HOH HOH 846 A HOH 847 4 HOH HOH 847 A HOH 848 4 HOH HOH 848 A HOH 849 4 HOH HOH 849 A HOH 850 4 HOH HOH 850 A HOH 851 4 HOH HOH 851 A HOH 852 4 HOH HOH 852 A HOH 853 4 HOH HOH 853 A HOH 854 4 HOH HOH 854 A HOH 855 4 HOH HOH 855 A HOH 856 4 HOH HOH 856 A HOH 857 4 HOH HOH 857 A HOH 858 4 HOH HOH 858 A HOH 859 4 HOH HOH 859 A HOH 860 4 HOH HOH 860 A HOH 861 4 HOH HOH 861 A HOH 862 4 HOH HOH 862 A HOH 863 4 HOH HOH 863 A HOH 864 4 HOH HOH 864 A HOH 865 4 HOH HOH 865 A HOH 866 4 HOH HOH 866 A HOH 867 4 HOH HOH 867 A HOH 868 4 HOH HOH 868 A HOH 869 4 HOH HOH 869 A HOH 870 4 HOH HOH 870 A HOH 871 4 HOH HOH 871 A HOH 872 4 HOH HOH 872 A HOH 873 4 HOH HOH 873 A HOH 874 4 HOH HOH 874 A HOH 875 4 HOH HOH 875 A HOH 876 4 HOH HOH 876 A HOH 877 4 HOH HOH 877 A HOH 878 4 HOH HOH 878 A HOH 879 4 HOH HOH 879 A HOH 880 4 HOH HOH 880 A HOH 881 4 HOH HOH 881 A HOH 882 4 HOH HOH 882 A HOH 883 4 HOH HOH 883 A HOH 884 4 HOH HOH 884 A HOH 885 4 HOH HOH 885 A HOH 886 4 HOH HOH 886 A HOH 887 4 HOH HOH 887 A HOH 888 4 HOH HOH 888 A MET 1 n 1 MET 1 A ALA 2 n 2 ALA 2 A SER 3 n 3 SER 3 A SER 4 n 4 SER 4 A ASN 5 n 5 ASN 5 A LEU 6 n 6 LEU 6 A ILE 7 n 7 ILE 7 A LYS 8 n 8 LYS 8 A GLN 9 n 9 GLN 9 A LEU 10 n 10 LEU 10 A GLN 11 n 11 GLN 11 A GLU 12 n 12 GLU 12 A ARG 13 n 13 ARG 13 A GLY 14 n 14 GLY 14 A LEU 15 n 15 LEU 15 A VAL 16 n 16 VAL 16 A ALA 17 n 17 ALA 17 A GLN 18 n 18 GLN 18 A VAL 19 n 19 VAL 19 A THR 20 n 20 THR 20 A ASP 21 n 21 ASP 21 A GLU 22 n 22 GLU 22 A GLU 23 n 23 GLU 23 A ALA 24 n 24 ALA 24 A LEU 25 n 25 LEU 25 A ALA 26 n 26 ALA 26 A GLU 27 n 27 GLU 27 A ARG 28 n 28 ARG 28 A LEU 29 n 29 LEU 29 A ALA 30 n 30 ALA 30 A GLN 31 n 31 GLN 31 A GLY 32 n 32 GLY 32 A PRO 33 n 33 PRO 33 A ILE 34 n 34 ILE 34 A ALA 35 n 35 ALA 35 A LEU 36 n 36 LEU 36 A TYR 37 n 37 TYR 37 A CYS 38 n 38 CYS 38 A GLY 39 n 39 GLY 39 A PHE 40 n 40 PHE 40 A ASP 41 n 41 ASP 41 A PRO 42 n 42 PRO 42 A THR 43 n 43 THR 43 A ALA 44 n 44 ALA 44 A ASP 45 n 45 ASP 45 A SER 46 n 46 SER 46 A LEU 47 n 47 LEU 47 A HIS 48 n 48 HIS 48 A LEU 49 n 49 LEU 49 A GLY 50 n 50 GLY 50 A HIS 51 n 51 HIS 51 A LEU 52 n 52 LEU 52 A VAL 53 n 53 VAL 53 A PRO 54 n 54 PRO 54 A LEU 55 n 55 LEU 55 A LEU 56 n 56 LEU 56 A CYS 57 n 57 CYS 57 A LEU 58 n 58 LEU 58 A LYS 59 n 59 LYS 59 A ARG 60 n 60 ARG 60 A PHE 61 n 61 PHE 61 A GLN 62 n 62 GLN 62 A GLN 63 n 63 GLN 63 A ALA 64 n 64 ALA 64 A GLY 65 n 65 GLY 65 A HIS 66 n 66 HIS 66 A LYS 67 n 67 LYS 67 A PRO 68 n 68 PRO 68 A VAL 69 n 69 VAL 69 A ALA 70 n 70 ALA 70 A LEU 71 n 71 LEU 71 A VAL 72 n 72 VAL 72 A GLY 73 n 73 GLY 73 A GLY 74 n 74 GLY 74 A ALA 75 n 75 ALA 75 A THR 76 n 76 THR 76 A GLY 77 n 77 GLY 77 A LEU 78 n 78 LEU 78 A ILE 79 n 79 ILE 79 A GLY 80 n 80 GLY 80 A ASP 81 n 81 ASP 81 A PRO 82 n 82 PRO 82 A SER 83 n 83 SER 83 A PHE 84 n 84 PHE 84 A LYS 85 n 85 LYS 85 A ALA 86 n 86 ALA 86 A ALA 87 n 87 ALA 87 A GLU 88 n 88 GLU 88 A ARG 89 n 89 ARG 89 A LYS 90 n 90 LYS 90 A LEU 91 n 91 LEU 91 A ASN 92 n 92 ASN 92 A THR 93 n 93 THR 93 A GLU 94 n 94 GLU 94 A GLU 95 n 95 GLU 95 A THR 96 n 96 THR 96 A VAL 97 n 97 VAL 97 A GLN 98 n 98 GLN 98 A GLU 99 n 99 GLU 99 A TRP 100 n 100 TRP 100 A VAL 101 n 101 VAL 101 A ASP 102 n 102 ASP 102 A LYS 103 n 103 LYS 103 A ILE 104 n 104 ILE 104 A ARG 105 n 105 ARG 105 A LYS 106 n 106 LYS 106 A GLN 107 n 107 GLN 107 A VAL 108 n 108 VAL 108 A ALA 109 n 109 ALA 109 A PRO 110 n 110 PRO 110 A PHE 111 n 111 PHE 111 A LEU 112 n 112 LEU 112 A ASP 113 n 113 ASP 113 A PHE 114 n 114 PHE 114 A ASP 115 n 115 ASP 115 A CYS 116 n 116 CYS 116 A GLY 117 n 117 GLY 117 A GLU 118 n 118 GLU 118 A ASN 119 n 119 ASN 119 A SER 120 n 120 SER 120 A ALA 121 n 121 ALA 121 A ILE 122 n 122 ILE 122 A ALA 123 n 123 ALA 123 A ALA 124 n 124 ALA 124 A ASN 125 n 125 ASN 125 A ASN 126 n 126 ASN 126 A TYR 127 n 127 TYR 127 A ASP 128 n 128 ASP 128 A TRP 129 n 129 TRP 129 A PHE 130 n 130 PHE 130 A GLY 131 n 131 GLY 131 A ASN 132 n 132 ASN 132 A MET 133 n 133 MET 133 A ASN 134 n 134 ASN 134 A VAL 135 n 135 VAL 135 A LEU 136 n 136 LEU 136 A THR 137 n 137 THR 137 A PHE 138 n 138 PHE 138 A LEU 139 n 139 LEU 139 A ARG 140 n 140 ARG 140 A ASP 141 n 141 ASP 141 A ILE 142 n 142 ILE 142 A GLY 143 n 143 GLY 143 A LYS 144 n 144 LYS 144 A HIS 145 n 145 HIS 145 A PHE 146 n 146 PHE 146 A SER 147 n 147 SER 147 A VAL 148 n 148 VAL 148 A ASN 149 n 149 ASN 149 A GLN 150 n 150 GLN 150 A MET 151 n 151 MET 151 A ILE 152 n 152 ILE 152 A ASN 153 n 153 ASN 153 A LYS 154 n 154 LYS 154 A GLU 155 n 155 GLU 155 A ALA 156 n 156 ALA 156 A VAL 157 n 157 VAL 157 A LYS 158 n 158 LYS 158 A GLN 159 n 159 GLN 159 A ARG 160 n 160 ARG 160 A LEU 161 n 161 LEU 161 A ASN 162 n 162 ASN 162 A ARG 163 n 163 ARG 163 A GLU 164 n 164 GLU 164 A ASP 165 n 165 ASP 165 A GLN 166 n 166 GLN 166 A GLY 167 n 167 GLY 167 A ILE 168 n 168 ILE 168 A SER 169 n 169 SER 169 A PHE 170 n 170 PHE 170 A THR 171 n 171 THR 171 A GLU 172 n 172 GLU 172 A PHE 173 n 173 PHE 173 A SER 174 n 174 SER 174 A TYR 175 n 175 TYR 175 A ASN 176 n 176 ASN 176 A LEU 177 n 177 LEU 177 A LEU 178 n 178 LEU 178 A GLN 179 n 179 GLN 179 A GLY 180 n 180 GLY 180 A TYR 181 n 181 TYR 181 A ASP 182 n 182 ASP 182 A PHE 183 n 183 PHE 183 A ALA 184 n 184 ALA 184 A CYS 185 n 185 CYS 185 A LEU 186 n 186 LEU 186 A ASN 187 n 187 ASN 187 A LYS 188 n 188 LYS 188 A GLN 189 n 189 GLN 189 A TYR 190 n 190 TYR 190 A GLY 191 n 191 GLY 191 A VAL 192 n 192 VAL 192 A VAL 193 n 193 VAL 193 A LEU 194 n 194 LEU 194 A GLN 195 n 195 GLN 195 A ILE 196 n 196 ILE 196 A GLY 197 n 197 GLY 197 A GLY 198 n 198 GLY 198 A SER 199 n 199 SER 199 A ASP 200 n 200 ASP 200 A GLN 201 n 201 GLN 201 A TRP 202 n 202 TRP 202 A GLY 203 n 203 GLY 203 A ASN 204 n 204 ASN 204 A ILE 205 n 205 ILE 205 A THR 206 n 206 THR 206 A SER 207 n 207 SER 207 A GLY 208 n 208 GLY 208 A ILE 209 n 209 ILE 209 A ASP 210 n 210 ASP 210 A LEU 211 n 211 LEU 211 A THR 212 n 212 THR 212 A ARG 213 n 213 ARG 213 A ARG 214 n 214 ARG 214 A LEU 215 n 215 LEU 215 A HIS 216 n 216 HIS 216 A GLN 217 n 217 GLN 217 A ASN 218 n 218 ASN 218 A GLN 219 n 219 GLN 219 A VAL 220 n 220 VAL 220 A PHE 221 n 221 PHE 221 A GLY 222 n 222 GLY 222 A LEU 223 n 223 LEU 223 A THR 224 n 224 THR 224 A VAL 225 n 225 VAL 225 A PRO 226 n 226 PRO 226 A LEU 227 n 227 LEU 227 A ILE 228 n 228 ILE 228 A THR 229 n 229 THR 229 A LYS 230 n 230 LYS 230 A ALA 231 n 231 ALA 231 A ASP 232 n 232 ASP 232 A GLY 233 n 233 GLY 233 A THR 234 n 234 THR 234 A LYS 235 n 235 LYS 235 A PHE 236 n 236 PHE 236 A GLY 237 n 237 GLY 237 A LYS 238 n 238 LYS 238 A THR 239 n 239 THR 239 A GLU 240 n 240 GLU 240 A GLY 241 n 241 GLY 241 A GLY 242 n 242 GLY 242 A ALA 243 n 243 ALA 243 A VAL 244 n 244 VAL 244 A TRP 245 n 245 TRP 245 A LEU 246 n 246 LEU 246 A ASP 247 n 247 ASP 247 A PRO 248 n 248 PRO 248 A LYS 249 n 249 LYS 249 A LYS 250 n 250 LYS 250 A THR 251 n 251 THR 251 A SER 252 n 252 SER 252 A PRO 253 n 253 PRO 253 A TYR 254 n 254 TYR 254 A LYS 255 n 255 LYS 255 A PHE 256 n 256 PHE 256 A TYR 257 n 257 TYR 257 A GLN 258 n 258 GLN 258 A PHE 259 n 259 PHE 259 A TRP 260 n 260 TRP 260 A ILE 261 n 261 ILE 261 A ASN 262 n 262 ASN 262 A THR 263 n 263 THR 263 A ALA 264 n 264 ALA 264 A ASP 265 n 265 ASP 265 A ALA 266 n 266 ALA 266 A ASP 267 n 267 ASP 267 A VAL 268 n 268 VAL 268 A TYR 269 n 269 TYR 269 A ARG 270 n 270 ARG 270 A PHE 271 n 271 PHE 271 A LEU 272 n 272 LEU 272 A LYS 273 n 273 LYS 273 A PHE 274 n 274 PHE 274 A PHE 275 n 275 PHE 275 A THR 276 n 276 THR 276 A PHE 277 n 277 PHE 277 A MET 278 n 278 MET 278 A SER 279 n 279 SER 279 A ILE 280 n 280 ILE 280 A GLU 281 n 281 GLU 281 A GLU 282 n 282 GLU 282 A ILE 283 n 283 ILE 283 A ASN 284 n 284 ASN 284 A ALA 285 n 285 ALA 285 A LEU 286 n 286 LEU 286 A GLU 287 n 287 GLU 287 A GLU 288 n 288 GLU 288 A GLU 289 n 289 GLU 289 A ASP 290 n 290 ASP 290 A LYS 291 n 291 LYS 291 A ASN 292 n 292 ASN 292 A SER 293 n 293 SER 293 A GLY 294 n 294 GLY 294 A LYS 295 n 295 LYS 295 A ALA 296 n 296 ALA 296 A PRO 297 n 297 PRO 297 A ARG 298 n 298 ARG 298 A ALA 299 n 299 ALA 299 A GLN 300 n 300 GLN 300 A TYR 301 n 301 TYR 301 A VAL 302 n 302 VAL 302 A LEU 303 n 303 LEU 303 A ALA 304 n 304 ALA 304 A GLU 305 n 305 GLU 305 A GLN 306 n 306 GLN 306 A VAL 307 n 307 VAL 307 A THR 308 n 308 THR 308 A ARG 309 n 309 ARG 309 A LEU 310 n 310 LEU 310 A VAL 311 n 311 VAL 311 A HIS 312 n 312 HIS 312 A GLY 313 n 313 GLY 313 A GLU 314 n 314 GLU 314 A GLU 315 n 315 GLU 315 A GLY 316 n 316 GLY 316 A LEU 317 n 317 LEU 317 A GLN 318 n 318 GLN 318 A ALA 319 n 319 ALA 319 A ALA 320 n 320 ALA 320 A LYS 321 n 321 LYS 321 A ARG 322 n 322 ARG 322 A author_and_software_defined_assembly PISA 2 dimeric software_defined_assembly PQS 1 monomeric 3370 -46 28180 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 0.8660254038 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 4_555 y,x,-z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 A N GLN 18 A N GLN 18 A O THR 224 A O THR 224 A O PHE 221 A O PHE 221 A N VAL 193 A N VAL 193 A O ILE 196 A O ILE 196 A N TYR 37 A N TYR 37 A N LEU 36 A N LEU 36 A O LYS 67 A O LYS 67 A N VAL 72 A N VAL 72 A O ALA 124 A O ALA 124 A N THR 239 A N THR 239 A O GLY 242 A O GLY 242 PROTEIN_REP.PARAM PROTEIN.TOP WATER_REP.PARM WATER.TOP ION.PARAM ION.TOP 23.7 3.02 2.57 0.00 3.02 0.00 -6.05 0.22 0.004 0.191 0.195 0.194 2.00 41.41 2493 25509 25334 9.8 99.0 RANDOM 1727040.11 0.000000 1 RESTRAINED THROUGHOUT 2.0 MOLECULAR REPLACEMENT Engh & Huber FLAT MODEL 46.425 0.373567 0.25 0.20 5.00 0.09 -0.03 2.00 41.41 218 2780 18 0 2544 0.004 1.1 21.3 0.70 1.33 1.50 1.91 2.00 2.25 2.00 3.36 2.50 0.216 0.011 0.179 2.13 394 3736 4130 6 9.5 98.7 14.2 2.00 71.726 1X8X 25571 25543 0 0 0.056 1 8.7 4.2 99.9 2.00 2.11 3.9 3686 0.171 1 4.2 100 refinement CNX 2002 data reduction MOSFLM data scaling CCP4 (SCALA) phasing CNX 2002 Tyrosyl t-RNA Synthetase from E.coli Complexed with Tyrosine 1 N N 2 N N 3 N N 4 N N The second part of the biological assembly is generated by the two fold axis: +y, +x, -z A ASN 5 A ASN 5 HELX_P A ARG 13 A ARG 13 1 1 9 A ASP 21 A ASP 21 HELX_P A GLY 32 A GLY 32 1 2 12 A HIS 48 A HIS 48 HELX_P A ALA 64 A ALA 64 1 3 17 A ALA 75 A ALA 75 HELX_P A ILE 79 A ILE 79 5 4 5 A THR 93 A THR 93 HELX_P A ALA 109 A ALA 109 1 5 17 A PRO 110 A PRO 110 HELX_P A LEU 112 A LEU 112 5 6 3 A CYS 116 A CYS 116 HELX_P A SER 120 A SER 120 5 7 5 A ASN 126 A ASN 126 HELX_P A GLY 131 A GLY 131 1 8 6 A ASN 134 A ASN 134 HELX_P A ILE 142 A ILE 142 1 9 9 A GLY 143 A GLY 143 HELX_P A PHE 146 A PHE 146 5 10 4 A SER 147 A SER 147 HELX_P A ASN 153 A ASN 153 1 11 7 A LYS 154 A LYS 154 HELX_P A ARG 163 A ARG 163 1 12 10 A SER 169 A SER 169 HELX_P A SER 174 A SER 174 1 13 6 A SER 174 A SER 174 HELX_P A GLY 191 A GLY 191 1 14 18 A GLY 198 A GLY 198 HELX_P A ASP 200 A ASP 200 5 15 3 A GLN 201 A GLN 201 HELX_P A GLN 217 A GLN 217 1 16 17 A SER 252 A SER 252 HELX_P A ASN 262 A ASN 262 1 17 11 A ALA 264 A ALA 264 HELX_P A THR 276 A THR 276 1 18 13 A SER 279 A SER 279 HELX_P A GLY 294 A GLY 294 1 19 16 A ARG 298 A ARG 298 HELX_P A ALA 320 A ALA 320 1 20 23 LIGASE LIGASE, RIKEN Structural Genomics/Proteomics Initiative, RSGI, Structural Genomics SYY_ECOLI UNP 1 1 P00951 ASSNLIKQLQERGLVAQVTDEEALAERLAQGPIALYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGD PSFKAAERKLNTEETVQEWVDKIRKQVAPFLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRL NREDQGISFTEFSYNLLQGYDFACLNKQYGVVLQIGGSDQWGNITSGIDLTRRLHQNQVFGLTVPLITKADGTKFGKTEG GAVWLDPKKTSPYKFYQFWINTADADVYRFLKFFTFMSIEEINALEEEDKNSGKAPRAQYVLAEQVTRLVHGEEGLQAAK RITECLFSGSLSALSEADFEQLAQDGVPMVEMEKGADLMQALVDSELQPSRGQARKTIASNAITINGEKQSDPEYFFKEE DRLFGRFTLLRRGKKNYCLICWK 1 321 1X8X 2 322 P00951 A 1 2 322 1 initiating methionine MET 1 1X8X A P00951 UNP 1 6 2 anti-parallel parallel parallel parallel parallel anti-parallel A GLN 18 A GLN 18 A VAL 19 A VAL 19 A PHE 221 A PHE 221 A THR 224 A THR 224 A VAL 192 A VAL 192 A GLY 197 A GLY 197 A ALA 35 A ALA 35 A PHE 40 A PHE 40 A LYS 67 A LYS 67 A VAL 72 A VAL 72 A ILE 122 A ILE 122 A ASN 125 A ASN 125 A LYS 238 A LYS 238 A THR 239 A THR 239 A GLY 242 A GLY 242 A ALA 243 A ALA 243 BINDING SITE FOR RESIDUE SO4 A 951 A SO4 951 Software 6 BINDING SITE FOR RESIDUE TYR A 952 A TYR 952 Software 15 A THR 43 A THR 43 6 1_555 A HIS 48 A HIS 48 6 1_555 A HIS 51 A HIS 51 6 1_555 A LYS 85 A LYS 85 6 1_555 A ARG 89 A ARG 89 6 1_555 A HOH 832 D HOH 6 1_555 A TYR 37 A TYR 37 15 1_555 A GLY 39 A GLY 39 15 1_555 A ASP 41 A ASP 41 15 1_555 A ASP 81 A ASP 81 15 1_555 A TYR 175 A TYR 175 15 1_555 A GLN 179 A GLN 179 15 1_555 A ASP 182 A ASP 182 15 1_555 A GLN 195 A GLN 195 15 1_555 A GLN 201 A GLN 201 15 1_555 A HOH 648 D HOH 15 1_555 A HOH 653 D HOH 15 1_555 A HOH 658 D HOH 15 1_555 A HOH 665 D HOH 15 1_555 A HOH 715 D HOH 15 1_555 A HOH 869 D HOH 15 1_555 152 P 31 2 1