0.017928 0.000000 0.000000 0.000000 0.008055 0.000000 0.000000 0.000000 0.007716 0.00000 0.00000 0.00000 Scott, P.G. McEwan, P.A. Dodd, C.M. Bergmann, E.M. Bishop, P.N. Bella, J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 55.780 124.145 129.609 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C8 H15 N O6 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose D-saccharide, beta linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C4 H12 N O3 1 122.143 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL TRIS BUFFER non-polymer C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Proc.Natl.Acad.Sci.Usa PNASA6 0040 0027-8424 101 15633 15638 10.1073/pnas.0402976101 15501918 Crystal structure of the dimeric protein core of decorin, the archetypal small leucine-rich repeat proteoglycan 2004 US J.Biol.Chem. JBCHA3 0071 0021-9258 278 18353 18359 10.1074/jbc.M211936200 12601001 Light and X-ray scattering show decorin to be a dimer in solution 2003 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 IMAGE PLATE 2002-01-25 RIGAKU RAXIS IV Osmic SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RUH3R 36512.938 Decorin 1 man polymer 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose 3 man non-polymer 122.143 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 1 syn non-polymer 18.015 water 164 nat water Bone proteoglycan II, PG-S2 no no DEASGIGPEEHFPEVPEIEPMGPVCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHT LILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS GIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP HLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV RAAVQLGNYK DEASGIGPEEHFPEVPEIEPMGPVCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHT LILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS GIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP HLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV RAAVQLGNYK A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n cattle Bos human Homo sample DCN 9913 Bos taurus HEK 293A 9606 Homo sapiens Adenovirus 1 3.31 62.57 VAPOR DIFFUSION, HANGING DROP 7.75 PEG 400, TRIS, OCTYL-BETA-D-GLUCOPYRANOSIDE, SODIUM AZIDE, pH 7.75, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 chem_comp entity pdbx_chem_comp_identifier pdbx_entity_nonpoly struct_conn struct_site struct_site_gen repository Initial release Carbohydrate remediation repository Remediation Version format compliance Advisory Version format compliance Data collection Derived calculations Structure summary 1 0 2004-11-02 1 1 2008-04-30 1 2 2011-07-13 1 3 2020-07-29 _chem_comp.name _chem_comp.type _entity.pdbx_description _pdbx_entity_nonpoly.name _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_role DGlcpNAcb N-acetyl-b-D-glucopyranosamine b-D-GlcpNAc GlcNAc Dimeric bovine tissue-extracted decorin, crystal form 1 Dimeric bovine tissue-extracted decorin, crystal form 2 RCSB Y PDBJ 2004-09-29 REL REL NAG 2-acetamido-2-deoxy-beta-D-glucopyranose TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HOH water NAG 800 2 NAG NAG 800 A NAG 801 2 NAG NAG 801 A NAG 802 2 NAG NAG 802 A TMN 968 3 TRS TRS 968 A HOH 803 4 HOH HOH 803 A HOH 804 4 HOH HOH 804 A HOH 805 4 HOH HOH 805 A HOH 806 4 HOH HOH 806 A HOH 807 4 HOH HOH 807 A HOH 808 4 HOH HOH 808 A HOH 809 4 HOH HOH 809 A HOH 810 4 HOH HOH 810 A HOH 811 4 HOH HOH 811 A HOH 812 4 HOH HOH 812 A HOH 813 4 HOH HOH 813 A HOH 814 4 HOH HOH 814 A HOH 815 4 HOH HOH 815 A HOH 816 4 HOH HOH 816 A HOH 817 4 HOH HOH 817 A HOH 818 4 HOH HOH 818 A HOH 819 4 HOH HOH 819 A HOH 820 4 HOH HOH 820 A HOH 821 4 HOH HOH 821 A HOH 822 4 HOH HOH 822 A HOH 823 4 HOH HOH 823 A HOH 824 4 HOH HOH 824 A HOH 825 4 HOH HOH 825 A HOH 826 4 HOH HOH 826 A HOH 827 4 HOH HOH 827 A HOH 828 4 HOH HOH 828 A HOH 829 4 HOH HOH 829 A HOH 830 4 HOH HOH 830 A HOH 831 4 HOH HOH 831 A HOH 832 4 HOH HOH 832 A HOH 833 4 HOH HOH 833 A HOH 834 4 HOH HOH 834 A HOH 835 4 HOH HOH 835 A HOH 836 4 HOH HOH 836 A HOH 837 4 HOH HOH 837 A HOH 838 4 HOH HOH 838 A HOH 839 4 HOH HOH 839 A HOH 840 4 HOH HOH 840 A HOH 841 4 HOH HOH 841 A HOH 842 4 HOH HOH 842 A HOH 843 4 HOH HOH 843 A HOH 844 4 HOH HOH 844 A HOH 845 4 HOH HOH 845 A HOH 846 4 HOH HOH 846 A HOH 847 4 HOH HOH 847 A HOH 848 4 HOH HOH 848 A HOH 849 4 HOH HOH 849 A HOH 850 4 HOH HOH 850 A HOH 851 4 HOH HOH 851 A HOH 852 4 HOH HOH 852 A HOH 853 4 HOH HOH 853 A HOH 854 4 HOH HOH 854 A HOH 855 4 HOH HOH 855 A HOH 856 4 HOH HOH 856 A HOH 857 4 HOH HOH 857 A HOH 858 4 HOH HOH 858 A HOH 859 4 HOH HOH 859 A HOH 860 4 HOH HOH 860 A HOH 861 4 HOH HOH 861 A HOH 862 4 HOH HOH 862 A HOH 863 4 HOH HOH 863 A HOH 864 4 HOH HOH 864 A HOH 865 4 HOH HOH 865 A HOH 866 4 HOH HOH 866 A HOH 867 4 HOH HOH 867 A HOH 868 4 HOH HOH 868 A HOH 869 4 HOH HOH 869 A HOH 870 4 HOH HOH 870 A HOH 871 4 HOH HOH 871 A HOH 872 4 HOH HOH 872 A HOH 873 4 HOH HOH 873 A HOH 874 4 HOH HOH 874 A HOH 875 4 HOH HOH 875 A HOH 876 4 HOH HOH 876 A HOH 877 4 HOH HOH 877 A HOH 878 4 HOH HOH 878 A HOH 879 4 HOH HOH 879 A HOH 880 4 HOH HOH 880 A HOH 881 4 HOH HOH 881 A HOH 882 4 HOH HOH 882 A HOH 883 4 HOH HOH 883 A HOH 884 4 HOH HOH 884 A HOH 885 4 HOH HOH 885 A HOH 886 4 HOH HOH 886 A HOH 887 4 HOH HOH 887 A HOH 888 4 HOH HOH 888 A HOH 889 4 HOH HOH 889 A HOH 890 4 HOH HOH 890 A HOH 891 4 HOH HOH 891 A HOH 892 4 HOH HOH 892 A HOH 893 4 HOH HOH 893 A HOH 894 4 HOH HOH 894 A HOH 895 4 HOH HOH 895 A HOH 896 4 HOH HOH 896 A HOH 897 4 HOH HOH 897 A HOH 898 4 HOH HOH 898 A HOH 899 4 HOH HOH 899 A HOH 900 4 HOH HOH 900 A HOH 901 4 HOH HOH 901 A HOH 902 4 HOH HOH 902 A HOH 903 4 HOH HOH 903 A HOH 904 4 HOH HOH 904 A HOH 905 4 HOH HOH 905 A HOH 906 4 HOH HOH 906 A HOH 907 4 HOH HOH 907 A HOH 908 4 HOH HOH 908 A HOH 909 4 HOH HOH 909 A HOH 910 4 HOH HOH 910 A HOH 911 4 HOH HOH 911 A HOH 912 4 HOH HOH 912 A HOH 913 4 HOH HOH 913 A HOH 914 4 HOH HOH 914 A HOH 915 4 HOH HOH 915 A HOH 916 4 HOH HOH 916 A HOH 917 4 HOH HOH 917 A HOH 918 4 HOH HOH 918 A HOH 919 4 HOH HOH 919 A HOH 920 4 HOH HOH 920 A HOH 921 4 HOH HOH 921 A HOH 922 4 HOH HOH 922 A HOH 923 4 HOH HOH 923 A HOH 924 4 HOH HOH 924 A HOH 925 4 HOH HOH 925 A HOH 926 4 HOH HOH 926 A HOH 927 4 HOH HOH 927 A HOH 928 4 HOH HOH 928 A HOH 929 4 HOH HOH 929 A HOH 930 4 HOH HOH 930 A HOH 931 4 HOH HOH 931 A HOH 932 4 HOH HOH 932 A HOH 933 4 HOH HOH 933 A HOH 934 4 HOH HOH 934 A HOH 935 4 HOH HOH 935 A HOH 936 4 HOH HOH 936 A HOH 937 4 HOH HOH 937 A HOH 938 4 HOH HOH 938 A HOH 939 4 HOH HOH 939 A HOH 940 4 HOH HOH 940 A HOH 941 4 HOH HOH 941 A HOH 942 4 HOH HOH 942 A HOH 943 4 HOH HOH 943 A HOH 944 4 HOH HOH 944 A HOH 945 4 HOH HOH 945 A HOH 946 4 HOH HOH 946 A HOH 947 4 HOH HOH 947 A HOH 948 4 HOH HOH 948 A HOH 949 4 HOH HOH 949 A HOH 950 4 HOH HOH 950 A HOH 951 4 HOH HOH 951 A HOH 952 4 HOH HOH 952 A HOH 953 4 HOH HOH 953 A HOH 954 4 HOH HOH 954 A HOH 955 4 HOH HOH 955 A HOH 956 4 HOH HOH 956 A HOH 957 4 HOH HOH 957 A HOH 958 4 HOH HOH 958 A HOH 959 4 HOH HOH 959 A HOH 960 4 HOH HOH 960 A HOH 961 4 HOH HOH 961 A HOH 962 4 HOH HOH 962 A HOH 963 4 HOH HOH 963 A HOH 964 4 HOH HOH 964 A HOH 965 4 HOH HOH 965 A HOH 966 4 HOH HOH 966 A n 1 1 A n 2 2 A n 3 3 A n 4 4 A n 5 5 A n 6 6 A n 7 7 A n 8 8 A n 9 9 A n 10 10 A n 11 11 A n 12 12 A n 13 13 A n 14 14 A n 15 15 A n 16 16 A n 17 17 A n 18 18 A n 19 19 A n 20 20 A n 21 21 A GLY 22 n 22 GLY 22 A PRO 23 n 23 PRO 23 A VAL 24 n 24 VAL 24 A CYS 25 n 25 CYS 25 A PRO 26 n 26 PRO 26 A PHE 27 n 27 PHE 27 A ARG 28 n 28 ARG 28 A CYS 29 n 29 CYS 29 A GLN 30 n 30 GLN 30 A CYS 31 n 31 CYS 31 A HIS 32 n 32 HIS 32 A LEU 33 n 33 LEU 33 A ARG 34 n 34 ARG 34 A VAL 35 n 35 VAL 35 A VAL 36 n 36 VAL 36 A GLN 37 n 37 GLN 37 A CYS 38 n 38 CYS 38 A SER 39 n 39 SER 39 A ASP 40 n 40 ASP 40 A LEU 41 n 41 LEU 41 A GLY 42 n 42 GLY 42 A LEU 43 n 43 LEU 43 A GLU 44 n 44 GLU 44 A LYS 45 n 45 LYS 45 A VAL 46 n 46 VAL 46 A PRO 47 n 47 PRO 47 A LYS 48 n 48 LYS 48 A ASP 49 n 49 ASP 49 A LEU 50 n 50 LEU 50 A PRO 51 n 51 PRO 51 A PRO 52 n 52 PRO 52 A ASP 53 n 53 ASP 53 A THR 54 n 54 THR 54 A ALA 55 n 55 ALA 55 A LEU 56 n 56 LEU 56 A LEU 57 n 57 LEU 57 A ASP 58 n 58 ASP 58 A LEU 59 n 59 LEU 59 A GLN 60 n 60 GLN 60 A ASN 61 n 61 ASN 61 A ASN 62 n 62 ASN 62 A LYS 63 n 63 LYS 63 A ILE 64 n 64 ILE 64 A THR 65 n 65 THR 65 A GLU 66 n 66 GLU 66 A ILE 67 n 67 ILE 67 A LYS 68 n 68 LYS 68 A ASP 69 n 69 ASP 69 A GLY 70 n 70 GLY 70 A ASP 71 n 71 ASP 71 A PHE 72 n 72 PHE 72 A LYS 73 n 73 LYS 73 A ASN 74 n 74 ASN 74 A LEU 75 n 75 LEU 75 A LYS 76 n 76 LYS 76 A ASN 77 n 77 ASN 77 A LEU 78 n 78 LEU 78 A HIS 79 n 79 HIS 79 A THR 80 n 80 THR 80 A LEU 81 n 81 LEU 81 A ILE 82 n 82 ILE 82 A LEU 83 n 83 LEU 83 A ILE 84 n 84 ILE 84 A ASN 85 n 85 ASN 85 A ASN 86 n 86 ASN 86 A LYS 87 n 87 LYS 87 A ILE 88 n 88 ILE 88 A SER 89 n 89 SER 89 A LYS 90 n 90 LYS 90 A ILE 91 n 91 ILE 91 A SER 92 n 92 SER 92 A PRO 93 n 93 PRO 93 A GLY 94 n 94 GLY 94 A ALA 95 n 95 ALA 95 A PHE 96 n 96 PHE 96 A ALA 97 n 97 ALA 97 A PRO 98 n 98 PRO 98 A LEU 99 n 99 LEU 99 A VAL 100 n 100 VAL 100 A LYS 101 n 101 LYS 101 A LEU 102 n 102 LEU 102 A GLU 103 n 103 GLU 103 A ARG 104 n 104 ARG 104 A LEU 105 n 105 LEU 105 A TYR 106 n 106 TYR 106 A LEU 107 n 107 LEU 107 A SER 108 n 108 SER 108 A LYS 109 n 109 LYS 109 A ASN 110 n 110 ASN 110 A GLN 111 n 111 GLN 111 A LEU 112 n 112 LEU 112 A LYS 113 n 113 LYS 113 A GLU 114 n 114 GLU 114 A LEU 115 n 115 LEU 115 A PRO 116 n 116 PRO 116 A GLU 117 n 117 GLU 117 A LYS 118 n 118 LYS 118 A MET 119 n 119 MET 119 A PRO 120 n 120 PRO 120 A LYS 121 n 121 LYS 121 A THR 122 n 122 THR 122 A LEU 123 n 123 LEU 123 A GLN 124 n 124 GLN 124 A GLU 125 n 125 GLU 125 A LEU 126 n 126 LEU 126 A ARG 127 n 127 ARG 127 A VAL 128 n 128 VAL 128 A HIS 129 n 129 HIS 129 A GLU 130 n 130 GLU 130 A ASN 131 n 131 ASN 131 A GLU 132 n 132 GLU 132 A ILE 133 n 133 ILE 133 A THR 134 n 134 THR 134 A LYS 135 n 135 LYS 135 A VAL 136 n 136 VAL 136 A ARG 137 n 137 ARG 137 A LYS 138 n 138 LYS 138 A SER 139 n 139 SER 139 A VAL 140 n 140 VAL 140 A PHE 141 n 141 PHE 141 A ASN 142 n 142 ASN 142 A GLY 143 n 143 GLY 143 A LEU 144 n 144 LEU 144 A ASN 145 n 145 ASN 145 A GLN 146 n 146 GLN 146 A MET 147 n 147 MET 147 A ILE 148 n 148 ILE 148 A VAL 149 n 149 VAL 149 A VAL 150 n 150 VAL 150 A GLU 151 n 151 GLU 151 A LEU 152 n 152 LEU 152 A GLY 153 n 153 GLY 153 A THR 154 n 154 THR 154 A ASN 155 n 155 ASN 155 A PRO 156 n 156 PRO 156 A LEU 157 n 157 LEU 157 A LYS 158 n 158 LYS 158 A SER 159 n 159 SER 159 A SER 160 n 160 SER 160 A GLY 161 n 161 GLY 161 A ILE 162 n 162 ILE 162 A GLU 163 n 163 GLU 163 A ASN 164 n 164 ASN 164 A GLY 165 n 165 GLY 165 A ALA 166 n 166 ALA 166 A PHE 167 n 167 PHE 167 A GLN 168 n 168 GLN 168 A GLY 169 n 169 GLY 169 A MET 170 n 170 MET 170 A LYS 171 n 171 LYS 171 A LYS 172 n 172 LYS 172 A LEU 173 n 173 LEU 173 A SER 174 n 174 SER 174 A TYR 175 n 175 TYR 175 A ILE 176 n 176 ILE 176 A ARG 177 n 177 ARG 177 A ILE 178 n 178 ILE 178 A ALA 179 n 179 ALA 179 A ASP 180 n 180 ASP 180 A THR 181 n 181 THR 181 A ASN 182 n 182 ASN 182 A ILE 183 n 183 ILE 183 A THR 184 n 184 THR 184 A THR 185 n 185 THR 185 A ILE 186 n 186 ILE 186 A PRO 187 n 187 PRO 187 A GLN 188 n 188 GLN 188 A GLY 189 n 189 GLY 189 A LEU 190 n 190 LEU 190 A PRO 191 n 191 PRO 191 A PRO 192 n 192 PRO 192 A SER 193 n 193 SER 193 A LEU 194 n 194 LEU 194 A THR 195 n 195 THR 195 A GLU 196 n 196 GLU 196 A LEU 197 n 197 LEU 197 A HIS 198 n 198 HIS 198 A LEU 199 n 199 LEU 199 A ASP 200 n 200 ASP 200 A GLY 201 n 201 GLY 201 A ASN 202 n 202 ASN 202 A LYS 203 n 203 LYS 203 A ILE 204 n 204 ILE 204 A THR 205 n 205 THR 205 A LYS 206 n 206 LYS 206 A VAL 207 n 207 VAL 207 A ASP 208 n 208 ASP 208 A ALA 209 n 209 ALA 209 A ALA 210 n 210 ALA 210 A SER 211 n 211 SER 211 A LEU 212 n 212 LEU 212 A LYS 213 n 213 LYS 213 A GLY 214 n 214 GLY 214 A LEU 215 n 215 LEU 215 A ASN 216 n 216 ASN 216 A ASN 217 n 217 ASN 217 A LEU 218 n 218 LEU 218 A ALA 219 n 219 ALA 219 A LYS 220 n 220 LYS 220 A LEU 221 n 221 LEU 221 A GLY 222 n 222 GLY 222 A LEU 223 n 223 LEU 223 A SER 224 n 224 SER 224 A PHE 225 n 225 PHE 225 A ASN 226 n 226 ASN 226 A SER 227 n 227 SER 227 A ILE 228 n 228 ILE 228 A SER 229 n 229 SER 229 A ALA 230 n 230 ALA 230 A VAL 231 n 231 VAL 231 A ASP 232 n 232 ASP 232 A ASN 233 n 233 ASN 233 A GLY 234 n 234 GLY 234 A SER 235 n 235 SER 235 A LEU 236 n 236 LEU 236 A ALA 237 n 237 ALA 237 A ASN 238 n 238 ASN 238 A THR 239 n 239 THR 239 A PRO 240 n 240 PRO 240 A HIS 241 n 241 HIS 241 A LEU 242 n 242 LEU 242 A ARG 243 n 243 ARG 243 A GLU 244 n 244 GLU 244 A LEU 245 n 245 LEU 245 A HIS 246 n 246 HIS 246 A LEU 247 n 247 LEU 247 A ASN 248 n 248 ASN 248 A ASN 249 n 249 ASN 249 A ASN 250 n 250 ASN 250 A LYS 251 n 251 LYS 251 A LEU 252 n 252 LEU 252 A VAL 253 n 253 VAL 253 A LYS 254 n 254 LYS 254 A VAL 255 n 255 VAL 255 A PRO 256 n 256 PRO 256 A GLY 257 n 257 GLY 257 A GLY 258 n 258 GLY 258 A LEU 259 n 259 LEU 259 A ALA 260 n 260 ALA 260 A ASP 261 n 261 ASP 261 A HIS 262 n 262 HIS 262 A LYS 263 n 263 LYS 263 A TYR 264 n 264 TYR 264 A ILE 265 n 265 ILE 265 A GLN 266 n 266 GLN 266 A VAL 267 n 267 VAL 267 A VAL 268 n 268 VAL 268 A TYR 269 n 269 TYR 269 A LEU 270 n 270 LEU 270 A HIS 271 n 271 HIS 271 A ASN 272 n 272 ASN 272 A ASN 273 n 273 ASN 273 A ASN 274 n 274 ASN 274 A ILE 275 n 275 ILE 275 A SER 276 n 276 SER 276 A ALA 277 n 277 ALA 277 A ILE 278 n 278 ILE 278 A GLY 279 n 279 GLY 279 A SER 280 n 280 SER 280 A ASN 281 n 281 ASN 281 A ASP 282 n 282 ASP 282 A PHE 283 n 283 PHE 283 A CYS 284 n 284 CYS 284 A PRO 285 n 285 PRO 285 A PRO 286 n 286 PRO 286 A GLY 287 n 287 GLY 287 A TYR 288 n 288 TYR 288 A ASN 289 n 289 ASN 289 A THR 290 n 290 THR 290 A LYS 291 n 291 LYS 291 A LYS 292 n 292 LYS 292 A ALA 293 n 293 ALA 293 A SER 294 n 294 SER 294 A TYR 295 n 295 TYR 295 A SER 296 n 296 SER 296 A GLY 297 n 297 GLY 297 A VAL 298 n 298 VAL 298 A SER 299 n 299 SER 299 A LEU 300 n 300 LEU 300 A PHE 301 n 301 PHE 301 A SER 302 n 302 SER 302 A ASN 303 n 303 ASN 303 A PRO 304 n 304 PRO 304 A VAL 305 n 305 VAL 305 A GLN 306 n 306 GLN 306 A TYR 307 n 307 TYR 307 A TRP 308 n 308 TRP 308 A GLU 309 n 309 GLU 309 A ILE 310 n 310 ILE 310 A GLN 311 n 311 GLN 311 A PRO 312 n 312 PRO 312 A SER 313 n 313 SER 313 A THR 314 n 314 THR 314 A PHE 315 n 315 PHE 315 A ARG 316 n 316 ARG 316 A CYS 317 n 317 CYS 317 A VAL 318 n 318 VAL 318 A TYR 319 n 319 TYR 319 A VAL 320 n 320 VAL 320 A ARG 321 n 321 ARG 321 A ALA 322 n 322 ALA 322 A ALA 323 n 323 ALA 323 A VAL 324 n 324 VAL 324 A GLN 325 n 325 GLN 325 A LEU 326 n 326 LEU 326 A n 327 327 A n 328 328 A n 329 329 A n 330 330 A 0.6519 0.0091 -0.2295 1.1294 0.0189 4.3774 -0.0643 0.0574 0.0165 0.0220 -0.0576 0.2674 0.0796 -0.7408 0.1219 -0.1527 -0.0007 0.0069 -0.0084 -0.0448 -0.0113 refined -11.9538 12.1333 36.2715 X-RAY DIFFRACTION 1.2581 0.2958 0.6580 3.4785 -1.0147 3.9797 -0.0568 -0.1930 0.0746 0.7388 -0.1487 -0.2582 -0.4300 0.0983 0.2056 0.1729 -0.0325 -0.0327 -0.0781 -0.0467 -0.0174 refined 2.0981 16.0869 68.3309 X-RAY DIFFRACTION A 22 A 22 A 200 A 200 X-RAY DIFFRACTION 1 A 201 A 201 A 326 A 326 X-RAY DIFFRACTION 2 author_defined_assembly 2 dimeric A ASN 182 GLYCOSYLATION SITE A ASN 182 ASN A ASN 233 GLYCOSYLATION SITE A ASN 233 ASN A ASN 274 GLYCOSYLATION SITE A ASN 274 ASN 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 3_555 -x,y,-z+1/2 crystal symmetry operation 0.0000000000 0.0000000000 64.8045000000 A N GLN 30 A N GLN 30 A O GLN 37 A O GLN 37 A N VAL 36 A N VAL 36 A O ASP 58 A O ASP 58 A N LEU 57 A N LEU 57 A O ILE 82 A O ILE 82 A N LEU 81 A N LEU 81 A O TYR 106 A O TYR 106 A N LEU 105 A N LEU 105 A O GLU 125 A O GLU 125 A N LEU 126 A N LEU 126 A O GLU 151 A O GLU 151 A N VAL 150 A N VAL 150 A O ARG 177 A O ARG 177 A N ILE 176 A N ILE 176 A O HIS 198 A O HIS 198 A N LEU 197 A N LEU 197 A O GLY 222 A O GLY 222 A N LEU 221 A N LEU 221 A O HIS 246 A O HIS 246 A N LEU 245 A N LEU 245 A O VAL 267 A O VAL 267 A N VAL 268 A N VAL 268 A O GLY 297 A O GLY 297 A N VAL 298 A N VAL 298 A O GLN 325 A O GLN 325 A N VAL 207 A N VAL 207 A O ALA 230 A O ALA 230 1 A HOH 803 F HOH 1 A ASP 1 A ASP 1 1 Y 1 A GLU 2 A GLU 2 1 Y 1 A ALA 3 A ALA 3 1 Y 1 A SER 4 A SER 4 1 Y 1 A GLY 5 A GLY 5 1 Y 1 A ILE 6 A ILE 6 1 Y 1 A GLY 7 A GLY 7 1 Y 1 A PRO 8 A PRO 8 1 Y 1 A GLU 9 A GLU 9 1 Y 1 A GLU 10 A GLU 10 1 Y 1 A HIS 11 A HIS 11 1 Y 1 A PHE 12 A PHE 12 1 Y 1 A PRO 13 A PRO 13 1 Y 1 A GLU 14 A GLU 14 1 Y 1 A VAL 15 A VAL 15 1 Y 1 A PRO 16 A PRO 16 1 Y 1 A GLU 17 A GLU 17 1 Y 1 A ILE 18 A ILE 18 1 Y 1 A GLU 19 A GLU 19 1 Y 1 A PRO 20 A PRO 20 1 Y 1 A MET 21 A MET 21 1 Y 1 A GLY 327 A GLY 327 1 Y 1 A ASN 328 A ASN 328 1 Y 1 A TYR 329 A TYR 329 1 Y 1 A LYS 330 A LYS 330 1 Y 1 7.52 0.90 118.30 125.82 A A A CB CG OD2 ASP ASP ASP 53 53 53 N 1 5.82 0.90 118.30 124.12 A A A CB CG OD2 ASP ASP ASP 71 71 71 N 1 -3.21 0.50 120.30 117.09 A A A NE CZ NH2 ARG ARG ARG 243 243 243 N 1 -4.93 0.80 107.30 102.37 A A A CE2 CD2 CG TRP TRP TRP 308 308 308 N 1 A A CD OE1 GLU GLU 309 309 0.159 0.011 1.252 1.411 N 1 A A CD OE2 GLU GLU 309 309 0.223 0.011 1.252 1.475 N 1 A ARG 28 91.19 -19.91 1 A ASN 62 -126.60 -160.38 1 A ASN 86 -115.74 -154.86 1 A ASN 131 -120.66 -155.34 1 A LEU 157 -39.58 130.01 1 A THR 181 -117.46 -169.17 1 A ASN 202 -103.14 -150.15 1 A ASN 226 -118.28 -161.45 1 A THR 239 -115.13 69.83 1 A ASN 250 -133.88 -157.65 39.491 1.92 0.00 0.00 0.19 0.00 -2.11 0.957 0.953 0.21747 0.18951 0.19093 0.19093 2.15 33.00 1253 24591 24591 5.1 98.69 7.575 0.102 RANDOM LIKELY RESIDUAL 1 THROUGHOUT 0.000 SIRAS 0.186 0.159 0.80 0.80 1.20 Engh & Huber MASK 0.159 0.186 33 0.102 2.15 33.00 164 2585 50 0 2371 0.021 0.022 2470 0.001 0.020 1 1.719 1.991 3352 0.539 3.000 2 5.519 5.000 304 43.917 25.600 100 15.199 15.000 442 14.684 15.000 9 0.117 0.200 393 0.008 0.020 1797 0.001 0.020 1 0.214 0.200 1016 0.287 0.200 2 0.308 0.200 1624 0.239 0.200 2 0.147 0.200 150 0.250 0.200 35 0.132 0.200 12 1.049 1.500 1587 0.032 1.500 1 1.632 2.000 2481 2.973 3.000 990 4.702 4.500 871 0.337 0.244 2.206 74 1545 1619 20 89.35 32.2 2.15 33.2 1XKU 24593 24593 0.000 0.000 0.048 1 8.7 10.7 98.7 2.15 2.28 2.1 3266 0.367 1 8.2 93.7 refinement REFMAC 5.2.0003 data reduction MOSFLM data scaling CCP4 (TRUNCATE) phasing SHARP Decorin Crystal structure of the dimeric protein core of decorin, the archetypal small leucine-rich repeat proteoglycan 1 N N 2 N N 2 N N 2 N N 3 N N 4 N N The second part of the biological assembly is generated by the two-fold axis -x, y, -z+1/2 A ARG 137 A ARG 137 HELX_P A ASN 142 A ASN 142 1 1 6 A LYS 158 A LYS 158 HELX_P A ILE 162 A ILE 162 5 2 5 A GLY 165 A GLY 165 HELX_P A MET 170 A MET 170 5 3 6 A ALA 209 A ALA 209 HELX_P A LYS 213 A LYS 213 5 4 5 A SER 235 A SER 235 HELX_P A THR 239 A THR 239 5 5 5 A GLN 306 A GLN 306 HELX_P A ILE 310 A ILE 310 5 6 5 A GLN 311 A GLN 311 HELX_P A ARG 316 A ARG 316 5 7 6 A VAL 320 A VAL 320 HELX_P A ALA 322 A ALA 322 5 8 3 disulf 2.057 A CYS 25 A SG CYS 25 1_555 A CYS 31 A SG CYS 31 1_555 disulf 2.089 A CYS 29 A SG CYS 29 1_555 A CYS 38 A SG CYS 38 1_555 disulf 2.086 A CYS 284 A SG CYS 284 1_555 A CYS 317 A SG CYS 317 1_555 covale 1.460 one N-Glycosylation A ASN 182 A ND2 ASN 182 1_555 A NAG 800 B C1 NAG 1_555 covale 1.446 one N-Glycosylation A ASN 233 A ND2 ASN 233 1_555 A NAG 801 C C1 NAG 1_555 covale 1.446 one N-Glycosylation A ASN 274 A ND2 ASN 274 1_555 A NAG 802 D C1 NAG 1_555 STRUCTURAL PROTEIN Proteoglycan, Leucine-rich repeat, STRUCTURAL PROTEIN PGS2_BOVIN UNP 1 31 P21793 DEASGIGPEEHFPEVPEIEPMGPVCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHT LILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS GIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP HLRELHLNNNKLAKVPGGVADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV RAAVQLGNYK 31 360 1XKU 1 330 P21793 A 1 1 330 1 ALA SEE REMARK 999 VAL 253 1XKU A P21793 UNP 283 253 1 VAL SEE REMARK 999 LEU 259 1XKU A P21793 UNP 289 259 14 2 anti-parallel parallel parallel parallel parallel parallel parallel parallel parallel parallel parallel parallel parallel parallel A GLN 30 A GLN 30 A HIS 32 A HIS 32 A VAL 35 A VAL 35 A GLN 37 A GLN 37 A LEU 56 A LEU 56 A ASP 58 A ASP 58 A THR 80 A THR 80 A ILE 82 A ILE 82 A ARG 104 A ARG 104 A TYR 106 A TYR 106 A GLU 125 A GLU 125 A ARG 127 A ARG 127 A VAL 149 A VAL 149 A GLU 151 A GLU 151 A TYR 175 A TYR 175 A ARG 177 A ARG 177 A GLU 196 A GLU 196 A HIS 198 A HIS 198 A LYS 220 A LYS 220 A GLY 222 A GLY 222 A GLU 244 A GLU 244 A HIS 246 A HIS 246 A VAL 267 A VAL 267 A TYR 269 A TYR 269 A GLY 297 A GLY 297 A SER 299 A SER 299 A VAL 324 A VAL 324 A GLN 325 A GLN 325 A LYS 206 A LYS 206 A VAL 207 A VAL 207 A ALA 230 A ALA 230 A VAL 231 A VAL 231 20 C 2 2 21