0.017928
0.000000
0.000000
0.000000
0.008055
0.000000
0.000000
0.000000
0.007716
0.00000
0.00000
0.00000
Scott, P.G.
McEwan, P.A.
Dodd, C.M.
Bergmann, E.M.
Bishop, P.N.
Bella, J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
55.780
124.145
129.609
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C8 H15 N O6
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
D-saccharide, beta linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C4 H12 N O3 1
122.143
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
TRIS BUFFER
non-polymer
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Proc.Natl.Acad.Sci.Usa
PNASA6
0040
0027-8424
101
15633
15638
10.1073/pnas.0402976101
15501918
Crystal structure of the dimeric protein core of decorin, the archetypal small leucine-rich repeat proteoglycan
2004
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
278
18353
18359
10.1074/jbc.M211936200
12601001
Light and X-ray scattering show decorin to be a dimer in solution
2003
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
IMAGE PLATE
2002-01-25
RIGAKU RAXIS IV
Osmic
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RUH3R
36512.938
Decorin
1
man
polymer
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
3
man
non-polymer
122.143
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
1
syn
non-polymer
18.015
water
164
nat
water
Bone proteoglycan II, PG-S2
no
no
DEASGIGPEEHFPEVPEIEPMGPVCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHT
LILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS
GIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP
HLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV
RAAVQLGNYK
DEASGIGPEEHFPEVPEIEPMGPVCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHT
LILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS
GIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP
HLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV
RAAVQLGNYK
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
cattle
Bos
human
Homo
sample
DCN
9913
Bos taurus
HEK 293A
9606
Homo sapiens
Adenovirus
1
3.31
62.57
VAPOR DIFFUSION, HANGING DROP
7.75
PEG 400, TRIS, OCTYL-BETA-D-GLUCOPYRANOSIDE, SODIUM AZIDE, pH 7.75, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
chem_comp
entity
pdbx_chem_comp_identifier
pdbx_entity_nonpoly
struct_conn
struct_site
struct_site_gen
repository
Initial release
Carbohydrate remediation
repository
Remediation
Version format compliance
Advisory
Version format compliance
Data collection
Derived calculations
Structure summary
1
0
2004-11-02
1
1
2008-04-30
1
2
2011-07-13
1
3
2020-07-29
_chem_comp.name
_chem_comp.type
_entity.pdbx_description
_pdbx_entity_nonpoly.name
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_role
DGlcpNAcb
N-acetyl-b-D-glucopyranosamine
b-D-GlcpNAc
GlcNAc
Dimeric bovine tissue-extracted decorin, crystal form 1
Dimeric bovine tissue-extracted decorin, crystal form 2
RCSB
Y
PDBJ
2004-09-29
REL
REL
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose
TRS
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
HOH
water
NAG
800
2
NAG
NAG
800
A
NAG
801
2
NAG
NAG
801
A
NAG
802
2
NAG
NAG
802
A
TMN
968
3
TRS
TRS
968
A
HOH
803
4
HOH
HOH
803
A
HOH
804
4
HOH
HOH
804
A
HOH
805
4
HOH
HOH
805
A
HOH
806
4
HOH
HOH
806
A
HOH
807
4
HOH
HOH
807
A
HOH
808
4
HOH
HOH
808
A
HOH
809
4
HOH
HOH
809
A
HOH
810
4
HOH
HOH
810
A
HOH
811
4
HOH
HOH
811
A
HOH
812
4
HOH
HOH
812
A
HOH
813
4
HOH
HOH
813
A
HOH
814
4
HOH
HOH
814
A
HOH
815
4
HOH
HOH
815
A
HOH
816
4
HOH
HOH
816
A
HOH
817
4
HOH
HOH
817
A
HOH
818
4
HOH
HOH
818
A
HOH
819
4
HOH
HOH
819
A
HOH
820
4
HOH
HOH
820
A
HOH
821
4
HOH
HOH
821
A
HOH
822
4
HOH
HOH
822
A
HOH
823
4
HOH
HOH
823
A
HOH
824
4
HOH
HOH
824
A
HOH
825
4
HOH
HOH
825
A
HOH
826
4
HOH
HOH
826
A
HOH
827
4
HOH
HOH
827
A
HOH
828
4
HOH
HOH
828
A
HOH
829
4
HOH
HOH
829
A
HOH
830
4
HOH
HOH
830
A
HOH
831
4
HOH
HOH
831
A
HOH
832
4
HOH
HOH
832
A
HOH
833
4
HOH
HOH
833
A
HOH
834
4
HOH
HOH
834
A
HOH
835
4
HOH
HOH
835
A
HOH
836
4
HOH
HOH
836
A
HOH
837
4
HOH
HOH
837
A
HOH
838
4
HOH
HOH
838
A
HOH
839
4
HOH
HOH
839
A
HOH
840
4
HOH
HOH
840
A
HOH
841
4
HOH
HOH
841
A
HOH
842
4
HOH
HOH
842
A
HOH
843
4
HOH
HOH
843
A
HOH
844
4
HOH
HOH
844
A
HOH
845
4
HOH
HOH
845
A
HOH
846
4
HOH
HOH
846
A
HOH
847
4
HOH
HOH
847
A
HOH
848
4
HOH
HOH
848
A
HOH
849
4
HOH
HOH
849
A
HOH
850
4
HOH
HOH
850
A
HOH
851
4
HOH
HOH
851
A
HOH
852
4
HOH
HOH
852
A
HOH
853
4
HOH
HOH
853
A
HOH
854
4
HOH
HOH
854
A
HOH
855
4
HOH
HOH
855
A
HOH
856
4
HOH
HOH
856
A
HOH
857
4
HOH
HOH
857
A
HOH
858
4
HOH
HOH
858
A
HOH
859
4
HOH
HOH
859
A
HOH
860
4
HOH
HOH
860
A
HOH
861
4
HOH
HOH
861
A
HOH
862
4
HOH
HOH
862
A
HOH
863
4
HOH
HOH
863
A
HOH
864
4
HOH
HOH
864
A
HOH
865
4
HOH
HOH
865
A
HOH
866
4
HOH
HOH
866
A
HOH
867
4
HOH
HOH
867
A
HOH
868
4
HOH
HOH
868
A
HOH
869
4
HOH
HOH
869
A
HOH
870
4
HOH
HOH
870
A
HOH
871
4
HOH
HOH
871
A
HOH
872
4
HOH
HOH
872
A
HOH
873
4
HOH
HOH
873
A
HOH
874
4
HOH
HOH
874
A
HOH
875
4
HOH
HOH
875
A
HOH
876
4
HOH
HOH
876
A
HOH
877
4
HOH
HOH
877
A
HOH
878
4
HOH
HOH
878
A
HOH
879
4
HOH
HOH
879
A
HOH
880
4
HOH
HOH
880
A
HOH
881
4
HOH
HOH
881
A
HOH
882
4
HOH
HOH
882
A
HOH
883
4
HOH
HOH
883
A
HOH
884
4
HOH
HOH
884
A
HOH
885
4
HOH
HOH
885
A
HOH
886
4
HOH
HOH
886
A
HOH
887
4
HOH
HOH
887
A
HOH
888
4
HOH
HOH
888
A
HOH
889
4
HOH
HOH
889
A
HOH
890
4
HOH
HOH
890
A
HOH
891
4
HOH
HOH
891
A
HOH
892
4
HOH
HOH
892
A
HOH
893
4
HOH
HOH
893
A
HOH
894
4
HOH
HOH
894
A
HOH
895
4
HOH
HOH
895
A
HOH
896
4
HOH
HOH
896
A
HOH
897
4
HOH
HOH
897
A
HOH
898
4
HOH
HOH
898
A
HOH
899
4
HOH
HOH
899
A
HOH
900
4
HOH
HOH
900
A
HOH
901
4
HOH
HOH
901
A
HOH
902
4
HOH
HOH
902
A
HOH
903
4
HOH
HOH
903
A
HOH
904
4
HOH
HOH
904
A
HOH
905
4
HOH
HOH
905
A
HOH
906
4
HOH
HOH
906
A
HOH
907
4
HOH
HOH
907
A
HOH
908
4
HOH
HOH
908
A
HOH
909
4
HOH
HOH
909
A
HOH
910
4
HOH
HOH
910
A
HOH
911
4
HOH
HOH
911
A
HOH
912
4
HOH
HOH
912
A
HOH
913
4
HOH
HOH
913
A
HOH
914
4
HOH
HOH
914
A
HOH
915
4
HOH
HOH
915
A
HOH
916
4
HOH
HOH
916
A
HOH
917
4
HOH
HOH
917
A
HOH
918
4
HOH
HOH
918
A
HOH
919
4
HOH
HOH
919
A
HOH
920
4
HOH
HOH
920
A
HOH
921
4
HOH
HOH
921
A
HOH
922
4
HOH
HOH
922
A
HOH
923
4
HOH
HOH
923
A
HOH
924
4
HOH
HOH
924
A
HOH
925
4
HOH
HOH
925
A
HOH
926
4
HOH
HOH
926
A
HOH
927
4
HOH
HOH
927
A
HOH
928
4
HOH
HOH
928
A
HOH
929
4
HOH
HOH
929
A
HOH
930
4
HOH
HOH
930
A
HOH
931
4
HOH
HOH
931
A
HOH
932
4
HOH
HOH
932
A
HOH
933
4
HOH
HOH
933
A
HOH
934
4
HOH
HOH
934
A
HOH
935
4
HOH
HOH
935
A
HOH
936
4
HOH
HOH
936
A
HOH
937
4
HOH
HOH
937
A
HOH
938
4
HOH
HOH
938
A
HOH
939
4
HOH
HOH
939
A
HOH
940
4
HOH
HOH
940
A
HOH
941
4
HOH
HOH
941
A
HOH
942
4
HOH
HOH
942
A
HOH
943
4
HOH
HOH
943
A
HOH
944
4
HOH
HOH
944
A
HOH
945
4
HOH
HOH
945
A
HOH
946
4
HOH
HOH
946
A
HOH
947
4
HOH
HOH
947
A
HOH
948
4
HOH
HOH
948
A
HOH
949
4
HOH
HOH
949
A
HOH
950
4
HOH
HOH
950
A
HOH
951
4
HOH
HOH
951
A
HOH
952
4
HOH
HOH
952
A
HOH
953
4
HOH
HOH
953
A
HOH
954
4
HOH
HOH
954
A
HOH
955
4
HOH
HOH
955
A
HOH
956
4
HOH
HOH
956
A
HOH
957
4
HOH
HOH
957
A
HOH
958
4
HOH
HOH
958
A
HOH
959
4
HOH
HOH
959
A
HOH
960
4
HOH
HOH
960
A
HOH
961
4
HOH
HOH
961
A
HOH
962
4
HOH
HOH
962
A
HOH
963
4
HOH
HOH
963
A
HOH
964
4
HOH
HOH
964
A
HOH
965
4
HOH
HOH
965
A
HOH
966
4
HOH
HOH
966
A
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
n
6
6
A
n
7
7
A
n
8
8
A
n
9
9
A
n
10
10
A
n
11
11
A
n
12
12
A
n
13
13
A
n
14
14
A
n
15
15
A
n
16
16
A
n
17
17
A
n
18
18
A
n
19
19
A
n
20
20
A
n
21
21
A
GLY
22
n
22
GLY
22
A
PRO
23
n
23
PRO
23
A
VAL
24
n
24
VAL
24
A
CYS
25
n
25
CYS
25
A
PRO
26
n
26
PRO
26
A
PHE
27
n
27
PHE
27
A
ARG
28
n
28
ARG
28
A
CYS
29
n
29
CYS
29
A
GLN
30
n
30
GLN
30
A
CYS
31
n
31
CYS
31
A
HIS
32
n
32
HIS
32
A
LEU
33
n
33
LEU
33
A
ARG
34
n
34
ARG
34
A
VAL
35
n
35
VAL
35
A
VAL
36
n
36
VAL
36
A
GLN
37
n
37
GLN
37
A
CYS
38
n
38
CYS
38
A
SER
39
n
39
SER
39
A
ASP
40
n
40
ASP
40
A
LEU
41
n
41
LEU
41
A
GLY
42
n
42
GLY
42
A
LEU
43
n
43
LEU
43
A
GLU
44
n
44
GLU
44
A
LYS
45
n
45
LYS
45
A
VAL
46
n
46
VAL
46
A
PRO
47
n
47
PRO
47
A
LYS
48
n
48
LYS
48
A
ASP
49
n
49
ASP
49
A
LEU
50
n
50
LEU
50
A
PRO
51
n
51
PRO
51
A
PRO
52
n
52
PRO
52
A
ASP
53
n
53
ASP
53
A
THR
54
n
54
THR
54
A
ALA
55
n
55
ALA
55
A
LEU
56
n
56
LEU
56
A
LEU
57
n
57
LEU
57
A
ASP
58
n
58
ASP
58
A
LEU
59
n
59
LEU
59
A
GLN
60
n
60
GLN
60
A
ASN
61
n
61
ASN
61
A
ASN
62
n
62
ASN
62
A
LYS
63
n
63
LYS
63
A
ILE
64
n
64
ILE
64
A
THR
65
n
65
THR
65
A
GLU
66
n
66
GLU
66
A
ILE
67
n
67
ILE
67
A
LYS
68
n
68
LYS
68
A
ASP
69
n
69
ASP
69
A
GLY
70
n
70
GLY
70
A
ASP
71
n
71
ASP
71
A
PHE
72
n
72
PHE
72
A
LYS
73
n
73
LYS
73
A
ASN
74
n
74
ASN
74
A
LEU
75
n
75
LEU
75
A
LYS
76
n
76
LYS
76
A
ASN
77
n
77
ASN
77
A
LEU
78
n
78
LEU
78
A
HIS
79
n
79
HIS
79
A
THR
80
n
80
THR
80
A
LEU
81
n
81
LEU
81
A
ILE
82
n
82
ILE
82
A
LEU
83
n
83
LEU
83
A
ILE
84
n
84
ILE
84
A
ASN
85
n
85
ASN
85
A
ASN
86
n
86
ASN
86
A
LYS
87
n
87
LYS
87
A
ILE
88
n
88
ILE
88
A
SER
89
n
89
SER
89
A
LYS
90
n
90
LYS
90
A
ILE
91
n
91
ILE
91
A
SER
92
n
92
SER
92
A
PRO
93
n
93
PRO
93
A
GLY
94
n
94
GLY
94
A
ALA
95
n
95
ALA
95
A
PHE
96
n
96
PHE
96
A
ALA
97
n
97
ALA
97
A
PRO
98
n
98
PRO
98
A
LEU
99
n
99
LEU
99
A
VAL
100
n
100
VAL
100
A
LYS
101
n
101
LYS
101
A
LEU
102
n
102
LEU
102
A
GLU
103
n
103
GLU
103
A
ARG
104
n
104
ARG
104
A
LEU
105
n
105
LEU
105
A
TYR
106
n
106
TYR
106
A
LEU
107
n
107
LEU
107
A
SER
108
n
108
SER
108
A
LYS
109
n
109
LYS
109
A
ASN
110
n
110
ASN
110
A
GLN
111
n
111
GLN
111
A
LEU
112
n
112
LEU
112
A
LYS
113
n
113
LYS
113
A
GLU
114
n
114
GLU
114
A
LEU
115
n
115
LEU
115
A
PRO
116
n
116
PRO
116
A
GLU
117
n
117
GLU
117
A
LYS
118
n
118
LYS
118
A
MET
119
n
119
MET
119
A
PRO
120
n
120
PRO
120
A
LYS
121
n
121
LYS
121
A
THR
122
n
122
THR
122
A
LEU
123
n
123
LEU
123
A
GLN
124
n
124
GLN
124
A
GLU
125
n
125
GLU
125
A
LEU
126
n
126
LEU
126
A
ARG
127
n
127
ARG
127
A
VAL
128
n
128
VAL
128
A
HIS
129
n
129
HIS
129
A
GLU
130
n
130
GLU
130
A
ASN
131
n
131
ASN
131
A
GLU
132
n
132
GLU
132
A
ILE
133
n
133
ILE
133
A
THR
134
n
134
THR
134
A
LYS
135
n
135
LYS
135
A
VAL
136
n
136
VAL
136
A
ARG
137
n
137
ARG
137
A
LYS
138
n
138
LYS
138
A
SER
139
n
139
SER
139
A
VAL
140
n
140
VAL
140
A
PHE
141
n
141
PHE
141
A
ASN
142
n
142
ASN
142
A
GLY
143
n
143
GLY
143
A
LEU
144
n
144
LEU
144
A
ASN
145
n
145
ASN
145
A
GLN
146
n
146
GLN
146
A
MET
147
n
147
MET
147
A
ILE
148
n
148
ILE
148
A
VAL
149
n
149
VAL
149
A
VAL
150
n
150
VAL
150
A
GLU
151
n
151
GLU
151
A
LEU
152
n
152
LEU
152
A
GLY
153
n
153
GLY
153
A
THR
154
n
154
THR
154
A
ASN
155
n
155
ASN
155
A
PRO
156
n
156
PRO
156
A
LEU
157
n
157
LEU
157
A
LYS
158
n
158
LYS
158
A
SER
159
n
159
SER
159
A
SER
160
n
160
SER
160
A
GLY
161
n
161
GLY
161
A
ILE
162
n
162
ILE
162
A
GLU
163
n
163
GLU
163
A
ASN
164
n
164
ASN
164
A
GLY
165
n
165
GLY
165
A
ALA
166
n
166
ALA
166
A
PHE
167
n
167
PHE
167
A
GLN
168
n
168
GLN
168
A
GLY
169
n
169
GLY
169
A
MET
170
n
170
MET
170
A
LYS
171
n
171
LYS
171
A
LYS
172
n
172
LYS
172
A
LEU
173
n
173
LEU
173
A
SER
174
n
174
SER
174
A
TYR
175
n
175
TYR
175
A
ILE
176
n
176
ILE
176
A
ARG
177
n
177
ARG
177
A
ILE
178
n
178
ILE
178
A
ALA
179
n
179
ALA
179
A
ASP
180
n
180
ASP
180
A
THR
181
n
181
THR
181
A
ASN
182
n
182
ASN
182
A
ILE
183
n
183
ILE
183
A
THR
184
n
184
THR
184
A
THR
185
n
185
THR
185
A
ILE
186
n
186
ILE
186
A
PRO
187
n
187
PRO
187
A
GLN
188
n
188
GLN
188
A
GLY
189
n
189
GLY
189
A
LEU
190
n
190
LEU
190
A
PRO
191
n
191
PRO
191
A
PRO
192
n
192
PRO
192
A
SER
193
n
193
SER
193
A
LEU
194
n
194
LEU
194
A
THR
195
n
195
THR
195
A
GLU
196
n
196
GLU
196
A
LEU
197
n
197
LEU
197
A
HIS
198
n
198
HIS
198
A
LEU
199
n
199
LEU
199
A
ASP
200
n
200
ASP
200
A
GLY
201
n
201
GLY
201
A
ASN
202
n
202
ASN
202
A
LYS
203
n
203
LYS
203
A
ILE
204
n
204
ILE
204
A
THR
205
n
205
THR
205
A
LYS
206
n
206
LYS
206
A
VAL
207
n
207
VAL
207
A
ASP
208
n
208
ASP
208
A
ALA
209
n
209
ALA
209
A
ALA
210
n
210
ALA
210
A
SER
211
n
211
SER
211
A
LEU
212
n
212
LEU
212
A
LYS
213
n
213
LYS
213
A
GLY
214
n
214
GLY
214
A
LEU
215
n
215
LEU
215
A
ASN
216
n
216
ASN
216
A
ASN
217
n
217
ASN
217
A
LEU
218
n
218
LEU
218
A
ALA
219
n
219
ALA
219
A
LYS
220
n
220
LYS
220
A
LEU
221
n
221
LEU
221
A
GLY
222
n
222
GLY
222
A
LEU
223
n
223
LEU
223
A
SER
224
n
224
SER
224
A
PHE
225
n
225
PHE
225
A
ASN
226
n
226
ASN
226
A
SER
227
n
227
SER
227
A
ILE
228
n
228
ILE
228
A
SER
229
n
229
SER
229
A
ALA
230
n
230
ALA
230
A
VAL
231
n
231
VAL
231
A
ASP
232
n
232
ASP
232
A
ASN
233
n
233
ASN
233
A
GLY
234
n
234
GLY
234
A
SER
235
n
235
SER
235
A
LEU
236
n
236
LEU
236
A
ALA
237
n
237
ALA
237
A
ASN
238
n
238
ASN
238
A
THR
239
n
239
THR
239
A
PRO
240
n
240
PRO
240
A
HIS
241
n
241
HIS
241
A
LEU
242
n
242
LEU
242
A
ARG
243
n
243
ARG
243
A
GLU
244
n
244
GLU
244
A
LEU
245
n
245
LEU
245
A
HIS
246
n
246
HIS
246
A
LEU
247
n
247
LEU
247
A
ASN
248
n
248
ASN
248
A
ASN
249
n
249
ASN
249
A
ASN
250
n
250
ASN
250
A
LYS
251
n
251
LYS
251
A
LEU
252
n
252
LEU
252
A
VAL
253
n
253
VAL
253
A
LYS
254
n
254
LYS
254
A
VAL
255
n
255
VAL
255
A
PRO
256
n
256
PRO
256
A
GLY
257
n
257
GLY
257
A
GLY
258
n
258
GLY
258
A
LEU
259
n
259
LEU
259
A
ALA
260
n
260
ALA
260
A
ASP
261
n
261
ASP
261
A
HIS
262
n
262
HIS
262
A
LYS
263
n
263
LYS
263
A
TYR
264
n
264
TYR
264
A
ILE
265
n
265
ILE
265
A
GLN
266
n
266
GLN
266
A
VAL
267
n
267
VAL
267
A
VAL
268
n
268
VAL
268
A
TYR
269
n
269
TYR
269
A
LEU
270
n
270
LEU
270
A
HIS
271
n
271
HIS
271
A
ASN
272
n
272
ASN
272
A
ASN
273
n
273
ASN
273
A
ASN
274
n
274
ASN
274
A
ILE
275
n
275
ILE
275
A
SER
276
n
276
SER
276
A
ALA
277
n
277
ALA
277
A
ILE
278
n
278
ILE
278
A
GLY
279
n
279
GLY
279
A
SER
280
n
280
SER
280
A
ASN
281
n
281
ASN
281
A
ASP
282
n
282
ASP
282
A
PHE
283
n
283
PHE
283
A
CYS
284
n
284
CYS
284
A
PRO
285
n
285
PRO
285
A
PRO
286
n
286
PRO
286
A
GLY
287
n
287
GLY
287
A
TYR
288
n
288
TYR
288
A
ASN
289
n
289
ASN
289
A
THR
290
n
290
THR
290
A
LYS
291
n
291
LYS
291
A
LYS
292
n
292
LYS
292
A
ALA
293
n
293
ALA
293
A
SER
294
n
294
SER
294
A
TYR
295
n
295
TYR
295
A
SER
296
n
296
SER
296
A
GLY
297
n
297
GLY
297
A
VAL
298
n
298
VAL
298
A
SER
299
n
299
SER
299
A
LEU
300
n
300
LEU
300
A
PHE
301
n
301
PHE
301
A
SER
302
n
302
SER
302
A
ASN
303
n
303
ASN
303
A
PRO
304
n
304
PRO
304
A
VAL
305
n
305
VAL
305
A
GLN
306
n
306
GLN
306
A
TYR
307
n
307
TYR
307
A
TRP
308
n
308
TRP
308
A
GLU
309
n
309
GLU
309
A
ILE
310
n
310
ILE
310
A
GLN
311
n
311
GLN
311
A
PRO
312
n
312
PRO
312
A
SER
313
n
313
SER
313
A
THR
314
n
314
THR
314
A
PHE
315
n
315
PHE
315
A
ARG
316
n
316
ARG
316
A
CYS
317
n
317
CYS
317
A
VAL
318
n
318
VAL
318
A
TYR
319
n
319
TYR
319
A
VAL
320
n
320
VAL
320
A
ARG
321
n
321
ARG
321
A
ALA
322
n
322
ALA
322
A
ALA
323
n
323
ALA
323
A
VAL
324
n
324
VAL
324
A
GLN
325
n
325
GLN
325
A
LEU
326
n
326
LEU
326
A
n
327
327
A
n
328
328
A
n
329
329
A
n
330
330
A
0.6519
0.0091
-0.2295
1.1294
0.0189
4.3774
-0.0643
0.0574
0.0165
0.0220
-0.0576
0.2674
0.0796
-0.7408
0.1219
-0.1527
-0.0007
0.0069
-0.0084
-0.0448
-0.0113
refined
-11.9538
12.1333
36.2715
X-RAY DIFFRACTION
1.2581
0.2958
0.6580
3.4785
-1.0147
3.9797
-0.0568
-0.1930
0.0746
0.7388
-0.1487
-0.2582
-0.4300
0.0983
0.2056
0.1729
-0.0325
-0.0327
-0.0781
-0.0467
-0.0174
refined
2.0981
16.0869
68.3309
X-RAY DIFFRACTION
A
22
A
22
A
200
A
200
X-RAY DIFFRACTION
1
A
201
A
201
A
326
A
326
X-RAY DIFFRACTION
2
author_defined_assembly
2
dimeric
A
ASN
182
GLYCOSYLATION SITE
A
ASN
182
ASN
A
ASN
233
GLYCOSYLATION SITE
A
ASN
233
ASN
A
ASN
274
GLYCOSYLATION SITE
A
ASN
274
ASN
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
3_555
-x,y,-z+1/2
crystal symmetry operation
0.0000000000
0.0000000000
64.8045000000
A
N
GLN
30
A
N
GLN
30
A
O
GLN
37
A
O
GLN
37
A
N
VAL
36
A
N
VAL
36
A
O
ASP
58
A
O
ASP
58
A
N
LEU
57
A
N
LEU
57
A
O
ILE
82
A
O
ILE
82
A
N
LEU
81
A
N
LEU
81
A
O
TYR
106
A
O
TYR
106
A
N
LEU
105
A
N
LEU
105
A
O
GLU
125
A
O
GLU
125
A
N
LEU
126
A
N
LEU
126
A
O
GLU
151
A
O
GLU
151
A
N
VAL
150
A
N
VAL
150
A
O
ARG
177
A
O
ARG
177
A
N
ILE
176
A
N
ILE
176
A
O
HIS
198
A
O
HIS
198
A
N
LEU
197
A
N
LEU
197
A
O
GLY
222
A
O
GLY
222
A
N
LEU
221
A
N
LEU
221
A
O
HIS
246
A
O
HIS
246
A
N
LEU
245
A
N
LEU
245
A
O
VAL
267
A
O
VAL
267
A
N
VAL
268
A
N
VAL
268
A
O
GLY
297
A
O
GLY
297
A
N
VAL
298
A
N
VAL
298
A
O
GLN
325
A
O
GLN
325
A
N
VAL
207
A
N
VAL
207
A
O
ALA
230
A
O
ALA
230
1
A
HOH
803
F
HOH
1
A
ASP
1
A
ASP
1
1
Y
1
A
GLU
2
A
GLU
2
1
Y
1
A
ALA
3
A
ALA
3
1
Y
1
A
SER
4
A
SER
4
1
Y
1
A
GLY
5
A
GLY
5
1
Y
1
A
ILE
6
A
ILE
6
1
Y
1
A
GLY
7
A
GLY
7
1
Y
1
A
PRO
8
A
PRO
8
1
Y
1
A
GLU
9
A
GLU
9
1
Y
1
A
GLU
10
A
GLU
10
1
Y
1
A
HIS
11
A
HIS
11
1
Y
1
A
PHE
12
A
PHE
12
1
Y
1
A
PRO
13
A
PRO
13
1
Y
1
A
GLU
14
A
GLU
14
1
Y
1
A
VAL
15
A
VAL
15
1
Y
1
A
PRO
16
A
PRO
16
1
Y
1
A
GLU
17
A
GLU
17
1
Y
1
A
ILE
18
A
ILE
18
1
Y
1
A
GLU
19
A
GLU
19
1
Y
1
A
PRO
20
A
PRO
20
1
Y
1
A
MET
21
A
MET
21
1
Y
1
A
GLY
327
A
GLY
327
1
Y
1
A
ASN
328
A
ASN
328
1
Y
1
A
TYR
329
A
TYR
329
1
Y
1
A
LYS
330
A
LYS
330
1
Y
1
7.52
0.90
118.30
125.82
A
A
A
CB
CG
OD2
ASP
ASP
ASP
53
53
53
N
1
5.82
0.90
118.30
124.12
A
A
A
CB
CG
OD2
ASP
ASP
ASP
71
71
71
N
1
-3.21
0.50
120.30
117.09
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
243
243
243
N
1
-4.93
0.80
107.30
102.37
A
A
A
CE2
CD2
CG
TRP
TRP
TRP
308
308
308
N
1
A
A
CD
OE1
GLU
GLU
309
309
0.159
0.011
1.252
1.411
N
1
A
A
CD
OE2
GLU
GLU
309
309
0.223
0.011
1.252
1.475
N
1
A
ARG
28
91.19
-19.91
1
A
ASN
62
-126.60
-160.38
1
A
ASN
86
-115.74
-154.86
1
A
ASN
131
-120.66
-155.34
1
A
LEU
157
-39.58
130.01
1
A
THR
181
-117.46
-169.17
1
A
ASN
202
-103.14
-150.15
1
A
ASN
226
-118.28
-161.45
1
A
THR
239
-115.13
69.83
1
A
ASN
250
-133.88
-157.65
39.491
1.92
0.00
0.00
0.19
0.00
-2.11
0.957
0.953
0.21747
0.18951
0.19093
0.19093
2.15
33.00
1253
24591
24591
5.1
98.69
7.575
0.102
RANDOM
LIKELY RESIDUAL
1
THROUGHOUT
0.000
SIRAS
0.186
0.159
0.80
0.80
1.20
Engh & Huber
MASK
0.159
0.186
33
0.102
2.15
33.00
164
2585
50
0
2371
0.021
0.022
2470
0.001
0.020
1
1.719
1.991
3352
0.539
3.000
2
5.519
5.000
304
43.917
25.600
100
15.199
15.000
442
14.684
15.000
9
0.117
0.200
393
0.008
0.020
1797
0.001
0.020
1
0.214
0.200
1016
0.287
0.200
2
0.308
0.200
1624
0.239
0.200
2
0.147
0.200
150
0.250
0.200
35
0.132
0.200
12
1.049
1.500
1587
0.032
1.500
1
1.632
2.000
2481
2.973
3.000
990
4.702
4.500
871
0.337
0.244
2.206
74
1545
1619
20
89.35
32.2
2.15
33.2
1XKU
24593
24593
0.000
0.000
0.048
1
8.7
10.7
98.7
2.15
2.28
2.1
3266
0.367
1
8.2
93.7
refinement
REFMAC
5.2.0003
data reduction
MOSFLM
data scaling
CCP4
(TRUNCATE)
phasing
SHARP
Decorin
Crystal structure of the dimeric protein core of decorin, the archetypal small leucine-rich repeat proteoglycan
1
N
N
2
N
N
2
N
N
2
N
N
3
N
N
4
N
N
The second part of the biological assembly is generated by the two-fold axis -x, y, -z+1/2
A
ARG
137
A
ARG
137
HELX_P
A
ASN
142
A
ASN
142
1
1
6
A
LYS
158
A
LYS
158
HELX_P
A
ILE
162
A
ILE
162
5
2
5
A
GLY
165
A
GLY
165
HELX_P
A
MET
170
A
MET
170
5
3
6
A
ALA
209
A
ALA
209
HELX_P
A
LYS
213
A
LYS
213
5
4
5
A
SER
235
A
SER
235
HELX_P
A
THR
239
A
THR
239
5
5
5
A
GLN
306
A
GLN
306
HELX_P
A
ILE
310
A
ILE
310
5
6
5
A
GLN
311
A
GLN
311
HELX_P
A
ARG
316
A
ARG
316
5
7
6
A
VAL
320
A
VAL
320
HELX_P
A
ALA
322
A
ALA
322
5
8
3
disulf
2.057
A
CYS
25
A
SG
CYS
25
1_555
A
CYS
31
A
SG
CYS
31
1_555
disulf
2.089
A
CYS
29
A
SG
CYS
29
1_555
A
CYS
38
A
SG
CYS
38
1_555
disulf
2.086
A
CYS
284
A
SG
CYS
284
1_555
A
CYS
317
A
SG
CYS
317
1_555
covale
1.460
one
N-Glycosylation
A
ASN
182
A
ND2
ASN
182
1_555
A
NAG
800
B
C1
NAG
1_555
covale
1.446
one
N-Glycosylation
A
ASN
233
A
ND2
ASN
233
1_555
A
NAG
801
C
C1
NAG
1_555
covale
1.446
one
N-Glycosylation
A
ASN
274
A
ND2
ASN
274
1_555
A
NAG
802
D
C1
NAG
1_555
STRUCTURAL PROTEIN
Proteoglycan, Leucine-rich repeat, STRUCTURAL PROTEIN
PGS2_BOVIN
UNP
1
31
P21793
DEASGIGPEEHFPEVPEIEPMGPVCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHT
LILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS
GIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP
HLRELHLNNNKLAKVPGGVADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV
RAAVQLGNYK
31
360
1XKU
1
330
P21793
A
1
1
330
1
ALA
SEE REMARK 999
VAL
253
1XKU
A
P21793
UNP
283
253
1
VAL
SEE REMARK 999
LEU
259
1XKU
A
P21793
UNP
289
259
14
2
anti-parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
A
GLN
30
A
GLN
30
A
HIS
32
A
HIS
32
A
VAL
35
A
VAL
35
A
GLN
37
A
GLN
37
A
LEU
56
A
LEU
56
A
ASP
58
A
ASP
58
A
THR
80
A
THR
80
A
ILE
82
A
ILE
82
A
ARG
104
A
ARG
104
A
TYR
106
A
TYR
106
A
GLU
125
A
GLU
125
A
ARG
127
A
ARG
127
A
VAL
149
A
VAL
149
A
GLU
151
A
GLU
151
A
TYR
175
A
TYR
175
A
ARG
177
A
ARG
177
A
GLU
196
A
GLU
196
A
HIS
198
A
HIS
198
A
LYS
220
A
LYS
220
A
GLY
222
A
GLY
222
A
GLU
244
A
GLU
244
A
HIS
246
A
HIS
246
A
VAL
267
A
VAL
267
A
TYR
269
A
TYR
269
A
GLY
297
A
GLY
297
A
SER
299
A
SER
299
A
VAL
324
A
VAL
324
A
GLN
325
A
GLN
325
A
LYS
206
A
LYS
206
A
VAL
207
A
VAL
207
A
ALA
230
A
ALA
230
A
VAL
231
A
VAL
231
20
C 2 2 21