0.017271 0.000000 0.000000 0.000000 0.011655 0.000000 0.000000 0.000000 0.021368 0.00000 0.00000 0.00000 Boettcher, J. Specker, E. Heine, A. Klebe, G. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 57.9 85.8 46.8 C31 H37 Br F N O5 S 634.597 N-{(1S)-1-(3-BROMOBENZYL)-4-[(4-BROMOPHENYL)SULFONYL]-6-METHYL-2-OXOHEPTYL}-2-(2,6-DIMETHYLPHENOXY)ACETAMIDE non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Cl -1 35.453 CHLORIDE ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Y 1 N C Y 2 N C N 3 N C Y 4 N C Y 5 N C Y 6 N C Y 7 N C N 8 N C N 9 N O N 10 N C N 11 N C N 12 N O N 13 N N N 14 S C N 15 N C Y 16 N C Y 17 N C Y 18 N C Y 19 N C N 20 N BR Y 21 N C Y 22 N C N 23 R C N 24 N O N 25 N C N 26 S C N 27 N S N 28 N O N 29 N O Y 30 N C Y 31 N C Y 32 N C Y 33 N C N 34 N F Y 35 N C Y 36 N C N 37 N C N 38 N C N 39 N C N 40 N C N 41 N H N 42 N H N 43 N H N 44 N H N 45 N H N 46 N H N 47 N H N 48 N H N 49 N H N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N N N 79 S C N 80 N C N 81 N O N 82 N C N 83 N O N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N N N 92 S C N 93 N C N 94 N O N 95 N C N 96 N C N 97 N C N 98 N N N 99 N C N 100 N N N 101 N N N 102 N O N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N N N 119 S C N 120 N C N 121 N O N 122 N C N 123 N C N 124 N O N 125 N N N 126 N O N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N N N 136 S C N 137 N C N 138 N O N 139 N C N 140 N C N 141 N O N 142 N O N 143 N O N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N CL N 152 N N N 153 R C N 154 N C N 155 N O N 156 N C N 157 N S N 158 N O N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N N N 167 S C N 168 N C N 169 N O N 170 N C N 171 N C N 172 N C N 173 N O N 174 N N N 175 N O N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N N N 187 S C N 188 N C N 189 N O N 190 N C N 191 N C N 192 N C N 193 N O N 194 N O N 195 N O N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 N C N 207 N C N 208 N O N 209 N O N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N N N 216 S C N 217 N C N 218 N O N 219 N C Y 220 N C Y 221 N N Y 222 N C Y 223 N C Y 224 N N N 225 N O N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N O N 237 N H N 238 N H N 239 N N N 240 S C N 241 N C N 242 N O N 243 S C N 244 N C N 245 N C N 246 N C N 247 N O N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N N N 262 S C N 263 N C N 264 N O N 265 N C N 266 N C N 267 N C N 268 N C N 269 N O N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N N N 284 S C N 285 N C N 286 N O N 287 N C N 288 N C N 289 N C N 290 N C N 291 N N N 292 N O N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N N N 309 S C N 310 N C N 311 N O N 312 N C N 313 N C N 314 N S N 315 N C N 316 N O N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N N N 329 S C N 330 N C N 331 N O N 332 N C Y 333 N C Y 334 N C Y 335 N C Y 336 N C Y 337 N C Y 338 N C N 339 N O N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N N N 352 S C N 353 N C N 354 N O N 355 N C N 356 N C N 357 N C N 358 N O N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N N N 369 S C N 370 N C N 371 N O N 372 N C N 373 N O N 374 N O N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N N N 383 S C N 384 N C N 385 N O N 386 R C N 387 N O N 388 N C N 389 N O N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N N N 400 S C N 401 N C N 402 N O N 403 N C Y 404 N C Y 405 N C Y 406 N C Y 407 N N Y 408 N C Y 409 N C Y 410 N C Y 411 N C Y 412 N C N 413 N O N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N N N 427 S C N 428 N C N 429 N O N 430 N C Y 431 N C Y 432 N C Y 433 N C Y 434 N C Y 435 N C Y 436 N C N 437 N O N 438 N O N 439 N H N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N N N 451 S C N 452 N C N 453 N O N 454 N C N 455 N C N 456 N C N 457 N O N 458 N H N 459 N H N 460 N H N 461 N H N 462 N H N 463 N H N 464 N H N 465 N H N 466 N H N 467 N H N 468 N H Y 1 N doub Y 2 N sing N 3 N sing N 4 N sing Y 5 N sing N 6 N sing N 7 N sing N 8 N sing Y 9 N doub N 10 N sing Y 11 N sing N 12 N sing Y 13 N doub N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N doub N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing Y 33 N doub Y 34 N sing Y 35 N sing N 36 N sing Y 37 N doub N 38 N sing Y 39 N sing N 40 N sing N 41 N sing Y 42 N doub N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N doub N 55 N doub N 56 N sing Y 57 N doub Y 58 N sing Y 59 N sing N 60 N sing Y 61 N doub N 62 N sing N 63 N sing Y 64 N sing Y 65 N doub N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N doub N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N doub N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N doub N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N doub N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N doub N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N doub N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N doub N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N doub N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N doub N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N doub N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N doub N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N doub N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N doub N 215 N sing N 216 N sing N 217 N sing N 218 N sing Y 219 N sing Y 220 N doub Y 221 N doub N 222 N sing Y 223 N sing N 224 N sing Y 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N doub N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N doub N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N doub N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N doub N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N doub N 323 N sing N 324 N sing N 325 N sing N 326 N sing Y 327 N doub Y 328 N sing Y 329 N sing N 330 N sing Y 331 N doub N 332 N sing Y 333 N doub N 334 N sing Y 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N doub N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N doub N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N doub N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N doub N 392 N sing N 393 N sing N 394 N sing N 395 N sing Y 396 N doub Y 397 N sing Y 398 N sing N 399 N sing Y 400 N doub Y 401 N sing Y 402 N sing N 403 N sing Y 404 N sing Y 405 N doub N 406 N sing Y 407 N doub N 408 N sing Y 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N doub N 420 N sing N 421 N sing N 422 N sing N 423 N sing Y 424 N doub Y 425 N sing Y 426 N sing N 427 N sing Y 428 N doub N 429 N sing Y 430 N doub N 431 N sing Y 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N doub N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing GE Angew.Chem.Int.Ed.Engl. ACIEAY 0179 0570-0833 44 3140 3144 10.1002/anie.200462643 15822136 An Old Target Revisited: Two New Privileged Skeletons and an Unexpected Binding Mode For HIV-Protease Inhibitors 2005 10.2210/pdb1xl5/pdb pdb_00001xl5 103 1 silicon mirrors, double silicon crystal CCD 2004-05-27 MARRESEARCH double crystal monochromator SINGLE WAVELENGTH M x-ray 1 0.9184 1.0 14.1 BESSY 0.9184 SYNCHROTRON BESSY BEAMLINE 14.1 10803.756 PROTEASE RETROPEPSIN 3.4.23.16 2 man polymer 35.453 CHLORIDE ION 3 syn non-polymer 634.597 N-{(1S)-1-(3-BROMOBENZYL)-4-[(4-BROMOPHENYL)SULFONYL]-6-METHYL-2-OXOHEPTYL}-2-(2,6-DIMETHYLPHENOXY)ACETAMIDE 1 syn non-polymer 18.015 water 207 nat water HIV-1 PROTEASE E.C.3.4.23.16 no no PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Lentivirus Escherichia Escherichia coli sample gag-pol 11676 Human immunodeficiency virus 1 469008 Escherichia coli BL21(DE3) BL21 (DE3) plasmid p566 1 2.35 47.3 VAPOR DIFFUSION, SITTING DROP 6.5 NaCl, Bis-Tris , pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K 293 software chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_site repository Initial release Version format compliance Version format compliance Refinement description Data collection Database references Derived calculations Refinement description 1 0 2005-06-07 1 1 2008-04-30 1 2 2011-07-13 1 3 2017-10-11 1 4 2023-08-23 _software.classification _software.name _software.version _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id HIV-1 Protease in complex with C(2) Symmetry-Based-Inhibitor HIV-1 Protease in complex with cyclic sulfonamide N RCSB Y RCSB 2004-09-30 REL REL CL CHLORIDE ION 190 N-{(1S)-1-(3-BROMOBENZYL)-4-[(4-BROMOPHENYL)SULFONYL]-6-METHYL-2-OXOHEPTYL}-2-(2,6-DIMETHYLPHENOXY)ACETAMIDE HOH water 1EC0 PDB experimental model CL 2602 2 CL CL 2602 A CL 2601 2 CL CL 2601 B CL 2603 2 CL CL 2603 B 190 1001 3 190 190 1001 B HOH 1 4 HOH HOH 2603 A HOH 3 4 HOH HOH 2604 A HOH 4 4 HOH HOH 2605 A HOH 6 4 HOH HOH 2606 A HOH 7 4 HOH HOH 2607 A HOH 15 4 HOH HOH 2608 A HOH 16 4 HOH HOH 2609 A HOH 17 4 HOH HOH 2610 A HOH 22 4 HOH HOH 2611 A HOH 23 4 HOH HOH 2612 A HOH 29 4 HOH HOH 2613 A HOH 30 4 HOH HOH 2614 A HOH 33 4 HOH HOH 2615 A HOH 35 4 HOH HOH 2616 A HOH 38 4 HOH HOH 2617 A HOH 40 4 HOH HOH 2618 A HOH 41 4 HOH HOH 2619 A HOH 43 4 HOH HOH 2620 A HOH 44 4 HOH HOH 2621 A HOH 50 4 HOH HOH 2622 A HOH 53 4 HOH HOH 2623 A HOH 54 4 HOH HOH 2624 A HOH 55 4 HOH HOH 2625 A HOH 56 4 HOH HOH 2626 A HOH 57 4 HOH HOH 2627 A HOH 58 4 HOH HOH 2628 A HOH 62 4 HOH HOH 2629 A HOH 65 4 HOH HOH 2630 A HOH 69 4 HOH HOH 2631 A HOH 70 4 HOH HOH 2632 A HOH 71 4 HOH HOH 2633 A HOH 72 4 HOH HOH 2634 A HOH 74 4 HOH HOH 2635 A HOH 76 4 HOH HOH 2636 A HOH 77 4 HOH HOH 2637 A HOH 78 4 HOH HOH 2638 A HOH 80 4 HOH HOH 2639 A HOH 83 4 HOH HOH 2640 A HOH 86 4 HOH HOH 2641 A HOH 87 4 HOH HOH 2642 A HOH 88 4 HOH HOH 2643 A HOH 90 4 HOH HOH 2644 A HOH 92 4 HOH HOH 2645 A HOH 94 4 HOH HOH 2646 A HOH 98 4 HOH HOH 2647 A HOH 102 4 HOH HOH 2648 A HOH 103 4 HOH HOH 2649 A HOH 104 4 HOH HOH 2650 A HOH 111 4 HOH HOH 2651 A HOH 112 4 HOH HOH 2652 A HOH 114 4 HOH HOH 2653 A HOH 115 4 HOH HOH 2654 A HOH 117 4 HOH HOH 2655 A HOH 120 4 HOH HOH 2656 A HOH 122 4 HOH HOH 2657 A HOH 123 4 HOH HOH 2658 A HOH 131 4 HOH HOH 2659 A HOH 134 4 HOH HOH 2660 A HOH 138 4 HOH HOH 2661 A HOH 139 4 HOH HOH 2662 A HOH 140 4 HOH HOH 2663 A HOH 141 4 HOH HOH 2664 A HOH 143 4 HOH HOH 2665 A HOH 144 4 HOH HOH 2666 A HOH 145 4 HOH HOH 2667 A HOH 148 4 HOH HOH 2668 A HOH 150 4 HOH HOH 2669 A HOH 151 4 HOH HOH 2670 A HOH 152 4 HOH HOH 2671 A HOH 156 4 HOH HOH 2672 A HOH 158 4 HOH HOH 2673 A HOH 160 4 HOH HOH 2674 A HOH 161 4 HOH HOH 2675 A HOH 164 4 HOH HOH 2676 A HOH 165 4 HOH HOH 2677 A HOH 167 4 HOH HOH 2678 A HOH 168 4 HOH HOH 2679 A HOH 169 4 HOH HOH 2680 A HOH 171 4 HOH HOH 2681 A HOH 173 4 HOH HOH 2682 A HOH 174 4 HOH HOH 2683 A HOH 175 4 HOH HOH 2684 A HOH 177 4 HOH HOH 2685 A HOH 179 4 HOH HOH 2686 A HOH 184 4 HOH HOH 2687 A HOH 188 4 HOH HOH 2688 A HOH 190 4 HOH HOH 2689 A HOH 192 4 HOH HOH 2690 A HOH 193 4 HOH HOH 2691 A HOH 195 4 HOH HOH 2692 A HOH 198 4 HOH HOH 2693 A HOH 204 4 HOH HOH 2694 A HOH 214 4 HOH HOH 2695 A HOH 219 4 HOH HOH 2696 A HOH 2 4 HOH HOH 2604 B HOH 5 4 HOH HOH 2605 B HOH 8 4 HOH HOH 2606 B HOH 9 4 HOH HOH 2607 B HOH 10 4 HOH HOH 2608 B HOH 11 4 HOH HOH 2609 B HOH 12 4 HOH HOH 2610 B HOH 13 4 HOH HOH 2611 B HOH 14 4 HOH HOH 2612 B HOH 18 4 HOH HOH 2613 B HOH 19 4 HOH HOH 2614 B HOH 20 4 HOH HOH 2615 B HOH 21 4 HOH HOH 2616 B HOH 24 4 HOH HOH 2617 B HOH 25 4 HOH HOH 2618 B HOH 26 4 HOH HOH 2619 B HOH 27 4 HOH HOH 2620 B HOH 28 4 HOH HOH 2621 B HOH 31 4 HOH HOH 2622 B HOH 32 4 HOH HOH 2623 B HOH 34 4 HOH HOH 2624 B HOH 36 4 HOH HOH 2625 B HOH 37 4 HOH HOH 2626 B HOH 39 4 HOH HOH 2627 B HOH 42 4 HOH HOH 2628 B HOH 45 4 HOH HOH 2629 B HOH 46 4 HOH HOH 2630 B HOH 47 4 HOH HOH 2631 B HOH 48 4 HOH HOH 2632 B HOH 49 4 HOH HOH 2633 B HOH 51 4 HOH HOH 2634 B HOH 52 4 HOH HOH 2635 B HOH 59 4 HOH HOH 2636 B HOH 60 4 HOH HOH 2637 B HOH 61 4 HOH HOH 2638 B HOH 63 4 HOH HOH 2639 B HOH 64 4 HOH HOH 2640 B HOH 66 4 HOH HOH 2641 B HOH 67 4 HOH HOH 2642 B HOH 68 4 HOH HOH 2643 B HOH 73 4 HOH HOH 2644 B HOH 75 4 HOH HOH 2645 B HOH 79 4 HOH HOH 2646 B HOH 81 4 HOH HOH 2647 B HOH 82 4 HOH HOH 2648 B HOH 84 4 HOH HOH 2649 B HOH 85 4 HOH HOH 2650 B HOH 89 4 HOH HOH 2651 B HOH 91 4 HOH HOH 2652 B HOH 93 4 HOH HOH 2653 B HOH 95 4 HOH HOH 2654 B HOH 96 4 HOH HOH 2655 B HOH 97 4 HOH HOH 2656 B HOH 99 4 HOH HOH 2657 B HOH 100 4 HOH HOH 2658 B HOH 101 4 HOH HOH 2659 B HOH 105 4 HOH HOH 2660 B HOH 106 4 HOH HOH 2661 B HOH 107 4 HOH HOH 2662 B HOH 108 4 HOH HOH 2663 B HOH 109 4 HOH HOH 2664 B HOH 110 4 HOH HOH 2665 B HOH 113 4 HOH HOH 2666 B HOH 116 4 HOH HOH 2667 B HOH 118 4 HOH HOH 2668 B HOH 119 4 HOH HOH 2669 B HOH 121 4 HOH HOH 2670 B HOH 124 4 HOH HOH 2671 B HOH 125 4 HOH HOH 2672 B HOH 126 4 HOH HOH 2673 B HOH 127 4 HOH HOH 2674 B HOH 128 4 HOH HOH 2675 B HOH 129 4 HOH HOH 2676 B HOH 130 4 HOH HOH 2677 B HOH 132 4 HOH HOH 2678 B HOH 133 4 HOH HOH 2679 B HOH 135 4 HOH HOH 2680 B HOH 136 4 HOH HOH 2681 B HOH 137 4 HOH HOH 2682 B HOH 142 4 HOH HOH 2683 B HOH 146 4 HOH HOH 2684 B HOH 147 4 HOH HOH 2685 B HOH 149 4 HOH HOH 2686 B HOH 153 4 HOH HOH 2687 B HOH 154 4 HOH HOH 2688 B HOH 155 4 HOH HOH 2689 B HOH 157 4 HOH HOH 2690 B HOH 159 4 HOH HOH 2691 B HOH 162 4 HOH HOH 2692 B HOH 163 4 HOH HOH 2693 B HOH 166 4 HOH HOH 2694 B HOH 170 4 HOH HOH 2695 B HOH 172 4 HOH HOH 2696 B HOH 176 4 HOH HOH 2697 B HOH 178 4 HOH HOH 2698 B HOH 180 4 HOH HOH 2699 B HOH 181 4 HOH HOH 2700 B HOH 182 4 HOH HOH 2701 B HOH 183 4 HOH HOH 2702 B HOH 185 4 HOH HOH 2703 B HOH 186 4 HOH HOH 2704 B HOH 187 4 HOH HOH 2705 B HOH 189 4 HOH HOH 2706 B HOH 191 4 HOH HOH 2707 B HOH 194 4 HOH HOH 2708 B HOH 197 4 HOH HOH 2709 B HOH 199 4 HOH HOH 2710 B HOH 200 4 HOH HOH 2711 B HOH 201 4 HOH HOH 2712 B HOH 203 4 HOH HOH 2713 B HOH 212 4 HOH HOH 2714 B HOH 213 4 HOH HOH 2715 B HOH 218 4 HOH HOH 2716 B PRO 1 n 1 PRO 1 A GLN 2 n 2 GLN 2 A ILE 3 n 3 ILE 3 A THR 4 n 4 THR 4 A LEU 5 n 5 LEU 5 A TRP 6 n 6 TRP 6 A GLN 7 n 7 GLN 7 A ARG 8 n 8 ARG 8 A PRO 9 n 9 PRO 9 A LEU 10 n 10 LEU 10 A VAL 11 n 11 VAL 11 A THR 12 n 12 THR 12 A ILE 13 n 13 ILE 13 A LYS 14 n 14 LYS 14 A ILE 15 n 15 ILE 15 A GLY 16 n 16 GLY 16 A GLY 17 n 17 GLY 17 A GLN 18 n 18 GLN 18 A LEU 19 n 19 LEU 19 A LYS 20 n 20 LYS 20 A GLU 21 n 21 GLU 21 A ALA 22 n 22 ALA 22 A LEU 23 n 23 LEU 23 A LEU 24 n 24 LEU 24 A ASP 25 n 25 ASP 25 A THR 26 n 26 THR 26 A GLY 27 n 27 GLY 27 A ALA 28 n 28 ALA 28 A ASP 29 n 29 ASP 29 A ASP 30 n 30 ASP 30 A THR 31 n 31 THR 31 A VAL 32 n 32 VAL 32 A LEU 33 n 33 LEU 33 A GLU 34 n 34 GLU 34 A GLU 35 n 35 GLU 35 A MET 36 n 36 MET 36 A SER 37 n 37 SER 37 A LEU 38 n 38 LEU 38 A PRO 39 n 39 PRO 39 A GLY 40 n 40 GLY 40 A ARG 41 n 41 ARG 41 A TRP 42 n 42 TRP 42 A LYS 43 n 43 LYS 43 A PRO 44 n 44 PRO 44 A LYS 45 n 45 LYS 45 A MET 46 n 46 MET 46 A ILE 47 n 47 ILE 47 A GLY 48 n 48 GLY 48 A GLY 49 n 49 GLY 49 A ILE 50 n 50 ILE 50 A GLY 51 n 51 GLY 51 A GLY 52 n 52 GLY 52 A PHE 53 n 53 PHE 53 A ILE 54 n 54 ILE 54 A LYS 55 n 55 LYS 55 A VAL 56 n 56 VAL 56 A ARG 57 n 57 ARG 57 A GLN 58 n 58 GLN 58 A TYR 59 n 59 TYR 59 A ASP 60 n 60 ASP 60 A GLN 61 n 61 GLN 61 A ILE 62 n 62 ILE 62 A LEU 63 n 63 LEU 63 A ILE 64 n 64 ILE 64 A GLU 65 n 65 GLU 65 A ILE 66 n 66 ILE 66 A CYS 67 n 67 CYS 67 A GLY 68 n 68 GLY 68 A HIS 69 n 69 HIS 69 A LYS 70 n 70 LYS 70 A ALA 71 n 71 ALA 71 A ILE 72 n 72 ILE 72 A GLY 73 n 73 GLY 73 A THR 74 n 74 THR 74 A VAL 75 n 75 VAL 75 A LEU 76 n 76 LEU 76 A VAL 77 n 77 VAL 77 A GLY 78 n 78 GLY 78 A PRO 79 n 79 PRO 79 A THR 80 n 80 THR 80 A PRO 81 n 81 PRO 81 A VAL 82 n 82 VAL 82 A ASN 83 n 83 ASN 83 A ILE 84 n 84 ILE 84 A ILE 85 n 85 ILE 85 A GLY 86 n 86 GLY 86 A ARG 87 n 87 ARG 87 A ASN 88 n 88 ASN 88 A LEU 89 n 89 LEU 89 A LEU 90 n 90 LEU 90 A THR 91 n 91 THR 91 A GLN 92 n 92 GLN 92 A ILE 93 n 93 ILE 93 A GLY 94 n 94 GLY 94 A CYS 95 n 95 CYS 95 A THR 96 n 96 THR 96 A LEU 97 n 97 LEU 97 A ASN 98 n 98 ASN 98 A PHE 99 n 99 PHE 99 A PRO 1 n 1 PRO 1 B GLN 2 n 2 GLN 2 B ILE 3 n 3 ILE 3 B THR 4 n 4 THR 4 B LEU 5 n 5 LEU 5 B TRP 6 n 6 TRP 6 B GLN 7 n 7 GLN 7 B ARG 8 n 8 ARG 8 B PRO 9 n 9 PRO 9 B LEU 10 n 10 LEU 10 B VAL 11 n 11 VAL 11 B THR 12 n 12 THR 12 B ILE 13 n 13 ILE 13 B LYS 14 n 14 LYS 14 B ILE 15 n 15 ILE 15 B GLY 16 n 16 GLY 16 B GLY 17 n 17 GLY 17 B GLN 18 n 18 GLN 18 B LEU 19 n 19 LEU 19 B LYS 20 n 20 LYS 20 B GLU 21 n 21 GLU 21 B ALA 22 n 22 ALA 22 B LEU 23 n 23 LEU 23 B LEU 24 n 24 LEU 24 B ASP 25 n 25 ASP 25 B THR 26 n 26 THR 26 B GLY 27 n 27 GLY 27 B ALA 28 n 28 ALA 28 B ASP 29 n 29 ASP 29 B ASP 30 n 30 ASP 30 B THR 31 n 31 THR 31 B VAL 32 n 32 VAL 32 B LEU 33 n 33 LEU 33 B GLU 34 n 34 GLU 34 B GLU 35 n 35 GLU 35 B MET 36 n 36 MET 36 B SER 37 n 37 SER 37 B LEU 38 n 38 LEU 38 B PRO 39 n 39 PRO 39 B GLY 40 n 40 GLY 40 B ARG 41 n 41 ARG 41 B TRP 42 n 42 TRP 42 B LYS 43 n 43 LYS 43 B PRO 44 n 44 PRO 44 B LYS 45 n 45 LYS 45 B MET 46 n 46 MET 46 B ILE 47 n 47 ILE 47 B GLY 48 n 48 GLY 48 B GLY 49 n 49 GLY 49 B ILE 50 n 50 ILE 50 B GLY 51 n 51 GLY 51 B GLY 52 n 52 GLY 52 B PHE 53 n 53 PHE 53 B ILE 54 n 54 ILE 54 B LYS 55 n 55 LYS 55 B VAL 56 n 56 VAL 56 B ARG 57 n 57 ARG 57 B GLN 58 n 58 GLN 58 B TYR 59 n 59 TYR 59 B ASP 60 n 60 ASP 60 B GLN 61 n 61 GLN 61 B ILE 62 n 62 ILE 62 B LEU 63 n 63 LEU 63 B ILE 64 n 64 ILE 64 B GLU 65 n 65 GLU 65 B ILE 66 n 66 ILE 66 B CYS 67 n 67 CYS 67 B GLY 68 n 68 GLY 68 B HIS 69 n 69 HIS 69 B LYS 70 n 70 LYS 70 B ALA 71 n 71 ALA 71 B ILE 72 n 72 ILE 72 B GLY 73 n 73 GLY 73 B THR 74 n 74 THR 74 B VAL 75 n 75 VAL 75 B LEU 76 n 76 LEU 76 B VAL 77 n 77 VAL 77 B GLY 78 n 78 GLY 78 B PRO 79 n 79 PRO 79 B THR 80 n 80 THR 80 B PRO 81 n 81 PRO 81 B VAL 82 n 82 VAL 82 B ASN 83 n 83 ASN 83 B ILE 84 n 84 ILE 84 B ILE 85 n 85 ILE 85 B GLY 86 n 86 GLY 86 B ARG 87 n 87 ARG 87 B ASN 88 n 88 ASN 88 B LEU 89 n 89 LEU 89 B LEU 90 n 90 LEU 90 B THR 91 n 91 THR 91 B GLN 92 n 92 GLN 92 B ILE 93 n 93 ILE 93 B GLY 94 n 94 GLY 94 B CYS 95 n 95 CYS 95 B THR 96 n 96 THR 96 B LEU 97 n 97 LEU 97 B ASN 98 n 98 ASN 98 B PHE 99 n 99 PHE 99 B 0.1683 0.2014 19529 author_and_software_defined_assembly PISA 2 dimeric 5300 -42 9360 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ILE 3 A N ILE 3 B O LEU 97 B O LEU 97 B O ASN 98 B O ASN 98 A N THR 96 A N THR 96 A N LEU 97 A N LEU 97 B O ILE 3 B O ILE 3 A N LYS 43 A N LYS 43 A O GLN 58 A O GLN 58 A N ILE 64 A N ILE 64 A O ALA 71 A O ALA 71 A O LEU 76 A O LEU 76 A N LEU 33 A N LEU 33 A N VAL 32 A N VAL 32 A O ILE 84 A O ILE 84 A O ILE 85 A O ILE 85 A N LEU 23 A N LEU 23 A O ALA 22 A O ALA 22 A N VAL 11 A N VAL 11 A N LYS 14 A N LYS 14 A O GLU 65 A O GLU 65 B N LYS 43 B N LYS 43 B O GLN 58 B O GLN 58 B N TYR 59 B N TYR 59 B O VAL 75 B O VAL 75 B O LEU 76 B O LEU 76 B N LEU 33 B N LEU 33 B N VAL 32 B N VAL 32 B O ILE 84 B O ILE 84 B O ILE 85 B O ILE 85 B N LEU 23 B N LEU 23 B O LYS 20 B O LYS 20 B N ILE 13 B N ILE 13 B N LYS 14 B N LYS 14 B O GLU 65 B O GLU 65 1 22.51 1.40 123.60 146.11 A A A CD NE CZ ARG ARG ARG 57 57 57 N 1 4.07 0.50 120.30 124.37 A A A NE CZ NH2 ARG ARG ARG 57 57 57 N 1 3.34 0.50 120.30 123.64 A A A NE CZ NH1 ARG ARG ARG 87 87 87 N ANISOTROPIC SCALING APPLIED BY THE METHOD OF PARKIN, MOEZZI & HOPE, J.APPL.CRYST.28(1995)53-56 0.2469 0.2006 0.2014 0.2006 1.73 8.00 7079 1209 24150 22941 6367 5.3 97.5 RANDOM 1 FREE R 0.0 MOLECULAR REPLACEMENT 1EC0 ENGH AND HUBER 0 1604.00 1766.00 1.73 8.00 207 1766 43 0 1516 0.007 0.024 0.000 0.0268 0.036 0.042 0.014 0.000 0.070 0.000 1.73 25. 1XL5 24462 24462 0 0 0.078 1 12.8 4.3 97.6 1.73 1.76 1.7 0.452 2.1 79.3 data collection MAR345 data reduction DENZO 2000 data scaling SCALEPACK 2000 phasing AMoRE refinement SHELXL-97 data scaling HKL-2000 HIV-1 Protease in complex with amidhyroxysulfone 1 N N 1 N N 2 N N 2 N N 2 N N 3 N N 4 N N 4 N N A GLY 86 A GLY 86 HELX_P A THR 91 A THR 91 1 1 6 B GLY 86 B GLY 86 HELX_P B ILE 93 B ILE 93 1 2 8 HYDROLASE Aspartyl Protease, HIV Protease, Amidhydroxysulfone Inhibitor, HYDROLASE POL_HV1BR UNP 1 69 P03367 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF 69 167 1XL5 1 99 P03367 A 1 1 99 69 167 1XL5 1 99 P03367 B 1 1 99 4 8 8 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel anti-parallel A GLN 2 A GLN 2 A ILE 3 A ILE 3 B THR 96 B THR 96 B ASN 98 B ASN 98 A THR 96 A THR 96 A ASN 98 A ASN 98 B GLN 2 B GLN 2 B ILE 3 B ILE 3 A LYS 43 A LYS 43 A GLY 49 A GLY 49 A GLY 52 A GLY 52 A ILE 66 A ILE 66 A HIS 69 A HIS 69 A VAL 77 A VAL 77 A THR 31 A THR 31 A LEU 33 A LEU 33 A ILE 84 A ILE 84 A ILE 85 A ILE 85 A GLN 18 A GLN 18 A LEU 24 A LEU 24 A LEU 10 A LEU 10 A ILE 15 A ILE 15 A GLY 52 A GLY 52 A ILE 66 A ILE 66 B LYS 43 B LYS 43 B GLY 48 B GLY 48 B PHE 53 B PHE 53 B ILE 66 B ILE 66 B HIS 69 B HIS 69 B VAL 77 B VAL 77 B VAL 32 B VAL 32 B LEU 33 B LEU 33 B ILE 84 B ILE 84 B ILE 85 B ILE 85 B GLN 18 B GLN 18 B LEU 24 B LEU 24 B LEU 10 B LEU 10 B ILE 15 B ILE 15 B PHE 53 B PHE 53 B ILE 66 B ILE 66 BINDING SITE FOR RESIDUE CL B 2601 B CL 2601 Software 2 BINDING SITE FOR RESIDUE CL A 2602 A CL 2602 Software 4 BINDING SITE FOR RESIDUE CL B 2603 B CL 2603 Software 3 BINDING SITE FOR RESIDUE 190 B 1001 B 190 1001 Software 17 B TRP 6 B TRP 6 2 3_545 B HOH 2699 H HOH 2 1_555 A THR 74 A THR 74 4 1_555 A ASN 88 A ASN 88 4 1_555 A HOH 2664 G HOH 4 1_555 B ARG 41 B ARG 41 4 3_555 B THR 74 B THR 74 3 1_555 B ASN 88 B ASN 88 3 1_555 B HOH 2651 H HOH 3 1_555 A ARG 8 A ARG 8 17 1_555 A ASP 25 A ASP 25 17 1_555 A GLY 27 A GLY 27 17 1_555 A ALA 28 A ALA 28 17 1_555 A ASP 30 A ASP 30 17 1_555 A GLY 48 A GLY 48 17 1_555 A VAL 82 A VAL 82 17 1_555 B ASP 25 B ASP 25 17 1_555 B GLY 27 B GLY 27 17 1_555 B ALA 28 B ALA 28 17 1_555 B ASP 29 B ASP 29 17 1_555 B ASP 30 B ASP 30 17 1_555 B ILE 47 B ILE 47 17 1_555 B GLY 48 B GLY 48 17 1_555 B GLY 49 B GLY 49 17 1_555 B ILE 50 B ILE 50 17 1_555 B HOH 2646 H HOH 17 1_555 18 orthorhombic P 21 21 2