0.009957
0.000000
0.000000
0.000000
0.009957
0.000000
0.000000
0.000000
0.022353
0.00000
0.00000
0.00000
Caruthers, J.
Merritt, E.A.
Structural Genomics of Pathogenic Protozoa Consortium (SGPP)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.000
90.000
90.000
100.431
100.431
44.736
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
N
N
159
S
C
N
160
N
C
N
161
N
O
N
162
S
C
N
163
N
C
N
164
N
C
N
165
N
C
N
166
N
O
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
N
N
181
S
C
N
182
N
C
N
183
N
O
N
184
N
C
N
185
N
C
N
186
N
C
N
187
N
C
N
188
N
O
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
N
N
203
S
C
N
204
N
C
N
205
N
O
N
206
N
C
N
207
N
C
N
208
N
C
N
209
N
C
N
210
N
N
N
211
N
O
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
N
N
228
S
C
N
229
N
C
N
230
N
O
N
231
N
C
N
232
N
C
N
233
N
S
N
234
N
C
N
235
N
O
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
N
N
248
S
C
N
249
N
C
N
250
N
O
N
251
N
C
Y
252
N
C
Y
253
N
C
Y
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
N
258
N
O
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
N
N
271
S
C
N
272
N
C
N
273
N
O
N
274
N
C
N
275
N
C
N
276
N
C
N
277
N
O
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
N
N
288
S
C
N
289
N
C
N
290
N
O
N
291
N
C
N
292
N
O
N
293
N
O
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
N
N
302
S
C
N
303
N
C
N
304
N
O
N
305
R
C
N
306
N
O
N
307
N
C
N
308
N
O
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
N
N
319
S
C
N
320
N
C
N
321
N
O
N
322
N
C
Y
323
N
C
Y
324
N
C
Y
325
N
C
Y
326
N
N
Y
327
N
C
Y
328
N
C
Y
329
N
C
Y
330
N
C
Y
331
N
C
N
332
N
O
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
N
N
346
S
C
N
347
N
C
N
348
N
O
N
349
N
C
Y
350
N
C
Y
351
N
C
Y
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
N
356
N
O
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
N
N
370
S
C
N
371
N
C
N
372
N
O
N
373
N
C
N
374
N
C
N
375
N
C
N
376
N
O
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
doub
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
doub
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
doub
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
doub
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
doub
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
Y
246
N
doub
Y
247
N
sing
Y
248
N
sing
N
249
N
sing
Y
250
N
doub
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
doub
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
doub
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
doub
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
doub
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
Y
315
N
doub
Y
316
N
sing
Y
317
N
sing
N
318
N
sing
Y
319
N
doub
Y
320
N
sing
Y
321
N
sing
N
322
N
sing
Y
323
N
sing
Y
324
N
doub
N
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
doub
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
Y
343
N
doub
Y
344
N
sing
Y
345
N
sing
N
346
N
sing
Y
347
N
doub
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
doub
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
US
Protein Sci.
PRCIEI
0795
0961-8368
14
2887
2894
10.1110/ps.051783005
16199669
Crystal structures and proposed structural/functional classification of three protozoan proteins from the isochorismatase superfamily.
2005
10.2210/pdb1xn4/pdb
pdb_00001xn4
1
CCD
2003-11-13
ADSC QUANTUM 315
SINGLE WAVELENGTH
M
x-ray
1
0.9795
1.0
8.2.2
ALS
0.9795
SYNCHROTRON
ALS BEAMLINE 8.2.2
21615.312
ribonuclease MAR1
1
man
polymer
no
no
MSRLMPHYSKGKTAFLCVDLQEAFSKRIENFANCVFVANRLARLHELVPENTKYIVTEHYPKGLGRIVPGITLPQTAHLI
EKTRFSCIVPQVEELLEDVDNAVVFGIEGHACILQTVADLLDMNKRVFLPKDGLGSQKKTDFKAAMKLMGSWSPNCEITT
SESILLQMTKDAMDPNFKKISKLLKEEPPIPL
MSRLMPHYSKGKTAFLCVDLQEAFSKRIENFANCVFVANRLARLHELVPENTKYIVTEHYPKGLGRIVPGITLPQTAHLI
EKTRFSCIVPQVEELLEDVDNAVVFGIEGHACILQTVADLLDMNKRVFLPKDGLGSQKKTDFKAAMKLMGSWSPNCEITT
SESILLQMTKDAMDPNFKKISKLLKEEPPIPL
A
Lmaj001686AAA
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Leishmania
Escherichia
sample
5664
Leishmania major
562
Escherichia coli
plasmid
SGPP target construct Lmaj001686AAA
pET3a
1
2.61
52.86
7.20
16% PEG 8000, 0.1 M K2HPO4, 0.1M MOPS pH7.2, VAPOR DIFFUSION, SITTING DROP, temperature 290K, pH 7.20
290
Structural Genomics of Pathogenic Protozoa Consortium
SGPP
PSI, Protein Structure Initiative
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Advisory
Derived calculations
Version format compliance
Database references
Data collection
Database references
Refinement description
1
0
2004-10-12
1
1
2008-04-30
1
2
2011-07-13
1
3
2012-10-24
1
4
2023-08-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
SEQUENCE
This protein is a putative homologue of the MAR1
endoribonuclease from L tarentolae, SPTR O77166.
The closest Genbank sequence is the homologous
protein from L Major, Genbank identifier
LmjF12.0060.
Y
RCSB
Y
RCSB
2004-10-04
REL
REL
1X9G
PDB ENTRY 1X9G
PDB
experimental model
n
1
1
A
SER
2
n
2
SER
2
A
ARG
3
n
3
ARG
3
A
LEU
4
n
4
LEU
4
A
MET
5
n
5
MET
5
A
PRO
6
n
6
PRO
6
A
HIS
7
n
7
HIS
7
A
TYR
8
n
8
TYR
8
A
SER
9
n
9
SER
9
A
LYS
10
n
10
LYS
10
A
GLY
11
n
11
GLY
11
A
LYS
12
n
12
LYS
12
A
THR
13
n
13
THR
13
A
ALA
14
n
14
ALA
14
A
PHE
15
n
15
PHE
15
A
LEU
16
n
16
LEU
16
A
CYS
17
n
17
CYS
17
A
VAL
18
n
18
VAL
18
A
ASP
19
n
19
ASP
19
A
LEU
20
n
20
LEU
20
A
GLN
21
n
21
GLN
21
A
GLU
22
n
22
GLU
22
A
ALA
23
n
23
ALA
23
A
PHE
24
n
24
PHE
24
A
SER
25
n
25
SER
25
A
LYS
26
n
26
LYS
26
A
ARG
27
n
27
ARG
27
A
ILE
28
n
28
ILE
28
A
GLU
29
n
29
GLU
29
A
ASN
30
n
30
ASN
30
A
PHE
31
n
31
PHE
31
A
ALA
32
n
32
ALA
32
A
ASN
33
n
33
ASN
33
A
CYS
34
n
34
CYS
34
A
VAL
35
n
35
VAL
35
A
PHE
36
n
36
PHE
36
A
VAL
37
n
37
VAL
37
A
ALA
38
n
38
ALA
38
A
ASN
39
n
39
ASN
39
A
ARG
40
n
40
ARG
40
A
LEU
41
n
41
LEU
41
A
ALA
42
n
42
ALA
42
A
ARG
43
n
43
ARG
43
A
LEU
44
n
44
LEU
44
A
HIS
45
n
45
HIS
45
A
GLU
46
n
46
GLU
46
A
LEU
47
n
47
LEU
47
A
VAL
48
n
48
VAL
48
A
PRO
49
n
49
PRO
49
A
GLU
50
n
50
GLU
50
A
ASN
51
n
51
ASN
51
A
THR
52
n
52
THR
52
A
LYS
53
n
53
LYS
53
A
TYR
54
n
54
TYR
54
A
ILE
55
n
55
ILE
55
A
VAL
56
n
56
VAL
56
A
THR
57
n
57
THR
57
A
GLU
58
n
58
GLU
58
A
HIS
59
n
59
HIS
59
A
TYR
60
n
60
TYR
60
A
PRO
61
n
61
PRO
61
A
LYS
62
n
62
LYS
62
A
GLY
63
n
63
GLY
63
A
LEU
64
n
64
LEU
64
A
GLY
65
n
65
GLY
65
A
ARG
66
n
66
ARG
66
A
ILE
67
n
67
ILE
67
A
VAL
68
n
68
VAL
68
A
PRO
69
n
69
PRO
69
A
GLY
70
n
70
GLY
70
A
ILE
71
n
71
ILE
71
A
THR
72
n
72
THR
72
A
LEU
73
n
73
LEU
73
A
PRO
74
n
74
PRO
74
A
GLN
75
n
75
GLN
75
A
THR
76
n
76
THR
76
A
ALA
77
n
77
ALA
77
A
HIS
78
n
78
HIS
78
A
LEU
79
n
79
LEU
79
A
ILE
80
n
80
ILE
80
A
GLU
81
n
81
GLU
81
A
LYS
82
n
82
LYS
82
A
THR
83
n
83
THR
83
A
ARG
84
n
84
ARG
84
A
PHE
85
n
85
PHE
85
A
SER
86
n
86
SER
86
A
CYS
87
n
87
CYS
87
A
ILE
88
n
88
ILE
88
A
VAL
89
n
89
VAL
89
A
PRO
90
n
90
PRO
90
A
GLN
91
n
91
GLN
91
A
VAL
92
n
92
VAL
92
A
GLU
93
n
93
GLU
93
A
GLU
94
n
94
GLU
94
A
LEU
95
n
95
LEU
95
A
LEU
96
n
96
LEU
96
A
GLU
97
n
97
GLU
97
A
ASP
98
n
98
ASP
98
A
VAL
99
n
99
VAL
99
A
ASP
100
n
100
ASP
100
A
ASN
101
n
101
ASN
101
A
ALA
102
n
102
ALA
102
A
VAL
103
n
103
VAL
103
A
VAL
104
n
104
VAL
104
A
PHE
105
n
105
PHE
105
A
GLY
106
n
106
GLY
106
A
ILE
107
n
107
ILE
107
A
GLU
108
n
108
GLU
108
A
GLY
109
n
109
GLY
109
A
HIS
110
n
110
HIS
110
A
ALA
111
n
111
ALA
111
A
CYS
112
n
112
CYS
112
A
ILE
113
n
113
ILE
113
A
LEU
114
n
114
LEU
114
A
GLN
115
n
115
GLN
115
A
THR
116
n
116
THR
116
A
VAL
117
n
117
VAL
117
A
ALA
118
n
118
ALA
118
A
ASP
119
n
119
ASP
119
A
LEU
120
n
120
LEU
120
A
LEU
121
n
121
LEU
121
A
ASP
122
n
122
ASP
122
A
MET
123
n
123
MET
123
A
ASN
124
n
124
ASN
124
A
LYS
125
n
125
LYS
125
A
ARG
126
n
126
ARG
126
A
VAL
127
n
127
VAL
127
A
PHE
128
n
128
PHE
128
A
LEU
129
n
129
LEU
129
A
PRO
130
n
130
PRO
130
A
LYS
131
n
131
LYS
131
A
ASP
132
n
132
ASP
132
A
GLY
133
n
133
GLY
133
A
LEU
134
n
134
LEU
134
A
GLY
135
n
135
GLY
135
A
SER
136
n
136
SER
136
A
GLN
137
n
137
GLN
137
A
LYS
138
n
138
LYS
138
A
LYS
139
n
139
LYS
139
A
THR
140
n
140
THR
140
A
ASP
141
n
141
ASP
141
A
PHE
142
n
142
PHE
142
A
LYS
143
n
143
LYS
143
A
ALA
144
n
144
ALA
144
A
ALA
145
n
145
ALA
145
A
MET
146
n
146
MET
146
A
LYS
147
n
147
LYS
147
A
LEU
148
n
148
LEU
148
A
MET
149
n
149
MET
149
A
GLY
150
n
150
GLY
150
A
SER
151
n
151
SER
151
A
TRP
152
n
152
TRP
152
A
SER
153
n
153
SER
153
A
PRO
154
n
154
PRO
154
A
ASN
155
n
155
ASN
155
A
CYS
156
n
156
CYS
156
A
GLU
157
n
157
GLU
157
A
ILE
158
n
158
ILE
158
A
THR
159
n
159
THR
159
A
THR
160
n
160
THR
160
A
SER
161
n
161
SER
161
A
GLU
162
n
162
GLU
162
A
SER
163
n
163
SER
163
A
ILE
164
n
164
ILE
164
A
LEU
165
n
165
LEU
165
A
LEU
166
n
166
LEU
166
A
GLN
167
n
167
GLN
167
A
MET
168
n
168
MET
168
A
THR
169
n
169
THR
169
A
LYS
170
n
170
LYS
170
A
ASP
171
n
171
ASP
171
A
ALA
172
n
172
ALA
172
A
MET
173
n
173
MET
173
A
ASP
174
n
174
ASP
174
A
PRO
175
n
175
PRO
175
A
ASN
176
n
176
ASN
176
A
PHE
177
n
177
PHE
177
A
LYS
178
n
178
LYS
178
A
LYS
179
n
179
LYS
179
A
ILE
180
n
180
ILE
180
A
SER
181
n
181
SER
181
A
LYS
182
n
182
LYS
182
A
LEU
183
n
183
LEU
183
A
LEU
184
n
184
LEU
184
A
LYS
185
n
185
LYS
185
A
GLU
186
n
186
GLU
186
A
GLU
187
n
187
GLU
187
A
PRO
188
n
188
PRO
188
A
PRO
189
n
189
PRO
189
A
ILE
190
n
190
ILE
190
A
PRO
191
n
191
PRO
191
A
LEU
192
n
192
LEU
192
A
6.5473
-0.5820
0.9255
10.7128
1.3390
5.2698
-0.0553
0.0674
2.2659
-0.0284
-0.0390
0.6675
-0.0788
-0.1242
0.0943
0.6480
0.1291
-0.1044
0.5430
0.0850
0.7063
refined
95.3940
22.3060
30.0180
X-RAY DIFFRACTION
A
2
A
2
A
192
A
192
X-RAY DIFFRACTION
1
author_and_software_defined_assembly
PISA,PQS
4
tetrameric
8130
-37
31070
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_755
-x+2,-y,z
crystal symmetry operation
200.8620000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
3_645
-y+1,x-1,z
crystal symmetry operation
100.4310000000
-100.4310000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
4_665
y+1,-x+1,z
crystal symmetry operation
100.4310000000
100.4310000000
0.0000000000
A
O
HIS
78
A
O
HIS
78
A
N
TYR
54
A
N
TYR
54
A
O
LYS
53
A
O
LYS
53
A
N
PHE
15
A
N
PHE
15
A
N
LEU
16
A
N
LEU
16
A
O
VAL
103
A
O
VAL
103
A
N
ALA
102
A
N
ALA
102
A
O
PHE
128
A
O
PHE
128
A
N
LEU
129
A
N
LEU
129
A
O
GLU
157
A
O
GLU
157
1
A
MET
1
A
MET
1
1
Y
1
A
TYR
60
41.59
70.93
1
A
LEU
64
54.17
72.72
1
A
ARG
66
-171.39
128.49
1
A
CYS
87
-77.67
30.06
1
A
ILE
107
-173.27
137.49
1
A
ALA
111
-104.55
-94.63
1
A
THR
159
-120.83
-141.91
70.43
-1.37800
0.000
0.000
-1.37800
0.000
2.75600
0.868
0.898
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.312
0.313
3.80
40.86
101
2289
4.412
99.7
LIKELY RESIDUAL
1
MOLECULAR REPLACEMENT
0.998
PDB ENTRY 1X9G
MASK BULK SOLVENT
3.80
40.86
0
1504
0
0
1504
0.006
0.022
1534
0.893
1.989
2074
3.508
5.000
190
29.844
24.839
62
14.242
15.000
289
10.422
15.000
7
0.054
0.200
240
0.001
0.020
1122
0.177
0.200
691
0.295
0.200
1050
0.091
0.200
36
0.152
0.200
35
0.030
0.200
2
0.145
1.500
992
0.263
2.000
1560
0.023
3.000
602
0.036
4.500
514
0.304
0.464
3.90
6
167
20
98.30
3.800
50.000
1XN4
2294
0.126
1
3.700
99.9
3.80
3.94
1
3.50
99.6
data scaling
Zbyszek Otwinowski
zbyszek@mix.swmed.edu
http://www.lnls.br/infra/linhasluz/denzo-hkl.htm
SCALEPACK
package
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
(un)restrained refinement or idealisation of macromolecularstructures
REFMAC
refmac_5.2.0005 24/04/2001
phasing
EPMR
PUTATIVE MAR1 RIBONUCLEASE FROM LEISHMANIA MAJOR
1
N
N
A
GLN
21
A
GLN
21
HELX_P
A
SER
25
A
SER
25
5
1
5
A
ASN
30
A
ASN
30
HELX_P
A
VAL
48
A
VAL
48
1
2
19
A
VAL
89
A
VAL
89
HELX_P
A
GLU
94
A
GLU
94
1
3
6
A
LEU
95
A
LEU
95
HELX_P
A
GLU
97
A
GLU
97
5
4
3
A
ALA
111
A
ALA
111
HELX_P
A
MET
123
A
MET
123
1
5
13
A
ASP
132
A
ASP
132
HELX_P
A
LEU
134
A
LEU
134
5
6
3
A
LYS
138
A
LYS
138
HELX_P
A
GLY
150
A
GLY
150
1
7
13
A
THR
160
A
THR
160
HELX_P
A
THR
169
A
THR
169
1
8
10
A
ASN
176
A
ASN
176
HELX_P
A
LYS
185
A
LYS
185
1
9
10
STRUCTURAL GENOMICS, UNKNOWN FUNCTION
STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, SGPP, PSI, Structural Genomics of Pathogenic Protozoa Consortium, UNKNOWN FUNCTION
A
ILE
107
A
ILE
107
1
A
GLU
108
A
GLU
108
2.34
A
SER
153
A
SER
153
1
A
PRO
154
A
PRO
154
3.30
Q4QGT7_LEIMA
UNP
1
Q4QGT7
1
192
1XN4
1
192
Q4QGT7
A
1
1
192
6
parallel
parallel
parallel
parallel
parallel
A
ALA
77
A
ALA
77
A
LYS
82
A
LYS
82
A
THR
52
A
THR
52
A
HIS
59
A
HIS
59
A
THR
13
A
THR
13
A
VAL
18
A
VAL
18
A
ASN
101
A
ASN
101
A
GLY
106
A
GLY
106
A
ARG
126
A
ARG
126
A
PRO
130
A
PRO
130
A
CYS
156
A
CYS
156
A
THR
159
A
THR
159
79
I 4