0.007999 0.000000 0.007537 0.000000 0.013881 0.000000 0.000000 0.000000 0.013087 0.00000 0.00000 0.00000 Pedelacq, J.D. Waldo, G.S. Cabantous, S. Liong, E.C. Berendzen, J. Terwilliger, T.C. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 133.30 90.00 125.022 72.041 104.993 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C6 H14 O4 150.173 TRIETHYLENE GLYCOL non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C4 H12 N O3 1 122.143 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL TRIS BUFFER non-polymer C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Protein Sci. PRCIEI 0795 0961-8368 14 2562 2573 10.1110/ps.051664205 16195547 Structural and functional features of an NDP kinase from the hyperthermophile crenarchaeon Pyrobaculum aerophilum 2005 10.2210/pdb1xqi/pdb pdb_00001xqi 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 mirrors CCD 2000-10-04 ADSC QUANTUM 4 Si 111 double crystal MAD M x-ray 1 0.9792 1.0 0.9791 1.0 0.9500 1.0 X8C NSLS 0.9792, 0.9791, 0.9500 SYNCHROTRON NSLS BEAMLINE X8C 22029.693 Nucleoside diphosphate kinase 2.7.4.6 A10D, G33D, E40K, R71Q, S107N, I117N 3 man polymer 122.143 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 3 syn non-polymer 150.173 TRIETHYLENE GLYCOL 3 syn non-polymer 18.015 water 158 nat water NDK, NDP kinase, Nucleoside-2-P kinase no yes (MSE)HAINIAFFDLI(MSE)PVEKTLLILKPDAVARGLVDEIISRFKKAGLKIVALK(MSE)VKASPEEIERFYPSSEE WLQSAGQKLLKAYQELGIDPRAKIGTDDPVEVGRIIKRNLVKY(MSE)TSGPNVV(MSE)VLKGNRAVEIVRKLVGPTSP HSAPPGTIRGDYSIDSPDLAAEEGRVVFNLVHASDSPSEAEREIRFWFREEEVLE MHAINIAFFDLIMPVEKTLLILKPDAVARGLVDEIISRFKKAGLKIVALKMVKASPEEIERFYPSSEEWLQSAGQKLLKA YQELGIDPRAKIGTDDPVEVGRIIKRNLVKYMTSGPNVVMVLKGNRAVEIVRKLVGPTSPHSAPPGTIRGDYSIDSPDLA AEEGRVVFNLVHASDSPSEAEREIRFWFREEEVLE A,B,C polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Pyrobaculum STRAIN IM2 DSM 7523 ATCC 51768 Escherichia Escherichia coli sample ndk 13773 Pyrobaculum aerophilum 469008 Escherichia coli BL21(DE3) BL21(DE3) plasmid modified pET 28 C-6HIS 1 2.65 53.2 VAPOR DIFFUSION, HANGING DROP 8.5 PEG 4000, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K 298 database_2 struct_conn struct_ref_seq_dif struct_site repository Initial release Version format compliance Version format compliance Database references Derived calculations 1 0 2005-09-20 1 1 2008-04-30 1 2 2011-07-13 1 3 2021-10-20 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id The same protein from Dictyostelium discoideum N RCSB Y RCSB 2004-10-12 REL REL TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL PGE TRIETHYLENE GLYCOL HOH water TRS 200 2 TRS TRS 200 A PEG 500 3 PGE PGE 500 A TRS 300 2 TRS TRS 300 B PEG 600 3 PGE PGE 600 B TRS 400 2 TRS TRS 400 C PEG 700 3 PGE PGE 700 C HOH 6 4 HOH HOH 501 A HOH 7 4 HOH HOH 502 A HOH 10 4 HOH HOH 503 A HOH 17 4 HOH HOH 504 A HOH 27 4 HOH HOH 505 A HOH 28 4 HOH HOH 506 A HOH 30 4 HOH HOH 507 A HOH 34 4 HOH HOH 508 A HOH 35 4 HOH HOH 509 A HOH 37 4 HOH HOH 510 A HOH 38 4 HOH HOH 511 A HOH 39 4 HOH HOH 512 A HOH 40 4 HOH HOH 513 A HOH 44 4 HOH HOH 514 A HOH 46 4 HOH HOH 515 A HOH 48 4 HOH HOH 516 A HOH 49 4 HOH HOH 517 A HOH 50 4 HOH HOH 518 A HOH 53 4 HOH HOH 519 A HOH 55 4 HOH HOH 520 A HOH 56 4 HOH HOH 521 A HOH 64 4 HOH HOH 522 A HOH 66 4 HOH HOH 523 A HOH 67 4 HOH HOH 524 A HOH 69 4 HOH HOH 525 A HOH 70 4 HOH HOH 526 A HOH 71 4 HOH HOH 527 A HOH 72 4 HOH HOH 528 A HOH 77 4 HOH HOH 529 A HOH 83 4 HOH HOH 530 A HOH 93 4 HOH HOH 531 A HOH 99 4 HOH HOH 532 A HOH 108 4 HOH HOH 533 A HOH 109 4 HOH HOH 534 A HOH 114 4 HOH HOH 535 A HOH 121 4 HOH HOH 536 A HOH 122 4 HOH HOH 537 A HOH 126 4 HOH HOH 538 A HOH 131 4 HOH HOH 539 A HOH 134 4 HOH HOH 540 A HOH 135 4 HOH HOH 541 A HOH 138 4 HOH HOH 542 A HOH 144 4 HOH HOH 543 A HOH 147 4 HOH HOH 544 A HOH 149 4 HOH HOH 545 A HOH 157 4 HOH HOH 546 A HOH 3 4 HOH HOH 601 B HOH 4 4 HOH HOH 602 B HOH 12 4 HOH HOH 603 B HOH 13 4 HOH HOH 604 B HOH 14 4 HOH HOH 605 B HOH 15 4 HOH HOH 606 B HOH 21 4 HOH HOH 607 B HOH 22 4 HOH HOH 608 B HOH 23 4 HOH HOH 609 B HOH 24 4 HOH HOH 610 B HOH 26 4 HOH HOH 611 B HOH 31 4 HOH HOH 612 B HOH 36 4 HOH HOH 613 B HOH 42 4 HOH HOH 614 B HOH 45 4 HOH HOH 615 B HOH 47 4 HOH HOH 616 B HOH 51 4 HOH HOH 617 B HOH 52 4 HOH HOH 618 B HOH 58 4 HOH HOH 619 B HOH 62 4 HOH HOH 620 B HOH 73 4 HOH HOH 621 B HOH 74 4 HOH HOH 622 B HOH 75 4 HOH HOH 623 B HOH 76 4 HOH HOH 624 B HOH 79 4 HOH HOH 625 B HOH 84 4 HOH HOH 626 B HOH 86 4 HOH HOH 627 B HOH 87 4 HOH HOH 628 B HOH 88 4 HOH HOH 629 B HOH 89 4 HOH HOH 630 B HOH 95 4 HOH HOH 631 B HOH 98 4 HOH HOH 632 B HOH 100 4 HOH HOH 633 B HOH 101 4 HOH HOH 634 B HOH 102 4 HOH HOH 635 B HOH 103 4 HOH HOH 636 B HOH 106 4 HOH HOH 637 B HOH 107 4 HOH HOH 638 B HOH 110 4 HOH HOH 639 B HOH 112 4 HOH HOH 640 B HOH 113 4 HOH HOH 641 B HOH 115 4 HOH HOH 642 B HOH 118 4 HOH HOH 643 B HOH 120 4 HOH HOH 644 B HOH 123 4 HOH HOH 645 B HOH 124 4 HOH HOH 646 B HOH 125 4 HOH HOH 647 B HOH 129 4 HOH HOH 648 B HOH 132 4 HOH HOH 649 B HOH 133 4 HOH HOH 650 B HOH 139 4 HOH HOH 651 B HOH 143 4 HOH HOH 652 B HOH 148 4 HOH HOH 653 B HOH 152 4 HOH HOH 654 B HOH 153 4 HOH HOH 655 B HOH 154 4 HOH HOH 656 B HOH 155 4 HOH HOH 657 B HOH 1 4 HOH HOH 701 C HOH 2 4 HOH HOH 702 C HOH 5 4 HOH HOH 703 C HOH 8 4 HOH HOH 704 C HOH 9 4 HOH HOH 705 C HOH 11 4 HOH HOH 706 C HOH 16 4 HOH HOH 707 C HOH 18 4 HOH HOH 708 C HOH 19 4 HOH HOH 709 C HOH 20 4 HOH HOH 710 C HOH 25 4 HOH HOH 711 C HOH 29 4 HOH HOH 712 C HOH 32 4 HOH HOH 713 C HOH 33 4 HOH HOH 714 C HOH 41 4 HOH HOH 715 C HOH 43 4 HOH HOH 716 C HOH 54 4 HOH HOH 717 C HOH 57 4 HOH HOH 718 C HOH 59 4 HOH HOH 719 C HOH 50 4 HOH HOH 720 C HOH 61 4 HOH HOH 721 C HOH 63 4 HOH HOH 722 C HOH 65 4 HOH HOH 723 C HOH 68 4 HOH HOH 724 C HOH 78 4 HOH HOH 725 C HOH 80 4 HOH HOH 726 C HOH 81 4 HOH HOH 727 C HOH 82 4 HOH HOH 728 C HOH 85 4 HOH HOH 729 C HOH 90 4 HOH HOH 730 C HOH 91 4 HOH HOH 731 C HOH 92 4 HOH HOH 732 C HOH 94 4 HOH HOH 733 C HOH 96 4 HOH HOH 734 C HOH 97 4 HOH HOH 735 C HOH 104 4 HOH HOH 736 C HOH 105 4 HOH HOH 737 C HOH 111 4 HOH HOH 738 C HOH 116 4 HOH HOH 739 C HOH 117 4 HOH HOH 740 C HOH 119 4 HOH HOH 741 C HOH 127 4 HOH HOH 742 C HOH 128 4 HOH HOH 743 C HOH 130 4 HOH HOH 744 C HOH 136 4 HOH HOH 745 C HOH 137 4 HOH HOH 746 C HOH 140 4 HOH HOH 747 C HOH 141 4 HOH HOH 748 C HOH 142 4 HOH HOH 749 C HOH 145 4 HOH HOH 750 C HOH 146 4 HOH HOH 751 C HOH 150 4 HOH HOH 752 C HOH 151 4 HOH HOH 753 C HOH 156 4 HOH HOH 754 C HOH 158 4 HOH HOH 755 C n 1 1 A n 2 2 A n 3 3 A n 4 4 A n 5 5 A n 6 6 A n 7 7 A n 8 8 A n 9 9 A n 10 10 A n 11 11 A n 12 12 A n 13 13 A PRO 14 n 14 PRO 14 A VAL 15 n 15 VAL 15 A GLU 16 n 16 GLU 16 A LYS 17 n 17 LYS 17 A THR 18 n 18 THR 18 A LEU 19 n 19 LEU 19 A LEU 20 n 20 LEU 20 A ILE 21 n 21 ILE 21 A LEU 22 n 22 LEU 22 A LYS 23 n 23 LYS 23 A PRO 24 n 24 PRO 24 A ASP 25 n 25 ASP 25 A ALA 26 n 26 ALA 26 A VAL 27 n 27 VAL 27 A ALA 28 n 28 ALA 28 A ARG 29 n 29 ARG 29 A GLY 30 n 30 GLY 30 A LEU 31 n 31 LEU 31 A VAL 32 n 32 VAL 32 A ASP 33 n 33 ASP 33 A GLU 34 n 34 GLU 34 A ILE 35 n 35 ILE 35 A ILE 36 n 36 ILE 36 A SER 37 n 37 SER 37 A ARG 38 n 38 ARG 38 A PHE 39 n 39 PHE 39 A LYS 40 n 40 LYS 40 A LYS 41 n 41 LYS 41 A ALA 42 n 42 ALA 42 A GLY 43 n 43 GLY 43 A LEU 44 n 44 LEU 44 A ALA 45 n 45 LYS 45 A ILE 46 n 46 ILE 46 A VAL 47 n 47 VAL 47 A ALA 48 n 48 ALA 48 A LEU 49 n 49 LEU 49 A LYS 50 n 50 LYS 50 A MSE 51 n 51 MSE 51 A VAL 52 n 52 VAL 52 A LYS 53 n 53 LYS 53 A ALA 54 n 54 ALA 54 A SER 55 n 55 SER 55 A PRO 56 n 56 PRO 56 A GLU 57 n 57 GLU 57 A GLU 58 n 58 GLU 58 A ILE 59 n 59 ILE 59 A GLU 60 n 60 GLU 60 A ARG 61 n 61 ARG 61 A PHE 62 n 62 PHE 62 A TYR 63 n 63 TYR 63 A PRO 64 n 64 PRO 64 A SER 65 n 65 SER 65 A SER 66 n 66 SER 66 A GLU 67 n 67 GLU 67 A GLU 68 n 68 GLU 68 A TRP 69 n 69 TRP 69 A LEU 70 n 70 LEU 70 A GLN 71 n 71 GLN 71 A SER 72 n 72 SER 72 A ALA 73 n 73 ALA 73 A GLY 74 n 74 GLY 74 A GLN 75 n 75 GLN 75 A LYS 76 n 76 LYS 76 A LEU 77 n 77 LEU 77 A LEU 78 n 78 LEU 78 A ALA 79 n 79 LYS 79 A ALA 80 n 80 ALA 80 A TYR 81 n 81 TYR 81 A GLN 82 n 82 GLN 82 A GLU 83 n 83 GLU 83 A LEU 84 n 84 LEU 84 A GLY 85 n 85 GLY 85 A ILE 86 n 86 ILE 86 A ASP 87 n 87 ASP 87 A PRO 88 n 88 PRO 88 A ARG 89 n 89 ARG 89 A ALA 90 n 90 ALA 90 A LYS 91 n 91 LYS 91 A ILE 92 n 92 ILE 92 A GLY 93 n 93 GLY 93 A THR 94 n 94 THR 94 A ASP 95 n 95 ASP 95 A ASP 96 n 96 ASP 96 A PRO 97 n 97 PRO 97 A VAL 98 n 98 VAL 98 A GLU 99 n 99 GLU 99 A VAL 100 n 100 VAL 100 A GLY 101 n 101 GLY 101 A ARG 102 n 102 ARG 102 A ILE 103 n 103 ILE 103 A ILE 104 n 104 ILE 104 A LYS 105 n 105 LYS 105 A ARG 106 n 106 ARG 106 A ASN 107 n 107 ASN 107 A LEU 108 n 108 LEU 108 A VAL 109 n 109 VAL 109 A LYS 110 n 110 LYS 110 A TYR 111 n 111 TYR 111 A MSE 112 n 112 MSE 112 A THR 113 n 113 THR 113 A SER 114 n 114 SER 114 A GLY 115 n 115 GLY 115 A PRO 116 n 116 PRO 116 A ASN 117 n 117 ASN 117 A VAL 118 n 118 VAL 118 A VAL 119 n 119 VAL 119 A MSE 120 n 120 MSE 120 A VAL 121 n 121 VAL 121 A LEU 122 n 122 LEU 122 A LYS 123 n 123 LYS 123 A GLY 124 n 124 GLY 124 A ASN 125 n 125 ASN 125 A ARG 126 n 126 ARG 126 A ALA 127 n 127 ALA 127 A VAL 128 n 128 VAL 128 A GLU 129 n 129 GLU 129 A ILE 130 n 130 ILE 130 A VAL 131 n 131 VAL 131 A ARG 132 n 132 ARG 132 A LYS 133 n 133 LYS 133 A LEU 134 n 134 LEU 134 A VAL 135 n 135 VAL 135 A GLY 136 n 136 GLY 136 A PRO 137 n 137 PRO 137 A THR 138 n 138 THR 138 A SER 139 n 139 SER 139 A PRO 140 n 140 PRO 140 A HIS 141 n 141 HIS 141 A SER 142 n 142 SER 142 A ALA 143 n 143 ALA 143 A PRO 144 n 144 PRO 144 A PRO 145 n 145 PRO 145 A GLY 146 n 146 GLY 146 A THR 147 n 147 THR 147 A ILE 148 n 148 ILE 148 A ARG 149 n 149 ARG 149 A GLY 150 n 150 GLY 150 A ASP 151 n 151 ASP 151 A TYR 152 n 152 TYR 152 A SER 153 n 153 SER 153 A ILE 154 n 154 ILE 154 A ASP 155 n 155 ASP 155 A SER 156 n 156 SER 156 A PRO 157 n 157 PRO 157 A ASP 158 n 158 ASP 158 A LEU 159 n 159 LEU 159 A ALA 160 n 160 ALA 160 A ALA 161 n 161 ALA 161 A GLU 162 n 162 GLU 162 A GLU 163 n 163 GLU 163 A GLY 164 n 164 GLY 164 A ARG 165 n 165 ARG 165 A VAL 166 n 166 VAL 166 A VAL 167 n 167 VAL 167 A PHE 168 n 168 PHE 168 A ASN 169 n 169 ASN 169 A LEU 170 n 170 LEU 170 A VAL 171 n 171 VAL 171 A HIS 172 n 172 HIS 172 A ALA 173 n 173 ALA 173 A SER 174 n 174 SER 174 A ASP 175 n 175 ASP 175 A SER 176 n 176 SER 176 A PRO 177 n 177 PRO 177 A SER 178 n 178 SER 178 A GLU 179 n 179 GLU 179 A ALA 180 n 180 ALA 180 A ALA 181 n 181 GLU 181 A ARG 182 n 182 ARG 182 A GLU 183 n 183 GLU 183 A ILE 184 n 184 ILE 184 A ARG 185 n 185 ARG 185 A PHE 186 n 186 PHE 186 A TRP 187 n 187 TRP 187 A PHE 188 n 188 PHE 188 A ARG 189 n 189 ARG 189 A GLU 190 n 190 GLU 190 A GLU 191 n 191 GLU 191 A GLU 192 n 192 GLU 192 A VAL 193 n 193 VAL 193 A LEU 194 n 194 LEU 194 A GLU 195 n 195 GLU 195 A n 1 1 B n 2 2 B n 3 3 B n 4 4 B n 5 5 B n 6 6 B n 7 7 B n 8 8 B n 9 9 B n 10 10 B n 11 11 B n 12 12 B n 13 13 B PRO 14 n 14 PRO 14 B VAL 15 n 15 VAL 15 B GLU 16 n 16 GLU 16 B LYS 17 n 17 LYS 17 B THR 18 n 18 THR 18 B LEU 19 n 19 LEU 19 B LEU 20 n 20 LEU 20 B ILE 21 n 21 ILE 21 B LEU 22 n 22 LEU 22 B LYS 23 n 23 LYS 23 B PRO 24 n 24 PRO 24 B ASP 25 n 25 ASP 25 B ALA 26 n 26 ALA 26 B VAL 27 n 27 VAL 27 B ALA 28 n 28 ALA 28 B ARG 29 n 29 ARG 29 B GLY 30 n 30 GLY 30 B LEU 31 n 31 LEU 31 B VAL 32 n 32 VAL 32 B ASP 33 n 33 ASP 33 B GLU 34 n 34 GLU 34 B ILE 35 n 35 ILE 35 B ILE 36 n 36 ILE 36 B SER 37 n 37 SER 37 B ARG 38 n 38 ARG 38 B PHE 39 n 39 PHE 39 B LYS 40 n 40 LYS 40 B LYS 41 n 41 LYS 41 B ALA 42 n 42 ALA 42 B GLY 43 n 43 GLY 43 B LEU 44 n 44 LEU 44 B ALA 45 n 45 LYS 45 B ILE 46 n 46 ILE 46 B VAL 47 n 47 VAL 47 B ALA 48 n 48 ALA 48 B LEU 49 n 49 LEU 49 B LYS 50 n 50 LYS 50 B MSE 51 n 51 MSE 51 B VAL 52 n 52 VAL 52 B LYS 53 n 53 LYS 53 B ALA 54 n 54 ALA 54 B SER 55 n 55 SER 55 B PRO 56 n 56 PRO 56 B GLU 57 n 57 GLU 57 B GLU 58 n 58 GLU 58 B ILE 59 n 59 ILE 59 B GLU 60 n 60 GLU 60 B ARG 61 n 61 ARG 61 B PHE 62 n 62 PHE 62 B TYR 63 n 63 TYR 63 B PRO 64 n 64 PRO 64 B SER 65 n 65 SER 65 B SER 66 n 66 SER 66 B GLU 67 n 67 GLU 67 B GLU 68 n 68 GLU 68 B TRP 69 n 69 TRP 69 B LEU 70 n 70 LEU 70 B GLN 71 n 71 GLN 71 B SER 72 n 72 SER 72 B ALA 73 n 73 ALA 73 B GLY 74 n 74 GLY 74 B GLN 75 n 75 GLN 75 B LYS 76 n 76 LYS 76 B LEU 77 n 77 LEU 77 B LEU 78 n 78 LEU 78 B ALA 79 n 79 LYS 79 B ALA 80 n 80 ALA 80 B TYR 81 n 81 TYR 81 B GLN 82 n 82 GLN 82 B GLU 83 n 83 GLU 83 B LEU 84 n 84 LEU 84 B GLY 85 n 85 GLY 85 B ILE 86 n 86 ILE 86 B ASP 87 n 87 ASP 87 B PRO 88 n 88 PRO 88 B ARG 89 n 89 ARG 89 B ALA 90 n 90 ALA 90 B LYS 91 n 91 LYS 91 B ILE 92 n 92 ILE 92 B GLY 93 n 93 GLY 93 B THR 94 n 94 THR 94 B ASP 95 n 95 ASP 95 B ASP 96 n 96 ASP 96 B PRO 97 n 97 PRO 97 B VAL 98 n 98 VAL 98 B GLU 99 n 99 GLU 99 B VAL 100 n 100 VAL 100 B GLY 101 n 101 GLY 101 B ARG 102 n 102 ARG 102 B ILE 103 n 103 ILE 103 B ILE 104 n 104 ILE 104 B LYS 105 n 105 LYS 105 B ARG 106 n 106 ARG 106 B ASN 107 n 107 ASN 107 B LEU 108 n 108 LEU 108 B VAL 109 n 109 VAL 109 B LYS 110 n 110 LYS 110 B TYR 111 n 111 TYR 111 B MSE 112 n 112 MSE 112 B THR 113 n 113 THR 113 B SER 114 n 114 SER 114 B GLY 115 n 115 GLY 115 B PRO 116 n 116 PRO 116 B ASN 117 n 117 ASN 117 B VAL 118 n 118 VAL 118 B VAL 119 n 119 VAL 119 B MSE 120 n 120 MSE 120 B VAL 121 n 121 VAL 121 B LEU 122 n 122 LEU 122 B LYS 123 n 123 LYS 123 B GLY 124 n 124 GLY 124 B ASN 125 n 125 ASN 125 B ARG 126 n 126 ARG 126 B ALA 127 n 127 ALA 127 B VAL 128 n 128 VAL 128 B GLU 129 n 129 GLU 129 B ILE 130 n 130 ILE 130 B VAL 131 n 131 VAL 131 B ARG 132 n 132 ARG 132 B LYS 133 n 133 LYS 133 B LEU 134 n 134 LEU 134 B VAL 135 n 135 VAL 135 B GLY 136 n 136 GLY 136 B PRO 137 n 137 PRO 137 B THR 138 n 138 THR 138 B SER 139 n 139 SER 139 B PRO 140 n 140 PRO 140 B HIS 141 n 141 HIS 141 B SER 142 n 142 SER 142 B ALA 143 n 143 ALA 143 B PRO 144 n 144 PRO 144 B PRO 145 n 145 PRO 145 B GLY 146 n 146 GLY 146 B THR 147 n 147 THR 147 B ILE 148 n 148 ILE 148 B ARG 149 n 149 ARG 149 B GLY 150 n 150 GLY 150 B ASP 151 n 151 ASP 151 B TYR 152 n 152 TYR 152 B SER 153 n 153 SER 153 B ILE 154 n 154 ILE 154 B ASP 155 n 155 ASP 155 B SER 156 n 156 SER 156 B PRO 157 n 157 PRO 157 B ASP 158 n 158 ASP 158 B LEU 159 n 159 LEU 159 B ALA 160 n 160 ALA 160 B ALA 161 n 161 ALA 161 B GLU 162 n 162 GLU 162 B GLU 163 n 163 GLU 163 B GLY 164 n 164 GLY 164 B ARG 165 n 165 ARG 165 B VAL 166 n 166 VAL 166 B VAL 167 n 167 VAL 167 B PHE 168 n 168 PHE 168 B ASN 169 n 169 ASN 169 B LEU 170 n 170 LEU 170 B VAL 171 n 171 VAL 171 B HIS 172 n 172 HIS 172 B ALA 173 n 173 ALA 173 B SER 174 n 174 SER 174 B ASP 175 n 175 ASP 175 B SER 176 n 176 SER 176 B PRO 177 n 177 PRO 177 B SER 178 n 178 SER 178 B GLU 179 n 179 GLU 179 B ALA 180 n 180 ALA 180 B ALA 181 n 181 GLU 181 B ARG 182 n 182 ARG 182 B GLU 183 n 183 GLU 183 B ILE 184 n 184 ILE 184 B ARG 185 n 185 ARG 185 B PHE 186 n 186 PHE 186 B TRP 187 n 187 TRP 187 B PHE 188 n 188 PHE 188 B ARG 189 n 189 ARG 189 B GLU 190 n 190 GLU 190 B GLU 191 n 191 GLU 191 B GLU 192 n 192 GLU 192 B VAL 193 n 193 VAL 193 B LEU 194 n 194 LEU 194 B GLU 195 n 195 GLU 195 B n 1 1 C n 2 2 C n 3 3 C n 4 4 C n 5 5 C n 6 6 C n 7 7 C n 8 8 C n 9 9 C n 10 10 C n 11 11 C n 12 12 C n 13 13 C PRO 14 n 14 PRO 14 C VAL 15 n 15 VAL 15 C GLU 16 n 16 GLU 16 C LYS 17 n 17 LYS 17 C THR 18 n 18 THR 18 C LEU 19 n 19 LEU 19 C LEU 20 n 20 LEU 20 C ILE 21 n 21 ILE 21 C LEU 22 n 22 LEU 22 C LYS 23 n 23 LYS 23 C PRO 24 n 24 PRO 24 C ASP 25 n 25 ASP 25 C ALA 26 n 26 ALA 26 C VAL 27 n 27 VAL 27 C ALA 28 n 28 ALA 28 C ARG 29 n 29 ARG 29 C GLY 30 n 30 GLY 30 C LEU 31 n 31 LEU 31 C VAL 32 n 32 VAL 32 C ASP 33 n 33 ASP 33 C GLU 34 n 34 GLU 34 C ILE 35 n 35 ILE 35 C ILE 36 n 36 ILE 36 C SER 37 n 37 SER 37 C ARG 38 n 38 ARG 38 C PHE 39 n 39 PHE 39 C LYS 40 n 40 LYS 40 C LYS 41 n 41 LYS 41 C ALA 42 n 42 ALA 42 C GLY 43 n 43 GLY 43 C LEU 44 n 44 LEU 44 C ALA 45 n 45 LYS 45 C ILE 46 n 46 ILE 46 C VAL 47 n 47 VAL 47 C ALA 48 n 48 ALA 48 C LEU 49 n 49 LEU 49 C LYS 50 n 50 LYS 50 C MSE 51 n 51 MSE 51 C VAL 52 n 52 VAL 52 C LYS 53 n 53 LYS 53 C ALA 54 n 54 ALA 54 C SER 55 n 55 SER 55 C PRO 56 n 56 PRO 56 C GLU 57 n 57 GLU 57 C GLU 58 n 58 GLU 58 C ILE 59 n 59 ILE 59 C GLU 60 n 60 GLU 60 C ARG 61 n 61 ARG 61 C PHE 62 n 62 PHE 62 C TYR 63 n 63 TYR 63 C PRO 64 n 64 PRO 64 C SER 65 n 65 SER 65 C SER 66 n 66 SER 66 C GLU 67 n 67 GLU 67 C GLU 68 n 68 GLU 68 C TRP 69 n 69 TRP 69 C LEU 70 n 70 LEU 70 C GLN 71 n 71 GLN 71 C SER 72 n 72 SER 72 C ALA 73 n 73 ALA 73 C GLY 74 n 74 GLY 74 C GLN 75 n 75 GLN 75 C LYS 76 n 76 LYS 76 C LEU 77 n 77 LEU 77 C LEU 78 n 78 LEU 78 C ALA 79 n 79 LYS 79 C ALA 80 n 80 ALA 80 C TYR 81 n 81 TYR 81 C GLN 82 n 82 GLN 82 C GLU 83 n 83 GLU 83 C LEU 84 n 84 LEU 84 C GLY 85 n 85 GLY 85 C ILE 86 n 86 ILE 86 C ASP 87 n 87 ASP 87 C PRO 88 n 88 PRO 88 C ARG 89 n 89 ARG 89 C ALA 90 n 90 ALA 90 C LYS 91 n 91 LYS 91 C ILE 92 n 92 ILE 92 C GLY 93 n 93 GLY 93 C THR 94 n 94 THR 94 C ASP 95 n 95 ASP 95 C ASP 96 n 96 ASP 96 C PRO 97 n 97 PRO 97 C VAL 98 n 98 VAL 98 C GLU 99 n 99 GLU 99 C VAL 100 n 100 VAL 100 C GLY 101 n 101 GLY 101 C ARG 102 n 102 ARG 102 C ILE 103 n 103 ILE 103 C ILE 104 n 104 ILE 104 C LYS 105 n 105 LYS 105 C ARG 106 n 106 ARG 106 C ASN 107 n 107 ASN 107 C LEU 108 n 108 LEU 108 C VAL 109 n 109 VAL 109 C LYS 110 n 110 LYS 110 C TYR 111 n 111 TYR 111 C MSE 112 n 112 MSE 112 C THR 113 n 113 THR 113 C SER 114 n 114 SER 114 C GLY 115 n 115 GLY 115 C PRO 116 n 116 PRO 116 C ASN 117 n 117 ASN 117 C VAL 118 n 118 VAL 118 C VAL 119 n 119 VAL 119 C MSE 120 n 120 MSE 120 C VAL 121 n 121 VAL 121 C LEU 122 n 122 LEU 122 C LYS 123 n 123 LYS 123 C GLY 124 n 124 GLY 124 C ASN 125 n 125 ASN 125 C ARG 126 n 126 ARG 126 C ALA 127 n 127 ALA 127 C VAL 128 n 128 VAL 128 C GLU 129 n 129 GLU 129 C ILE 130 n 130 ILE 130 C VAL 131 n 131 VAL 131 C ARG 132 n 132 ARG 132 C LYS 133 n 133 LYS 133 C LEU 134 n 134 LEU 134 C VAL 135 n 135 VAL 135 C GLY 136 n 136 GLY 136 C PRO 137 n 137 PRO 137 C THR 138 n 138 THR 138 C SER 139 n 139 SER 139 C PRO 140 n 140 PRO 140 C HIS 141 n 141 HIS 141 C SER 142 n 142 SER 142 C ALA 143 n 143 ALA 143 C PRO 144 n 144 PRO 144 C PRO 145 n 145 PRO 145 C GLY 146 n 146 GLY 146 C THR 147 n 147 THR 147 C ILE 148 n 148 ILE 148 C ARG 149 n 149 ARG 149 C GLY 150 n 150 GLY 150 C ASP 151 n 151 ASP 151 C TYR 152 n 152 TYR 152 C SER 153 n 153 SER 153 C ILE 154 n 154 ILE 154 C ASP 155 n 155 ASP 155 C SER 156 n 156 SER 156 C PRO 157 n 157 PRO 157 C ASP 158 n 158 ASP 158 C LEU 159 n 159 LEU 159 C ALA 160 n 160 ALA 160 C ALA 161 n 161 ALA 161 C GLU 162 n 162 GLU 162 C GLU 163 n 163 GLU 163 C GLY 164 n 164 GLY 164 C ARG 165 n 165 ARG 165 C VAL 166 n 166 VAL 166 C VAL 167 n 167 VAL 167 C PHE 168 n 168 PHE 168 C ASN 169 n 169 ASN 169 C LEU 170 n 170 LEU 170 C VAL 171 n 171 VAL 171 C HIS 172 n 172 HIS 172 C ALA 173 n 173 ALA 173 C SER 174 n 174 SER 174 C ASP 175 n 175 ASP 175 C SER 176 n 176 SER 176 C PRO 177 n 177 PRO 177 C SER 178 n 178 SER 178 C GLU 179 n 179 GLU 179 C ALA 180 n 180 ALA 180 C ALA 181 n 181 GLU 181 C ARG 182 n 182 ARG 182 C GLU 183 n 183 GLU 183 C ILE 184 n 184 ILE 184 C ARG 185 n 185 ARG 185 C PHE 186 n 186 PHE 186 C TRP 187 n 187 TRP 187 C PHE 188 n 188 PHE 188 C ARG 189 n 189 ARG 189 C GLU 190 n 190 GLU 190 C GLU 191 n 191 GLU 191 C GLU 192 n 192 GLU 192 C VAL 193 n 193 VAL 193 C LEU 194 n 194 LEU 194 C GLU 195 n 195 GLU 195 C author_and_software_defined_assembly PISA 2 dimeric author_defined_assembly 2 dimeric software_defined_assembly PISA 6 hexameric 2960 13 17440 15860 26 45180 A MSE 51 SELENOMETHIONINE A MSE 51 MET A MSE 112 SELENOMETHIONINE A MSE 112 MET A MSE 120 SELENOMETHIONINE A MSE 120 MET B MSE 51 SELENOMETHIONINE B MSE 51 MET B MSE 112 SELENOMETHIONINE B MSE 112 MET B MSE 120 SELENOMETHIONINE B MSE 120 MET C MSE 51 SELENOMETHIONINE C MSE 51 MET C MSE 112 SELENOMETHIONINE C MSE 112 MET C MSE 120 SELENOMETHIONINE C MSE 120 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 2_656 -x+1,y,-z+1 crystal symmetry operation 53.0158736711 0.0000000000 76.4110451447 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 2_556 -x,y,-z+1 crystal symmetry operation -72.0061263289 0.0000000000 76.4110451447 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 3_445 x-1/2,y-1/2,z crystal symmetry operation -62.5110000000 -36.0205000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 4_546 -x+1/2,y-1/2,-z+1 crystal symmetry operation -9.4951263289 -36.0205000000 76.4110451447 A N VAL 52 A N VAL 52 A O ASN 117 A O ASN 117 A O VAL 118 A O VAL 118 A N LEU 22 A N LEU 22 A N ILE 21 A N ILE 21 A O HIS 172 A O HIS 172 B N VAL 52 B N VAL 52 B O ASN 117 B O ASN 117 B O VAL 118 B O VAL 118 B N LEU 22 B N LEU 22 B N ILE 21 B N ILE 21 B O HIS 172 B O HIS 172 C N VAL 52 C N VAL 52 C O ASN 117 C O ASN 117 C O VAL 118 C O VAL 118 C N LEU 22 C N LEU 22 C N ILE 21 C N ILE 21 C O HIS 172 C O HIS 172 1 A CG LYS 45 A CG LYS 45 1 Y 1 A CD LYS 45 A CD LYS 45 1 Y 1 A CE LYS 45 A CE LYS 45 1 Y 1 A NZ LYS 45 A NZ LYS 45 1 Y 1 A CG LYS 79 A CG LYS 79 1 Y 1 A CD LYS 79 A CD LYS 79 1 Y 1 A CE LYS 79 A CE LYS 79 1 Y 1 A NZ LYS 79 A NZ LYS 79 1 Y 1 A CG GLU 181 A CG GLU 181 1 Y 1 A CD GLU 181 A CD GLU 181 1 Y 1 A OE1 GLU 181 A OE1 GLU 181 1 Y 1 A OE2 GLU 181 A OE2 GLU 181 1 Y 1 B CG LYS 45 B CG LYS 45 1 Y 1 B CD LYS 45 B CD LYS 45 1 Y 1 B CE LYS 45 B CE LYS 45 1 Y 1 B NZ LYS 45 B NZ LYS 45 1 Y 1 B CG LYS 79 B CG LYS 79 1 Y 1 B CD LYS 79 B CD LYS 79 1 Y 1 B CE LYS 79 B CE LYS 79 1 Y 1 B NZ LYS 79 B NZ LYS 79 1 Y 1 B CG GLU 181 B CG GLU 181 1 Y 1 B CD GLU 181 B CD GLU 181 1 Y 1 B OE1 GLU 181 B OE1 GLU 181 1 Y 1 B OE2 GLU 181 B OE2 GLU 181 1 Y 1 C CG LYS 45 C CG LYS 45 1 Y 1 C CD LYS 45 C CD LYS 45 1 Y 1 C CE LYS 45 C CE LYS 45 1 Y 1 C NZ LYS 45 C NZ LYS 45 1 Y 1 C CG LYS 79 C CG LYS 79 1 Y 1 C CD LYS 79 C CD LYS 79 1 Y 1 C CE LYS 79 C CE LYS 79 1 Y 1 C NZ LYS 79 C NZ LYS 79 1 Y 1 C CG GLU 181 C CG GLU 181 1 Y 1 C CD GLU 181 C CD GLU 181 1 Y 1 C OE1 GLU 181 C OE1 GLU 181 1 Y 1 C OE2 GLU 181 C OE2 GLU 181 1 Y 1 A MSE 1 A MSE 1 1 Y 1 A HIS 2 A HIS 2 1 Y 1 A ALA 3 A ALA 3 1 Y 1 A ILE 4 A ILE 4 1 Y 1 A ASN 5 A ASN 5 1 Y 1 A ILE 6 A ILE 6 1 Y 1 A ALA 7 A ALA 7 1 Y 1 A PHE 8 A PHE 8 1 Y 1 A PHE 9 A PHE 9 1 Y 1 A ASP 10 A ASP 10 1 Y 1 A LEU 11 A LEU 11 1 Y 1 A ILE 12 A ILE 12 1 Y 1 A MSE 13 A MSE 13 1 Y 1 B MSE 1 B MSE 1 1 Y 1 B HIS 2 B HIS 2 1 Y 1 B ALA 3 B ALA 3 1 Y 1 B ILE 4 B ILE 4 1 Y 1 B ASN 5 B ASN 5 1 Y 1 B ILE 6 B ILE 6 1 Y 1 B ALA 7 B ALA 7 1 Y 1 B PHE 8 B PHE 8 1 Y 1 B PHE 9 B PHE 9 1 Y 1 B ASP 10 B ASP 10 1 Y 1 B LEU 11 B LEU 11 1 Y 1 B ILE 12 B ILE 12 1 Y 1 B MSE 13 B MSE 13 1 Y 1 C MSE 1 C MSE 1 1 Y 1 C HIS 2 C HIS 2 1 Y 1 C ALA 3 C ALA 3 1 Y 1 C ILE 4 C ILE 4 1 Y 1 C ASN 5 C ASN 5 1 Y 1 C ILE 6 C ILE 6 1 Y 1 C ALA 7 C ALA 7 1 Y 1 C PHE 8 C PHE 8 1 Y 1 C PHE 9 C PHE 9 1 Y 1 C ASP 10 C ASP 10 1 Y 1 C LEU 11 C LEU 11 1 Y 1 C ILE 12 C ILE 12 1 Y 1 C MSE 13 C MSE 13 1 Y 1 A A OD2 OH ASP TYR 25 111 2.16 1 5.92 0.90 118.30 124.22 A A A CB CG OD1 ASP ASP ASP 25 25 25 N 1 -3.85 0.50 120.30 116.45 A A A NE CZ NH2 ARG ARG ARG 38 38 38 N 1 3.75 0.50 120.30 124.05 A A A NE CZ NH1 ARG ARG ARG 149 149 149 N 1 -3.56 0.50 120.30 116.74 A A A NE CZ NH2 ARG ARG ARG 149 149 149 N 1 -10.36 1.70 111.00 100.64 B B B CB CG CD2 LEU LEU LEU 22 22 22 N 1 3.45 0.50 120.30 123.75 B B B NE CZ NH2 ARG ARG ARG 89 89 89 N 1 -15.74 2.20 98.90 83.16 C C C CG SE CE MSE MSE MSE 51 51 51 N 1 3.10 0.50 120.30 123.40 C C C NE CZ NH1 ARG ARG ARG 149 149 149 N 1 -4.19 0.50 120.30 116.11 C C C NE CZ NH2 ARG ARG ARG 149 149 149 N 1 3.75 0.50 120.30 124.05 C C C NE CZ NH2 ARG ARG ARG 185 185 185 N 1 B B NH2 OD2 ARG ASP 89 95 2.12 1_555 2_757 1 A LEU 170 77.16 -45.82 1 B LEU 170 77.87 -38.35 1 C LEU 170 76.78 -42.45 1 C GLU 191 -95.28 56.27 37.065 -0.64 0.00 -0.82 0.62 0.00 -1.11 0.944 0.886 0.25964 0.18668 0.19201 2.50 25.0 1620 20785 7.2 94.76 9.260 0.208 RANDOM 1 THROUGHOUT 0 MAD 0.594 0.313 0.80 0.80 1.20 MAXIMUM LIKELIHOOD BABINET MODEL WITH MASK 2.50 25.0 158 4454 54 0 4242 0.019 0.022 4365 1.886 2.006 5897 6.445 5.000 543 40.963 23.575 179 20.308 15.000 744 24.981 15.000 38 0.115 0.200 669 0.006 0.020 3211 0.242 0.200 2020 0.315 0.200 2949 0.176 0.200 206 0.244 0.200 117 0.214 0.200 26 0.948 1.500 2821 1.596 2.000 4421 2.549 3.000 1733 4.150 4.500 1476 0.306 0.237 2.565 126 1568 20 98.43 2.4 25 1XQI 25584 22330 0 0.105 1 87.3 2.40 2.55 98.8 refinement REFMAC 5.2.0005 data reduction MOSFLM data scaling CCP4 (SCALA) phasing SOLVE Crystal Structure Analysis of an NDP kinase from Pyrobaculum aerophilum 1 N N 1 N N 1 N N 2 N N 3 N N 2 N N 3 N N 2 N N 3 N N 4 N N 4 N N 4 N N A LYS 23 A LYS 23 HELX_P A ARG 29 A ARG 29 1 1 7 A LEU 31 A LEU 31 HELX_P A GLY 43 A GLY 43 1 2 13 A SER 55 A SER 55 HELX_P A TYR 63 A TYR 63 1 3 9 A SER 66 A SER 66 HELX_P A GLY 85 A GLY 85 1 4 20 A ASP 87 A ASP 87 HELX_P A GLY 93 A GLY 93 1 5 7 A ASP 96 A ASP 96 HELX_P A THR 113 A THR 113 1 6 18 A ARG 126 A ARG 126 HELX_P A GLY 136 A GLY 136 1 7 11 A SER 139 A SER 139 HELX_P A ALA 143 A ALA 143 5 8 5 A THR 147 A THR 147 HELX_P A SER 153 A SER 153 1 9 7 A SER 156 A SER 156 HELX_P A GLU 163 A GLU 163 1 10 8 A SER 176 A SER 176 HELX_P A PHE 188 A PHE 188 1 11 13 A ARG 189 A ARG 189 HELX_P A VAL 193 A VAL 193 5 12 5 B LYS 23 B LYS 23 HELX_P B ARG 29 B ARG 29 1 13 7 B LEU 31 B LEU 31 HELX_P B ALA 42 B ALA 42 1 14 12 B SER 55 B SER 55 HELX_P B TYR 63 B TYR 63 1 15 9 B SER 66 B SER 66 HELX_P B GLY 85 B GLY 85 1 16 20 B ASP 87 B ASP 87 HELX_P B ILE 92 B ILE 92 1 17 6 B ASP 96 B ASP 96 HELX_P B THR 113 B THR 113 1 18 18 B ARG 126 B ARG 126 HELX_P B GLY 136 B GLY 136 1 19 11 B SER 139 B SER 139 HELX_P B ALA 143 B ALA 143 5 20 5 B THR 147 B THR 147 HELX_P B SER 153 B SER 153 1 21 7 B SER 156 B SER 156 HELX_P B GLU 163 B GLU 163 1 22 8 B SER 176 B SER 176 HELX_P B PHE 188 B PHE 188 1 23 13 C LYS 23 C LYS 23 HELX_P C ARG 29 C ARG 29 1 24 7 C LEU 31 C LEU 31 HELX_P C GLY 43 C GLY 43 1 25 13 C SER 55 C SER 55 HELX_P C TYR 63 C TYR 63 1 26 9 C SER 66 C SER 66 HELX_P C LEU 84 C LEU 84 1 27 19 C ASP 87 C ASP 87 HELX_P C ILE 92 C ILE 92 1 28 6 C ASP 96 C ASP 96 HELX_P C MSE 112 C MSE 112 1 29 17 C ARG 126 C ARG 126 HELX_P C GLY 136 C GLY 136 1 30 11 C SER 139 C SER 139 HELX_P C ALA 143 C ALA 143 5 31 5 C THR 147 C THR 147 HELX_P C SER 153 C SER 153 1 32 7 C SER 156 C SER 156 HELX_P C GLU 163 C GLU 163 1 33 8 C SER 176 C SER 176 HELX_P C PHE 188 C PHE 188 1 34 13 C ARG 189 C ARG 189 HELX_P C VAL 193 C VAL 193 5 35 5 covale 1.335 both A LYS 50 A C LYS 50 1_555 A MSE 51 A N MSE 51 1_555 covale 1.334 both A MSE 51 A C MSE 51 1_555 A VAL 52 A N VAL 52 1_555 covale 1.339 both A TYR 111 A C TYR 111 1_555 A MSE 112 A N MSE 112 1_555 covale 1.325 both A MSE 112 A C MSE 112 1_555 A THR 113 A N THR 113 1_555 covale 1.325 both A VAL 119 A C VAL 119 1_555 A MSE 120 A N MSE 120 1_555 covale 1.325 both A MSE 120 A C MSE 120 1_555 A VAL 121 A N VAL 121 1_555 covale 1.330 both B LYS 50 B C LYS 50 1_555 B MSE 51 B N MSE 51 1_555 covale 1.341 both B MSE 51 B C MSE 51 1_555 B VAL 52 B N VAL 52 1_555 covale 1.334 both B TYR 111 B C TYR 111 1_555 B MSE 112 B N MSE 112 1_555 covale 1.326 both B MSE 112 B C MSE 112 1_555 B THR 113 B N THR 113 1_555 covale 1.333 both B VAL 119 B C VAL 119 1_555 B MSE 120 B N MSE 120 1_555 covale 1.333 both B MSE 120 B C MSE 120 1_555 B VAL 121 B N VAL 121 1_555 covale 1.332 both C LYS 50 C C LYS 50 1_555 C MSE 51 C N MSE 51 1_555 covale 1.339 both C MSE 51 C C MSE 51 1_555 C VAL 52 C N VAL 52 1_555 covale 1.329 both C TYR 111 C C TYR 111 1_555 C MSE 112 C N MSE 112 1_555 covale 1.327 both C MSE 112 C C MSE 112 1_555 C THR 113 C N THR 113 1_555 covale 1.322 both C VAL 119 C C VAL 119 1_555 C MSE 120 C N MSE 120 1_555 covale 1.321 both C MSE 120 C C MSE 120 1_555 C VAL 121 C N VAL 121 1_555 TRANSFERASE alpha/beta sandwich, ferredoxin fold, TRANSFERASE NDK_PYRAE UNP 1 1 Q8ZWY4 MHAINIAFFALIMPVEKTLLILKPDAVARGLVGEIISRFEKAGLKIVALKMVKASPEEIERFYPSSEEWLRSAGQKLLKA YQELGIDPRAKIGTDDPVEVGRIIKRSLVKYMTSGPIVVMVLKGNRAVEIVRKLVGPTSPHSAPPGTIRGDYSIDSPDLA AEEGRVVFNLVHASDSPSEAEREIRFWFREEEVLE 1 195 1XQI 1 195 Q8ZWY4 A 1 1 195 1 195 1XQI 1 195 Q8ZWY4 B 1 1 195 1 195 1XQI 1 195 Q8ZWY4 C 1 1 195 1 MET modified residue MSE 1 1XQI A Q8ZWY4 UNP 1 1 1 ALA engineered mutation ASP 10 1XQI A Q8ZWY4 UNP 10 10 1 MET modified residue MSE 13 1XQI A Q8ZWY4 UNP 13 13 1 GLY engineered mutation ASP 33 1XQI A Q8ZWY4 UNP 33 33 1 GLU engineered mutation LYS 40 1XQI A Q8ZWY4 UNP 40 40 1 MET modified residue MSE 51 1XQI A Q8ZWY4 UNP 51 51 1 ARG engineered mutation GLN 71 1XQI A Q8ZWY4 UNP 71 71 1 SER engineered mutation ASN 107 1XQI A Q8ZWY4 UNP 107 107 1 MET modified residue MSE 112 1XQI A Q8ZWY4 UNP 112 112 1 ILE engineered mutation ASN 117 1XQI A Q8ZWY4 UNP 117 117 1 MET modified residue MSE 120 1XQI A Q8ZWY4 UNP 120 120 2 MET modified residue MSE 1 1XQI B Q8ZWY4 UNP 1 1 2 ALA engineered mutation ASP 10 1XQI B Q8ZWY4 UNP 10 10 2 MET modified residue MSE 13 1XQI B Q8ZWY4 UNP 13 13 2 GLY engineered mutation ASP 33 1XQI B Q8ZWY4 UNP 33 33 2 GLU engineered mutation LYS 40 1XQI B Q8ZWY4 UNP 40 40 2 MET modified residue MSE 51 1XQI B Q8ZWY4 UNP 51 51 2 ARG engineered mutation GLN 71 1XQI B Q8ZWY4 UNP 71 71 2 SER engineered mutation ASN 107 1XQI B Q8ZWY4 UNP 107 107 2 MET modified residue MSE 112 1XQI B Q8ZWY4 UNP 112 112 2 ILE engineered mutation ASN 117 1XQI B Q8ZWY4 UNP 117 117 2 MET modified residue MSE 120 1XQI B Q8ZWY4 UNP 120 120 3 MET modified residue MSE 1 1XQI C Q8ZWY4 UNP 1 1 3 ALA engineered mutation ASP 10 1XQI C Q8ZWY4 UNP 10 10 3 MET modified residue MSE 13 1XQI C Q8ZWY4 UNP 13 13 3 GLY engineered mutation ASP 33 1XQI C Q8ZWY4 UNP 33 33 3 GLU engineered mutation LYS 40 1XQI C Q8ZWY4 UNP 40 40 3 MET modified residue MSE 51 1XQI C Q8ZWY4 UNP 51 51 3 ARG engineered mutation GLN 71 1XQI C Q8ZWY4 UNP 71 71 3 SER engineered mutation ASN 107 1XQI C Q8ZWY4 UNP 107 107 3 MET modified residue MSE 112 1XQI C Q8ZWY4 UNP 112 112 3 ILE engineered mutation ASN 117 1XQI C Q8ZWY4 UNP 117 117 3 MET modified residue MSE 120 1XQI C Q8ZWY4 UNP 120 120 4 4 4 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A LYS 45 A LYS 45 A VAL 52 A VAL 52 A ASN 117 A ASN 117 A LYS 123 A LYS 123 A LYS 17 A LYS 17 A LEU 22 A LEU 22 A VAL 171 A VAL 171 A ALA 173 A ALA 173 B LYS 45 B LYS 45 B VAL 52 B VAL 52 B ASN 117 B ASN 117 B LYS 123 B LYS 123 B LYS 17 B LYS 17 B LEU 22 B LEU 22 B VAL 171 B VAL 171 B ALA 173 B ALA 173 C LYS 45 C LYS 45 C VAL 52 C VAL 52 C ASN 117 C ASN 117 C LYS 123 C LYS 123 C LYS 17 C LYS 17 C LEU 22 C LEU 22 C VAL 171 C VAL 171 C ALA 173 C ALA 173 BINDING SITE FOR RESIDUE TRS A 200 A TRS 200 Software 5 BINDING SITE FOR RESIDUE TRS B 300 B TRS 300 Software 8 BINDING SITE FOR RESIDUE TRS C 400 C TRS 400 Software 8 BINDING SITE FOR RESIDUE PGE A 500 A PGE 500 Software 11 BINDING SITE FOR RESIDUE PGE B 600 B PGE 600 Software 11 BINDING SITE FOR RESIDUE PGE C 700 C PGE 700 Software 11 A LYS 23 A LYS 23 5 1_555 A TYR 63 A TYR 63 5 1_555 A ASN 169 A ASN 169 5 1_555 A HIS 172 A HIS 172 5 1_555 A PGE 500 E PGE 5 1_555 B LYS 23 B LYS 23 8 1_555 B TYR 63 B TYR 63 8 1_555 B THR 138 B THR 138 8 1_555 B ASN 169 B ASN 169 8 1_555 B VAL 171 B VAL 171 8 1_555 B HIS 172 B HIS 172 8 1_555 B PGE 600 G PGE 8 1_555 B HOH 613 K HOH 8 1_555 C LYS 23 C LYS 23 8 1_555 C TYR 63 C TYR 63 8 1_555 C THR 138 C THR 138 8 1_555 C ASN 169 C ASN 169 8 1_555 C HIS 172 C HIS 172 8 1_555 C PGE 700 I PGE 8 1_555 C HOH 730 L HOH 8 1_555 C HOH 755 L HOH 8 1_555 A TYR 63 A TYR 63 11 1_555 A PRO 64 A PRO 64 11 1_555 A TRP 69 A TRP 69 11 1_555 A HIS 172 A HIS 172 11 1_555 A ALA 173 A ALA 173 11 1_555 A SER 174 A SER 174 11 1_555 A ASP 175 A ASP 175 11 1_555 A GLU 179 A GLU 179 11 1_555 A GLU 183 A GLU 183 11 1_555 A TRS 200 D TRS 11 1_555 A HOH 505 J HOH 11 1_555 B TYR 63 B TYR 63 11 1_555 B PRO 64 B PRO 64 11 1_555 B TRP 69 B TRP 69 11 1_555 B HIS 172 B HIS 172 11 1_555 B ALA 173 B ALA 173 11 1_555 B SER 174 B SER 174 11 1_555 B ASP 175 B ASP 175 11 1_555 B GLU 179 B GLU 179 11 1_555 B GLU 183 B GLU 183 11 1_555 B TRS 300 F TRS 11 1_555 B HOH 653 K HOH 11 1_555 C TYR 63 C TYR 63 11 1_555 C PRO 64 C PRO 64 11 1_555 C TRP 69 C TRP 69 11 1_555 C HIS 172 C HIS 172 11 1_555 C ALA 173 C ALA 173 11 1_555 C SER 174 C SER 174 11 1_555 C ASP 175 C ASP 175 11 1_555 C GLU 179 C GLU 179 11 1_555 C GLU 183 C GLU 183 11 1_555 C TRS 400 H TRS 11 1_555 C HOH 749 L HOH 11 1_555 5 C 1 2 1