0.010045
0.005800
0.000000
0.000000
0.011599
0.000000
0.000000
0.000000
0.012491
0.00000
0.00000
0.00000
Knapp, S.
Debreczeni, J.
Bullock, A.
von Delft, F.
Sundstrom, M.
Arrowsmith, C.
Edwards, A.
Guo, K.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
99.550
99.550
80.060
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C25 H24 N4 O2
412.484
3-{1-[3-(DIMETHYLAMINO)PROPYL]-1H-INDOL-3-YL}-4-(1H-INDOL-3-YL)-1H-PYRROLE-2,5-DIONE
RBT205 INHIBITOR
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
C
N
75
N
N
N
76
N
C
N
77
N
C
N
78
N
C
N
79
N
C
Y
80
N
N
Y
81
N
C
Y
82
N
C
Y
83
N
C
Y
84
N
C
Y
85
N
C
Y
86
N
C
Y
87
N
C
Y
88
N
C
N
89
N
C
N
90
N
C
N
91
N
O
N
92
N
N
N
93
N
C
N
94
N
O
N
95
N
C
Y
96
N
C
Y
97
N
C
Y
98
N
C
Y
99
N
C
Y
100
N
C
Y
101
N
C
Y
102
N
C
Y
103
N
N
Y
104
N
C
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
N
N
130
R
C
N
131
N
C
N
132
N
O
N
133
N
C
N
134
N
S
N
135
N
O
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
N
N
144
S
C
N
145
N
C
N
146
N
O
N
147
N
C
N
148
N
C
N
149
N
C
N
150
N
O
N
151
N
N
N
152
N
O
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
N
N
164
S
C
N
165
N
C
N
166
N
O
N
167
N
C
N
168
N
C
N
169
N
C
N
170
N
O
N
171
N
O
N
172
N
O
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
N
N
183
N
C
N
184
N
C
N
185
N
O
N
186
N
O
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
N
N
193
S
C
N
194
N
C
N
195
N
O
N
196
N
C
Y
197
N
C
Y
198
N
N
Y
199
N
C
Y
200
N
C
Y
201
N
N
N
202
N
O
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
O
N
214
N
H
N
215
N
H
N
216
N
N
N
217
S
C
N
218
N
C
N
219
N
O
N
220
S
C
N
221
N
C
N
222
N
C
N
223
N
C
N
224
N
O
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
N
N
239
S
C
N
240
N
C
N
241
N
O
N
242
N
C
N
243
N
C
N
244
N
C
N
245
N
C
N
246
N
O
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
N
N
261
S
C
N
262
N
C
N
263
N
O
N
264
N
C
N
265
N
C
N
266
N
C
N
267
N
C
N
268
N
N
N
269
N
O
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
N
N
286
S
C
N
287
N
C
N
288
N
O
N
289
N
C
N
290
N
C
N
291
N
S
N
292
N
C
N
293
N
O
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
N
N
306
S
C
N
307
N
C
N
308
N
O
N
309
N
C
Y
310
N
C
Y
311
N
C
Y
312
N
C
Y
313
N
C
Y
314
N
C
Y
315
N
C
N
316
N
O
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
N
N
329
S
C
N
330
N
C
N
331
N
O
N
332
N
C
N
333
N
C
N
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
N
N
346
S
C
N
347
N
C
N
348
N
O
N
349
N
C
N
350
N
O
N
351
N
O
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
S
N
360
N
O
N
361
N
O
N
362
N
O
N
363
N
O
N
364
N
N
N
365
S
C
N
366
N
C
N
367
N
O
N
368
R
C
N
369
N
O
N
370
N
C
N
371
N
O
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
N
N
382
S
C
N
383
N
C
N
384
N
O
N
385
N
C
Y
386
N
C
Y
387
N
C
Y
388
N
C
Y
389
N
N
Y
390
N
C
Y
391
N
C
Y
392
N
C
Y
393
N
C
Y
394
N
C
N
395
N
O
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
N
N
409
S
C
N
410
N
C
N
411
N
O
N
412
N
C
Y
413
N
C
Y
414
N
C
Y
415
N
C
Y
416
N
C
Y
417
N
C
Y
418
N
C
N
419
N
O
N
420
N
O
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
N
N
433
S
C
N
434
N
C
N
435
N
O
N
436
N
C
N
437
N
C
N
438
N
C
N
439
N
O
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
Y
88
N
sing
Y
89
N
sing
Y
90
N
doub
N
91
N
sing
Y
92
N
sing
Y
93
N
doub
Y
94
N
doub
N
95
N
sing
Y
96
N
sing
N
97
N
sing
Y
98
N
doub
N
99
N
sing
Y
100
N
sing
N
101
N
sing
Y
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
doub
N
106
N
doub
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
doub
N
111
N
sing
N
112
N
sing
Y
113
N
sing
Y
114
N
doub
Y
115
N
sing
Y
116
N
doub
Y
117
N
doub
N
118
N
sing
Y
119
N
sing
N
120
N
sing
Y
121
N
doub
N
122
N
sing
Y
123
N
sing
N
124
N
sing
Y
125
N
sing
Y
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
doub
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
doub
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
doub
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
doub
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
doub
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
Y
199
N
sing
Y
200
N
doub
Y
201
N
doub
N
202
N
sing
Y
203
N
sing
N
204
N
sing
Y
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
doub
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
doub
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
doub
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
doub
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
Y
307
N
doub
Y
308
N
sing
Y
309
N
sing
N
310
N
sing
Y
311
N
doub
N
312
N
sing
Y
313
N
doub
N
314
N
sing
Y
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
doub
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
doub
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
doub
N
350
N
doub
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
doub
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
doub
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
Y
380
N
doub
Y
381
N
sing
Y
382
N
sing
N
383
N
sing
Y
384
N
doub
Y
385
N
sing
Y
386
N
sing
N
387
N
sing
Y
388
N
sing
Y
389
N
doub
N
390
N
sing
Y
391
N
doub
N
392
N
sing
Y
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
doub
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
Y
408
N
doub
Y
409
N
sing
Y
410
N
sing
N
411
N
sing
Y
412
N
doub
N
413
N
sing
Y
414
N
doub
N
415
N
sing
Y
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
doub
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
To be Published
0353
Crystal structure of human PIM1 kinase domain
10.2210/pdb1xws/pdb
pdb_00001xws
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
Multi-layer VariMax HR
IMAGE PLATE
2004-10-21
RIGAKU RAXIS HTC
Copper K-alpha
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU FR-E
35732.746
Proto-oncogene serine/threonine-protein kinase Pim-1
2.7.1.37
1
man
polymer
96.063
SULFATE ION
1
syn
non-polymer
412.484
3-{1-[3-(DIMETHYLAMINO)PROPYL]-1H-INDOL-3-YL}-4-(1H-INDOL-3-YL)-1H-PYRROLE-2,5-DIONE
1
syn
non-polymer
18.015
water
242
nat
water
PIM1
no
no
MLLSKINSLAHLRAAPCNDLHATKLAPGKEKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGEL
PNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHN
CGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDI
PFEHDEEIIRGQVFFRQRVSSECQHLIRWCLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLHSLSPGPSK
MLLSKINSLAHLRAAPCNDLHATKLAPGKEKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGEL
PNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHN
CGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDI
PFEHDEEIIRGQVFFRQRVSSECQHLIRWCLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLHSLSPGPSK
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
sample
9606
Homo sapiens
562
Escherichia coli
plasmid
p11-Toronto
1
3.7
66.9
VAPOR DIFFUSION, SITTING DROP
6.5
Na2SO4, Bis-Tris propane, PEG3350, Ethylene Glycol, DMSO, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
277
chem_comp_atom
chem_comp_bond
database_2
struct_site
repository
Initial release
Version format compliance
Advisory
Version format compliance
Data collection
Database references
Derived calculations
1
0
2004-11-16
1
1
2008-04-30
1
2
2011-07-13
1
3
2024-03-13
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
PDBJ
2004-11-02
REL
REL
SO4
SULFATE ION
BI1
3-{1-[3-(DIMETHYLAMINO)PROPYL]-1H-INDOL-3-YL}-4-(1H-INDOL-3-YL)-1H-PYRROLE-2,5-DIONE
HOH
water
SUL
1
2
SO4
SO4
2001
A
AIM
1
3
BI1
BI1
1001
A
HOH
1
4
HOH
HOH
2002
A
HOH
2
4
HOH
HOH
2003
A
HOH
3
4
HOH
HOH
2004
A
HOH
4
4
HOH
HOH
2005
A
HOH
5
4
HOH
HOH
2006
A
HOH
6
4
HOH
HOH
2007
A
HOH
7
4
HOH
HOH
2008
A
HOH
8
4
HOH
HOH
2009
A
HOH
9
4
HOH
HOH
2010
A
HOH
10
4
HOH
HOH
2011
A
HOH
11
4
HOH
HOH
2012
A
HOH
12
4
HOH
HOH
2013
A
HOH
13
4
HOH
HOH
2014
A
HOH
14
4
HOH
HOH
2015
A
HOH
15
4
HOH
HOH
2016
A
HOH
16
4
HOH
HOH
2017
A
HOH
17
4
HOH
HOH
2018
A
HOH
18
4
HOH
HOH
2019
A
HOH
19
4
HOH
HOH
2020
A
HOH
20
4
HOH
HOH
2021
A
HOH
21
4
HOH
HOH
2022
A
HOH
22
4
HOH
HOH
2023
A
HOH
23
4
HOH
HOH
2024
A
HOH
24
4
HOH
HOH
2025
A
HOH
25
4
HOH
HOH
2026
A
HOH
26
4
HOH
HOH
2027
A
HOH
27
4
HOH
HOH
2028
A
HOH
28
4
HOH
HOH
2029
A
HOH
29
4
HOH
HOH
2030
A
HOH
30
4
HOH
HOH
2031
A
HOH
31
4
HOH
HOH
2032
A
HOH
32
4
HOH
HOH
2033
A
HOH
33
4
HOH
HOH
2034
A
HOH
34
4
HOH
HOH
2035
A
HOH
35
4
HOH
HOH
2036
A
HOH
36
4
HOH
HOH
2037
A
HOH
37
4
HOH
HOH
2038
A
HOH
38
4
HOH
HOH
2039
A
HOH
39
4
HOH
HOH
2040
A
HOH
40
4
HOH
HOH
2041
A
HOH
41
4
HOH
HOH
2042
A
HOH
42
4
HOH
HOH
2043
A
HOH
43
4
HOH
HOH
2044
A
HOH
44
4
HOH
HOH
2045
A
HOH
45
4
HOH
HOH
2046
A
HOH
46
4
HOH
HOH
2047
A
HOH
47
4
HOH
HOH
2048
A
HOH
48
4
HOH
HOH
2049
A
HOH
49
4
HOH
HOH
2050
A
HOH
50
4
HOH
HOH
2051
A
HOH
51
4
HOH
HOH
2052
A
HOH
52
4
HOH
HOH
2053
A
HOH
53
4
HOH
HOH
2054
A
HOH
54
4
HOH
HOH
2055
A
HOH
55
4
HOH
HOH
2056
A
HOH
56
4
HOH
HOH
2057
A
HOH
57
4
HOH
HOH
2058
A
HOH
58
4
HOH
HOH
2059
A
HOH
59
4
HOH
HOH
2060
A
HOH
60
4
HOH
HOH
2061
A
HOH
61
4
HOH
HOH
2062
A
HOH
62
4
HOH
HOH
2063
A
HOH
63
4
HOH
HOH
2064
A
HOH
64
4
HOH
HOH
2065
A
HOH
65
4
HOH
HOH
2066
A
HOH
66
4
HOH
HOH
2067
A
HOH
67
4
HOH
HOH
2068
A
HOH
68
4
HOH
HOH
2069
A
HOH
69
4
HOH
HOH
2070
A
HOH
70
4
HOH
HOH
2071
A
HOH
71
4
HOH
HOH
2072
A
HOH
72
4
HOH
HOH
2073
A
HOH
73
4
HOH
HOH
2074
A
HOH
74
4
HOH
HOH
2075
A
HOH
75
4
HOH
HOH
2076
A
HOH
76
4
HOH
HOH
2077
A
HOH
77
4
HOH
HOH
2078
A
HOH
78
4
HOH
HOH
2079
A
HOH
79
4
HOH
HOH
2080
A
HOH
80
4
HOH
HOH
2081
A
HOH
81
4
HOH
HOH
2082
A
HOH
82
4
HOH
HOH
2083
A
HOH
83
4
HOH
HOH
2084
A
HOH
84
4
HOH
HOH
2085
A
HOH
85
4
HOH
HOH
2086
A
HOH
86
4
HOH
HOH
2087
A
HOH
87
4
HOH
HOH
2088
A
HOH
88
4
HOH
HOH
2089
A
HOH
89
4
HOH
HOH
2090
A
HOH
90
4
HOH
HOH
2091
A
HOH
91
4
HOH
HOH
2092
A
HOH
92
4
HOH
HOH
2093
A
HOH
93
4
HOH
HOH
2094
A
HOH
94
4
HOH
HOH
2095
A
HOH
95
4
HOH
HOH
2096
A
HOH
96
4
HOH
HOH
2097
A
HOH
97
4
HOH
HOH
2098
A
HOH
98
4
HOH
HOH
2099
A
HOH
99
4
HOH
HOH
2100
A
HOH
100
4
HOH
HOH
2101
A
HOH
101
4
HOH
HOH
2102
A
HOH
102
4
HOH
HOH
2103
A
HOH
103
4
HOH
HOH
2104
A
HOH
104
4
HOH
HOH
2105
A
HOH
105
4
HOH
HOH
2106
A
HOH
106
4
HOH
HOH
2107
A
HOH
107
4
HOH
HOH
2108
A
HOH
108
4
HOH
HOH
2109
A
HOH
109
4
HOH
HOH
2110
A
HOH
110
4
HOH
HOH
2111
A
HOH
111
4
HOH
HOH
2112
A
HOH
112
4
HOH
HOH
2113
A
HOH
113
4
HOH
HOH
2114
A
HOH
114
4
HOH
HOH
2115
A
HOH
115
4
HOH
HOH
2116
A
HOH
116
4
HOH
HOH
2117
A
HOH
117
4
HOH
HOH
2118
A
HOH
118
4
HOH
HOH
2119
A
HOH
119
4
HOH
HOH
2120
A
HOH
120
4
HOH
HOH
2121
A
HOH
121
4
HOH
HOH
2122
A
HOH
122
4
HOH
HOH
2123
A
HOH
123
4
HOH
HOH
2124
A
HOH
124
4
HOH
HOH
2125
A
HOH
125
4
HOH
HOH
2126
A
HOH
126
4
HOH
HOH
2127
A
HOH
127
4
HOH
HOH
2128
A
HOH
128
4
HOH
HOH
2129
A
HOH
129
4
HOH
HOH
2130
A
HOH
130
4
HOH
HOH
2131
A
HOH
131
4
HOH
HOH
2132
A
HOH
132
4
HOH
HOH
2133
A
HOH
133
4
HOH
HOH
2134
A
HOH
134
4
HOH
HOH
2135
A
HOH
135
4
HOH
HOH
2136
A
HOH
136
4
HOH
HOH
2137
A
HOH
137
4
HOH
HOH
2138
A
HOH
138
4
HOH
HOH
2139
A
HOH
139
4
HOH
HOH
2140
A
HOH
140
4
HOH
HOH
2141
A
HOH
141
4
HOH
HOH
2142
A
HOH
142
4
HOH
HOH
2143
A
HOH
143
4
HOH
HOH
2144
A
HOH
144
4
HOH
HOH
2145
A
HOH
145
4
HOH
HOH
2146
A
HOH
146
4
HOH
HOH
2147
A
HOH
147
4
HOH
HOH
2148
A
HOH
148
4
HOH
HOH
2149
A
HOH
149
4
HOH
HOH
2150
A
HOH
150
4
HOH
HOH
2151
A
HOH
151
4
HOH
HOH
2152
A
HOH
152
4
HOH
HOH
2153
A
HOH
153
4
HOH
HOH
2154
A
HOH
154
4
HOH
HOH
2155
A
HOH
155
4
HOH
HOH
2156
A
HOH
156
4
HOH
HOH
2157
A
HOH
157
4
HOH
HOH
2158
A
HOH
158
4
HOH
HOH
2159
A
HOH
159
4
HOH
HOH
2160
A
HOH
160
4
HOH
HOH
2161
A
HOH
161
4
HOH
HOH
2162
A
HOH
162
4
HOH
HOH
2163
A
HOH
163
4
HOH
HOH
2164
A
HOH
164
4
HOH
HOH
2165
A
HOH
165
4
HOH
HOH
2166
A
HOH
166
4
HOH
HOH
2167
A
HOH
167
4
HOH
HOH
2168
A
HOH
168
4
HOH
HOH
2169
A
HOH
169
4
HOH
HOH
2170
A
HOH
170
4
HOH
HOH
2171
A
HOH
171
4
HOH
HOH
2172
A
HOH
172
4
HOH
HOH
2173
A
HOH
173
4
HOH
HOH
2174
A
HOH
174
4
HOH
HOH
2175
A
HOH
175
4
HOH
HOH
2176
A
HOH
176
4
HOH
HOH
2177
A
HOH
177
4
HOH
HOH
2178
A
HOH
178
4
HOH
HOH
2179
A
HOH
179
4
HOH
HOH
2180
A
HOH
180
4
HOH
HOH
2181
A
HOH
181
4
HOH
HOH
2182
A
HOH
182
4
HOH
HOH
2183
A
HOH
183
4
HOH
HOH
2184
A
HOH
184
4
HOH
HOH
2185
A
HOH
185
4
HOH
HOH
2186
A
HOH
186
4
HOH
HOH
2187
A
HOH
187
4
HOH
HOH
2188
A
HOH
188
4
HOH
HOH
2189
A
HOH
189
4
HOH
HOH
2190
A
HOH
190
4
HOH
HOH
2191
A
HOH
191
4
HOH
HOH
2192
A
HOH
192
4
HOH
HOH
2193
A
HOH
193
4
HOH
HOH
2194
A
HOH
194
4
HOH
HOH
2195
A
HOH
195
4
HOH
HOH
2196
A
HOH
196
4
HOH
HOH
2197
A
HOH
197
4
HOH
HOH
2198
A
HOH
198
4
HOH
HOH
2199
A
HOH
199
4
HOH
HOH
2200
A
HOH
200
4
HOH
HOH
2201
A
HOH
201
4
HOH
HOH
2202
A
HOH
202
4
HOH
HOH
2203
A
HOH
203
4
HOH
HOH
2204
A
HOH
204
4
HOH
HOH
2205
A
HOH
205
4
HOH
HOH
2206
A
HOH
206
4
HOH
HOH
2207
A
HOH
207
4
HOH
HOH
2208
A
HOH
208
4
HOH
HOH
2209
A
HOH
209
4
HOH
HOH
2210
A
HOH
210
4
HOH
HOH
2211
A
HOH
211
4
HOH
HOH
2212
A
HOH
212
4
HOH
HOH
2213
A
HOH
213
4
HOH
HOH
2214
A
HOH
214
4
HOH
HOH
2215
A
HOH
215
4
HOH
HOH
2216
A
HOH
216
4
HOH
HOH
2217
A
HOH
217
4
HOH
HOH
2218
A
HOH
218
4
HOH
HOH
2219
A
HOH
219
4
HOH
HOH
2220
A
HOH
220
4
HOH
HOH
2221
A
HOH
221
4
HOH
HOH
2222
A
HOH
222
4
HOH
HOH
2223
A
HOH
223
4
HOH
HOH
2224
A
HOH
224
4
HOH
HOH
2225
A
HOH
225
4
HOH
HOH
2226
A
HOH
226
4
HOH
HOH
2227
A
HOH
227
4
HOH
HOH
2228
A
HOH
228
4
HOH
HOH
2229
A
HOH
229
4
HOH
HOH
2230
A
HOH
230
4
HOH
HOH
2231
A
HOH
231
4
HOH
HOH
2232
A
HOH
232
4
HOH
HOH
2233
A
HOH
233
4
HOH
HOH
2234
A
HOH
234
4
HOH
HOH
2235
A
HOH
235
4
HOH
HOH
2236
A
HOH
236
4
HOH
HOH
2237
A
HOH
237
4
HOH
HOH
2238
A
HOH
238
4
HOH
HOH
2239
A
HOH
239
4
HOH
HOH
2240
A
HOH
240
4
HOH
HOH
2241
A
HOH
241
4
HOH
HOH
2242
A
HOH
242
4
HOH
HOH
2243
A
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
n
6
6
A
n
7
7
A
n
8
8
A
n
9
9
A
n
10
10
A
n
11
11
A
n
12
12
A
n
13
13
A
n
14
14
A
n
15
15
A
n
16
16
A
n
17
17
A
n
18
18
A
n
19
19
A
n
20
20
A
n
21
21
A
n
22
22
A
n
23
23
A
n
24
24
A
n
25
25
A
n
26
26
A
n
27
27
A
n
28
28
A
n
29
29
A
n
30
30
A
n
31
31
A
n
32
32
A
PRO
33
n
33
PRO
33
A
LEU
34
n
34
LEU
34
A
GLU
35
n
35
GLU
35
A
SER
36
n
36
SER
36
A
GLN
37
n
37
GLN
37
A
TYR
38
n
38
TYR
38
A
GLN
39
n
39
GLN
39
A
VAL
40
n
40
VAL
40
A
GLY
41
n
41
GLY
41
A
PRO
42
n
42
PRO
42
A
LEU
43
n
43
LEU
43
A
LEU
44
n
44
LEU
44
A
GLY
45
n
45
GLY
45
A
SER
46
n
46
SER
46
A
GLY
47
n
47
GLY
47
A
GLY
48
n
48
GLY
48
A
PHE
49
n
49
PHE
49
A
GLY
50
n
50
GLY
50
A
SER
51
n
51
SER
51
A
VAL
52
n
52
VAL
52
A
TYR
53
n
53
TYR
53
A
SER
54
n
54
SER
54
A
GLY
55
n
55
GLY
55
A
ILE
56
n
56
ILE
56
A
ARG
57
n
57
ARG
57
A
VAL
58
n
58
VAL
58
A
SER
59
n
59
SER
59
A
ASP
60
n
60
ASP
60
A
ASN
61
n
61
ASN
61
A
LEU
62
n
62
LEU
62
A
PRO
63
n
63
PRO
63
A
VAL
64
n
64
VAL
64
A
ALA
65
n
65
ALA
65
A
ILE
66
n
66
ILE
66
A
LYS
67
n
67
LYS
67
A
HIS
68
n
68
HIS
68
A
VAL
69
n
69
VAL
69
A
GLU
70
n
70
GLU
70
A
LYS
71
n
71
LYS
71
A
ASP
72
n
72
ASP
72
A
ARG
73
n
73
ARG
73
A
ILE
74
n
74
ILE
74
A
SER
75
n
75
SER
75
A
ASP
76
n
76
ASP
76
A
TRP
77
n
77
TRP
77
A
GLY
78
n
78
GLY
78
A
GLU
79
n
79
GLU
79
A
LEU
80
n
80
LEU
80
A
PRO
81
n
81
PRO
81
A
ASN
82
n
82
ASN
82
A
GLY
83
n
83
GLY
83
A
THR
84
n
84
THR
84
A
ARG
85
n
85
ARG
85
A
VAL
86
n
86
VAL
86
A
PRO
87
n
87
PRO
87
A
MET
88
n
88
MET
88
A
GLU
89
n
89
GLU
89
A
VAL
90
n
90
VAL
90
A
VAL
91
n
91
VAL
91
A
LEU
92
n
92
LEU
92
A
LEU
93
n
93
LEU
93
A
LYS
94
n
94
LYS
94
A
LYS
95
n
95
LYS
95
A
VAL
96
n
96
VAL
96
A
SER
97
n
97
SER
97
A
SER
98
n
98
SER
98
A
GLY
99
n
99
GLY
99
A
PHE
100
n
100
PHE
100
A
SER
101
n
101
SER
101
A
GLY
102
n
102
GLY
102
A
VAL
103
n
103
VAL
103
A
ILE
104
n
104
ILE
104
A
ARG
105
n
105
ARG
105
A
LEU
106
n
106
LEU
106
A
LEU
107
n
107
LEU
107
A
ASP
108
n
108
ASP
108
A
TRP
109
n
109
TRP
109
A
PHE
110
n
110
PHE
110
A
GLU
111
n
111
GLU
111
A
ARG
112
n
112
ARG
112
A
PRO
113
n
113
PRO
113
A
ASP
114
n
114
ASP
114
A
SER
115
n
115
SER
115
A
PHE
116
n
116
PHE
116
A
VAL
117
n
117
VAL
117
A
LEU
118
n
118
LEU
118
A
ILE
119
n
119
ILE
119
A
LEU
120
n
120
LEU
120
A
GLU
121
n
121
GLU
121
A
ARG
122
n
122
ARG
122
A
PRO
123
n
123
PRO
123
A
GLU
124
n
124
GLU
124
A
PRO
125
n
125
PRO
125
A
VAL
126
n
126
VAL
126
A
GLN
127
n
127
GLN
127
A
ASP
128
n
128
ASP
128
A
LEU
129
n
129
LEU
129
A
PHE
130
n
130
PHE
130
A
ASP
131
n
131
ASP
131
A
PHE
132
n
132
PHE
132
A
ILE
133
n
133
ILE
133
A
THR
134
n
134
THR
134
A
GLU
135
n
135
GLU
135
A
ARG
136
n
136
ARG
136
A
GLY
137
n
137
GLY
137
A
ALA
138
n
138
ALA
138
A
LEU
139
n
139
LEU
139
A
GLN
140
n
140
GLN
140
A
GLU
141
n
141
GLU
141
A
GLU
142
n
142
GLU
142
A
LEU
143
n
143
LEU
143
A
ALA
144
n
144
ALA
144
A
ARG
145
n
145
ARG
145
A
SER
146
n
146
SER
146
A
PHE
147
n
147
PHE
147
A
PHE
148
n
148
PHE
148
A
TRP
149
n
149
TRP
149
A
GLN
150
n
150
GLN
150
A
VAL
151
n
151
VAL
151
A
LEU
152
n
152
LEU
152
A
GLU
153
n
153
GLU
153
A
ALA
154
n
154
ALA
154
A
VAL
155
n
155
VAL
155
A
ARG
156
n
156
ARG
156
A
HIS
157
n
157
HIS
157
A
CYS
158
n
158
CYS
158
A
HIS
159
n
159
HIS
159
A
ASN
160
n
160
ASN
160
A
CYS
161
n
161
CYS
161
A
GLY
162
n
162
GLY
162
A
VAL
163
n
163
VAL
163
A
LEU
164
n
164
LEU
164
A
HIS
165
n
165
HIS
165
A
ARG
166
n
166
ARG
166
A
ASP
167
n
167
ASP
167
A
ILE
168
n
168
ILE
168
A
LYS
169
n
169
LYS
169
A
ASP
170
n
170
ASP
170
A
GLU
171
n
171
GLU
171
A
ASN
172
n
172
ASN
172
A
ILE
173
n
173
ILE
173
A
LEU
174
n
174
LEU
174
A
ILE
175
n
175
ILE
175
A
ASP
176
n
176
ASP
176
A
LEU
177
n
177
LEU
177
A
ASN
178
n
178
ASN
178
A
ARG
179
n
179
ARG
179
A
GLY
180
n
180
GLY
180
A
GLU
181
n
181
GLU
181
A
LEU
182
n
182
LEU
182
A
LYS
183
n
183
LYS
183
A
LEU
184
n
184
LEU
184
A
ILE
185
n
185
ILE
185
A
ASP
186
n
186
ASP
186
A
PHE
187
n
187
PHE
187
A
GLY
188
n
188
GLY
188
A
SER
189
n
189
SER
189
A
GLY
190
n
190
GLY
190
A
ALA
191
n
191
ALA
191
A
LEU
192
n
192
LEU
192
A
LEU
193
n
193
LEU
193
A
LYS
194
n
194
LYS
194
A
ASP
195
n
195
ASP
195
A
THR
196
n
196
THR
196
A
VAL
197
n
197
VAL
197
A
TYR
198
n
198
TYR
198
A
THR
199
n
199
THR
199
A
ASP
200
n
200
ASP
200
A
PHE
201
n
201
PHE
201
A
ASP
202
n
202
ASP
202
A
GLY
203
n
203
GLY
203
A
THR
204
n
204
THR
204
A
ARG
205
n
205
ARG
205
A
VAL
206
n
206
VAL
206
A
TYR
207
n
207
TYR
207
A
SER
208
n
208
SER
208
A
PRO
209
n
209
PRO
209
A
PRO
210
n
210
PRO
210
A
GLU
211
n
211
GLU
211
A
TRP
212
n
212
TRP
212
A
ILE
213
n
213
ILE
213
A
ARG
214
n
214
ARG
214
A
TYR
215
n
215
TYR
215
A
HIS
216
n
216
HIS
216
A
ARG
217
n
217
ARG
217
A
TYR
218
n
218
TYR
218
A
HIS
219
n
219
HIS
219
A
GLY
220
n
220
GLY
220
A
ARG
221
n
221
ARG
221
A
SER
222
n
222
SER
222
A
ALA
223
n
223
ALA
223
A
ALA
224
n
224
ALA
224
A
VAL
225
n
225
VAL
225
A
TRP
226
n
226
TRP
226
A
SER
227
n
227
SER
227
A
LEU
228
n
228
LEU
228
A
GLY
229
n
229
GLY
229
A
ILE
230
n
230
ILE
230
A
LEU
231
n
231
LEU
231
A
LEU
232
n
232
LEU
232
A
TYR
233
n
233
TYR
233
A
ASP
234
n
234
ASP
234
A
MET
235
n
235
MET
235
A
VAL
236
n
236
VAL
236
A
CYS
237
n
237
CYS
237
A
GLY
238
n
238
GLY
238
A
ASP
239
n
239
ASP
239
A
ILE
240
n
240
ILE
240
A
PRO
241
n
241
PRO
241
A
PHE
242
n
242
PHE
242
A
GLU
243
n
243
GLU
243
A
HIS
244
n
244
HIS
244
A
ASP
245
n
245
ASP
245
A
GLU
246
n
246
GLU
246
A
GLU
247
n
247
GLU
247
A
ILE
248
n
248
ILE
248
A
ILE
249
n
249
ILE
249
A
GLY
250
n
250
ARG
250
A
GLY
251
n
251
GLY
251
A
GLN
252
n
252
GLN
252
A
VAL
253
n
253
VAL
253
A
PHE
254
n
254
PHE
254
A
PHE
255
n
255
PHE
255
A
ARG
256
n
256
ARG
256
A
GLN
257
n
257
GLN
257
A
ARG
258
n
258
ARG
258
A
VAL
259
n
259
VAL
259
A
SER
260
n
260
SER
260
A
SER
261
n
261
SER
261
A
GLU
262
n
262
GLU
262
A
CYS
263
n
263
CYS
263
A
GLN
264
n
264
GLN
264
A
HIS
265
n
265
HIS
265
A
LEU
266
n
266
LEU
266
A
ILE
267
n
267
ILE
267
A
ARG
268
n
268
ARG
268
A
TRP
269
n
269
TRP
269
A
CYS
270
n
270
CYS
270
A
LEU
271
n
271
LEU
271
A
ALA
272
n
272
ALA
272
A
LEU
273
n
273
LEU
273
A
ARG
274
n
274
ARG
274
A
PRO
275
n
275
PRO
275
A
SER
276
n
276
SER
276
A
ASP
277
n
277
ASP
277
A
ARG
278
n
278
ARG
278
A
PRO
279
n
279
PRO
279
A
THR
280
n
280
THR
280
A
PHE
281
n
281
PHE
281
A
GLU
282
n
282
GLU
282
A
GLU
283
n
283
GLU
283
A
ILE
284
n
284
ILE
284
A
GLN
285
n
285
GLN
285
A
ASN
286
n
286
ASN
286
A
HIS
287
n
287
HIS
287
A
PRO
288
n
288
PRO
288
A
TRP
289
n
289
TRP
289
A
MET
290
n
290
MET
290
A
GLN
291
n
291
GLN
291
A
ASP
292
n
292
ASP
292
A
VAL
293
n
293
VAL
293
A
LEU
294
n
294
LEU
294
A
LEU
295
n
295
LEU
295
A
PRO
296
n
296
PRO
296
A
GLN
297
n
297
GLN
297
A
GLU
298
n
298
GLU
298
A
THR
299
n
299
THR
299
A
ALA
300
n
300
ALA
300
A
GLU
301
n
301
GLU
301
A
ILE
302
n
302
ILE
302
A
HIS
303
n
303
HIS
303
A
LEU
304
n
304
LEU
304
A
HIS
305
n
305
HIS
305
A
n
306
306
A
n
307
307
A
n
308
308
A
n
309
309
A
n
310
310
A
n
311
311
A
n
312
312
A
n
313
313
A
2.7600
-0.8988
0.2301
1.6737
-0.4135
1.4441
0.1380
-0.0072
0.0194
0.0266
-0.0418
0.1725
-0.1314
-0.1181
-0.0962
-0.1495
-0.0136
0.0315
-0.1312
-0.0264
-0.1779
refined
-8.4154
-41.1154
-2.1364
X-RAY DIFFRACTION
A
33
A
33
A
305
A
305
X-RAY DIFFRACTION
1
A
1001
C
1
A
1001
C
1
X-RAY DIFFRACTION
1
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLY
41
A
N
GLY
41
A
O
SER
54
A
O
SER
54
A
N
TYR
53
A
N
TYR
53
A
O
ILE
66
A
O
ILE
66
A
N
ALA
65
A
N
ALA
65
A
O
LEU
120
A
O
LEU
120
A
O
ILE
119
A
O
ILE
119
A
N
ASP
108
A
N
ASP
108
A
N
GLY
78
A
N
GLY
78
A
O
VAL
86
A
O
VAL
86
A
N
GLN
127
A
N
GLN
127
A
O
ILE
175
A
O
ILE
175
A
N
ASP
176
A
N
ASP
176
A
O
GLU
181
A
O
GLU
181
A
N
LEU
164
A
N
LEU
164
A
O
ALA
191
A
O
ALA
191
1
A
CG
GLU
243
A
CG
GLU
243
1
Y
1
A
CD
GLU
243
A
CD
GLU
243
1
Y
1
A
OE1
GLU
243
A
OE1
GLU
243
1
Y
1
A
OE2
GLU
243
A
OE2
GLU
243
1
Y
1
A
CB
ARG
250
A
CB
ARG
250
1
Y
1
A
CG
ARG
250
A
CG
ARG
250
1
Y
1
A
CD
ARG
250
A
CD
ARG
250
1
Y
1
A
NE
ARG
250
A
NE
ARG
250
1
Y
1
A
CZ
ARG
250
A
CZ
ARG
250
1
Y
1
A
NH1
ARG
250
A
NH1
ARG
250
1
Y
1
A
NH2
ARG
250
A
NH2
ARG
250
1
Y
1
A
MET
1
A
MET
1
1
Y
1
A
LEU
2
A
LEU
2
1
Y
1
A
LEU
3
A
LEU
3
1
Y
1
A
SER
4
A
SER
4
1
Y
1
A
LYS
5
A
LYS
5
1
Y
1
A
ILE
6
A
ILE
6
1
Y
1
A
ASN
7
A
ASN
7
1
Y
1
A
SER
8
A
SER
8
1
Y
1
A
LEU
9
A
LEU
9
1
Y
1
A
ALA
10
A
ALA
10
1
Y
1
A
HIS
11
A
HIS
11
1
Y
1
A
LEU
12
A
LEU
12
1
Y
1
A
ARG
13
A
ARG
13
1
Y
1
A
ALA
14
A
ALA
14
1
Y
1
A
ALA
15
A
ALA
15
1
Y
1
A
PRO
16
A
PRO
16
1
Y
1
A
CYS
17
A
CYS
17
1
Y
1
A
ASN
18
A
ASN
18
1
Y
1
A
ASP
19
A
ASP
19
1
Y
1
A
LEU
20
A
LEU
20
1
Y
1
A
HIS
21
A
HIS
21
1
Y
1
A
ALA
22
A
ALA
22
1
Y
1
A
THR
23
A
THR
23
1
Y
1
A
LYS
24
A
LYS
24
1
Y
1
A
LEU
25
A
LEU
25
1
Y
1
A
ALA
26
A
ALA
26
1
Y
1
A
PRO
27
A
PRO
27
1
Y
1
A
GLY
28
A
GLY
28
1
Y
1
A
LYS
29
A
LYS
29
1
Y
1
A
GLU
30
A
GLU
30
1
Y
1
A
LYS
31
A
LYS
31
1
Y
1
A
GLU
32
A
GLU
32
1
Y
1
A
SER
306
A
SER
306
1
Y
1
A
LEU
307
A
LEU
307
1
Y
1
A
SER
308
A
SER
308
1
Y
1
A
PRO
309
A
PRO
309
1
Y
1
A
GLY
310
A
GLY
310
1
Y
1
A
PRO
311
A
PRO
311
1
Y
1
A
SER
312
A
SER
312
1
Y
1
A
LYS
313
A
LYS
313
1
Y
1
A
A
O
O
HOH
HOH
2029
2204
1.96
1
A
A
OE2
O
GLU
HOH
262
2216
2.09
B
1
A
ASP
60
-144.12
13.68
1
A
ASP
167
-143.40
47.05
1
A
ASP
186
66.18
81.14
36.881
0.01
0.01
0.00
0.01
0.00
-0.02
0.969
0.954
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.21336
0.17999
0.18164
0.18164
1.80
58.67
2136
47251
39589
5.1
58.67
4.944
0.077
RANDOM
LIKELY RESIDUAL
1
THROUGHOUT
0
0
MOLECULAR REPLACEMENT
0.096
0.098
0.80
0.80
1.20
MAXIMUM LIKELIHOOD
MASK
1.80
58.67
242
2491
36
0
2213
0.018
0.021
2331
1.914
1.969
3169
5.769
5.000
272
34.600
23.136
118
13.182
15.000
384
18.091
15.000
21
0.112
0.200
335
0.007
0.020
1805
0.201
0.200
1025
0.306
0.200
1559
0.160
0.200
206
0.108
0.200
31
0.173
0.200
22
1.026
1.500
1405
1.648
2.000
2209
2.586
3.000
1078
4.094
4.500
960
0.322
0.28
1.847
168
2909
20
99.26
30.1
1.8
86.07
1XWS
41697
41578
0
0
0.068
0.068
1
18.4
6.3
99.5
0.781
1.8
1.9
1.5
5939
0.781
1
4.1
98.2
refinement
REFMAC
5.2.0005
data reduction
CrystalClear
(MSC/RIGAKU)
data scaling
CrystalClear
(MSC/RIGAKU)
phasing
PHASER
Crystal Structure of the human PIM1 kinase domain
1
N
N
2
N
N
3
N
N
4
N
N
A
ASP
72
A
ASP
72
HELX_P
A
ILE
74
A
ILE
74
5
1
3
A
MET
88
A
MET
88
HELX_P
A
SER
97
A
SER
97
1
2
10
A
LEU
129
A
LEU
129
HELX_P
A
GLY
137
A
GLY
137
1
3
9
A
GLN
140
A
GLN
140
HELX_P
A
CYS
161
A
CYS
161
1
4
22
A
LYS
169
A
LYS
169
HELX_P
A
GLU
171
A
GLU
171
5
5
3
A
THR
204
A
THR
204
HELX_P
A
SER
208
A
SER
208
5
6
5
A
PRO
209
A
PRO
209
HELX_P
A
HIS
216
A
HIS
216
1
7
8
A
HIS
219
A
HIS
219
HELX_P
A
GLY
238
A
GLY
238
1
8
20
A
HIS
244
A
HIS
244
HELX_P
A
GLY
251
A
GLY
251
1
9
8
A
SER
260
A
SER
260
HELX_P
A
LEU
271
A
LEU
271
1
10
12
A
ARG
274
A
ARG
274
HELX_P
A
ARG
278
A
ARG
278
5
11
5
A
THR
280
A
THR
280
HELX_P
A
ASN
286
A
ASN
286
1
12
7
A
HIS
287
A
HIS
287
HELX_P
A
GLN
291
A
GLN
291
5
13
5
A
LEU
295
A
LEU
295
HELX_P
A
LEU
304
A
LEU
304
1
14
10
TRANSFERASE
PIM1, kinase, cancer, leukemia, TRANSFERASE
A
GLU
124
A
GLU
124
1
A
PRO
125
A
PRO
125
-7.86
PIM1_HUMAN
UNP
1
1
P11309
MLLSKINSLAHLRAAPCNDLHATKLAPGKEKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGEL
PNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHN
CGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDI
PFEHDEEIIRGQVFFRQRVSSECQHLIRWCLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLHSLSPGPSK
1
313
1XWS
1
313
P11309
A
1
1
313
5
2
3
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
TYR
38
A
TYR
38
A
GLY
47
A
GLY
47
A
GLY
50
A
GLY
50
A
ARG
57
A
ARG
57
A
PRO
63
A
PRO
63
A
GLU
70
A
GLU
70
A
SER
115
A
SER
115
A
GLU
121
A
GLU
121
A
LEU
106
A
LEU
106
A
GLU
111
A
GLU
111
A
TRP
77
A
TRP
77
A
GLU
79
A
GLU
79
A
ARG
85
A
ARG
85
A
PRO
87
A
PRO
87
A
VAL
126
A
VAL
126
A
ASP
128
A
ASP
128
A
ILE
173
A
ILE
173
A
ASP
176
A
ASP
176
A
GLU
181
A
GLU
181
A
LEU
184
A
LEU
184
A
VAL
163
A
VAL
163
A
LEU
164
A
LEU
164
A
ALA
191
A
ALA
191
A
LEU
192
A
LEU
192
BINDING SITE FOR RESIDUE SO4 A 2001
A
SO4
2001
Software
7
BINDING SITE FOR RESIDUE BI1 A 1001
A
BI1
1001
Software
15
A
ARG
156
A
ARG
156
7
3_545
A
ARG
258
A
ARG
258
7
1_555
A
SER
261
A
SER
261
7
1_555
A
PHE
281
A
PHE
281
7
3_545
A
HOH
2011
D
HOH
7
3_545
A
HOH
2053
D
HOH
7
1_555
A
HOH
2087
D
HOH
7
3_545
A
LEU
44
A
LEU
44
15
1_555
A
GLY
45
A
GLY
45
15
1_555
A
PHE
49
A
PHE
49
15
1_555
A
ALA
65
A
ALA
65
15
1_555
A
LYS
67
A
LYS
67
15
1_555
A
GLU
89
A
GLU
89
15
1_555
A
ILE
104
A
ILE
104
15
1_555
A
LEU
120
A
LEU
120
15
1_555
A
GLU
121
A
GLU
121
15
1_555
A
ARG
122
A
ARG
122
15
1_555
A
GLU
171
A
GLU
171
15
1_555
A
LEU
174
A
LEU
174
15
1_555
A
ILE
185
A
ILE
185
15
1_555
A
ASP
186
A
ASP
186
15
1_555
A
HOH
2099
D
HOH
15
1_555
170
P 65