0.018253
0.010538
0.000000
0.000000
0.021077
0.000000
0.000000
0.000000
0.009205
0.000000
0.000000
0.000000
Di Fenza, A.
Heine, A.
Klebe, G.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
54.786
54.786
108.633
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Ca 2
40.078
CALCIUM ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C3 H5 N2 1
69.085
IMIDAZOLE
non-polymer
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C4 H10 O3
106.120
DI(HYDROXYETHYL)ETHER
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C20 H22 N4 O4
382.413
2-O-{3-[AMINO(IMINO)METHYL]PHENYL}-5-O-{4-[AMINO(IMINO)METHYL]PHENYL}-1,4:3,6-DIANHYDRO-D-GLUCITOL
2-O-(3'-AMIDINOPHENYL)-5-O-(4''-AMIDINOPHENYL}-1,4:3,6-DIANHYDRO-D-SORBITOL
non-polymer
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
DE
Chemmedchem
1860-7179
2
297
308
10.1002/cmdc.200600185
17191291
Understanding binding selectivity toward trypsin and factor Xa: the role of aromatic interactions
2007
10.2210/pdb1y5u/pdb
pdb_00001y5u
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
103.15
1
silicon mirrors, double silicon crystal
CCD
2004-05-28
MARRESEARCH
Si-111 crystal
SINGLE WAVELENGTH
M
x-ray
1
0.91838
1.0
14.1
BESSY
0.91838
SYNCHROTRON
BESSY BEAMLINE 14.1
23389.316
Trypsin, cationic
3.4.21.4
N97E, L99Y
1
man
polymer
40.078
CALCIUM ION
1
syn
non-polymer
96.063
SULFATE ION
2
syn
non-polymer
382.413
2-O-{3-[AMINO(IMINO)METHYL]PHENYL}-5-O-{4-[AMINO(IMINO)METHYL]PHENYL}-1,4:3,6-DIANHYDRO-D-GLUCITOL
1
syn
non-polymer
69.085
IMIDAZOLE
1
syn
non-polymer
92.094
GLYCEROL
1
syn
non-polymer
106.120
DI(HYDROXYETHYL)ETHER
1
syn
non-polymer
18.015
water
227
nat
water
Beta-trypsin
no
no
IVGGYTCGANTVPYQVSLNSGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSET
YNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNM
FCAGYLEGGKDSCQGDSGGPVVCSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIASN
IVGGYTCGANTVPYQVSLNSGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSET
YNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNM
FCAGYLEGGKDSCQGDSGGPVVCSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIASN
T
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
bovine
Escherichia
sample
9913
Bos taurus
562
Escherichia coli
plasmid
pET3A
1
2.01
38.88
VAPOR DIFFUSION, HANGING DROP
7.0
PEG 8000, Imidazole, Ammonium sulfate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293.15K
293.15
software
database_2
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Non-polymer description
Version format compliance
Refinement description
Database references
Derived calculations
1
0
2005-12-13
1
1
2008-04-30
1
2
2011-07-13
1
3
2017-10-11
1
4
2021-11-10
_software.classification
_software.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
the same protein complexed with a related inhibitor, at 1.20A resolution
the same protein complexed with a related inhibitor, at 1.40A resolution
the same protein complexed with a related inhibitor, at 1.65A resolution
RCSB
Y
PDBJ
2004-12-03
REL
REL
CA
CALCIUM ION
SO4
SULFATE ION
TL4
2-O-{3-[AMINO(IMINO)METHYL]PHENYL}-5-O-{4-[AMINO(IMINO)METHYL]PHENYL}-1,4:3,6-DIANHYDRO-D-GLUCITOL
IMD
IMIDAZOLE
GOL
GLYCEROL
PEG
DI(HYDROXYETHYL)ETHER
HOH
water
CA
9
2
CA
CA
9
T
SO4
3022
3
SO4
SO4
3022
T
SO4
3023
3
SO4
SO4
3023
T
DHH
360
4
TL4
TL4
360
T
IMD
12
5
IMD
IMD
12
T
GOL
2010
6
GOL
GOL
2010
T
PEG
501
7
PEG
PEG
501
T
HOH
9001
8
HOH
HOH
9001
T
HOH
9002
8
HOH
HOH
9002
T
HOH
9003
8
HOH
HOH
9003
T
HOH
9004
8
HOH
HOH
9004
T
HOH
9005
8
HOH
HOH
9005
T
HOH
9006
8
HOH
HOH
9006
T
HOH
9007
8
HOH
HOH
9007
T
HOH
9008
8
HOH
HOH
9008
T
HOH
9009
8
HOH
HOH
9009
T
HOH
9010
8
HOH
HOH
9010
T
HOH
9011
8
HOH
HOH
9011
T
HOH
9012
8
HOH
HOH
9012
T
HOH
9013
8
HOH
HOH
9013
T
HOH
9014
8
HOH
HOH
9014
T
HOH
9015
8
HOH
HOH
9015
T
HOH
9016
8
HOH
HOH
9016
T
HOH
9017
8
HOH
HOH
9017
T
HOH
9018
8
HOH
HOH
9018
T
HOH
9019
8
HOH
HOH
9019
T
HOH
9020
8
HOH
HOH
9020
T
HOH
9021
8
HOH
HOH
9021
T
HOH
9022
8
HOH
HOH
9022
T
HOH
9023
8
HOH
HOH
9023
T
HOH
9024
8
HOH
HOH
9024
T
HOH
9025
8
HOH
HOH
9025
T
HOH
9026
8
HOH
HOH
9026
T
HOH
9027
8
HOH
HOH
9027
T
HOH
9028
8
HOH
HOH
9028
T
HOH
9029
8
HOH
HOH
9029
T
HOH
9030
8
HOH
HOH
9030
T
HOH
9031
8
HOH
HOH
9031
T
HOH
9032
8
HOH
HOH
9032
T
HOH
9033
8
HOH
HOH
9033
T
HOH
9034
8
HOH
HOH
9034
T
HOH
9035
8
HOH
HOH
9035
T
HOH
9036
8
HOH
HOH
9036
T
HOH
9037
8
HOH
HOH
9037
T
HOH
9038
8
HOH
HOH
9038
T
HOH
9039
8
HOH
HOH
9039
T
HOH
9040
8
HOH
HOH
9040
T
HOH
9041
8
HOH
HOH
9041
T
HOH
9042
8
HOH
HOH
9042
T
HOH
9043
8
HOH
HOH
9043
T
HOH
9044
8
HOH
HOH
9044
T
HOH
9045
8
HOH
HOH
9045
T
HOH
9046
8
HOH
HOH
9046
T
HOH
9047
8
HOH
HOH
9047
T
HOH
9048
8
HOH
HOH
9048
T
HOH
9049
8
HOH
HOH
9049
T
HOH
9050
8
HOH
HOH
9050
T
HOH
9051
8
HOH
HOH
9051
T
HOH
9052
8
HOH
HOH
9052
T
HOH
9053
8
HOH
HOH
9053
T
HOH
9054
8
HOH
HOH
9054
T
HOH
9055
8
HOH
HOH
9055
T
HOH
9056
8
HOH
HOH
9056
T
HOH
9057
8
HOH
HOH
9057
T
HOH
9058
8
HOH
HOH
9058
T
HOH
9059
8
HOH
HOH
9059
T
HOH
9060
8
HOH
HOH
9060
T
HOH
9061
8
HOH
HOH
9061
T
HOH
9062
8
HOH
HOH
9062
T
HOH
9063
8
HOH
HOH
9063
T
HOH
9064
8
HOH
HOH
9064
T
HOH
9065
8
HOH
HOH
9065
T
HOH
9066
8
HOH
HOH
9066
T
HOH
9067
8
HOH
HOH
9067
T
HOH
9068
8
HOH
HOH
9068
T
HOH
9069
8
HOH
HOH
9069
T
HOH
9070
8
HOH
HOH
9070
T
HOH
9071
8
HOH
HOH
9071
T
HOH
9072
8
HOH
HOH
9072
T
HOH
9073
8
HOH
HOH
9073
T
HOH
9074
8
HOH
HOH
9074
T
HOH
9075
8
HOH
HOH
9075
T
HOH
9076
8
HOH
HOH
9076
T
HOH
9077
8
HOH
HOH
9077
T
HOH
9078
8
HOH
HOH
9078
T
HOH
9079
8
HOH
HOH
9079
T
HOH
9080
8
HOH
HOH
9080
T
HOH
9081
8
HOH
HOH
9081
T
HOH
9082
8
HOH
HOH
9082
T
HOH
9083
8
HOH
HOH
9083
T
HOH
9084
8
HOH
HOH
9084
T
HOH
9085
8
HOH
HOH
9085
T
HOH
9086
8
HOH
HOH
9086
T
HOH
9087
8
HOH
HOH
9087
T
HOH
9088
8
HOH
HOH
9088
T
HOH
9089
8
HOH
HOH
9089
T
HOH
9090
8
HOH
HOH
9090
T
HOH
9091
8
HOH
HOH
9091
T
HOH
9092
8
HOH
HOH
9092
T
HOH
9093
8
HOH
HOH
9093
T
HOH
9094
8
HOH
HOH
9094
T
HOH
9095
8
HOH
HOH
9095
T
HOH
9096
8
HOH
HOH
9096
T
HOH
9097
8
HOH
HOH
9097
T
HOH
9098
8
HOH
HOH
9098
T
HOH
9099
8
HOH
HOH
9099
T
HOH
9100
8
HOH
HOH
9100
T
HOH
9101
8
HOH
HOH
9101
T
HOH
9102
8
HOH
HOH
9102
T
HOH
9103
8
HOH
HOH
9103
T
HOH
9104
8
HOH
HOH
9104
T
HOH
9105
8
HOH
HOH
9105
T
HOH
9106
8
HOH
HOH
9106
T
HOH
9107
8
HOH
HOH
9107
T
HOH
9108
8
HOH
HOH
9108
T
HOH
9109
8
HOH
HOH
9109
T
HOH
9110
8
HOH
HOH
9110
T
HOH
9111
8
HOH
HOH
9111
T
HOH
9112
8
HOH
HOH
9112
T
HOH
9113
8
HOH
HOH
9113
T
HOH
9114
8
HOH
HOH
9114
T
HOH
9115
8
HOH
HOH
9115
T
HOH
9116
8
HOH
HOH
9116
T
HOH
9117
8
HOH
HOH
9117
T
HOH
9118
8
HOH
HOH
9118
T
HOH
9119
8
HOH
HOH
9119
T
HOH
9120
8
HOH
HOH
9120
T
HOH
9121
8
HOH
HOH
9121
T
HOH
9122
8
HOH
HOH
9122
T
HOH
9123
8
HOH
HOH
9123
T
HOH
9124
8
HOH
HOH
9124
T
HOH
9125
8
HOH
HOH
9125
T
HOH
9126
8
HOH
HOH
9126
T
HOH
9127
8
HOH
HOH
9127
T
HOH
9128
8
HOH
HOH
9128
T
HOH
9129
8
HOH
HOH
9129
T
HOH
9130
8
HOH
HOH
9130
T
HOH
9131
8
HOH
HOH
9131
T
HOH
9132
8
HOH
HOH
9132
T
HOH
9133
8
HOH
HOH
9133
T
HOH
9134
8
HOH
HOH
9134
T
HOH
9135
8
HOH
HOH
9135
T
HOH
9136
8
HOH
HOH
9136
T
HOH
9137
8
HOH
HOH
9137
T
HOH
9138
8
HOH
HOH
9138
T
HOH
9139
8
HOH
HOH
9139
T
HOH
9140
8
HOH
HOH
9140
T
HOH
9141
8
HOH
HOH
9141
T
HOH
9142
8
HOH
HOH
9142
T
HOH
9143
8
HOH
HOH
9143
T
HOH
9144
8
HOH
HOH
9144
T
HOH
9145
8
HOH
HOH
9145
T
HOH
9146
8
HOH
HOH
9146
T
HOH
9147
8
HOH
HOH
9147
T
HOH
9148
8
HOH
HOH
9148
T
HOH
9149
8
HOH
HOH
9149
T
HOH
9150
8
HOH
HOH
9150
T
HOH
9151
8
HOH
HOH
9151
T
HOH
9152
8
HOH
HOH
9152
T
HOH
9153
8
HOH
HOH
9153
T
HOH
9154
8
HOH
HOH
9154
T
HOH
9155
8
HOH
HOH
9155
T
HOH
9156
8
HOH
HOH
9156
T
HOH
9157
8
HOH
HOH
9157
T
HOH
9158
8
HOH
HOH
9158
T
HOH
9159
8
HOH
HOH
9159
T
HOH
9160
8
HOH
HOH
9160
T
HOH
9161
8
HOH
HOH
9161
T
HOH
9162
8
HOH
HOH
9162
T
HOH
9163
8
HOH
HOH
9163
T
HOH
9165
8
HOH
HOH
9165
T
HOH
9166
8
HOH
HOH
9166
T
HOH
9167
8
HOH
HOH
9167
T
HOH
9168
8
HOH
HOH
9168
T
HOH
9169
8
HOH
HOH
9169
T
HOH
9170
8
HOH
HOH
9170
T
HOH
9171
8
HOH
HOH
9171
T
HOH
9172
8
HOH
HOH
9172
T
HOH
9173
8
HOH
HOH
9173
T
HOH
9174
8
HOH
HOH
9174
T
HOH
9175
8
HOH
HOH
9175
T
HOH
9176
8
HOH
HOH
9176
T
HOH
9177
8
HOH
HOH
9177
T
HOH
9178
8
HOH
HOH
9178
T
HOH
9179
8
HOH
HOH
9179
T
HOH
9180
8
HOH
HOH
9180
T
HOH
9181
8
HOH
HOH
9181
T
HOH
9182
8
HOH
HOH
9182
T
HOH
9183
8
HOH
HOH
9183
T
HOH
9184
8
HOH
HOH
9184
T
HOH
9185
8
HOH
HOH
9185
T
HOH
9186
8
HOH
HOH
9186
T
HOH
9187
8
HOH
HOH
9187
T
HOH
9188
8
HOH
HOH
9188
T
HOH
9189
8
HOH
HOH
9189
T
HOH
9190
8
HOH
HOH
9190
T
HOH
9192
8
HOH
HOH
9192
T
HOH
9193
8
HOH
HOH
9193
T
HOH
9194
8
HOH
HOH
9194
T
HOH
9195
8
HOH
HOH
9195
T
HOH
9196
8
HOH
HOH
9196
T
HOH
9197
8
HOH
HOH
9197
T
HOH
9198
8
HOH
HOH
9198
T
HOH
9200
8
HOH
HOH
9200
T
HOH
9201
8
HOH
HOH
9201
T
HOH
9203
8
HOH
HOH
9203
T
HOH
9204
8
HOH
HOH
9204
T
HOH
9205
8
HOH
HOH
9205
T
HOH
9206
8
HOH
HOH
9206
T
HOH
9208
8
HOH
HOH
9208
T
HOH
9209
8
HOH
HOH
9209
T
HOH
9210
8
HOH
HOH
9210
T
HOH
9211
8
HOH
HOH
9211
T
HOH
9213
8
HOH
HOH
9213
T
HOH
9214
8
HOH
HOH
9214
T
HOH
9215
8
HOH
HOH
9215
T
HOH
9216
8
HOH
HOH
9216
T
HOH
9217
8
HOH
HOH
9217
T
HOH
9218
8
HOH
HOH
9218
T
HOH
9219
8
HOH
HOH
9219
T
HOH
9220
8
HOH
HOH
9220
T
HOH
9221
8
HOH
HOH
9221
T
HOH
9222
8
HOH
HOH
9222
T
HOH
9226
8
HOH
HOH
9226
T
HOH
9228
8
HOH
HOH
9228
T
HOH
9229
8
HOH
HOH
9229
T
HOH
9235
8
HOH
HOH
9235
T
HOH
9237
8
HOH
HOH
9237
T
HOH
9238
8
HOH
HOH
9238
T
HOH
9251
8
HOH
HOH
9251
T
HOH
9253
8
HOH
HOH
9253
T
HOH
9257
8
HOH
HOH
9257
T
HOH
9258
8
HOH
HOH
9258
T
HOH
9260
8
HOH
HOH
9260
T
ILE
16
n
1
ILE
16
T
VAL
17
n
2
VAL
17
T
GLY
18
n
3
GLY
18
T
GLY
19
n
4
GLY
19
T
TYR
20
n
5
TYR
20
T
THR
21
n
6
THR
21
T
CYS
22
n
7
CYS
22
T
GLY
23
n
8
GLY
23
T
ALA
24
n
9
ALA
24
T
ASN
25
n
10
ASN
25
T
THR
26
n
11
THR
26
T
VAL
27
n
12
VAL
27
T
PRO
28
n
13
PRO
28
T
TYR
29
n
14
TYR
29
T
GLN
30
n
15
GLN
30
T
VAL
31
n
16
VAL
31
T
SER
32
n
17
SER
32
T
LEU
33
n
18
LEU
33
T
ASN
34
n
19
ASN
34
T
SER
37
n
20
SER
37
T
GLY
38
n
21
GLY
38
T
TYR
39
n
22
TYR
39
T
HIS
40
n
23
HIS
40
T
PHE
41
n
24
PHE
41
T
CYS
42
n
25
CYS
42
T
GLY
43
n
26
GLY
43
T
GLY
44
n
27
GLY
44
T
SER
45
n
28
SER
45
T
LEU
46
n
29
LEU
46
T
ILE
47
n
30
ILE
47
T
ASN
48
n
31
ASN
48
T
SER
49
n
32
SER
49
T
GLN
50
n
33
GLN
50
T
TRP
51
n
34
TRP
51
T
VAL
52
n
35
VAL
52
T
VAL
53
n
36
VAL
53
T
SER
54
n
37
SER
54
T
ALA
55
n
38
ALA
55
T
ALA
56
n
39
ALA
56
T
HIS
57
n
40
HIS
57
T
CYS
58
n
41
CYS
58
T
TYR
59
n
42
TYR
59
T
LYS
60
n
43
LYS
60
T
SER
61
n
44
SER
61
T
GLY
62
n
45
GLY
62
T
ILE
63
n
46
ILE
63
T
GLN
64
n
47
GLN
64
T
VAL
65
n
48
VAL
65
T
ARG
66
n
49
ARG
66
T
LEU
67
n
50
LEU
67
T
GLY
69
n
51
GLY
69
T
GLU
70
n
52
GLU
70
T
ASP
71
n
53
ASP
71
T
ASN
72
n
54
ASN
72
T
ILE
73
n
55
ILE
73
T
ASN
74
n
56
ASN
74
T
VAL
75
n
57
VAL
75
T
VAL
76
n
58
VAL
76
T
GLU
77
n
59
GLU
77
T
GLY
78
n
60
GLY
78
T
ASN
79
n
61
ASN
79
T
GLU
80
n
62
GLU
80
T
GLN
81
n
63
GLN
81
T
PHE
82
n
64
PHE
82
T
ILE
83
n
65
ILE
83
T
SER
84
n
66
SER
84
T
ALA
85
n
67
ALA
85
T
SER
86
n
68
SER
86
T
LYS
87
n
69
LYS
87
T
SER
88
n
70
SER
88
T
ILE
89
n
71
ILE
89
T
VAL
90
n
72
VAL
90
T
HIS
91
n
73
HIS
91
T
PRO
92
n
74
PRO
92
T
SER
93
n
75
SER
93
T
TYR
94
n
76
TYR
94
T
ASN
95
n
77
ASN
95
T
SER
96
n
78
SER
96
T
GLU
97
n
79
GLU
97
T
THR
98
n
80
THR
98
T
TYR
99
n
81
TYR
99
T
ASN
100
n
82
ASN
100
T
ASN
101
n
83
ASN
101
T
ASP
102
n
84
ASP
102
T
ILE
103
n
85
ILE
103
T
MET
104
n
86
MET
104
T
LEU
105
n
87
LEU
105
T
ILE
106
n
88
ILE
106
T
LYS
107
n
89
LYS
107
T
LEU
108
n
90
LEU
108
T
ALA
109
n
91
LYS
109
T
SER
110
n
92
SER
110
T
ALA
111
n
93
ALA
111
T
ALA
112
n
94
ALA
112
T
SER
113
n
95
SER
113
T
LEU
114
n
96
LEU
114
T
ASN
115
n
97
ASN
115
T
SER
116
n
98
SER
116
T
ARG
117
n
99
ARG
117
T
VAL
118
n
100
VAL
118
T
ALA
119
n
101
ALA
119
T
SER
120
n
102
SER
120
T
ILE
121
n
103
ILE
121
T
SER
122
n
104
SER
122
T
LEU
123
n
105
LEU
123
T
PRO
124
n
106
PRO
124
T
THR
125
n
107
THR
125
T
SER
127
n
108
SER
127
T
CYS
128
n
109
CYS
128
T
ALA
129
n
110
ALA
129
T
SER
130
n
111
SER
130
T
ALA
132
n
112
ALA
132
T
GLY
133
n
113
GLY
133
T
THR
134
n
114
THR
134
T
GLN
135
n
115
GLN
135
T
CYS
136
n
116
CYS
136
T
LEU
137
n
117
LEU
137
T
ILE
138
n
118
ILE
138
T
SER
139
n
119
SER
139
T
GLY
140
n
120
GLY
140
T
TRP
141
n
121
TRP
141
T
GLY
142
n
122
GLY
142
T
ASN
143
n
123
ASN
143
T
THR
144
n
124
THR
144
T
ALA
145
n
125
LYS
145
T
SER
146
n
126
SER
146
T
SER
147
n
127
SER
147
T
GLY
148
n
128
GLY
148
T
THR
149
n
129
THR
149
T
SER
150
n
130
SER
150
T
TYR
151
n
131
TYR
151
T
PRO
152
n
132
PRO
152
T
ASP
153
n
133
ASP
153
T
VAL
154
n
134
VAL
154
T
LEU
155
n
135
LEU
155
T
LYS
156
n
136
LYS
156
T
CYS
157
n
137
CYS
157
T
LEU
158
n
138
LEU
158
T
LYS
159
n
139
LYS
159
T
ALA
160
n
140
ALA
160
T
PRO
161
n
141
PRO
161
T
ILE
162
n
142
ILE
162
T
LEU
163
n
143
LEU
163
T
SER
164
n
144
SER
164
T
ASP
165
n
145
ASP
165
T
SER
166
n
146
SER
166
T
SER
167
n
147
SER
167
T
CYS
168
n
148
CYS
168
T
LYS
169
n
149
LYS
169
T
SER
170
n
150
SER
170
T
ALA
171
n
151
ALA
171
T
TYR
172
n
152
TYR
172
T
PRO
173
n
153
PRO
173
T
GLY
174
n
154
GLY
174
T
GLN
175
n
155
GLN
175
T
ILE
176
n
156
ILE
176
T
THR
177
n
157
THR
177
T
SER
178
n
158
SER
178
T
ASN
179
n
159
ASN
179
T
MET
180
n
160
MET
180
T
PHE
181
n
161
PHE
181
T
CYS
182
n
162
CYS
182
T
ALA
183
n
163
ALA
183
T
GLY
184
n
164
GLY
184
T
TYR
184
n
165
A
TYR
184
T
LEU
185
n
166
LEU
185
T
ALA
186
n
167
GLU
186
T
GLY
187
n
168
GLY
187
T
GLY
188
n
169
GLY
188
T
LYS
188
n
170
A
LYS
188
T
ASP
189
n
171
ASP
189
T
SER
190
n
172
SER
190
T
CYS
191
n
173
CYS
191
T
GLN
192
n
174
GLN
192
T
GLY
193
n
175
GLY
193
T
ASP
194
n
176
ASP
194
T
SER
195
n
177
SER
195
T
GLY
196
n
178
GLY
196
T
GLY
197
n
179
GLY
197
T
PRO
198
n
180
PRO
198
T
VAL
199
n
181
VAL
199
T
VAL
200
n
182
VAL
200
T
CYS
201
n
183
CYS
201
T
SER
202
n
184
SER
202
T
GLY
203
n
185
GLY
203
T
LYS
204
n
186
LYS
204
T
LEU
209
n
187
LEU
209
T
GLN
210
n
188
GLN
210
T
GLY
211
n
189
GLY
211
T
ILE
212
n
190
ILE
212
T
VAL
213
n
191
VAL
213
T
SER
214
n
192
SER
214
T
TRP
215
n
193
TRP
215
T
GLY
216
n
194
GLY
216
T
SER
217
n
195
SER
217
T
GLY
219
n
196
GLY
219
T
CYS
220
n
197
CYS
220
T
ALA
221
n
198
ALA
221
T
GLN
221
n
199
A
GLN
221
T
LYS
222
n
200
LYS
222
T
ASN
223
n
201
ASN
223
T
LYS
224
n
202
LYS
224
T
PRO
225
n
203
PRO
225
T
GLY
226
n
204
GLY
226
T
VAL
227
n
205
VAL
227
T
TYR
228
n
206
TYR
228
T
THR
229
n
207
THR
229
T
LYS
230
n
208
LYS
230
T
VAL
231
n
209
VAL
231
T
CYS
232
n
210
CYS
232
T
ASN
233
n
211
ASN
233
T
TYR
234
n
212
TYR
234
T
VAL
235
n
213
VAL
235
T
SER
236
n
214
SER
236
T
TRP
237
n
215
TRP
237
T
ILE
238
n
216
ILE
238
T
LYS
239
n
217
LYS
239
T
GLN
240
n
218
GLN
240
T
THR
241
n
219
THR
241
T
ILE
242
n
220
ILE
242
T
ALA
243
n
221
ALA
243
T
SER
244
n
222
SER
244
T
ASN
245
n
223
ASN
245
T
0.1425
0.1573
17606
author_and_software_defined_assembly
PISA
1
monomeric
T
GLU
70
A
OE1
GLU
52
1_555
T
CA
9
B
CA
CA
1_555
T
ASN
72
A
O
ASN
54
1_555
89.0
T
GLU
70
A
OE1
GLU
52
1_555
T
CA
9
B
CA
CA
1_555
T
VAL
75
A
O
VAL
57
1_555
166.2
T
ASN
72
A
O
ASN
54
1_555
T
CA
9
B
CA
CA
1_555
T
VAL
75
A
O
VAL
57
1_555
81.2
T
GLU
70
A
OE1
GLU
52
1_555
T
CA
9
B
CA
CA
1_555
T
GLU
80
A
OE2
GLU
62
1_555
103.8
T
ASN
72
A
O
ASN
54
1_555
T
CA
9
B
CA
CA
1_555
T
GLU
80
A
OE2
GLU
62
1_555
157.8
T
VAL
75
A
O
VAL
57
1_555
T
CA
9
B
CA
CA
1_555
T
GLU
80
A
OE2
GLU
62
1_555
88.7
T
GLU
70
A
OE1
GLU
52
1_555
T
CA
9
B
CA
CA
1_555
T
HOH
9200
I
O
HOH
1_555
81.3
T
ASN
72
A
O
ASN
54
1_555
T
CA
9
B
CA
CA
1_555
T
HOH
9200
I
O
HOH
1_555
101.5
T
VAL
75
A
O
VAL
57
1_555
T
CA
9
B
CA
CA
1_555
T
HOH
9200
I
O
HOH
1_555
91.1
T
GLU
80
A
OE2
GLU
62
1_555
T
CA
9
B
CA
CA
1_555
T
HOH
9200
I
O
HOH
1_555
98.4
T
GLU
70
A
OE1
GLU
52
1_555
T
CA
9
B
CA
CA
1_555
T
HOH
9201
I
O
HOH
1_555
84.5
T
ASN
72
A
O
ASN
54
1_555
T
CA
9
B
CA
CA
1_555
T
HOH
9201
I
O
HOH
1_555
89.1
T
VAL
75
A
O
VAL
57
1_555
T
CA
9
B
CA
CA
1_555
T
HOH
9201
I
O
HOH
1_555
104.8
T
GLU
80
A
OE2
GLU
62
1_555
T
CA
9
B
CA
CA
1_555
T
HOH
9201
I
O
HOH
1_555
74.4
T
HOH
9200
I
O
HOH
1_555
T
CA
9
B
CA
CA
1_555
T
HOH
9201
I
O
HOH
1_555
162.1
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
T
N
TYR
20
A
N
TYR
5
T
O
CYS
157
A
O
CYS
137
T
O
LEU
158
A
O
LEU
138
T
N
ILE
138
A
N
ILE
118
T
N
LEU
137
A
N
LEU
117
T
O
VAL
200
A
O
VAL
182
T
N
CYS
201
A
N
CYS
183
T
O
LYS
204
A
O
LYS
186
T
N
TRP
215
A
N
TRP
193
T
O
VAL
227
A
O
VAL
205
T
O
TYR
228
A
O
TYR
206
T
N
PHE
181
A
N
PHE
161
T
N
LEU
33
A
N
LEU
18
T
O
CYS
42
A
O
CYS
25
T
N
SER
45
A
N
SER
28
T
O
VAL
53
A
O
VAL
36
T
N
VAL
52
A
N
VAL
35
T
O
ILE
106
A
O
ILE
88
T
O
LYS
107
A
O
LYS
89
T
N
SER
86
A
N
SER
68
T
O
ILE
83
A
O
ILE
65
T
N
VAL
65
A
N
VAL
48
T
O
GLN
64
A
O
GLN
47
T
N
ASN
34
A
N
ASN
19
1
T
HOH
9203
I
HOH
1
T
CG
LYS
109
A
CG
LYS
91
1
Y
1
T
CD
LYS
109
A
CD
LYS
91
1
Y
1
T
CE
LYS
109
A
CE
LYS
91
1
Y
1
T
NZ
LYS
109
A
NZ
LYS
91
1
Y
1
T
CG
LYS
145
A
CG
LYS
125
1
Y
1
T
CD
LYS
145
A
CD
LYS
125
1
Y
1
T
CE
LYS
145
A
CE
LYS
125
1
Y
1
T
NZ
LYS
145
A
NZ
LYS
125
1
Y
1
T
CG
GLU
186
A
CG
GLU
167
1
Y
1
T
CD
GLU
186
A
CD
GLU
167
1
Y
1
T
OE1
GLU
186
A
OE1
GLU
167
1
Y
1
T
OE2
GLU
186
A
OE2
GLU
167
1
Y
1
7.27
1.20
131.40
138.67
T
T
T
CB
CG
CD2
HIS
HIS
HIS
40
40
40
N
1
7.08
1.00
109.00
116.08
T
T
T
CG
ND1
CE1
HIS
HIS
HIS
40
40
40
N
1
-3.70
0.60
121.00
117.30
T
T
T
CB
CG
CD2
TYR
TYR
TYR
151
151
151
N
1
4.41
0.60
121.00
125.41
T
T
T
CB
CG
CD1
TYR
TYR
TYR
151
151
151
N
1
-3.70
0.60
121.00
117.30
T
T
T
CB
CG
CD2
TYR
TYR
TYR
228
228
228
N
1
T
ASP
71
-118.97
-78.87
ANISOTROPIC SCALING APPLIED BY THE METHOD OF PARKIN, MOEZZI & HOPE, J.APPL.CRYST.28(1995)53-56
0.215
0.1573
0.1601
0.1573
1.60
50.00
7861
2476
24867
24867
7053
RANDOM
1
FREE R
0.0
MOLECULAR REPLACEMENT
Engh & Huber
6
1570.79
1936.95
1.60
50.00
227
1906
57
0
1622
0.008
0.026
0.000
0.0286
0.043
0.045
0.020
0.000
0.061
0.000
1.60
50.0
1Y5U
46808
46808
0
0
0.052
1
18.17
2.6
97.2
1.60
1.63
1.94
2133
0.44
1
2.2
90.1
model building
SHELX
refinement
SHELXL-97
data collection
MAR345
345DTB
data scaling
HKL-2000
phasing
AMoRE
Dianhydrosugar-based benzamidine, factor Xa specific inhibitor in complex with bovine trypsin mutant
1
N
N
2
N
N
3
N
N
3
N
N
4
N
N
5
N
N
6
N
N
7
N
N
8
N
N
T
ALA
55
A
ALA
38
HELX_P
T
TYR
59
A
TYR
42
5
1
5
T
SER
164
A
SER
144
HELX_P
T
TYR
172
A
TYR
152
1
2
9
T
TYR
234
A
TYR
212
HELX_P
T
SER
244
A
SER
222
1
3
11
disulf
2.061
T
CYS
22
A
SG
CYS
7
1_555
T
CYS
157
A
SG
CYS
137
1_555
disulf
2.042
T
CYS
42
A
SG
CYS
25
1_555
T
CYS
58
A
SG
CYS
41
1_555
disulf
2.050
T
CYS
128
A
SG
CYS
109
1_555
T
CYS
232
A
SG
CYS
210
1_555
disulf
2.006
T
CYS
136
A
SG
CYS
116
1_555
T
CYS
201
A
SG
CYS
183
1_555
disulf
2.024
T
CYS
168
A
SG
CYS
148
1_555
T
CYS
182
A
SG
CYS
162
1_555
disulf
1.995
T
CYS
191
A
SG
CYS
173
1_555
T
CYS
220
A
SG
CYS
197
1_555
metalc
2.232
T
CA
9
B
CA
CA
1_555
T
GLU
70
A
OE1
GLU
52
1_555
metalc
2.340
T
CA
9
B
CA
CA
1_555
T
ASN
72
A
O
ASN
54
1_555
metalc
2.239
T
CA
9
B
CA
CA
1_555
T
VAL
75
A
O
VAL
57
1_555
metalc
2.279
T
CA
9
B
CA
CA
1_555
T
GLU
80
A
OE2
GLU
62
1_555
metalc
2.300
T
CA
9
B
CA
CA
1_555
T
HOH
9200
I
O
HOH
1_555
metalc
2.509
T
CA
9
B
CA
CA
1_555
T
HOH
9201
I
O
HOH
1_555
HYDROLASE
Hydrolase, Serine protease, Serine proteinase
TRY1_BOVIN
UNP
1
21
P00760
IVGGYTCGANTVPYQVSLNSGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSNT
LNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNM
FCAGYLEGGKDSCQGDSGGPVVCSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIASN
21
243
1Y5U
16
245
P00760
T
1
1
223
1
ASN
engineered mutation
GLU
97
1Y5U
T
P00760
UNP
99
79
1
LEU
engineered mutation
TYR
99
1Y5U
T
P00760
UNP
101
81
7
7
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
T
TYR
20
A
TYR
5
T
THR
21
A
THR
6
T
LYS
156
A
LYS
136
T
PRO
161
A
PRO
141
T
GLN
135
A
GLN
115
T
GLY
140
A
GLY
120
T
PRO
198
A
PRO
180
T
CYS
201
A
CYS
183
T
LYS
204
A
LYS
186
T
TRP
215
A
TRP
193
T
GLY
226
A
GLY
204
T
LYS
230
A
LYS
208
T
MET
180
A
MET
160
T
ALA
183
A
ALA
163
T
GLN
30
A
GLN
15
T
ASN
34
A
ASN
19
T
HIS
40
A
HIS
23
T
ASN
48
A
ASN
31
T
TRP
51
A
TRP
34
T
SER
54
A
SER
37
T
MET
104
A
MET
86
T
LEU
108
A
LEU
90
T
GLN
81
A
GLN
63
T
VAL
90
A
VAL
72
T
GLN
64
A
GLN
47
T
LEU
67
A
LEU
50
T
GLN
30
A
GLN
15
T
ASN
34
A
ASN
19
BINDING SITE FOR RESIDUE CA T 9
T
CA
9
Software
6
BINDING SITE FOR RESIDUE SO4 T 3022
T
SO4
3022
Software
8
BINDING SITE FOR RESIDUE SO4 T 3023
T
SO4
3023
Software
7
BINDING SITE FOR RESIDUE TL4 T 360
T
TL4
360
Software
19
BINDING SITE FOR RESIDUE IMD T 12
T
IMD
12
Software
6
BINDING SITE FOR RESIDUE GOL T 2010
T
GOL
2010
Software
4
BINDING SITE FOR RESIDUE PEG T 501
T
PEG
501
Software
12
T
GLU
70
A
GLU
52
6
1_555
T
ASN
72
A
ASN
54
6
1_555
T
VAL
75
A
VAL
57
6
1_555
T
GLU
80
A
GLU
62
6
1_555
T
HOH
9200
I
HOH
6
1_555
T
HOH
9201
I
HOH
6
1_555
T
HIS
57
A
HIS
40
8
1_555
T
GLN
192
A
GLN
174
8
1_555
T
GLY
193
A
GLY
175
8
1_555
T
SER
195
A
SER
177
8
1_555
T
TL4
360
E
TL4
8
1_555
T
HOH
9050
I
HOH
8
1_555
T
HOH
9056
I
HOH
8
1_555
T
HOH
9179
I
HOH
8
1_555
T
LYS
87
A
LYS
69
7
1_555
T
LYS
107
A
LYS
89
7
1_555
T
THR
149
A
THR
129
7
5_565
T
GLN
192
A
GLN
174
7
5_565
T
HOH
9084
I
HOH
7
1_555
T
HOH
9136
I
HOH
7
1_555
T
HOH
9154
I
HOH
7
1_555
T
GLU
97
A
GLU
79
19
1_555
T
THR
98
A
THR
80
19
1_555
T
TYR
99
A
TYR
81
19
1_555
T
SER
127
A
SER
108
19
4_656
T
CYS
128
A
CYS
109
19
4_656
T
GLN
175
A
GLN
155
19
1_555
T
ASP
189
A
ASP
171
19
1_555
T
SER
190
A
SER
172
19
1_555
T
CYS
191
A
CYS
173
19
1_555
T
SER
195
A
SER
177
19
1_555
T
TRP
215
A
TRP
193
19
1_555
T
GLY
216
A
GLY
194
19
1_555
T
GLY
219
A
GLY
196
19
1_555
T
CYS
220
A
CYS
197
19
1_555
T
GLY
226
A
GLY
204
19
1_555
T
SO4
3022
C
SO4
19
1_555
T
HOH
9056
I
HOH
19
1_555
T
HOH
9139
I
HOH
19
1_555
T
HOH
9162
I
HOH
19
1_555
T
TYR
20
A
TYR
5
6
1_555
T
CYS
22
A
CYS
7
6
1_555
T
THR
26
A
THR
11
6
1_555
T
VAL
27
A
VAL
12
6
1_555
T
SER
116
A
SER
98
6
5_555
T
LEU
137
A
LEU
117
6
1_555
T
VAL
76
A
VAL
58
4
1_555
T
GLU
80
A
GLU
62
4
1_555
T
GLN
81
A
GLN
63
4
1_555
T
PHE
82
A
PHE
64
4
1_555
T
ARG
66
A
ARG
49
12
1_555
T
ILE
73
A
ILE
55
12
1_555
T
ASN
74
A
ASN
56
12
1_555
T
VAL
75
A
VAL
57
12
1_555
T
VAL
76
A
VAL
58
12
1_555
T
PHE
82
A
PHE
64
12
1_555
T
VAL
90
A
VAL
72
12
5_665
T
HIS
91
A
HIS
73
12
5_665
T
PRO
92
A
PRO
74
12
5_665
T
HOH
9029
I
HOH
12
1_555
T
HOH
9200
I
HOH
12
1_555
T
HOH
9210
I
HOH
12
1_555
152
P 31 2 1