0.008281 0.004781 0.000000 0.000000 0.009563 0.000000 0.000000 0.000000 0.004181 0.00000 0.00000 0.00000 Kato, M. Chuang, J.L. Wynn, R.M. Chuang, D.T. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 120.752 120.752 239.153 C10 H15 N5 O10 P2 427.201 n ADENOSINE-5'-DIPHOSPHATE non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking K 1 39.098 POTASSIUM ION non-polymer C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Mg 2 24.305 MAGNESIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C8 H16 O2 S2 208.341 DIHYDROLIPOIC ACID non-polymer C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N P N 2 N O N 3 N O N 4 N O N 5 S P N 6 N O N 7 N O N 8 N O N 9 N O N 10 N C N 11 R C N 12 N O N 13 S C N 14 N O N 15 R C N 16 N O N 17 R C Y 18 N N Y 19 N C Y 20 N N Y 21 N C Y 22 N C N 23 N N Y 24 N N Y 25 N C Y 26 N N Y 27 N C N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N H N 42 N H N 43 N N N 44 S C N 45 N C N 46 N O N 47 N C N 48 N O N 49 N H N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N N N 57 S C N 58 N C N 59 N O N 60 N C N 61 N C N 62 N C N 63 N N N 64 N C N 65 N N N 66 N N N 67 N O N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 N H N 82 N H N 83 N N N 84 S C N 85 N C N 86 N O N 87 N C N 88 N C N 89 N O N 90 N N N 91 N O N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N N N 101 S C N 102 N C N 103 N O N 104 N C N 105 N C N 106 N O N 107 N O N 108 N O N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N N N 117 R C N 118 N C N 119 N O N 120 N C N 121 N S N 122 N O N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N N N 131 S C N 132 N C N 133 N O N 134 N C N 135 N C N 136 N C N 137 N O N 138 N N N 139 N O N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N N N 151 S C N 152 N C N 153 N O N 154 N C N 155 N C N 156 N C N 157 N O N 158 N O N 159 N O N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N N N 170 N C N 171 N C N 172 N O N 173 N O N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N N N 180 S C N 181 N C N 182 N O N 183 N C Y 184 N C Y 185 N N Y 186 N C Y 187 N C Y 188 N N N 189 N O N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N O N 201 N H N 202 N H N 203 N N N 204 S C N 205 N C N 206 N O N 207 S C N 208 N C N 209 N C N 210 N C N 211 N O N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N K N 226 N N N 227 S C N 228 N C N 229 N O N 230 N C N 231 N C N 232 N C N 233 N C N 234 N O N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N N N 249 S C N 250 N C N 251 N O N 252 N C N 253 N C N 254 N C N 255 N C N 256 N N N 257 N O N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N S N 280 N C N 281 N O N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N MG N 294 N N N 295 S C N 296 N C N 297 N O N 298 N C Y 299 N C Y 300 N C Y 301 N C Y 302 N C Y 303 N C Y 304 N C N 305 N O N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N N N 318 S C N 319 N C N 320 N O N 321 N C N 322 N C N 323 N C N 324 N O N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N C N 335 N O N 336 N O N 337 N C N 338 N C N 339 N C N 340 N C N 341 R C N 342 N C N 343 N C N 344 N S N 345 N S N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N N N 363 S C N 364 N C N 365 N O N 366 N C N 367 N O N 368 N O N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N N N 377 S C N 378 N C N 379 N O N 380 R C N 381 N O N 382 N C N 383 N O N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N N N 394 S C N 395 N C N 396 N O N 397 N C Y 398 N C Y 399 N C Y 400 N C Y 401 N N Y 402 N C Y 403 N C Y 404 N C Y 405 N C Y 406 N C N 407 N O N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N N N 421 S C N 422 N C N 423 N O N 424 N C Y 425 N C Y 426 N C Y 427 N C Y 428 N C Y 429 N C Y 430 N C N 431 N O N 432 N O N 433 N H N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N H N 441 N H N 442 N H N 443 N H N 444 N N N 445 S C N 446 N C N 447 N O N 448 N C N 449 N C N 450 N C N 451 N O N 452 N H N 453 N H N 454 N H N 455 N H N 456 N H N 457 N H N 458 N H N 459 N H N 460 N H N 461 N H N 462 N H N 1 N doub N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing Y 30 N sing Y 31 N sing Y 32 N doub N 33 N sing Y 34 N sing Y 35 N sing Y 36 N doub N 37 N sing Y 38 N doub N 39 N sing N 40 N sing Y 41 N sing Y 42 N doub N 43 N sing Y 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N doub N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N doub N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N doub N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N doub N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N doub N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N doub N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N doub N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N doub N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N doub N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N doub N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N doub N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N doub N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing Y 184 N sing Y 185 N doub Y 186 N doub N 187 N sing Y 188 N sing N 189 N sing Y 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N doub N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N doub N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N doub N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N doub N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N doub N 288 N sing N 289 N sing N 290 N sing N 291 N sing Y 292 N doub Y 293 N sing Y 294 N sing N 295 N sing Y 296 N doub N 297 N sing Y 298 N doub N 299 N sing Y 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N doub N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N doub N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N doub N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N doub N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N doub N 384 N sing N 385 N sing N 386 N sing N 387 N sing Y 388 N doub Y 389 N sing Y 390 N sing N 391 N sing Y 392 N doub Y 393 N sing Y 394 N sing N 395 N sing Y 396 N sing Y 397 N doub N 398 N sing Y 399 N doub N 400 N sing Y 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N doub N 412 N sing N 413 N sing N 414 N sing N 415 N sing Y 416 N doub Y 417 N sing Y 418 N sing N 419 N sing Y 420 N doub N 421 N sing Y 422 N doub N 423 N sing Y 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N doub N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing UK Embo J. EMJODG 0897 0261-4189 24 1763 1774 10.1038/sj.emboj.7600663 15861126 Crystal structure of pyruvate dehydrogenase kinase 3 bound to lipoyl domain 2 of human pyruvate dehydrogenase complex. 2005 10.2210/pdb1y8o/pdb pdb_00001y8o 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2003-08-17 ADSC QUANTUM 310 GRAPHITE SINGLE WAVELENGTH M x-ray 1 0.97 1.0 19-ID APS 0.97 SYNCHROTRON APS BEAMLINE 19-ID 48290.980 [Pyruvate dehydrogenase [lipoamide]] kinase isozyme 3 2.7.1.99 1 man polymer 14192.097 Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex 2.3.1.12 1 man polymer 24.305 MAGNESIUM ION 1 syn non-polymer 39.098 POTASSIUM ION 2 syn non-polymer 427.201 ADENOSINE-5'-DIPHOSPHATE 1 syn non-polymer 208.341 DIHYDROLIPOIC ACID 1 syn non-polymer 18.015 water 67 nat water Pyruvate dehydrogenase kinase isoform 3 E2, Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex, PDC-E2, 70 kDa mitochondrial autoantigen of primary biliary cirrhosis, PBC, M2 antigen complex 70 kDa subunit no no GGSHHHHHHGMARLENLYFQGKQPVPKQIERYSRFSPSPLSIKQFLDFGRDNACEKTSYMFLRKELPVRLANTMREVNLL PDNLLNRPSVGLVQSWYMQSFLELLEYENKSPEDPQVLDNFLQVLIKVRNRHNDVVPTMAQGVIEYKEKFGFDPFISTNI QYFLDRFYTNRISFRMLINQHTLLFGGDTNPVHPKHIGSIDPTCNVADVVKDAYETAKMLCEQYYLVAPELEVEEFNAKA PDKPIQVVYVPSHLFHMLFELFKNSMRATVELYEDRKEGYPAVKTLVTLGKEDLSIKISDLGGGVPLRKIDRLFNYMYST APRPSLEPTRAAPLAGFGYGLPISRLYARYFQGDLKLYSMEGVGTDAVIYLKALSSESFERLPVFNKSAWRHYKTTPEAD DWSNPSSEPRDASKYKAKQ GGSHHHHHHGMARLENLYFQGKQPVPKQIERYSRFSPSPLSIKQFLDFGRDNACEKTSYMFLRKELPVRLANTMREVNLL PDNLLNRPSVGLVQSWYMQSFLELLEYENKSPEDPQVLDNFLQVLIKVRNRHNDVVPTMAQGVIEYKEKFGFDPFISTNI QYFLDRFYTNRISFRMLINQHTLLFGGDTNPVHPKHIGSIDPTCNVADVVKDAYETAKMLCEQYYLVAPELEVEEFNAKA PDKPIQVVYVPSHLFHMLFELFKNSMRATVELYEDRKEGYPAVKTLVTLGKEDLSIKISDLGGGVPLRKIDRLFNYMYST APRPSLEPTRAAPLAGFGYGLPISRLYARYFQGDLKLYSMEGVGTDAVIYLKALSSESFERLPVFNKSAWRHYKTTPEAD DWSNPSSEPRDASKYKAKQ A polypeptide(L) no no GGSHHHHHHGMARLENLYFQGSSYPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGY LAKILVPEGTRDVPLGTPLCIIVEKEADISAFADYRPTEVTDLKPQVP GGSHHHHHHGMARLENLYFQGSSYPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGY LAKILVPEGTRDVPLGTPLCIIVEKEADISAFADYRPTEVTDLKPQVP B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia Escherichia coli sample PDK3 9606 Homo sapiens 511693 Escherichia coli BL21 BL21 plasmid pTrcHisB human Homo Escherichia Escherichia coli sample DLAT, DLTA 9606 Homo sapiens 511693 Escherichia coli BL21 BL21 plasmid pTrcHisB 1 4.7 73.7 VAPOR DIFFUSION, HANGING DROP 5.6 soudium citrate, sodium potassium phosphate, sodium chrolide, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn struct_ref_seq_dif struct_site repository Initial release Version format compliance Derived calculations Version format compliance Non-polymer description Data collection Database references Derived calculations Refinement description 1 0 2005-05-24 1 1 2008-04-30 1 2 2011-07-13 1 3 2011-10-05 1 4 2023-08-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id unliganded (apo) form ATP-bound form RCSB Y RCSB 2004-12-13 REL REL MG MAGNESIUM ION K POTASSIUM ION ADP ADENOSINE-5'-DIPHOSPHATE RED DIHYDROLIPOIC ACID HOH water 1JM6 PDK2 PDB entry 1JM6 PDB experimental model MG 1 3 MG MG 501 A K 2 4 K K 502 A K 3 4 K K 503 A ADP 1 5 ADP ADP 504 A LPA 173 6 RED RED 373 B WAT 1 7 HOH HOH 505 A WAT 2 7 HOH HOH 506 A WAT 3 7 HOH HOH 507 A WAT 4 7 HOH HOH 508 A WAT 5 7 HOH HOH 509 A WAT 6 7 HOH HOH 510 A WAT 7 7 HOH HOH 511 A WAT 8 7 HOH HOH 512 A WAT 9 7 HOH HOH 513 A WAT 10 7 HOH HOH 514 A WAT 11 7 HOH HOH 515 A WAT 12 7 HOH HOH 516 A WAT 13 7 HOH HOH 517 A WAT 14 7 HOH HOH 518 A WAT 15 7 HOH HOH 519 A WAT 16 7 HOH HOH 520 A WAT 17 7 HOH HOH 521 A WAT 18 7 HOH HOH 522 A WAT 19 7 HOH HOH 523 A WAT 20 7 HOH HOH 524 A WAT 21 7 HOH HOH 525 A WAT 22 7 HOH HOH 526 A WAT 23 7 HOH HOH 527 A WAT 24 7 HOH HOH 528 A WAT 25 7 HOH HOH 529 A WAT 26 7 HOH HOH 530 A WAT 27 7 HOH HOH 531 A WAT 28 7 HOH HOH 532 A WAT 29 7 HOH HOH 533 A WAT 30 7 HOH HOH 534 A WAT 31 7 HOH HOH 535 A WAT 32 7 HOH HOH 536 A WAT 33 7 HOH HOH 537 A WAT 34 7 HOH HOH 538 A WAT 35 7 HOH HOH 539 A WAT 36 7 HOH HOH 540 A WAT 37 7 HOH HOH 541 A WAT 38 7 HOH HOH 542 A WAT 39 7 HOH HOH 543 A WAT 40 7 HOH HOH 544 A WAT 41 7 HOH HOH 545 A WAT 42 7 HOH HOH 546 A WAT 43 7 HOH HOH 547 A WAT 44 7 HOH HOH 548 A WAT 45 7 HOH HOH 549 A WAT 46 7 HOH HOH 550 A WAT 47 7 HOH HOH 551 A WAT 48 7 HOH HOH 552 A WAT 49 7 HOH HOH 553 A WAT 50 7 HOH HOH 554 A WAT 51 7 HOH HOH 555 A WAT 52 7 HOH HOH 556 A WAT 53 7 HOH HOH 557 A WAT 54 7 HOH HOH 558 A WAT 55 7 HOH HOH 559 A WAT 56 7 HOH HOH 560 A WAT 58 7 HOH HOH 561 A WAT 59 7 HOH HOH 562 A WAT 62 7 HOH HOH 563 A WAT 63 7 HOH HOH 564 A WAT 64 7 HOH HOH 565 A WAT 65 7 HOH HOH 566 A WAT 68 7 HOH HOH 567 A WAT 57 7 HOH HOH 57 B WAT 60 7 HOH HOH 60 B WAT 61 7 HOH HOH 61 B WAT 67 7 HOH HOH 67 B n 1 -12 A n 2 -11 A n 3 -10 A n 4 -9 A n 5 -8 A n 6 -7 A n 7 -6 A n 8 -5 A n 9 -4 A n 10 -3 A n 11 -2 A n 12 -1 A n 13 0 A n 14 1 A n 15 2 A n 16 3 A n 17 4 A n 18 5 A n 19 6 A n 20 7 A n 21 8 A n 22 9 A n 23 10 A n 24 11 A n 25 12 A PRO 13 n 26 PRO 13 A LYS 14 n 27 LYS 14 A GLN 15 n 28 GLN 15 A ILE 16 n 29 ILE 16 A GLU 17 n 30 GLU 17 A ARG 18 n 31 ARG 18 A TYR 19 n 32 TYR 19 A SER 20 n 33 SER 20 A ARG 21 n 34 ARG 21 A PHE 22 n 35 PHE 22 A SER 23 n 36 SER 23 A PRO 24 n 37 PRO 24 A SER 25 n 38 SER 25 A PRO 26 n 39 PRO 26 A LEU 27 n 40 LEU 27 A SER 28 n 41 SER 28 A ILE 29 n 42 ILE 29 A LYS 30 n 43 LYS 30 A GLN 31 n 44 GLN 31 A PHE 32 n 45 PHE 32 A LEU 33 n 46 LEU 33 A ASP 34 n 47 ASP 34 A PHE 35 n 48 PHE 35 A GLY 36 n 49 GLY 36 A ARG 37 n 50 ARG 37 A ASP 38 n 51 ASP 38 A ASN 39 n 52 ASN 39 A ALA 40 n 53 ALA 40 A CYS 41 n 54 CYS 41 A GLU 42 n 55 GLU 42 A LYS 43 n 56 LYS 43 A THR 44 n 57 THR 44 A SER 45 n 58 SER 45 A TYR 46 n 59 TYR 46 A MET 47 n 60 MET 47 A PHE 48 n 61 PHE 48 A LEU 49 n 62 LEU 49 A ARG 50 n 63 ARG 50 A LYS 51 n 64 LYS 51 A GLU 52 n 65 GLU 52 A LEU 53 n 66 LEU 53 A PRO 54 n 67 PRO 54 A VAL 55 n 68 VAL 55 A ARG 56 n 69 ARG 56 A LEU 57 n 70 LEU 57 A ALA 58 n 71 ALA 58 A ASN 59 n 72 ASN 59 A THR 60 n 73 THR 60 A MET 61 n 74 MET 61 A ARG 62 n 75 ARG 62 A GLU 63 n 76 GLU 63 A VAL 64 n 77 VAL 64 A ASN 65 n 78 ASN 65 A LEU 66 n 79 LEU 66 A LEU 67 n 80 LEU 67 A PRO 68 n 81 PRO 68 A ASP 69 n 82 ASP 69 A ASN 70 n 83 ASN 70 A LEU 71 n 84 LEU 71 A LEU 72 n 85 LEU 72 A ASN 73 n 86 ASN 73 A ARG 74 n 87 ARG 74 A PRO 75 n 88 PRO 75 A SER 76 n 89 SER 76 A VAL 77 n 90 VAL 77 A GLY 78 n 91 GLY 78 A LEU 79 n 92 LEU 79 A VAL 80 n 93 VAL 80 A GLN 81 n 94 GLN 81 A SER 82 n 95 SER 82 A TRP 83 n 96 TRP 83 A TYR 84 n 97 TYR 84 A MET 85 n 98 MET 85 A GLN 86 n 99 GLN 86 A SER 87 n 100 SER 87 A PHE 88 n 101 PHE 88 A LEU 89 n 102 LEU 89 A GLU 90 n 103 GLU 90 A LEU 91 n 104 LEU 91 A LEU 92 n 105 LEU 92 A GLU 93 n 106 GLU 93 A TYR 94 n 107 TYR 94 A GLU 95 n 108 GLU 95 A ASN 96 n 109 ASN 96 A LYS 97 n 110 LYS 97 A SER 98 n 111 SER 98 A PRO 99 n 112 PRO 99 A GLU 100 n 113 GLU 100 A ASP 101 n 114 ASP 101 A PRO 102 n 115 PRO 102 A GLN 103 n 116 GLN 103 A VAL 104 n 117 VAL 104 A LEU 105 n 118 LEU 105 A ASP 106 n 119 ASP 106 A ASN 107 n 120 ASN 107 A PHE 108 n 121 PHE 108 A LEU 109 n 122 LEU 109 A GLN 110 n 123 GLN 110 A VAL 111 n 124 VAL 111 A LEU 112 n 125 LEU 112 A ILE 113 n 126 ILE 113 A LYS 114 n 127 LYS 114 A VAL 115 n 128 VAL 115 A ARG 116 n 129 ARG 116 A ASN 117 n 130 ASN 117 A ARG 118 n 131 ARG 118 A HIS 119 n 132 HIS 119 A ASN 120 n 133 ASN 120 A ASP 121 n 134 ASP 121 A VAL 122 n 135 VAL 122 A VAL 123 n 136 VAL 123 A PRO 124 n 137 PRO 124 A THR 125 n 138 THR 125 A MET 126 n 139 MET 126 A ALA 127 n 140 ALA 127 A GLN 128 n 141 GLN 128 A GLY 129 n 142 GLY 129 A VAL 130 n 143 VAL 130 A ILE 131 n 144 ILE 131 A GLU 132 n 145 GLU 132 A TYR 133 n 146 TYR 133 A LYS 134 n 147 LYS 134 A GLU 135 n 148 GLU 135 A LYS 136 n 149 LYS 136 A PHE 137 n 150 PHE 137 A GLY 138 n 151 GLY 138 A PHE 139 n 152 PHE 139 A ASP 140 n 153 ASP 140 A PRO 141 n 154 PRO 141 A PHE 142 n 155 PHE 142 A ILE 143 n 156 ILE 143 A SER 144 n 157 SER 144 A THR 145 n 158 THR 145 A ASN 146 n 159 ASN 146 A ILE 147 n 160 ILE 147 A GLN 148 n 161 GLN 148 A TYR 149 n 162 TYR 149 A PHE 150 n 163 PHE 150 A LEU 151 n 164 LEU 151 A ASP 152 n 165 ASP 152 A ARG 153 n 166 ARG 153 A PHE 154 n 167 PHE 154 A TYR 155 n 168 TYR 155 A THR 156 n 169 THR 156 A ASN 157 n 170 ASN 157 A ARG 158 n 171 ARG 158 A ILE 159 n 172 ILE 159 A SER 160 n 173 SER 160 A PHE 161 n 174 PHE 161 A ARG 162 n 175 ARG 162 A MET 163 n 176 MET 163 A LEU 164 n 177 LEU 164 A ILE 165 n 178 ILE 165 A ASN 166 n 179 ASN 166 A GLN 167 n 180 GLN 167 A HIS 168 n 181 HIS 168 A THR 169 n 182 THR 169 A LEU 170 n 183 LEU 170 A LEU 171 n 184 LEU 171 A PHE 172 n 185 PHE 172 A GLY 173 n 186 GLY 173 A GLY 174 n 187 GLY 174 A ASP 175 n 188 ASP 175 A THR 176 n 189 THR 176 A ASN 177 n 190 ASN 177 A PRO 178 n 191 PRO 178 A VAL 179 n 192 VAL 179 A HIS 180 n 193 HIS 180 A PRO 181 n 194 PRO 181 A LYS 182 n 195 LYS 182 A HIS 183 n 196 HIS 183 A ILE 184 n 197 ILE 184 A GLY 185 n 198 GLY 185 A SER 186 n 199 SER 186 A ILE 187 n 200 ILE 187 A ASP 188 n 201 ASP 188 A PRO 189 n 202 PRO 189 A THR 190 n 203 THR 190 A CYS 191 n 204 CYS 191 A ASN 192 n 205 ASN 192 A VAL 193 n 206 VAL 193 A ALA 194 n 207 ALA 194 A ASP 195 n 208 ASP 195 A VAL 196 n 209 VAL 196 A VAL 197 n 210 VAL 197 A LYS 198 n 211 LYS 198 A ASP 199 n 212 ASP 199 A ALA 200 n 213 ALA 200 A TYR 201 n 214 TYR 201 A GLU 202 n 215 GLU 202 A THR 203 n 216 THR 203 A ALA 204 n 217 ALA 204 A LYS 205 n 218 LYS 205 A MET 206 n 219 MET 206 A LEU 207 n 220 LEU 207 A CYS 208 n 221 CYS 208 A GLU 209 n 222 GLU 209 A GLN 210 n 223 GLN 210 A TYR 211 n 224 TYR 211 A TYR 212 n 225 TYR 212 A LEU 213 n 226 LEU 213 A VAL 214 n 227 VAL 214 A ALA 215 n 228 ALA 215 A PRO 216 n 229 PRO 216 A GLU 217 n 230 GLU 217 A LEU 218 n 231 LEU 218 A GLU 219 n 232 GLU 219 A VAL 220 n 233 VAL 220 A GLU 221 n 234 GLU 221 A GLU 222 n 235 GLU 222 A PHE 223 n 236 PHE 223 A ASN 224 n 237 ASN 224 A ALA 225 n 238 ALA 225 A LYS 226 n 239 LYS 226 A ALA 227 n 240 ALA 227 A PRO 228 n 241 PRO 228 A ASP 229 n 242 ASP 229 A LYS 230 n 243 LYS 230 A PRO 231 n 244 PRO 231 A ILE 232 n 245 ILE 232 A GLN 233 n 246 GLN 233 A VAL 234 n 247 VAL 234 A VAL 235 n 248 VAL 235 A TYR 236 n 249 TYR 236 A VAL 237 n 250 VAL 237 A PRO 238 n 251 PRO 238 A SER 239 n 252 SER 239 A HIS 240 n 253 HIS 240 A LEU 241 n 254 LEU 241 A PHE 242 n 255 PHE 242 A HIS 243 n 256 HIS 243 A MET 244 n 257 MET 244 A LEU 245 n 258 LEU 245 A PHE 246 n 259 PHE 246 A GLU 247 n 260 GLU 247 A LEU 248 n 261 LEU 248 A PHE 249 n 262 PHE 249 A LYS 250 n 263 LYS 250 A ASN 251 n 264 ASN 251 A SER 252 n 265 SER 252 A MET 253 n 266 MET 253 A ARG 254 n 267 ARG 254 A ALA 255 n 268 ALA 255 A THR 256 n 269 THR 256 A VAL 257 n 270 VAL 257 A GLU 258 n 271 GLU 258 A LEU 259 n 272 LEU 259 A TYR 260 n 273 TYR 260 A GLU 261 n 274 GLU 261 A ASP 262 n 275 ASP 262 A ARG 263 n 276 ARG 263 A LYS 264 n 277 LYS 264 A GLU 265 n 278 GLU 265 A GLY 266 n 279 GLY 266 A TYR 267 n 280 TYR 267 A PRO 268 n 281 PRO 268 A ALA 269 n 282 ALA 269 A VAL 270 n 283 VAL 270 A LYS 271 n 284 LYS 271 A THR 272 n 285 THR 272 A LEU 273 n 286 LEU 273 A VAL 274 n 287 VAL 274 A THR 275 n 288 THR 275 A LEU 276 n 289 LEU 276 A GLY 277 n 290 GLY 277 A LYS 278 n 291 LYS 278 A GLU 279 n 292 GLU 279 A ASP 280 n 293 ASP 280 A LEU 281 n 294 LEU 281 A SER 282 n 295 SER 282 A ILE 283 n 296 ILE 283 A LYS 284 n 297 LYS 284 A ILE 285 n 298 ILE 285 A SER 286 n 299 SER 286 A ASP 287 n 300 ASP 287 A LEU 288 n 301 LEU 288 A GLY 289 n 302 GLY 289 A GLY 290 n 303 GLY 290 A GLY 291 n 304 GLY 291 A VAL 292 n 305 VAL 292 A PRO 293 n 306 PRO 293 A LEU 294 n 307 LEU 294 A ARG 295 n 308 ARG 295 A LYS 296 n 309 LYS 296 A ILE 297 n 310 ILE 297 A ASP 298 n 311 ASP 298 A ARG 299 n 312 ARG 299 A LEU 300 n 313 LEU 300 A PHE 301 n 314 PHE 301 A ASN 302 n 315 ASN 302 A TYR 303 n 316 TYR 303 A MET 304 n 317 MET 304 A TYR 305 n 318 TYR 305 A SER 306 n 319 SER 306 A n 320 307 A n 321 308 A n 322 309 A n 323 310 A n 324 311 A n 325 312 A n 326 313 A n 327 314 A n 328 315 A n 329 316 A n 330 317 A n 331 318 A n 332 319 A PRO 320 n 333 PRO 320 A LEU 321 n 334 LEU 321 A n 335 322 A n 336 323 A PHE 324 n 337 PHE 324 A GLY 325 n 338 GLY 325 A TYR 326 n 339 TYR 326 A GLY 327 n 340 GLY 327 A LEU 328 n 341 LEU 328 A PRO 329 n 342 PRO 329 A ILE 330 n 343 ILE 330 A SER 331 n 344 SER 331 A ARG 332 n 345 ARG 332 A LEU 333 n 346 LEU 333 A TYR 334 n 347 TYR 334 A ALA 335 n 348 ALA 335 A ARG 336 n 349 ARG 336 A TYR 337 n 350 TYR 337 A PHE 338 n 351 PHE 338 A GLN 339 n 352 GLN 339 A GLY 340 n 353 GLY 340 A ASP 341 n 354 ASP 341 A LEU 342 n 355 LEU 342 A LYS 343 n 356 LYS 343 A LEU 344 n 357 LEU 344 A TYR 345 n 358 TYR 345 A SER 346 n 359 SER 346 A MET 347 n 360 MET 347 A GLU 348 n 361 GLU 348 A GLY 349 n 362 GLY 349 A VAL 350 n 363 VAL 350 A GLY 351 n 364 GLY 351 A THR 352 n 365 THR 352 A ASP 353 n 366 ASP 353 A ALA 354 n 367 ALA 354 A VAL 355 n 368 VAL 355 A ILE 356 n 369 ILE 356 A TYR 357 n 370 TYR 357 A LEU 358 n 371 LEU 358 A LYS 359 n 372 LYS 359 A ALA 360 n 373 ALA 360 A LEU 361 n 374 LEU 361 A SER 362 n 375 SER 362 A SER 363 n 376 SER 363 A GLU 364 n 377 GLU 364 A SER 365 n 378 SER 365 A PHE 366 n 379 PHE 366 A GLU 367 n 380 GLU 367 A ARG 368 n 381 ARG 368 A LEU 369 n 382 LEU 369 A PRO 370 n 383 PRO 370 A VAL 371 n 384 VAL 371 A PHE 372 n 385 PHE 372 A ASN 373 n 386 ASN 373 A LYS 374 n 387 LYS 374 A SER 375 n 388 SER 375 A ALA 376 n 389 ALA 376 A TRP 377 n 390 TRP 377 A ARG 378 n 391 ARG 378 A HIS 379 n 392 HIS 379 A TYR 380 n 393 TYR 380 A LYS 381 n 394 LYS 381 A THR 382 n 395 THR 382 A THR 383 n 396 THR 383 A PRO 384 n 397 PRO 384 A GLU 385 n 398 GLU 385 A ALA 386 n 399 ALA 386 A ASP 387 n 400 ASP 387 A ASP 388 n 401 ASP 388 A TRP 389 n 402 TRP 389 A SER 390 n 403 SER 390 A ASN 391 n 404 ASN 391 A PRO 392 n 405 PRO 392 A SER 393 n 406 SER 393 A SER 394 n 407 SER 394 A GLU 395 n 408 GLU 395 A PRO 396 n 409 PRO 396 A ARG 397 n 410 ARG 397 A ASP 398 n 411 ASP 398 A ALA 399 n 412 ALA 399 A SER 400 n 413 SER 400 A LYS 401 n 414 LYS 401 A n 415 402 A n 416 403 A n 417 404 A n 418 405 A n 419 406 A n 1 106 B n 2 107 B n 3 108 B n 4 109 B n 5 110 B n 6 111 B n 7 112 B n 8 113 B n 9 114 B n 10 115 B n 11 116 B n 12 117 B n 13 118 B n 14 119 B n 15 120 B n 16 121 B n 17 122 B n 18 123 B n 19 124 B n 20 125 B n 21 126 B n 22 127 B SER 128 n 23 SER 128 B TYR 129 n 24 TYR 129 B PRO 130 n 25 PRO 130 B PRO 131 n 26 PRO 131 B HIS 132 n 27 HIS 132 B MET 133 n 28 MET 133 B GLN 134 n 29 GLN 134 B VAL 135 n 30 VAL 135 B LEU 136 n 31 LEU 136 B LEU 137 n 32 LEU 137 B PRO 138 n 33 PRO 138 B ALA 139 n 34 ALA 139 B LEU 140 n 35 LEU 140 B SER 141 n 36 SER 141 B PRO 142 n 37 PRO 142 B THR 143 n 38 THR 143 B MET 144 n 39 MET 144 B THR 145 n 40 THR 145 B MET 146 n 41 MET 146 B GLY 147 n 42 GLY 147 B THR 148 n 43 THR 148 B VAL 149 n 44 VAL 149 B GLN 150 n 45 GLN 150 B ARG 151 n 46 ARG 151 B TRP 152 n 47 TRP 152 B GLU 153 n 48 GLU 153 B LYS 154 n 49 LYS 154 B LYS 155 n 50 LYS 155 B VAL 156 n 51 VAL 156 B GLY 157 n 52 GLY 157 B GLU 158 n 53 GLU 158 B LYS 159 n 54 LYS 159 B LEU 160 n 55 LEU 160 B SER 161 n 56 SER 161 B GLU 162 n 57 GLU 162 B GLY 163 n 58 GLY 163 B ASP 164 n 59 ASP 164 B LEU 165 n 60 LEU 165 B LEU 166 n 61 LEU 166 B ALA 167 n 62 ALA 167 B GLU 168 n 63 GLU 168 B ILE 169 n 64 ILE 169 B GLU 170 n 65 GLU 170 B THR 171 n 66 THR 171 B ASP 172 n 67 ASP 172 B LYS 173 n 68 LYS 173 B ALA 174 n 69 ALA 174 B THR 175 n 70 THR 175 B ILE 176 n 71 ILE 176 B GLY 177 n 72 GLY 177 B PHE 178 n 73 PHE 178 B GLU 179 n 74 GLU 179 B VAL 180 n 75 VAL 180 B GLN 181 n 76 GLN 181 B GLU 182 n 77 GLU 182 B GLU 183 n 78 GLU 183 B GLY 184 n 79 GLY 184 B TYR 185 n 80 TYR 185 B LEU 186 n 81 LEU 186 B ALA 187 n 82 ALA 187 B LYS 188 n 83 LYS 188 B ILE 189 n 84 ILE 189 B LEU 190 n 85 LEU 190 B VAL 191 n 86 VAL 191 B PRO 192 n 87 PRO 192 B GLU 193 n 88 GLU 193 B GLY 194 n 89 GLY 194 B THR 195 n 90 THR 195 B ARG 196 n 91 ARG 196 B ASP 197 n 92 ASP 197 B VAL 198 n 93 VAL 198 B PRO 199 n 94 PRO 199 B LEU 200 n 95 LEU 200 B GLY 201 n 96 GLY 201 B THR 202 n 97 THR 202 B PRO 203 n 98 PRO 203 B LEU 204 n 99 LEU 204 B CYS 205 n 100 CYS 205 B ILE 206 n 101 ILE 206 B ILE 207 n 102 ILE 207 B VAL 208 n 103 VAL 208 B GLU 209 n 104 GLU 209 B LYS 210 n 105 LYS 210 B GLU 211 n 106 GLU 211 B ALA 212 n 107 ALA 212 B ASP 213 n 108 ASP 213 B ILE 214 n 109 ILE 214 B SER 215 n 110 SER 215 B ALA 216 n 111 ALA 216 B PHE 217 n 112 PHE 217 B ALA 218 n 113 ALA 218 B ASP 219 n 114 ASP 219 B TYR 220 n 115 TYR 220 B n 116 221 B n 117 222 B n 118 223 B n 119 224 B n 120 225 B ALA 226 n 121 THR 226 B ALA 227 n 122 ASP 227 B ALA 228 n 123 LEU 228 B ALA 229 n 124 LYS 229 B n 125 230 B n 126 231 B n 127 232 B n 128 233 B author_and_software_defined_assembly PISA,PQS 4 tetrameric 13130 -54 41000 A SER 20 A O SER 33 1_555 A K 503 E K K 1_555 A PHE 22 A O PHE 35 1_555 92.6 A SER 20 A O SER 33 1_555 A K 503 E K K 1_555 A ASN 59 A OD1 ASN 72 1_555 84.7 A PHE 22 A O PHE 35 1_555 A K 503 E K K 1_555 A ASN 59 A OD1 ASN 72 1_555 90.2 A SER 20 A O SER 33 1_555 A K 503 E K K 1_555 A PHE 372 A O PHE 385 1_555 89.3 A PHE 22 A O PHE 35 1_555 A K 503 E K K 1_555 A PHE 372 A O PHE 385 1_555 177.3 A ASN 59 A OD1 ASN 72 1_555 A K 503 E K K 1_555 A PHE 372 A O PHE 385 1_555 91.9 A ASN 251 A OD1 ASN 264 1_555 A MG 501 C MG MG 1_555 A ADP 504 F O2A ADP 1_555 76.4 A ASN 251 A OD1 ASN 264 1_555 A MG 501 C MG MG 1_555 A ADP 504 F O3B ADP 1_555 73.8 A ADP 504 F O2A ADP 1_555 A MG 501 C MG MG 1_555 A ADP 504 F O3B ADP 1_555 68.8 A ASN 251 A OD1 ASN 264 1_555 A MG 501 C MG MG 1_555 A HOH 560 H O HOH 1_555 88.3 A ADP 504 F O2A ADP 1_555 A MG 501 C MG MG 1_555 A HOH 560 H O HOH 1_555 64.5 A ADP 504 F O3B ADP 1_555 A MG 501 C MG MG 1_555 A HOH 560 H O HOH 1_555 132.6 A LEU 300 A O LEU 313 1_555 A K 502 D K K 1_555 A ASN 302 A O ASN 315 1_555 89.5 A LEU 300 A O LEU 313 1_555 A K 502 D K K 1_555 A SER 306 A O SER 319 1_555 105.0 A ASN 302 A O ASN 315 1_555 A K 502 D K K 1_555 A SER 306 A O SER 319 1_555 77.2 A LEU 300 A O LEU 313 1_555 A K 502 D K K 1_555 A GLY 325 A O GLY 338 1_555 138.4 A ASN 302 A O ASN 315 1_555 A K 502 D K K 1_555 A GLY 325 A O GLY 338 1_555 82.7 A SER 306 A O SER 319 1_555 A K 502 D K K 1_555 A GLY 325 A O GLY 338 1_555 112.8 A LEU 300 A O LEU 313 1_555 A K 502 D K K 1_555 A ADP 504 F O1A ADP 1_555 92.8 A ASN 302 A O ASN 315 1_555 A K 502 D K K 1_555 A ADP 504 F O1A ADP 1_555 151.8 A SER 306 A O SER 319 1_555 A K 502 D K K 1_555 A ADP 504 F O1A ADP 1_555 128.9 A GLY 325 A O GLY 338 1_555 A K 502 D K K 1_555 A ADP 504 F O1A ADP 1_555 77.1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 11_455 -x+y-1,y,-z+1/2 crystal symmetry operation -120.7520000000 0.0000000000 119.5765000000 A N ASP 188 A N ASP 201 A O TYR 236 A O TYR 249 A N GLU 221 A N GLU 234 A O THR 272 A O THR 285 A N THR 275 A N THR 288 A O SER 282 A O SER 295 A N LEU 281 A N LEU 294 A O LEU 358 A O LEU 371 A O VAL 355 A O VAL 368 A N LYS 343 A N LYS 356 B N VAL 135 B N VAL 30 B O LEU 204 B O LEU 99 B O ILE 206 B O ILE 101 B N LYS 188 B N LYS 83 B O GLY 184 B O GLY 79 B N LEU 160 B N LEU 55 B O PHE 178 B O PHE 73 B N LEU 166 B N LEU 61 B O GLU 170 B O GLU 65 B N THR 148 B N THR 43 B N GLY 147 B N GLY 42 B O VAL 198 B O VAL 93 1 B OG1 THR 226 B OG1 THR 121 1 Y 1 B CG2 THR 226 B CG2 THR 121 1 Y 1 B CG ASP 227 B CG ASP 122 1 Y 1 B OD1 ASP 227 B OD1 ASP 122 1 Y 1 B OD2 ASP 227 B OD2 ASP 122 1 Y 1 B CG LEU 228 B CG LEU 123 1 Y 1 B CD1 LEU 228 B CD1 LEU 123 1 Y 1 B CD2 LEU 228 B CD2 LEU 123 1 Y 1 B CG LYS 229 B CG LYS 124 1 Y 1 B CD LYS 229 B CD LYS 124 1 Y 1 B CE LYS 229 B CE LYS 124 1 Y 1 B NZ LYS 229 B NZ LYS 124 1 Y 1 B OXT RED 373 G OXT RED 1 1 N 1 A GLY -12 A GLY 1 1 Y 1 A GLY -11 A GLY 2 1 Y 1 A SER -10 A SER 3 1 Y 1 A HIS -9 A HIS 4 1 Y 1 A HIS -8 A HIS 5 1 Y 1 A HIS -7 A HIS 6 1 Y 1 A HIS -6 A HIS 7 1 Y 1 A HIS -5 A HIS 8 1 Y 1 A HIS -4 A HIS 9 1 Y 1 A GLY -3 A GLY 10 1 Y 1 A MET -2 A MET 11 1 Y 1 A ALA -1 A ALA 12 1 Y 1 A ARG 0 A ARG 13 1 Y 1 A LEU 1 A LEU 14 1 Y 1 A GLU 2 A GLU 15 1 Y 1 A ASN 3 A ASN 16 1 Y 1 A LEU 4 A LEU 17 1 Y 1 A TYR 5 A TYR 18 1 Y 1 A PHE 6 A PHE 19 1 Y 1 A GLN 7 A GLN 20 1 Y 1 A GLY 8 A GLY 21 1 Y 1 A LYS 9 A LYS 22 1 Y 1 A GLN 10 A GLN 23 1 Y 1 A PRO 11 A PRO 24 1 Y 1 A VAL 12 A VAL 25 1 Y 1 A THR 307 A THR 320 1 Y 1 A ALA 308 A ALA 321 1 Y 1 A PRO 309 A PRO 322 1 Y 1 A ARG 310 A ARG 323 1 Y 1 A PRO 311 A PRO 324 1 Y 1 A SER 312 A SER 325 1 Y 1 A LEU 313 A LEU 326 1 Y 1 A GLU 314 A GLU 327 1 Y 1 A PRO 315 A PRO 328 1 Y 1 A THR 316 A THR 329 1 Y 1 A ARG 317 A ARG 330 1 Y 1 A ALA 318 A ALA 331 1 Y 1 A ALA 319 A ALA 332 1 Y 1 A ALA 322 A ALA 335 1 Y 1 A GLY 323 A GLY 336 1 Y 1 A TYR 402 A TYR 415 1 Y 1 A LYS 403 A LYS 416 1 Y 1 A ALA 404 A ALA 417 1 Y 1 A LYS 405 A LYS 418 1 Y 1 A GLN 406 A GLN 419 1 Y 1 B GLY 106 B GLY 1 1 Y 1 B GLY 107 B GLY 2 1 Y 1 B SER 108 B SER 3 1 Y 1 B HIS 109 B HIS 4 1 Y 1 B HIS 110 B HIS 5 1 Y 1 B HIS 111 B HIS 6 1 Y 1 B HIS 112 B HIS 7 1 Y 1 B HIS 113 B HIS 8 1 Y 1 B HIS 114 B HIS 9 1 Y 1 B GLY 115 B GLY 10 1 Y 1 B MET 116 B MET 11 1 Y 1 B ALA 117 B ALA 12 1 Y 1 B ARG 118 B ARG 13 1 Y 1 B LEU 119 B LEU 14 1 Y 1 B GLU 120 B GLU 15 1 Y 1 B ASN 121 B ASN 16 1 Y 1 B LEU 122 B LEU 17 1 Y 1 B TYR 123 B TYR 18 1 Y 1 B PHE 124 B PHE 19 1 Y 1 B GLN 125 B GLN 20 1 Y 1 B GLY 126 B GLY 21 1 Y 1 B SER 127 B SER 22 1 Y 1 B ARG 221 B ARG 116 1 Y 1 B PRO 222 B PRO 117 1 Y 1 B THR 223 B THR 118 1 Y 1 B GLU 224 B GLU 119 1 Y 1 B VAL 225 B VAL 120 1 Y 1 B PRO 230 B PRO 125 1 Y 1 B GLN 231 B GLN 126 1 Y 1 B VAL 232 B VAL 127 1 Y 1 B PRO 233 B PRO 128 1 Y 1 B B NZ C1 LYS RED 173 373 1.78 1 B B THR ASP 171 172 148.86 1 B B C N ALA PHE 216 217 1.66 1 -3.12 0.50 120.30 117.18 A A A NE CZ NH2 ARG ARG ARG 18 18 18 N 1 9.46 1.50 119.30 128.76 A A A C N CA ASP PRO PRO 140 141 141 Y 1 5.48 0.90 118.30 123.78 A A A CB CG OD1 ASP ASP ASP 199 199 199 N 1 4.75 0.50 120.30 125.05 A A A NE CZ NH1 ARG ARG ARG 336 336 336 N 1 -4.10 0.50 120.30 116.20 A A A NE CZ NH2 ARG ARG ARG 336 336 336 N 1 -12.74 1.80 110.60 97.86 A A A N CA CB ASP ASP ASP 388 388 388 N 1 A A CZ NH1 ARG ARG 18 18 0.082 0.013 1.326 1.408 N 1 B B CD OE1 GLU GLU 211 211 0.072 0.011 1.252 1.324 N 1 B B CB OG SER SER 215 215 0.173 0.013 1.418 1.591 N 1 B B C O ALA ALA 216 216 -0.198 0.019 1.229 1.031 N 1 B B C O TYR TYR 220 220 0.212 0.019 1.229 1.441 N 1 A ASN 39 -103.85 -86.24 1 A GLU 100 -67.65 17.41 1 A ALA 227 -172.28 88.47 1 A VAL 350 -124.28 -59.36 1 A ASP 388 -36.89 -34.23 1 B ASP 172 -29.03 -33.02 1 B ALA 218 -73.90 39.51 64.054 -0.08 -0.04 0.00 -0.08 0.00 0.12 0.953 0.933 0.234 0.2101 0.21105 0.21105 2.48 50.00 1494 37232 35738 4.0 99.73 12.663 0.143 RANDOM 1 THROUGHOUT 0 MOLECULAR REPLACEMENT 0.233 0.195 0.80 0.80 1.20 PDK2 PDB entry 1JM6 MAXIMUM LIKELIHOOD MASK 0.163 2.48 50.00 67 3898 41 0 3790 0.019 0.022 3935 1.685 1.989 5334 6.531 5.000 468 33.532 24.121 182 19.327 15.000 675 17.301 15.000 23 0.117 0.200 581 0.006 0.020 2970 0.241 0.200 1646 0.318 0.200 2655 0.128 0.200 134 0.184 0.200 5 0.195 0.200 64 0.163 0.200 18 0.741 1.500 2365 1.429 2.000 3837 2.557 3.000 1596 3.975 4.500 1497 0.399 0.389 2.544 103 2564 20 99.44 2.48 50 1Y8O 37333 37232 -3 0.038 1 54.6 11.3 99.8 0.749 2.48 2.57 3.5 3657 1 9.1 100 refinement REFMAC 5.2.0005 data reduction HKL-2000 data scaling SCALEPACK phasing AMoRE Crystal structure of the PDK3-L2 complex 1 N N 2 N N 3 N N 4 N N 4 N N 5 N N 6 N N 7 N N 7 N N The second part of the biological assembly is generated by the operation: y-x-1, y, 1/2-z. A PRO 13 A PRO 26 HELX_P A PHE 22 A PHE 35 1 1 10 A SER 28 A SER 41 HELX_P A ASN 39 A ASN 52 1 2 12 A CYS 41 A CYS 54 HELX_P A ASN 65 A ASN 78 1 3 25 A PRO 68 A PRO 81 HELX_P A ASN 73 A ASN 86 1 4 6 A ARG 74 A ARG 87 HELX_P A GLU 93 A GLU 106 1 5 20 A TYR 94 A TYR 107 HELX_P A LYS 97 A LYS 110 5 6 4 A ASP 101 A ASP 114 HELX_P A HIS 119 A HIS 132 1 7 19 A ASP 121 A ASP 134 HELX_P A GLY 138 A GLY 151 1 8 18 A ASP 140 A ASP 153 HELX_P A GLY 173 A GLY 186 1 9 34 A VAL 193 A VAL 206 HELX_P A LEU 213 A LEU 226 1 10 21 A VAL 237 A VAL 250 HELX_P A GLU 261 A GLU 274 1 11 25 A PRO 293 A PRO 306 HELX_P A ASP 298 A ASP 311 1 12 6 A ARG 299 A ARG 312 HELX_P A ASN 302 A ASN 315 5 13 4 A TYR 326 A TYR 339 HELX_P A PHE 338 A PHE 351 1 14 13 A LEU 361 A LEU 374 HELX_P A SER 365 A SER 378 5 15 5 A ASN 373 A ASN 386 HELX_P A LYS 381 A LYS 394 1 16 9 B LYS 210 B LYS 105 HELX_P B ALA 218 B ALA 113 5 17 9 metalc 2.525 A SER 20 A O SER 33 1_555 A K 503 E K K 1_555 metalc 2.638 A PHE 22 A O PHE 35 1_555 A K 503 E K K 1_555 metalc 2.696 A ASN 59 A OD1 ASN 72 1_555 A K 503 E K K 1_555 metalc 2.788 A ASN 251 A OD1 ASN 264 1_555 A MG 501 C MG MG 1_555 metalc 2.646 A LEU 300 A O LEU 313 1_555 A K 502 D K K 1_555 metalc 3.325 A ASN 302 A O ASN 315 1_555 A K 502 D K K 1_555 metalc 3.323 A SER 306 A O SER 319 1_555 A K 502 D K K 1_555 metalc 2.813 A GLY 325 A O GLY 338 1_555 A K 502 D K K 1_555 metalc 2.575 A PHE 372 A O PHE 385 1_555 A K 503 E K K 1_555 metalc 2.460 A MG 501 C MG MG 1_555 A ADP 504 F O2A ADP 1_555 metalc 2.510 A MG 501 C MG MG 1_555 A ADP 504 F O3B ADP 1_555 metalc 2.235 A MG 501 C MG MG 1_555 A HOH 560 H O HOH 1_555 metalc 2.799 A K 502 D K K 1_555 A ADP 504 F O1A ADP 1_555 TRANSFERASE pyruvate dehydrogenase kinase 3, lipoyl-bearing domain, protein-protein complex, transferase PDK3_HUMAN UNP 1 9 Q15120 KQPVPKQIERYSRFSPSPLSIKQFLDFGRDNACEKTSYMFLRKELPVRLANTMREVNLLPDNLLNRPSVGLVQSWYMQSF LELLEYENKSPEDPQVLDNFLQVLIKVRNRHNDVVPTMAQGVIEYKEKFGFDPFISTNIQYFLDRFYTNRISFRMLINQH TLLFGGDTNPVHPKHIGSIDPTCNVADVVKDAYETAKMLCEQYYLVAPELEVEEFNAKAPDKPIQVVYVPSHLFHMLFEL FKNSMRATVELYEDRKEGYPAVKTLVTLGKEDLSIKISDLGGGVPLRKIDRLFNYMYSTAPRPSLEPTRAAPLAGFGYGL PISRLYARYFQGDLKLYSMEGVGTDAVIYLKALSSESFERLPVFNKSAWRHYKTTPEADDWSNPSSEPRDASKYKAKQ ODP2_HUMAN UNP 2 179 P10515 GSSYPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLC IIVEKEADISAFADYRPTEVTDLKPQVP 9 406 1Y8O 9 406 Q15120 A 1 22 419 179 286 1Y8O 126 233 P10515 B 2 21 128 1 cloning artifact GLY -12 1Y8O A Q15120 UNP 1 1 cloning artifact GLY -11 1Y8O A Q15120 UNP 2 1 cloning artifact SER -10 1Y8O A Q15120 UNP 3 1 expression tag HIS -9 1Y8O A Q15120 UNP 4 1 expression tag HIS -8 1Y8O A Q15120 UNP 5 1 expression tag HIS -7 1Y8O A Q15120 UNP 6 1 expression tag HIS -6 1Y8O A Q15120 UNP 7 1 expression tag HIS -5 1Y8O A Q15120 UNP 8 1 expression tag HIS -4 1Y8O A Q15120 UNP 9 1 cloning artifact GLY -3 1Y8O A Q15120 UNP 10 1 cloning artifact MET -2 1Y8O A Q15120 UNP 11 1 cloning artifact ALA -1 1Y8O A Q15120 UNP 12 1 cloning artifact ARG 0 1Y8O A Q15120 UNP 13 1 cloning artifact LEU 1 1Y8O A Q15120 UNP 14 1 cloning artifact GLU 2 1Y8O A Q15120 UNP 15 1 cloning artifact ASN 3 1Y8O A Q15120 UNP 16 1 cloning artifact LEU 4 1Y8O A Q15120 UNP 17 1 cloning artifact TYR 5 1Y8O A Q15120 UNP 18 1 cloning artifact PHE 6 1Y8O A Q15120 UNP 19 1 cloning artifact GLN 7 1Y8O A Q15120 UNP 20 1 cloning artifact GLY 8 1Y8O A Q15120 UNP 21 2 cloning artifact GLY 106 1Y8O B P10515 UNP 1 2 cloning artifact GLY 107 1Y8O B P10515 UNP 2 2 cloning artifact SER 108 1Y8O B P10515 UNP 3 2 expression tag HIS 109 1Y8O B P10515 UNP 4 2 expression tag HIS 110 1Y8O B P10515 UNP 5 2 expression tag HIS 111 1Y8O B P10515 UNP 6 2 expression tag HIS 112 1Y8O B P10515 UNP 7 2 expression tag HIS 113 1Y8O B P10515 UNP 8 2 expression tag HIS 114 1Y8O B P10515 UNP 9 2 cloning artifact GLY 115 1Y8O B P10515 UNP 10 2 cloning artifact MET 116 1Y8O B P10515 UNP 11 2 cloning artifact ALA 117 1Y8O B P10515 UNP 12 2 cloning artifact ARG 118 1Y8O B P10515 UNP 13 2 cloning artifact LEU 119 1Y8O B P10515 UNP 14 2 cloning artifact GLU 120 1Y8O B P10515 UNP 15 2 cloning artifact ASN 121 1Y8O B P10515 UNP 16 2 cloning artifact LEU 122 1Y8O B P10515 UNP 17 2 cloning artifact TYR 123 1Y8O B P10515 UNP 18 2 cloning artifact PHE 124 1Y8O B P10515 UNP 19 2 cloning artifact GLN 125 1Y8O B P10515 UNP 20 2 5 4 4 anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A ASP 188 A ASP 201 A ASN 192 A ASN 205 A GLN 233 A GLN 246 A TYR 236 A TYR 249 A LEU 218 A LEU 231 A ASN 224 A ASN 237 A VAL 270 A VAL 283 A LEU 276 A LEU 289 A ASP 280 A ASP 293 A ASP 287 A ASP 300 A GLY 351 A GLY 364 A LYS 359 A LYS 372 A ASP 341 A ASP 354 A MET 347 A MET 360 B HIS 132 B HIS 27 B LEU 136 B LEU 31 B PRO 203 B PRO 98 B VAL 208 B VAL 103 B GLY 184 B GLY 79 B ILE 189 B ILE 84 B LYS 159 B LYS 54 B LEU 160 B LEU 55 B THR 175 B THR 70 B GLU 179 B GLU 74 B LEU 165 B LEU 60 B GLU 170 B GLU 65 B MET 146 B MET 41 B TRP 152 B TRP 47 B VAL 198 B VAL 93 B PRO 199 B PRO 94 BINDING SITE FOR RESIDUE MG A 501 A MG 501 Software 6 BINDING SITE FOR RESIDUE K A 502 A K 502 Software 5 BINDING SITE FOR RESIDUE K A 503 A K 503 Software 5 BINDING SITE FOR RESIDUE RED B 373 B RED 373 Software 3 BINDING SITE FOR RESIDUE ADP A 504 A ADP 504 Software 16 A GLU 247 A GLU 260 6 1_555 A LYS 250 A LYS 263 6 1_555 A ASN 251 A ASN 264 6 1_555 A ADP 504 F ADP 6 1_555 A HOH 544 H HOH 6 1_555 A HOH 560 H HOH 6 1_555 A LEU 300 A LEU 313 5 1_555 A ASN 302 A ASN 315 5 1_555 A SER 306 A SER 319 5 1_555 A GLY 325 A GLY 338 5 1_555 A ADP 504 F ADP 5 1_555 A SER 20 A SER 33 5 1_555 A ARG 21 A ARG 34 5 1_555 A PHE 22 A PHE 35 5 1_555 A ASN 59 A ASN 72 5 1_555 A PHE 372 A PHE 385 5 1_555 A SER 45 A SER 58 3 1_555 A PHE 48 A PHE 61 3 1_555 B LYS 173 B LYS 68 3 1_555 A ASN 251 A ASN 264 16 1_555 A ARG 254 A ARG 267 16 1_555 A ALA 255 A ALA 268 16 1_555 A ASP 287 A ASP 300 16 1_555 A VAL 292 A VAL 305 16 1_555 A LEU 300 A LEU 313 16 1_555 A PHE 324 A PHE 337 16 1_555 A GLY 325 A GLY 338 16 1_555 A LEU 328 A LEU 341 16 1_555 A THR 352 A THR 365 16 1_555 A MG 501 C MG 16 1_555 A K 502 D K 16 1_555 A HOH 514 H HOH 16 1_555 A HOH 531 H HOH 16 1_555 A HOH 544 H HOH 16 1_555 A HOH 560 H HOH 16 1_555 179 P 65 2 2