1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Arac, D.
Dulubova, I.
Pei, J.
Huryeva, I.
Grishin, N.V.
Rizo, J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
346
589
601
10.1016/j.jmb.2004.12.004
15670607
Three-dimensional Structure of the rSly1 N-terminal Domain Reveals a Conformational Change Induced by Binding to Syntaxin 5.
2005
10.2210/pdb1y9j/pdb
pdb_00001y9j
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
17678.289
Sec1 family domain containing protein 1
N-terminal domain
1
man
polymer
Syntaxin binding protein 1- like 2, Vesicle transport-related protein Ra410, Sly1p
no
no
GSPGISGGGGGILVGSKMAASIRERQTVALKRMLNFNVPHVKNSPGEPVWKVLIYDRFGQDIISPLLSVKELRDMGITLH
LLLHSDRDPIRDVPAVYFVMPTEENIDRLCQDLRNQLYESYYLNFISAISRSKLEDIANAALAANAVTQVAKVFDQYLN
GSPGISGGGGGILVGSKMAASIRERQTVALKRMLNFNVPHVKNSPGEPVWKVLIYDRFGQDIISPLLSVKELRDMGITLH
LLLHSDRDPIRDVPAVYFVMPTEENIDRLCQDLRNQLYESYYLNFISAISRSKLEDIANAALAANAVTQVAKVFDQYLN
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Norway rat
Rattus
Escherichia
sample
Scfd1, Ra410, Sly1, Stxbp1l2
10116
Rattus norvegicus
562
Escherichia coli
BL21 competent cells
plasmid
PGEX-KG
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2005-02-15
1
1
2008-04-30
1
2
2011-07-13
1
3
2022-03-02
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
RCSB
Y
RCSB
2004-12-15
REL
REL
This structure was determined using standard triple resonance techniques
structures with the lowest energy
1400
20
2D NOESY
3D_15N-separated_NOESY
3D_13C-separated_NOESY
200 mM KCl
5.7
ambient
300
K
A total of 2493 restraints were used for the final calculations, including 2133 NOEs (of which 738 were long-range NOEs), 132 hydrogen bond restraints and 228 torsion angle restraints.
torsion angle dynamics
1
lowest energy
1.2 mM Sly1 N-terminal domain U-15N, 20 mM MES(pH 5.7), 200 mM KCl, 1 mM DTT
20 mM MES(pH 5.7), 200 mM KCl, 1 mM DTT
1.2 mM Sly1 N-terminal domain U-15N,13C, 20 mM MES(pH 5.7), 200 mM KCl, 1 mM DTT
20 mM MES(pH 5.7), 200 mM KCl, 1 mM DTT
1 mM Sly1 N-terminal domain U-10%13C, 20 mM MES(pH 5.7), 200 mM KCl, 1 mM DTT
20 mM MES(pH 5.7), 200 mM KCl, 1 mM DTT
Varian
collection
VNMR
6.1C
Delaglio
processing
NMRPipe
2.3
Johnson
data analysis
NMRView
4.1.2
Delaglio
data analysis
TALOS
2003.027.13.05
Brunger
refinement
CNS
0.9
600
Varian
INOVA
500
Varian
INOVA
n
1
-11
A
n
2
-10
A
n
3
-9
A
n
4
-8
A
n
5
-7
A
n
6
-6
A
n
7
-5
A
n
8
-4
A
n
9
-3
A
n
10
-2
A
n
11
-1
A
n
12
0
A
n
13
1
A
n
14
2
A
n
15
3
A
n
16
4
A
n
17
5
A
n
18
6
A
n
19
7
A
ALA
8
n
20
ALA
8
A
SER
9
n
21
SER
9
A
ILE
10
n
22
ILE
10
A
ARG
11
n
23
ARG
11
A
GLU
12
n
24
GLU
12
A
ARG
13
n
25
ARG
13
A
GLN
14
n
26
GLN
14
A
THR
15
n
27
THR
15
A
VAL
16
n
28
VAL
16
A
ALA
17
n
29
ALA
17
A
LEU
18
n
30
LEU
18
A
LYS
19
n
31
LYS
19
A
ARG
20
n
32
ARG
20
A
MET
21
n
33
MET
21
A
LEU
22
n
34
LEU
22
A
ASN
23
n
35
ASN
23
A
PHE
24
n
36
PHE
24
A
ASN
25
n
37
ASN
25
A
VAL
26
n
38
VAL
26
A
PRO
27
n
39
PRO
27
A
HIS
28
n
40
HIS
28
A
VAL
29
n
41
VAL
29
A
LYS
30
n
42
LYS
30
A
ASN
31
n
43
ASN
31
A
SER
32
n
44
SER
32
A
PRO
33
n
45
PRO
33
A
GLY
34
n
46
GLY
34
A
GLU
35
n
47
GLU
35
A
PRO
36
n
48
PRO
36
A
VAL
37
n
49
VAL
37
A
TRP
38
n
50
TRP
38
A
LYS
39
n
51
LYS
39
A
VAL
40
n
52
VAL
40
A
LEU
41
n
53
LEU
41
A
ILE
42
n
54
ILE
42
A
TYR
43
n
55
TYR
43
A
ASP
44
n
56
ASP
44
A
ARG
45
n
57
ARG
45
A
PHE
46
n
58
PHE
46
A
GLY
47
n
59
GLY
47
A
GLN
48
n
60
GLN
48
A
ASP
49
n
61
ASP
49
A
ILE
50
n
62
ILE
50
A
ILE
51
n
63
ILE
51
A
SER
52
n
64
SER
52
A
PRO
53
n
65
PRO
53
A
LEU
54
n
66
LEU
54
A
LEU
55
n
67
LEU
55
A
SER
56
n
68
SER
56
A
VAL
57
n
69
VAL
57
A
LYS
58
n
70
LYS
58
A
GLU
59
n
71
GLU
59
A
LEU
60
n
72
LEU
60
A
ARG
61
n
73
ARG
61
A
ASP
62
n
74
ASP
62
A
MET
63
n
75
MET
63
A
GLY
64
n
76
GLY
64
A
ILE
65
n
77
ILE
65
A
THR
66
n
78
THR
66
A
LEU
67
n
79
LEU
67
A
HIS
68
n
80
HIS
68
A
LEU
69
n
81
LEU
69
A
LEU
70
n
82
LEU
70
A
LEU
71
n
83
LEU
71
A
HIS
72
n
84
HIS
72
A
SER
73
n
85
SER
73
A
ASP
74
n
86
ASP
74
A
ARG
75
n
87
ARG
75
A
ASP
76
n
88
ASP
76
A
PRO
77
n
89
PRO
77
A
ILE
78
n
90
ILE
78
A
ARG
79
n
91
ARG
79
A
ASP
80
n
92
ASP
80
A
VAL
81
n
93
VAL
81
A
PRO
82
n
94
PRO
82
A
ALA
83
n
95
ALA
83
A
VAL
84
n
96
VAL
84
A
TYR
85
n
97
TYR
85
A
PHE
86
n
98
PHE
86
A
VAL
87
n
99
VAL
87
A
MET
88
n
100
MET
88
A
PRO
89
n
101
PRO
89
A
THR
90
n
102
THR
90
A
GLU
91
n
103
GLU
91
A
GLU
92
n
104
GLU
92
A
ASN
93
n
105
ASN
93
A
ILE
94
n
106
ILE
94
A
ASP
95
n
107
ASP
95
A
ARG
96
n
108
ARG
96
A
LEU
97
n
109
LEU
97
A
CYS
98
n
110
CYS
98
A
GLN
99
n
111
GLN
99
A
ASP
100
n
112
ASP
100
A
LEU
101
n
113
LEU
101
A
ARG
102
n
114
ARG
102
A
ASN
103
n
115
ASN
103
A
GLN
104
n
116
GLN
104
A
LEU
105
n
117
LEU
105
A
TYR
106
n
118
TYR
106
A
GLU
107
n
119
GLU
107
A
SER
108
n
120
SER
108
A
TYR
109
n
121
TYR
109
A
TYR
110
n
122
TYR
110
A
LEU
111
n
123
LEU
111
A
ASN
112
n
124
ASN
112
A
PHE
113
n
125
PHE
113
A
ILE
114
n
126
ILE
114
A
SER
115
n
127
SER
115
A
ALA
116
n
128
ALA
116
A
ILE
117
n
129
ILE
117
A
SER
118
n
130
SER
118
A
ARG
119
n
131
ARG
119
A
SER
120
n
132
SER
120
A
LYS
121
n
133
LYS
121
A
LEU
122
n
134
LEU
122
A
GLU
123
n
135
GLU
123
A
ASP
124
n
136
ASP
124
A
ILE
125
n
137
ILE
125
A
ALA
126
n
138
ALA
126
A
ASN
127
n
139
ASN
127
A
ALA
128
n
140
ALA
128
A
ALA
129
n
141
ALA
129
A
LEU
130
n
142
LEU
130
A
ALA
131
n
143
ALA
131
A
ALA
132
n
144
ALA
132
A
ASN
133
n
145
ASN
133
A
ALA
134
n
146
ALA
134
A
VAL
135
n
147
VAL
135
A
THR
136
n
148
THR
136
A
GLN
137
n
149
GLN
137
A
VAL
138
n
150
VAL
138
A
ALA
139
n
151
ALA
139
A
LYS
140
n
152
LYS
140
A
VAL
141
n
153
VAL
141
A
PHE
142
n
154
PHE
142
A
ASP
143
n
155
ASP
143
A
GLN
144
n
156
GLN
144
A
TYR
145
n
157
TYR
145
A
LEU
146
n
158
LEU
146
A
ASN
147
n
159
ASN
147
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LEU
41
A
N
LEU
53
A
O
LEU
67
A
O
LEU
79
A
N
TYR
85
A
N
TYR
97
A
O
TYR
110
A
O
TYR
122
A
N
LEU
111
A
N
LEU
123
A
O
ALA
139
A
O
ALA
151
1
A
GLY
-11
A
GLY
1
1
Y
1
A
SER
-10
A
SER
2
1
Y
1
A
PRO
-9
A
PRO
3
1
Y
1
A
GLY
-8
A
GLY
4
1
Y
1
A
ILE
-7
A
ILE
5
1
Y
1
A
SER
-6
A
SER
6
1
Y
1
A
GLY
-5
A
GLY
7
1
Y
1
A
GLY
-4
A
GLY
8
1
Y
1
A
GLY
-3
A
GLY
9
1
Y
1
A
GLY
-2
A
GLY
10
1
Y
1
A
GLY
-1
A
GLY
11
1
Y
1
A
ILE
0
A
ILE
12
1
Y
1
A
LEU
1
A
LEU
13
1
Y
1
A
VAL
2
A
VAL
14
1
Y
1
A
GLY
3
A
GLY
15
1
Y
1
A
SER
4
A
SER
16
1
Y
1
A
LYS
5
A
LYS
17
1
Y
1
A
MET
6
A
MET
18
1
Y
1
A
ALA
7
A
ALA
19
1
Y
2
A
GLY
-11
A
GLY
1
1
Y
2
A
SER
-10
A
SER
2
1
Y
2
A
PRO
-9
A
PRO
3
1
Y
2
A
GLY
-8
A
GLY
4
1
Y
2
A
ILE
-7
A
ILE
5
1
Y
2
A
SER
-6
A
SER
6
1
Y
2
A
GLY
-5
A
GLY
7
1
Y
2
A
GLY
-4
A
GLY
8
1
Y
2
A
GLY
-3
A
GLY
9
1
Y
2
A
GLY
-2
A
GLY
10
1
Y
2
A
GLY
-1
A
GLY
11
1
Y
2
A
ILE
0
A
ILE
12
1
Y
2
A
LEU
1
A
LEU
13
1
Y
2
A
VAL
2
A
VAL
14
1
Y
2
A
GLY
3
A
GLY
15
1
Y
2
A
SER
4
A
SER
16
1
Y
2
A
LYS
5
A
LYS
17
1
Y
2
A
MET
6
A
MET
18
1
Y
2
A
ALA
7
A
ALA
19
1
Y
3
A
GLY
-11
A
GLY
1
1
Y
3
A
SER
-10
A
SER
2
1
Y
3
A
PRO
-9
A
PRO
3
1
Y
3
A
GLY
-8
A
GLY
4
1
Y
3
A
ILE
-7
A
ILE
5
1
Y
3
A
SER
-6
A
SER
6
1
Y
3
A
GLY
-5
A
GLY
7
1
Y
3
A
GLY
-4
A
GLY
8
1
Y
3
A
GLY
-3
A
GLY
9
1
Y
3
A
GLY
-2
A
GLY
10
1
Y
3
A
GLY
-1
A
GLY
11
1
Y
3
A
ILE
0
A
ILE
12
1
Y
3
A
LEU
1
A
LEU
13
1
Y
3
A
VAL
2
A
VAL
14
1
Y
3
A
GLY
3
A
GLY
15
1
Y
3
A
SER
4
A
SER
16
1
Y
3
A
LYS
5
A
LYS
17
1
Y
3
A
MET
6
A
MET
18
1
Y
3
A
ALA
7
A
ALA
19
1
Y
4
A
GLY
-11
A
GLY
1
1
Y
4
A
SER
-10
A
SER
2
1
Y
4
A
PRO
-9
A
PRO
3
1
Y
4
A
GLY
-8
A
GLY
4
1
Y
4
A
ILE
-7
A
ILE
5
1
Y
4
A
SER
-6
A
SER
6
1
Y
4
A
GLY
-5
A
GLY
7
1
Y
4
A
GLY
-4
A
GLY
8
1
Y
4
A
GLY
-3
A
GLY
9
1
Y
4
A
GLY
-2
A
GLY
10
1
Y
4
A
GLY
-1
A
GLY
11
1
Y
4
A
ILE
0
A
ILE
12
1
Y
4
A
LEU
1
A
LEU
13
1
Y
4
A
VAL
2
A
VAL
14
1
Y
4
A
GLY
3
A
GLY
15
1
Y
4
A
SER
4
A
SER
16
1
Y
4
A
LYS
5
A
LYS
17
1
Y
4
A
MET
6
A
MET
18
1
Y
4
A
ALA
7
A
ALA
19
1
Y
5
A
GLY
-11
A
GLY
1
1
Y
5
A
SER
-10
A
SER
2
1
Y
5
A
PRO
-9
A
PRO
3
1
Y
5
A
GLY
-8
A
GLY
4
1
Y
5
A
ILE
-7
A
ILE
5
1
Y
5
A
SER
-6
A
SER
6
1
Y
5
A
GLY
-5
A
GLY
7
1
Y
5
A
GLY
-4
A
GLY
8
1
Y
5
A
GLY
-3
A
GLY
9
1
Y
5
A
GLY
-2
A
GLY
10
1
Y
5
A
GLY
-1
A
GLY
11
1
Y
5
A
ILE
0
A
ILE
12
1
Y
5
A
LEU
1
A
LEU
13
1
Y
5
A
VAL
2
A
VAL
14
1
Y
5
A
GLY
3
A
GLY
15
1
Y
5
A
SER
4
A
SER
16
1
Y
5
A
LYS
5
A
LYS
17
1
Y
5
A
MET
6
A
MET
18
1
Y
5
A
ALA
7
A
ALA
19
1
Y
6
A
GLY
-11
A
GLY
1
1
Y
6
A
SER
-10
A
SER
2
1
Y
6
A
PRO
-9
A
PRO
3
1
Y
6
A
GLY
-8
A
GLY
4
1
Y
6
A
ILE
-7
A
ILE
5
1
Y
6
A
SER
-6
A
SER
6
1
Y
6
A
GLY
-5
A
GLY
7
1
Y
6
A
GLY
-4
A
GLY
8
1
Y
6
A
GLY
-3
A
GLY
9
1
Y
6
A
GLY
-2
A
GLY
10
1
Y
6
A
GLY
-1
A
GLY
11
1
Y
6
A
ILE
0
A
ILE
12
1
Y
6
A
LEU
1
A
LEU
13
1
Y
6
A
VAL
2
A
VAL
14
1
Y
6
A
GLY
3
A
GLY
15
1
Y
6
A
SER
4
A
SER
16
1
Y
6
A
LYS
5
A
LYS
17
1
Y
6
A
MET
6
A
MET
18
1
Y
6
A
ALA
7
A
ALA
19
1
Y
7
A
GLY
-11
A
GLY
1
1
Y
7
A
SER
-10
A
SER
2
1
Y
7
A
PRO
-9
A
PRO
3
1
Y
7
A
GLY
-8
A
GLY
4
1
Y
7
A
ILE
-7
A
ILE
5
1
Y
7
A
SER
-6
A
SER
6
1
Y
7
A
GLY
-5
A
GLY
7
1
Y
7
A
GLY
-4
A
GLY
8
1
Y
7
A
GLY
-3
A
GLY
9
1
Y
7
A
GLY
-2
A
GLY
10
1
Y
7
A
GLY
-1
A
GLY
11
1
Y
7
A
ILE
0
A
ILE
12
1
Y
7
A
LEU
1
A
LEU
13
1
Y
7
A
VAL
2
A
VAL
14
1
Y
7
A
GLY
3
A
GLY
15
1
Y
7
A
SER
4
A
SER
16
1
Y
7
A
LYS
5
A
LYS
17
1
Y
7
A
MET
6
A
MET
18
1
Y
7
A
ALA
7
A
ALA
19
1
Y
8
A
GLY
-11
A
GLY
1
1
Y
8
A
SER
-10
A
SER
2
1
Y
8
A
PRO
-9
A
PRO
3
1
Y
8
A
GLY
-8
A
GLY
4
1
Y
8
A
ILE
-7
A
ILE
5
1
Y
8
A
SER
-6
A
SER
6
1
Y
8
A
GLY
-5
A
GLY
7
1
Y
8
A
GLY
-4
A
GLY
8
1
Y
8
A
GLY
-3
A
GLY
9
1
Y
8
A
GLY
-2
A
GLY
10
1
Y
8
A
GLY
-1
A
GLY
11
1
Y
8
A
ILE
0
A
ILE
12
1
Y
8
A
LEU
1
A
LEU
13
1
Y
8
A
VAL
2
A
VAL
14
1
Y
8
A
GLY
3
A
GLY
15
1
Y
8
A
SER
4
A
SER
16
1
Y
8
A
LYS
5
A
LYS
17
1
Y
8
A
MET
6
A
MET
18
1
Y
8
A
ALA
7
A
ALA
19
1
Y
9
A
GLY
-11
A
GLY
1
1
Y
9
A
SER
-10
A
SER
2
1
Y
9
A
PRO
-9
A
PRO
3
1
Y
9
A
GLY
-8
A
GLY
4
1
Y
9
A
ILE
-7
A
ILE
5
1
Y
9
A
SER
-6
A
SER
6
1
Y
9
A
GLY
-5
A
GLY
7
1
Y
9
A
GLY
-4
A
GLY
8
1
Y
9
A
GLY
-3
A
GLY
9
1
Y
9
A
GLY
-2
A
GLY
10
1
Y
9
A
GLY
-1
A
GLY
11
1
Y
9
A
ILE
0
A
ILE
12
1
Y
9
A
LEU
1
A
LEU
13
1
Y
9
A
VAL
2
A
VAL
14
1
Y
9
A
GLY
3
A
GLY
15
1
Y
9
A
SER
4
A
SER
16
1
Y
9
A
LYS
5
A
LYS
17
1
Y
9
A
MET
6
A
MET
18
1
Y
9
A
ALA
7
A
ALA
19
1
Y
10
A
GLY
-11
A
GLY
1
1
Y
10
A
SER
-10
A
SER
2
1
Y
10
A
PRO
-9
A
PRO
3
1
Y
10
A
GLY
-8
A
GLY
4
1
Y
10
A
ILE
-7
A
ILE
5
1
Y
10
A
SER
-6
A
SER
6
1
Y
10
A
GLY
-5
A
GLY
7
1
Y
10
A
GLY
-4
A
GLY
8
1
Y
10
A
GLY
-3
A
GLY
9
1
Y
10
A
GLY
-2
A
GLY
10
1
Y
10
A
GLY
-1
A
GLY
11
1
Y
10
A
ILE
0
A
ILE
12
1
Y
10
A
LEU
1
A
LEU
13
1
Y
10
A
VAL
2
A
VAL
14
1
Y
10
A
GLY
3
A
GLY
15
1
Y
10
A
SER
4
A
SER
16
1
Y
10
A
LYS
5
A
LYS
17
1
Y
10
A
MET
6
A
MET
18
1
Y
10
A
ALA
7
A
ALA
19
1
Y
11
A
GLY
-11
A
GLY
1
1
Y
11
A
SER
-10
A
SER
2
1
Y
11
A
PRO
-9
A
PRO
3
1
Y
11
A
GLY
-8
A
GLY
4
1
Y
11
A
ILE
-7
A
ILE
5
1
Y
11
A
SER
-6
A
SER
6
1
Y
11
A
GLY
-5
A
GLY
7
1
Y
11
A
GLY
-4
A
GLY
8
1
Y
11
A
GLY
-3
A
GLY
9
1
Y
11
A
GLY
-2
A
GLY
10
1
Y
11
A
GLY
-1
A
GLY
11
1
Y
11
A
ILE
0
A
ILE
12
1
Y
11
A
LEU
1
A
LEU
13
1
Y
11
A
VAL
2
A
VAL
14
1
Y
11
A
GLY
3
A
GLY
15
1
Y
11
A
SER
4
A
SER
16
1
Y
11
A
LYS
5
A
LYS
17
1
Y
11
A
MET
6
A
MET
18
1
Y
11
A
ALA
7
A
ALA
19
1
Y
12
A
GLY
-11
A
GLY
1
1
Y
12
A
SER
-10
A
SER
2
1
Y
12
A
PRO
-9
A
PRO
3
1
Y
12
A
GLY
-8
A
GLY
4
1
Y
12
A
ILE
-7
A
ILE
5
1
Y
12
A
SER
-6
A
SER
6
1
Y
12
A
GLY
-5
A
GLY
7
1
Y
12
A
GLY
-4
A
GLY
8
1
Y
12
A
GLY
-3
A
GLY
9
1
Y
12
A
GLY
-2
A
GLY
10
1
Y
12
A
GLY
-1
A
GLY
11
1
Y
12
A
ILE
0
A
ILE
12
1
Y
12
A
LEU
1
A
LEU
13
1
Y
12
A
VAL
2
A
VAL
14
1
Y
12
A
GLY
3
A
GLY
15
1
Y
12
A
SER
4
A
SER
16
1
Y
12
A
LYS
5
A
LYS
17
1
Y
12
A
MET
6
A
MET
18
1
Y
12
A
ALA
7
A
ALA
19
1
Y
13
A
GLY
-11
A
GLY
1
1
Y
13
A
SER
-10
A
SER
2
1
Y
13
A
PRO
-9
A
PRO
3
1
Y
13
A
GLY
-8
A
GLY
4
1
Y
13
A
ILE
-7
A
ILE
5
1
Y
13
A
SER
-6
A
SER
6
1
Y
13
A
GLY
-5
A
GLY
7
1
Y
13
A
GLY
-4
A
GLY
8
1
Y
13
A
GLY
-3
A
GLY
9
1
Y
13
A
GLY
-2
A
GLY
10
1
Y
13
A
GLY
-1
A
GLY
11
1
Y
13
A
ILE
0
A
ILE
12
1
Y
13
A
LEU
1
A
LEU
13
1
Y
13
A
VAL
2
A
VAL
14
1
Y
13
A
GLY
3
A
GLY
15
1
Y
13
A
SER
4
A
SER
16
1
Y
13
A
LYS
5
A
LYS
17
1
Y
13
A
MET
6
A
MET
18
1
Y
13
A
ALA
7
A
ALA
19
1
Y
14
A
GLY
-11
A
GLY
1
1
Y
14
A
SER
-10
A
SER
2
1
Y
14
A
PRO
-9
A
PRO
3
1
Y
14
A
GLY
-8
A
GLY
4
1
Y
14
A
ILE
-7
A
ILE
5
1
Y
14
A
SER
-6
A
SER
6
1
Y
14
A
GLY
-5
A
GLY
7
1
Y
14
A
GLY
-4
A
GLY
8
1
Y
14
A
GLY
-3
A
GLY
9
1
Y
14
A
GLY
-2
A
GLY
10
1
Y
14
A
GLY
-1
A
GLY
11
1
Y
14
A
ILE
0
A
ILE
12
1
Y
14
A
LEU
1
A
LEU
13
1
Y
14
A
VAL
2
A
VAL
14
1
Y
14
A
GLY
3
A
GLY
15
1
Y
14
A
SER
4
A
SER
16
1
Y
14
A
LYS
5
A
LYS
17
1
Y
14
A
MET
6
A
MET
18
1
Y
14
A
ALA
7
A
ALA
19
1
Y
15
A
GLY
-11
A
GLY
1
1
Y
15
A
SER
-10
A
SER
2
1
Y
15
A
PRO
-9
A
PRO
3
1
Y
15
A
GLY
-8
A
GLY
4
1
Y
15
A
ILE
-7
A
ILE
5
1
Y
15
A
SER
-6
A
SER
6
1
Y
15
A
GLY
-5
A
GLY
7
1
Y
15
A
GLY
-4
A
GLY
8
1
Y
15
A
GLY
-3
A
GLY
9
1
Y
15
A
GLY
-2
A
GLY
10
1
Y
15
A
GLY
-1
A
GLY
11
1
Y
15
A
ILE
0
A
ILE
12
1
Y
15
A
LEU
1
A
LEU
13
1
Y
15
A
VAL
2
A
VAL
14
1
Y
15
A
GLY
3
A
GLY
15
1
Y
15
A
SER
4
A
SER
16
1
Y
15
A
LYS
5
A
LYS
17
1
Y
15
A
MET
6
A
MET
18
1
Y
15
A
ALA
7
A
ALA
19
1
Y
16
A
GLY
-11
A
GLY
1
1
Y
16
A
SER
-10
A
SER
2
1
Y
16
A
PRO
-9
A
PRO
3
1
Y
16
A
GLY
-8
A
GLY
4
1
Y
16
A
ILE
-7
A
ILE
5
1
Y
16
A
SER
-6
A
SER
6
1
Y
16
A
GLY
-5
A
GLY
7
1
Y
16
A
GLY
-4
A
GLY
8
1
Y
16
A
GLY
-3
A
GLY
9
1
Y
16
A
GLY
-2
A
GLY
10
1
Y
16
A
GLY
-1
A
GLY
11
1
Y
16
A
ILE
0
A
ILE
12
1
Y
16
A
LEU
1
A
LEU
13
1
Y
16
A
VAL
2
A
VAL
14
1
Y
16
A
GLY
3
A
GLY
15
1
Y
16
A
SER
4
A
SER
16
1
Y
16
A
LYS
5
A
LYS
17
1
Y
16
A
MET
6
A
MET
18
1
Y
16
A
ALA
7
A
ALA
19
1
Y
17
A
GLY
-11
A
GLY
1
1
Y
17
A
SER
-10
A
SER
2
1
Y
17
A
PRO
-9
A
PRO
3
1
Y
17
A
GLY
-8
A
GLY
4
1
Y
17
A
ILE
-7
A
ILE
5
1
Y
17
A
SER
-6
A
SER
6
1
Y
17
A
GLY
-5
A
GLY
7
1
Y
17
A
GLY
-4
A
GLY
8
1
Y
17
A
GLY
-3
A
GLY
9
1
Y
17
A
GLY
-2
A
GLY
10
1
Y
17
A
GLY
-1
A
GLY
11
1
Y
17
A
ILE
0
A
ILE
12
1
Y
17
A
LEU
1
A
LEU
13
1
Y
17
A
VAL
2
A
VAL
14
1
Y
17
A
GLY
3
A
GLY
15
1
Y
17
A
SER
4
A
SER
16
1
Y
17
A
LYS
5
A
LYS
17
1
Y
17
A
MET
6
A
MET
18
1
Y
17
A
ALA
7
A
ALA
19
1
Y
18
A
GLY
-11
A
GLY
1
1
Y
18
A
SER
-10
A
SER
2
1
Y
18
A
PRO
-9
A
PRO
3
1
Y
18
A
GLY
-8
A
GLY
4
1
Y
18
A
ILE
-7
A
ILE
5
1
Y
18
A
SER
-6
A
SER
6
1
Y
18
A
GLY
-5
A
GLY
7
1
Y
18
A
GLY
-4
A
GLY
8
1
Y
18
A
GLY
-3
A
GLY
9
1
Y
18
A
GLY
-2
A
GLY
10
1
Y
18
A
GLY
-1
A
GLY
11
1
Y
18
A
ILE
0
A
ILE
12
1
Y
18
A
LEU
1
A
LEU
13
1
Y
18
A
VAL
2
A
VAL
14
1
Y
18
A
GLY
3
A
GLY
15
1
Y
18
A
SER
4
A
SER
16
1
Y
18
A
LYS
5
A
LYS
17
1
Y
18
A
MET
6
A
MET
18
1
Y
18
A
ALA
7
A
ALA
19
1
Y
19
A
GLY
-11
A
GLY
1
1
Y
19
A
SER
-10
A
SER
2
1
Y
19
A
PRO
-9
A
PRO
3
1
Y
19
A
GLY
-8
A
GLY
4
1
Y
19
A
ILE
-7
A
ILE
5
1
Y
19
A
SER
-6
A
SER
6
1
Y
19
A
GLY
-5
A
GLY
7
1
Y
19
A
GLY
-4
A
GLY
8
1
Y
19
A
GLY
-3
A
GLY
9
1
Y
19
A
GLY
-2
A
GLY
10
1
Y
19
A
GLY
-1
A
GLY
11
1
Y
19
A
ILE
0
A
ILE
12
1
Y
19
A
LEU
1
A
LEU
13
1
Y
19
A
VAL
2
A
VAL
14
1
Y
19
A
GLY
3
A
GLY
15
1
Y
19
A
SER
4
A
SER
16
1
Y
19
A
LYS
5
A
LYS
17
1
Y
19
A
MET
6
A
MET
18
1
Y
19
A
ALA
7
A
ALA
19
1
Y
20
A
GLY
-11
A
GLY
1
1
Y
20
A
SER
-10
A
SER
2
1
Y
20
A
PRO
-9
A
PRO
3
1
Y
20
A
GLY
-8
A
GLY
4
1
Y
20
A
ILE
-7
A
ILE
5
1
Y
20
A
SER
-6
A
SER
6
1
Y
20
A
GLY
-5
A
GLY
7
1
Y
20
A
GLY
-4
A
GLY
8
1
Y
20
A
GLY
-3
A
GLY
9
1
Y
20
A
GLY
-2
A
GLY
10
1
Y
20
A
GLY
-1
A
GLY
11
1
Y
20
A
ILE
0
A
ILE
12
1
Y
20
A
LEU
1
A
LEU
13
1
Y
20
A
VAL
2
A
VAL
14
1
Y
20
A
GLY
3
A
GLY
15
1
Y
20
A
SER
4
A
SER
16
1
Y
20
A
LYS
5
A
LYS
17
1
Y
20
A
MET
6
A
MET
18
1
Y
20
A
ALA
7
A
ALA
19
1
Y
1
A
A
H
O
ILE
LEU
78
105
1.60
2
A
A
H
O
TYR
TYR
85
110
1.59
3
A
A
H
O
TYR
TYR
85
110
1.57
5
A
A
H
O
ILE
LEU
78
105
1.59
5
A
A
HG1
OD1
THR
ASN
90
93
1.59
6
A
A
H
O
TYR
TYR
85
110
1.53
6
A
A
H
O
ILE
LEU
78
105
1.58
7
A
A
H
O
VAL
PRO
40
82
1.58
7
A
A
H
O
ILE
VAL
42
84
1.59
8
A
A
HG1
OD1
THR
ASN
90
93
1.57
10
A
A
O
H
THR
LYS
15
19
1.54
11
A
A
H
O
ILE
LEU
78
105
1.59
12
A
A
H
O
TYR
TYR
85
110
1.59
13
A
A
H
O
TYR
TYR
85
110
1.57
15
A
A
H
O
ILE
LEU
78
105
1.59
16
A
A
H
O
TYR
TYR
85
110
1.56
17
A
A
O
H
GLU
ASN
123
127
1.49
18
A
A
H
O
ILE
LEU
78
105
1.59
20
A
A
H
O
ILE
LEU
78
105
1.57
1
A
PHE
24
-54.86
97.51
1
A
PRO
27
-42.06
94.78
1
A
PRO
36
-54.04
-175.04
1
A
ASP
44
-113.55
-169.45
1
A
LEU
67
-177.38
136.64
1
A
HIS
72
-93.71
38.88
1
A
PRO
89
-75.92
48.76
1
A
TYR
109
-152.38
65.80
1
A
TYR
110
-65.00
93.73
2
A
PRO
27
-46.25
99.47
2
A
ASP
44
-103.11
-169.42
2
A
LEU
67
-175.09
136.94
2
A
HIS
72
-93.74
33.73
2
A
PRO
89
-72.70
46.47
2
A
TYR
109
-150.08
64.85
2
A
TYR
110
-58.67
90.69
2
A
ALA
139
-66.01
-179.94
3
A
ASN
23
-130.50
-44.48
3
A
ASP
44
-108.47
-169.26
3
A
LEU
67
-175.40
137.98
3
A
HIS
72
-94.93
38.51
3
A
PRO
89
-89.65
45.48
3
A
TYR
109
-150.34
63.44
3
A
TYR
110
-59.96
88.15
3
A
VAL
135
-57.46
107.44
3
A
GLN
137
-165.16
118.15
4
A
VAL
29
-67.63
98.20
4
A
PRO
36
-56.83
-163.36
4
A
ASP
44
-114.86
-169.04
4
A
LEU
67
-173.03
137.01
4
A
HIS
72
-88.41
33.46
4
A
PRO
89
-80.03
45.77
4
A
TYR
109
-151.77
67.43
4
A
TYR
110
-59.49
88.82
5
A
PRO
36
-53.29
-174.08
5
A
LEU
67
-174.73
137.69
5
A
HIS
72
-93.40
39.20
5
A
PRO
89
-93.12
43.90
5
A
TYR
109
-150.02
70.06
5
A
TYR
110
-61.11
89.61
5
A
GLN
137
-162.10
118.23
6
A
ASN
23
-134.04
-39.98
6
A
PRO
27
-54.31
101.43
6
A
ASP
44
-123.17
-169.33
6
A
LEU
67
-178.85
140.62
6
A
HIS
72
-96.61
36.84
6
A
PRO
89
-87.36
45.56
6
A
TYR
110
-61.90
89.98
6
A
GLN
137
-160.54
118.18
7
A
PRO
27
-47.08
105.79
7
A
PRO
36
-53.77
171.39
7
A
ASP
44
-108.65
-169.34
7
A
LEU
67
-174.24
137.99
7
A
HIS
72
-93.55
39.25
7
A
PRO
89
-92.12
42.94
7
A
TYR
110
-58.77
94.27
8
A
PRO
27
-55.14
105.61
8
A
ASP
44
-113.71
-168.20
8
A
LEU
67
-177.55
138.35
8
A
HIS
72
-89.20
33.91
8
A
PRO
89
-91.77
43.43
8
A
TYR
109
-113.84
76.69
8
A
TYR
110
-62.66
86.00
9
A
ASN
23
-136.65
-49.30
9
A
VAL
29
-67.51
98.48
9
A
HIS
72
-88.52
35.52
9
A
PRO
89
-83.36
44.54
9
A
TYR
109
-150.14
68.18
9
A
TYR
110
-59.66
89.09
10
A
ASN
23
-134.62
-53.49
10
A
PRO
27
-49.60
94.58
10
A
ASP
74
-48.85
101.84
10
A
PRO
89
-84.79
42.63
10
A
TYR
109
-155.31
66.96
10
A
TYR
110
-61.39
88.41
10
A
GLN
137
-161.97
118.25
10
A
ALA
139
-65.79
-179.88
11
A
PRO
27
-52.18
91.62
11
A
ASP
44
-112.21
-169.28
11
A
LEU
67
-177.50
139.93
11
A
HIS
72
-87.90
39.59
11
A
ASP
80
-170.98
31.54
11
A
PRO
89
-91.37
41.96
11
A
TYR
110
-62.34
90.79
12
A
PRO
27
-46.06
108.90
12
A
ASN
31
-94.59
-66.46
12
A
LEU
67
-179.68
137.34
12
A
HIS
72
-97.52
37.59
12
A
ASP
74
-58.14
103.00
12
A
PRO
89
-92.15
43.31
12
A
TYR
109
-153.90
71.35
12
A
TYR
110
-61.94
86.90
12
A
VAL
135
-57.89
105.26
13
A
PRO
36
-55.70
173.97
13
A
LEU
67
-178.47
137.62
13
A
HIS
72
-91.48
31.90
13
A
ASP
74
-58.21
101.89
13
A
PRO
89
-85.58
44.89
13
A
TYR
110
-65.47
90.71
13
A
GLN
137
-160.53
118.08
14
A
ASN
23
-132.50
-39.81
14
A
PRO
27
-50.56
108.57
14
A
ASP
44
-109.80
-169.19
14
A
LEU
67
-179.96
138.67
14
A
HIS
72
-95.97
35.85
14
A
ASP
74
-56.18
101.87
14
A
PRO
89
-90.40
45.68
14
A
TYR
109
-152.87
66.02
14
A
TYR
110
-59.73
87.10
15
A
ASN
23
-131.84
-41.44
15
A
PRO
36
-49.39
151.79
15
A
ASP
44
-112.53
-169.39
15
A
LEU
67
-175.80
137.72
15
A
HIS
72
-94.26
38.63
15
A
PRO
89
-82.99
44.38
15
A
TYR
110
-61.16
89.99
16
A
ASN
23
-130.83
-40.92
16
A
ASP
44
-112.15
-169.23
16
A
LEU
67
-170.27
136.11
16
A
HIS
72
-92.86
35.49
16
A
PRO
89
-75.51
45.64
16
A
TYR
109
-151.47
61.57
16
A
TYR
110
-56.93
89.65
16
A
ALA
116
-66.38
99.85
17
A
ASN
23
-133.06
-34.71
17
A
ASP
44
-125.32
-169.15
17
A
LEU
67
-175.24
137.73
17
A
HIS
72
-97.28
38.46
17
A
PRO
89
-80.04
47.30
17
A
TYR
109
-153.14
65.17
17
A
TYR
110
-64.38
92.14
17
A
GLN
137
-160.67
118.34
18
A
ASN
23
-135.01
-37.02
18
A
PRO
27
-46.78
94.46
18
A
LEU
67
-175.32
139.86
18
A
HIS
72
-96.99
37.80
18
A
PRO
89
-94.16
38.80
18
A
TYR
109
-151.74
64.06
18
A
TYR
110
-59.99
89.96
18
A
GLN
137
-161.85
118.36
19
A
ASN
23
-134.14
-38.90
19
A
PRO
27
-59.13
106.46
19
A
ASP
44
-119.16
-168.54
19
A
LEU
67
-177.48
136.88
19
A
HIS
72
-89.41
37.18
19
A
PRO
89
-81.43
45.24
19
A
TYR
109
-151.22
62.60
19
A
TYR
110
-58.97
87.93
20
A
ASP
44
-102.45
-168.49
20
A
LEU
67
-174.46
136.65
20
A
HIS
72
-94.90
36.46
20
A
PRO
89
-91.77
41.60
20
A
TYR
109
-150.78
69.26
20
A
TYR
110
-62.42
86.26
20
A
ASN
112
-160.15
112.29
20
A
GLN
137
-162.84
118.13
Solution structure of the rat Sly1 N-terminal domain
1
N
N
A
ALA
8
A
ALA
20
HELX_P
A
LEU
22
A
LEU
34
1
1
15
A
ASP
44
A
ASP
56
HELX_P
A
SER
52
A
SER
64
1
2
9
A
SER
56
A
SER
68
HELX_P
A
MET
63
A
MET
75
1
3
8
A
THR
90
A
THR
102
HELX_P
A
GLN
104
A
GLN
116
1
4
15
A
SER
118
A
SER
130
HELX_P
A
ALA
131
A
ALA
143
1
5
14
PROTEIN TRANSPORT
membrane traffic, Sly1, SM proteins, SNAREs, protein NMR, PROTEIN TRANSPORT
SCFD1_RAT
UNP
1
1
Q62991
MVGSKMAASIRERQTVALKRMLNFNVPHVKNSPGEPVWKVLIYDRFGQDIISPLLSVKELRDMGITLHLLLHSDRDPIRD
VPAVYFVMPTEENIDRLCQDLRNQLYESYYLNFISAISRSKLEDIANAALAANAVTQVAKVFDQYLN
1
147
1Y9J
1
147
Q62991
A
1
13
159
1
cloning artifact
GLY
-11
1Y9J
A
Q62991
UNP
1
1
cloning artifact
SER
-10
1Y9J
A
Q62991
UNP
2
1
cloning artifact
PRO
-9
1Y9J
A
Q62991
UNP
3
1
cloning artifact
GLY
-8
1Y9J
A
Q62991
UNP
4
1
cloning artifact
ILE
-7
1Y9J
A
Q62991
UNP
5
1
cloning artifact
SER
-6
1Y9J
A
Q62991
UNP
6
1
cloning artifact
GLY
-5
1Y9J
A
Q62991
UNP
7
1
cloning artifact
GLY
-4
1Y9J
A
Q62991
UNP
8
1
cloning artifact
GLY
-3
1Y9J
A
Q62991
UNP
9
1
cloning artifact
GLY
-2
1Y9J
A
Q62991
UNP
10
1
cloning artifact
GLY
-1
1Y9J
A
Q62991
UNP
11
1
cloning artifact
ILE
0
1Y9J
A
Q62991
UNP
12
1
cloning artifact
LEU
1
1Y9J
A
Q62991
UNP
13
2
3
parallel
parallel
parallel
A
LYS
39
A
LYS
51
A
TYR
43
A
TYR
55
A
ILE
65
A
ILE
77
A
LEU
70
A
LEU
82
A
VAL
84
A
VAL
96
A
VAL
87
A
VAL
99
A
SER
108
A
SER
120
A
PHE
113
A
PHE
125
A
VAL
135
A
VAL
147
A
ALA
139
A
ALA
151