0.012622
0.007287
0.000000
0.000000
0.014575
0.000000
0.000000
0.000000
0.020061
0.00000
0.00000
0.00000
Kumaran, D.
Swaminathan, S.
0000-0002-2487-9713
Burley, S.K.
New York SGX Research Center for Structural Genomics (NYSGXRC)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
79.226
79.226
49.849
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
D-METHIONINE
D-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
To be Published
0353
Crystal Structure of HTH_3 family Transcriptional Regulator from Vibrio cholerae
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
mirrors
CCD
2004-11-05
ADSC QUANTUM 315
Si 111 crystal
SINGLE WAVELENGTH
M
x-ray
1
0.979
1.0
X25
NSLS
0.979
SYNCHROTRON
NSLS BEAMLINE X25
21960.818
transcriptional regulator, HTH_3 family
1
man
polymer
65.409
ZINC ION
1
syn
non-polymer
149.211
D-METHIONINE
1
syn
non-polymer
18.015
water
120
nat
water
no
yes
(MSE)SLTDV(MSE)FKSQIANQLKNLRKSRGLSLDATAQLTGVSKA(MSE)LGQIERGESSPTIATLWKIASGLEASFS
AFFANDPQLLSSERSFPDDLN(MSE)KIHTLFPYAADTGLEIFEITLLDHHQQ(MSE)SSPHALGVIEYIHVLEGI
(MSE)KVFFDEQWHELQQGEHIRFFSDQPHGYAAVTEKAVFQNIVAYPRREGGSHHHHHH
MSLTDVMFKSQIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEASFSAFFANDPQLLSS
ERSFPDDLNMKIHTLFPYAADTGLEIFEITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFFDEQWHELQQGEHIRFFSDQ
PHGYAAVTEKAVFQNIVAYPRREGGSHHHHHH
A
NYSGXRC-T1656
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Vibrio
Escherichia
sample
666
Vibrio cholerae
562
Escherichia coli
1
2.1
41
VAPOR DIFFUSION, SITTING DROP
6.5
potassium sulfate, peg3350, xylitol, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
293
New York SGX Research Center for Structural Genomics
NYSGXRC
PSI, Protein Structure Initiative
audit_author
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Structure summary
1
0
2005-01-04
1
1
2008-04-30
1
2
2011-07-13
1
3
2021-02-03
_audit_author.identifier_ORCID
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
RCSB
Y
RCSB
2004-12-16
REL
REL
ZN
ZINC ION
MED
D-METHIONINE
HOH
water
ZN
202
2
ZN
ZN
202
A
MED
201
3
MED
MED
201
A
TIP
1
4
HOH
HOH
203
A
TIP
2
4
HOH
HOH
204
A
TIP
3
4
HOH
HOH
205
A
TIP
4
4
HOH
HOH
206
A
TIP
5
4
HOH
HOH
207
A
TIP
6
4
HOH
HOH
208
A
TIP
7
4
HOH
HOH
209
A
TIP
8
4
HOH
HOH
210
A
TIP
9
4
HOH
HOH
211
A
TIP
10
4
HOH
HOH
212
A
TIP
11
4
HOH
HOH
213
A
TIP
12
4
HOH
HOH
214
A
TIP
13
4
HOH
HOH
215
A
TIP
14
4
HOH
HOH
216
A
TIP
15
4
HOH
HOH
217
A
TIP
16
4
HOH
HOH
218
A
TIP
17
4
HOH
HOH
219
A
TIP
18
4
HOH
HOH
220
A
TIP
19
4
HOH
HOH
221
A
TIP
20
4
HOH
HOH
222
A
TIP
21
4
HOH
HOH
223
A
TIP
22
4
HOH
HOH
224
A
TIP
23
4
HOH
HOH
225
A
TIP
24
4
HOH
HOH
226
A
TIP
25
4
HOH
HOH
227
A
TIP
26
4
HOH
HOH
228
A
TIP
27
4
HOH
HOH
229
A
TIP
28
4
HOH
HOH
230
A
TIP
29
4
HOH
HOH
231
A
TIP
30
4
HOH
HOH
232
A
TIP
31
4
HOH
HOH
233
A
TIP
32
4
HOH
HOH
234
A
TIP
33
4
HOH
HOH
235
A
TIP
34
4
HOH
HOH
236
A
TIP
35
4
HOH
HOH
237
A
TIP
36
4
HOH
HOH
238
A
TIP
37
4
HOH
HOH
239
A
TIP
38
4
HOH
HOH
240
A
TIP
39
4
HOH
HOH
241
A
TIP
40
4
HOH
HOH
242
A
TIP
41
4
HOH
HOH
243
A
TIP
42
4
HOH
HOH
244
A
TIP
43
4
HOH
HOH
245
A
TIP
44
4
HOH
HOH
246
A
TIP
45
4
HOH
HOH
247
A
TIP
46
4
HOH
HOH
248
A
TIP
47
4
HOH
HOH
249
A
TIP
48
4
HOH
HOH
250
A
TIP
49
4
HOH
HOH
251
A
TIP
50
4
HOH
HOH
252
A
TIP
51
4
HOH
HOH
253
A
TIP
52
4
HOH
HOH
254
A
TIP
53
4
HOH
HOH
255
A
TIP
54
4
HOH
HOH
256
A
TIP
55
4
HOH
HOH
257
A
TIP
56
4
HOH
HOH
258
A
TIP
57
4
HOH
HOH
259
A
TIP
58
4
HOH
HOH
260
A
TIP
59
4
HOH
HOH
261
A
TIP
60
4
HOH
HOH
262
A
TIP
61
4
HOH
HOH
263
A
TIP
62
4
HOH
HOH
264
A
TIP
63
4
HOH
HOH
265
A
TIP
64
4
HOH
HOH
266
A
TIP
65
4
HOH
HOH
267
A
TIP
66
4
HOH
HOH
268
A
TIP
67
4
HOH
HOH
269
A
TIP
68
4
HOH
HOH
270
A
TIP
69
4
HOH
HOH
271
A
TIP
70
4
HOH
HOH
272
A
TIP
71
4
HOH
HOH
273
A
TIP
72
4
HOH
HOH
274
A
TIP
73
4
HOH
HOH
275
A
TIP
74
4
HOH
HOH
276
A
TIP
75
4
HOH
HOH
277
A
TIP
76
4
HOH
HOH
278
A
TIP
77
4
HOH
HOH
279
A
TIP
78
4
HOH
HOH
280
A
TIP
79
4
HOH
HOH
281
A
TIP
80
4
HOH
HOH
282
A
TIP
81
4
HOH
HOH
283
A
TIP
82
4
HOH
HOH
284
A
TIP
83
4
HOH
HOH
285
A
TIP
84
4
HOH
HOH
286
A
TIP
85
4
HOH
HOH
287
A
TIP
86
4
HOH
HOH
288
A
TIP
87
4
HOH
HOH
289
A
TIP
88
4
HOH
HOH
290
A
TIP
89
4
HOH
HOH
291
A
TIP
90
4
HOH
HOH
292
A
TIP
91
4
HOH
HOH
293
A
TIP
92
4
HOH
HOH
294
A
TIP
93
4
HOH
HOH
295
A
TIP
94
4
HOH
HOH
296
A
TIP
95
4
HOH
HOH
297
A
TIP
96
4
HOH
HOH
298
A
TIP
97
4
HOH
HOH
299
A
TIP
98
4
HOH
HOH
300
A
TIP
99
4
HOH
HOH
301
A
TIP
100
4
HOH
HOH
302
A
TIP
101
4
HOH
HOH
303
A
TIP
102
4
HOH
HOH
304
A
TIP
103
4
HOH
HOH
305
A
TIP
104
4
HOH
HOH
306
A
TIP
105
4
HOH
HOH
307
A
TIP
106
4
HOH
HOH
308
A
TIP
107
4
HOH
HOH
309
A
TIP
108
4
HOH
HOH
310
A
TIP
109
4
HOH
HOH
311
A
TIP
110
4
HOH
HOH
312
A
TIP
111
4
HOH
HOH
313
A
TIP
112
4
HOH
HOH
314
A
TIP
113
4
HOH
HOH
315
A
TIP
114
4
HOH
HOH
316
A
TIP
115
4
HOH
HOH
317
A
TIP
116
4
HOH
HOH
318
A
TIP
117
4
HOH
HOH
319
A
TIP
118
4
HOH
HOH
320
A
TIP
119
4
HOH
HOH
321
A
TIP
120
4
HOH
HOH
322
A
n
1
1
A
n
2
2
A
n
3
3
A
THR
4
n
4
THR
4
A
ASP
5
n
5
ASP
5
A
VAL
6
n
6
VAL
6
A
MSE
7
n
7
MSE
7
A
PHE
8
n
8
PHE
8
A
LYS
9
n
9
LYS
9
A
SER
10
n
10
SER
10
A
GLN
11
n
11
GLN
11
A
ILE
12
n
12
ILE
12
A
ALA
13
n
13
ALA
13
A
ASN
14
n
14
ASN
14
A
GLN
15
n
15
GLN
15
A
LEU
16
n
16
LEU
16
A
LYS
17
n
17
LYS
17
A
ASN
18
n
18
ASN
18
A
LEU
19
n
19
LEU
19
A
ARG
20
n
20
ARG
20
A
LYS
21
n
21
LYS
21
A
SER
22
n
22
SER
22
A
ARG
23
n
23
ARG
23
A
GLY
24
n
24
GLY
24
A
LEU
25
n
25
LEU
25
A
SER
26
n
26
SER
26
A
LEU
27
n
27
LEU
27
A
ASP
28
n
28
ASP
28
A
ALA
29
n
29
ALA
29
A
THR
30
n
30
THR
30
A
ALA
31
n
31
ALA
31
A
GLN
32
n
32
GLN
32
A
LEU
33
n
33
LEU
33
A
THR
34
n
34
THR
34
A
GLY
35
n
35
GLY
35
A
VAL
36
n
36
VAL
36
A
SER
37
n
37
SER
37
A
LYS
38
n
38
LYS
38
A
ALA
39
n
39
ALA
39
A
MSE
40
n
40
MSE
40
A
LEU
41
n
41
LEU
41
A
GLY
42
n
42
GLY
42
A
GLN
43
n
43
GLN
43
A
ILE
44
n
44
ILE
44
A
GLU
45
n
45
GLU
45
A
ARG
46
n
46
ARG
46
A
GLY
47
n
47
GLY
47
A
GLU
48
n
48
GLU
48
A
SER
49
n
49
SER
49
A
SER
50
n
50
SER
50
A
PRO
51
n
51
PRO
51
A
THR
52
n
52
THR
52
A
ILE
53
n
53
ILE
53
A
ALA
54
n
54
ALA
54
A
THR
55
n
55
THR
55
A
LEU
56
n
56
LEU
56
A
TRP
57
n
57
TRP
57
A
LYS
58
n
58
LYS
58
A
ILE
59
n
59
ILE
59
A
ALA
60
n
60
ALA
60
A
SER
61
n
61
SER
61
A
GLY
62
n
62
GLY
62
A
LEU
63
n
63
LEU
63
A
GLU
64
n
64
GLU
64
A
ALA
65
n
65
ALA
65
A
SER
66
n
66
SER
66
A
PHE
67
n
67
PHE
67
A
SER
68
n
68
SER
68
A
ALA
69
n
69
ALA
69
A
PHE
70
n
70
PHE
70
A
PHE
71
n
71
PHE
71
A
ALA
72
n
72
ALA
72
A
ASN
73
n
73
ASN
73
A
ASP
74
n
74
ASP
74
A
PRO
75
n
75
PRO
75
A
GLN
76
n
76
GLN
76
A
LEU
77
n
77
LEU
77
A
LEU
78
n
78
LEU
78
A
SER
79
n
79
SER
79
A
SER
80
n
80
SER
80
A
GLU
81
n
81
GLU
81
A
ARG
82
n
82
ARG
82
A
SER
83
n
83
SER
83
A
PHE
84
n
84
PHE
84
A
PRO
85
n
85
PRO
85
A
ASP
86
n
86
ASP
86
A
ASP
87
n
87
ASP
87
A
LEU
88
n
88
LEU
88
A
ASN
89
n
89
ASN
89
A
MSE
90
n
90
MSE
90
A
LYS
91
n
91
LYS
91
A
ILE
92
n
92
ILE
92
A
HIS
93
n
93
HIS
93
A
THR
94
n
94
THR
94
A
LEU
95
n
95
LEU
95
A
PHE
96
n
96
PHE
96
A
PRO
97
n
97
PRO
97
A
TYR
98
n
98
TYR
98
A
ALA
99
n
99
ALA
99
A
ALA
100
n
100
ALA
100
A
ASP
101
n
101
ASP
101
A
THR
102
n
102
THR
102
A
GLY
103
n
103
GLY
103
A
LEU
104
n
104
LEU
104
A
GLU
105
n
105
GLU
105
A
ILE
106
n
106
ILE
106
A
PHE
107
n
107
PHE
107
A
GLU
108
n
108
GLU
108
A
ILE
109
n
109
ILE
109
A
THR
110
n
110
THR
110
A
LEU
111
n
111
LEU
111
A
LEU
112
n
112
LEU
112
A
ASP
113
n
113
ASP
113
A
HIS
114
n
114
HIS
114
A
HIS
115
n
115
HIS
115
A
GLN
116
n
116
GLN
116
A
GLN
117
n
117
GLN
117
A
MSE
118
n
118
MSE
118
A
SER
119
n
119
SER
119
A
SER
120
n
120
SER
120
A
PRO
121
n
121
PRO
121
A
HIS
122
n
122
HIS
122
A
ALA
123
n
123
ALA
123
A
LEU
124
n
124
LEU
124
A
GLY
125
n
125
GLY
125
A
VAL
126
n
126
VAL
126
A
ILE
127
n
127
ILE
127
A
GLU
128
n
128
GLU
128
A
TYR
129
n
129
TYR
129
A
ILE
130
n
130
ILE
130
A
HIS
131
n
131
HIS
131
A
VAL
132
n
132
VAL
132
A
LEU
133
n
133
LEU
133
A
GLU
134
n
134
GLU
134
A
GLY
135
n
135
GLY
135
A
ILE
136
n
136
ILE
136
A
MSE
137
n
137
MSE
137
A
LYS
138
n
138
LYS
138
A
VAL
139
n
139
VAL
139
A
PHE
140
n
140
PHE
140
A
PHE
141
n
141
PHE
141
A
ASP
142
n
142
ASP
142
A
GLU
143
n
143
GLU
143
A
GLN
144
n
144
GLN
144
A
TRP
145
n
145
TRP
145
A
HIS
146
n
146
HIS
146
A
GLU
147
n
147
GLU
147
A
LEU
148
n
148
LEU
148
A
GLN
149
n
149
GLN
149
A
GLN
150
n
150
GLN
150
A
GLY
151
n
151
GLY
151
A
GLU
152
n
152
GLU
152
A
HIS
153
n
153
HIS
153
A
ILE
154
n
154
ILE
154
A
ARG
155
n
155
ARG
155
A
PHE
156
n
156
PHE
156
A
PHE
157
n
157
PHE
157
A
SER
158
n
158
SER
158
A
ASP
159
n
159
ASP
159
A
GLN
160
n
160
GLN
160
A
PRO
161
n
161
PRO
161
A
HIS
162
n
162
HIS
162
A
GLY
163
n
163
GLY
163
A
TYR
164
n
164
TYR
164
A
ALA
165
n
165
ALA
165
A
ALA
166
n
166
ALA
166
A
VAL
167
n
167
VAL
167
A
THR
168
n
168
THR
168
A
GLU
169
n
169
GLU
169
A
LYS
170
n
170
LYS
170
A
ALA
171
n
171
ALA
171
A
VAL
172
n
172
VAL
172
A
PHE
173
n
173
PHE
173
A
GLN
174
n
174
GLN
174
A
ASN
175
n
175
ASN
175
A
ILE
176
n
176
ILE
176
A
VAL
177
n
177
VAL
177
A
ALA
178
n
178
ALA
178
A
TYR
179
n
179
TYR
179
A
PRO
180
n
180
PRO
180
A
ARG
181
n
181
ARG
181
A
n
182
182
A
n
183
183
A
n
184
184
A
n
185
185
A
n
186
186
A
n
187
187
A
n
188
188
A
n
189
189
A
n
190
190
A
n
191
191
A
n
192
192
A
author_defined_assembly
2
dimeric
A
HIS
122
A
NE2
HIS
122
1_555
A
ZN
202
B
ZN
ZN
1_555
A
GLU
128
A
OE2
GLU
128
1_555
89.7
A
HIS
122
A
NE2
HIS
122
1_555
A
ZN
202
B
ZN
ZN
1_555
A
HIS
162
A
NE2
HIS
162
1_555
88.1
A
GLU
128
A
OE2
GLU
128
1_555
A
ZN
202
B
ZN
ZN
1_555
A
HIS
162
A
NE2
HIS
162
1_555
93.1
A
HIS
122
A
NE2
HIS
122
1_555
A
ZN
202
B
ZN
ZN
1_555
A
TYR
164
A
OH
TYR
164
1_555
175.7
A
GLU
128
A
OE2
GLU
128
1_555
A
ZN
202
B
ZN
ZN
1_555
A
TYR
164
A
OH
TYR
164
1_555
86.1
A
HIS
162
A
NE2
HIS
162
1_555
A
ZN
202
B
ZN
ZN
1_555
A
TYR
164
A
OH
TYR
164
1_555
91.3
A
HIS
122
A
NE2
HIS
122
1_555
A
ZN
202
B
ZN
ZN
1_555
A
MED
201
C
N
MED
1_555
94.4
A
GLU
128
A
OE2
GLU
128
1_555
A
ZN
202
B
ZN
ZN
1_555
A
MED
201
C
N
MED
1_555
91.8
A
HIS
162
A
NE2
HIS
162
1_555
A
ZN
202
B
ZN
ZN
1_555
A
MED
201
C
N
MED
1_555
174.5
A
TYR
164
A
OH
TYR
164
1_555
A
ZN
202
B
ZN
ZN
1_555
A
MED
201
C
N
MED
1_555
86.5
A
HIS
122
A
NE2
HIS
122
1_555
A
ZN
202
B
ZN
ZN
1_555
A
MED
201
C
O
MED
1_555
94.3
A
GLU
128
A
OE2
GLU
128
1_555
A
ZN
202
B
ZN
ZN
1_555
A
MED
201
C
O
MED
1_555
170.9
A
HIS
162
A
NE2
HIS
162
1_555
A
ZN
202
B
ZN
ZN
1_555
A
MED
201
C
O
MED
1_555
95.3
A
TYR
164
A
OH
TYR
164
1_555
A
ZN
202
B
ZN
ZN
1_555
A
MED
201
C
O
MED
1_555
90.0
A
MED
201
C
N
MED
1_555
A
ZN
202
B
ZN
ZN
1_555
A
MED
201
C
O
MED
1_555
79.7
A
MSE
7
SELENOMETHIONINE
A
MSE
7
MET
A
MSE
40
SELENOMETHIONINE
A
MSE
40
MET
A
MSE
90
SELENOMETHIONINE
A
MSE
90
MET
A
MSE
118
SELENOMETHIONINE
A
MSE
118
MET
A
MSE
137
SELENOMETHIONINE
A
MSE
137
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
-0.8660254038
0.0000000000
-0.8660254038
0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
6_765
-x+2,-x+y+1,-z+1/3
crystal symmetry operation
118.8390000000
68.6117286402
16.6163333333
A
N
PHE
96
A
N
PHE
96
A
O
ILE
106
A
O
ILE
106
A
N
LEU
111
A
N
LEU
111
A
O
ALA
171
A
O
ALA
171
A
O
ALA
178
A
O
ALA
178
A
N
ILE
127
A
N
ILE
127
A
N
ILE
130
A
N
ILE
130
A
O
ILE
154
A
O
ILE
154
A
N
GLN
117
A
N
GLN
117
A
O
TYR
164
A
O
TYR
164
A
O
ALA
165
A
O
ALA
165
A
N
LYS
138
A
N
LYS
138
A
N
MSE
137
A
N
MSE
137
A
O
LEU
148
A
O
LEU
148
1
A
MSE
1
A
MSE
1
1
Y
1
A
SER
2
A
SER
2
1
Y
1
A
LEU
3
A
LEU
3
1
Y
1
A
ARG
182
A
ARG
182
1
Y
1
A
GLU
183
A
GLU
183
1
Y
1
A
GLY
184
A
GLY
184
1
Y
1
A
GLY
185
A
GLY
185
1
Y
1
A
SER
186
A
SER
186
1
Y
1
A
HIS
187
A
HIS
187
1
Y
1
A
HIS
188
A
HIS
188
1
Y
1
A
HIS
189
A
HIS
189
1
Y
1
A
HIS
190
A
HIS
190
1
Y
1
A
HIS
191
A
HIS
191
1
Y
1
A
HIS
192
A
HIS
192
1
Y
1
A
HIS
114
39.96
38.68
1
A
ASP
159
-84.13
49.35
22.4
-0.50
-0.95
0.00
-0.50
0.00
1.00
0.224
0.007
0.199
0.228
0.199
1.90
31.01
998
14358
14358
7.0
98.6
RANDOM
503009.52
0.000000
1
RESTRAINED
THROUGHOUT
0.0
SAD
Engh & Huber
FLAT MODEL
38.0352
0.377841
0.25
0.21
5.00
0.12
0.08
1.90
31.01
120
1542
10
0
1412
0.005
1.2
23.3
0.69
0.202
0.018
0.202
2.02
130
2144
2144
6
5.7
95.2
13.6
1.9
50.0
1Y9Q
14479
14479
0.0
0.055
1
21.5
13.5
99.5
1.90
1.97
1372
0.17
9.0
96.1
refinement
CNS
1.1
data collection
CBASS
data scaling
HKL-2000
phasing
SOLVE
phasing
SHARP
model building
ARP/wARP
transcriptional regulator, HTH_3 family
Crystal Structure of HTH_3 family Transcriptional Regulator from Vibrio cholerae
1
N
N
2
N
N
3
N
N
4
N
N
A
THR
4
A
THR
4
HELX_P
A
ARG
23
A
ARG
23
1
1
20
A
SER
26
A
SER
26
HELX_P
A
GLY
35
A
GLY
35
1
2
10
A
SER
37
A
SER
37
HELX_P
A
ARG
46
A
ARG
46
1
3
10
A
THR
52
A
THR
52
HELX_P
A
GLU
64
A
GLU
64
1
4
13
A
PHE
67
A
PHE
67
HELX_P
A
ALA
72
A
ALA
72
5
5
6
A
PRO
75
A
PRO
75
HELX_P
A
GLU
81
A
GLU
81
1
6
7
covale
1.331
both
A
VAL
6
A
C
VAL
6
1_555
A
MSE
7
A
N
MSE
7
1_555
covale
1.329
both
A
MSE
7
A
C
MSE
7
1_555
A
PHE
8
A
N
PHE
8
1_555
covale
1.329
both
A
ALA
39
A
C
ALA
39
1_555
A
MSE
40
A
N
MSE
40
1_555
covale
1.330
both
A
MSE
40
A
C
MSE
40
1_555
A
LEU
41
A
N
LEU
41
1_555
covale
1.326
both
A
ASN
89
A
C
ASN
89
1_555
A
MSE
90
A
N
MSE
90
1_555
covale
1.325
both
A
MSE
90
A
C
MSE
90
1_555
A
LYS
91
A
N
LYS
91
1_555
covale
1.330
both
A
GLN
117
A
C
GLN
117
1_555
A
MSE
118
A
N
MSE
118
1_555
covale
1.328
both
A
MSE
118
A
C
MSE
118
1_555
A
SER
119
A
N
SER
119
1_555
covale
1.326
both
A
ILE
136
A
C
ILE
136
1_555
A
MSE
137
A
N
MSE
137
1_555
covale
1.333
both
A
MSE
137
A
C
MSE
137
1_555
A
LYS
138
A
N
LYS
138
1_555
metalc
2.115
A
HIS
122
A
NE2
HIS
122
1_555
A
ZN
202
B
ZN
ZN
1_555
metalc
2.050
A
GLU
128
A
OE2
GLU
128
1_555
A
ZN
202
B
ZN
ZN
1_555
metalc
2.239
A
HIS
162
A
NE2
HIS
162
1_555
A
ZN
202
B
ZN
ZN
1_555
metalc
2.208
A
TYR
164
A
OH
TYR
164
1_555
A
ZN
202
B
ZN
ZN
1_555
metalc
2.222
A
MED
201
C
N
MED
1_555
A
ZN
202
B
ZN
ZN
1_555
metalc
2.080
A
MED
201
C
O
MED
1_555
A
ZN
202
B
ZN
ZN
1_555
TRANSCRIPTION REGULATOR
HTH_3 family, Transcriptional Regulaator, Strucutral Genomics, Protein Structure Initiative, PSI, New York SGX Research Center for Structural Genomics, NYSGXRC, Dimer, Two-domain structure, Structural Genomics, TRANSCRIPTION REGULATOR
Q9KQN0_VIBCH
UNP
1
2
Q9KQN0
TDVMFKSQIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEASFSAFFANDPQLLSSERS
FPDDLNMKIHTLFPYAADTGLEIFEITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFFDEQWHELQQGEHIRFFSDQPHG
YAAVTEKAVFQNIVAYPRR
2
180
1Y9Q
4
182
Q9KQN0
A
1
4
182
1
cloning artifact
MSE
1
1Y9Q
A
Q9KQN0
UNP
1
1
cloning artifact
SER
2
1Y9Q
A
Q9KQN0
UNP
2
1
cloning artifact
LEU
3
1Y9Q
A
Q9KQN0
UNP
3
1
MET
modified residue
MSE
7
1Y9Q
A
Q9KQN0
UNP
5
7
1
MET
modified residue
MSE
40
1Y9Q
A
Q9KQN0
UNP
38
40
1
MET
modified residue
MSE
90
1Y9Q
A
Q9KQN0
UNP
88
90
1
MET
modified residue
MSE
118
1Y9Q
A
Q9KQN0
UNP
116
118
1
MET
modified residue
MSE
137
1Y9Q
A
Q9KQN0
UNP
135
137
1
expression tag
GLU
183
1Y9Q
A
Q9KQN0
UNP
183
1
expression tag
GLY
184
1Y9Q
A
Q9KQN0
UNP
184
1
expression tag
GLY
185
1Y9Q
A
Q9KQN0
UNP
185
1
expression tag
SER
186
1Y9Q
A
Q9KQN0
UNP
186
1
expression tag
HIS
187
1Y9Q
A
Q9KQN0
UNP
187
1
expression tag
HIS
188
1Y9Q
A
Q9KQN0
UNP
188
1
expression tag
HIS
189
1Y9Q
A
Q9KQN0
UNP
189
1
expression tag
HIS
190
1Y9Q
A
Q9KQN0
UNP
190
1
expression tag
HIS
191
1Y9Q
A
Q9KQN0
UNP
191
1
expression tag
HIS
192
1Y9Q
A
Q9KQN0
UNP
192
5
4
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
MSE
90
A
MSE
90
A
ALA
99
A
ALA
99
A
LEU
104
A
LEU
104
A
LEU
111
A
LEU
111
A
ALA
171
A
ALA
171
A
ALA
178
A
ALA
178
A
ILE
127
A
ILE
127
A
GLU
134
A
GLU
134
A
HIS
153
A
HIS
153
A
PHE
157
A
PHE
157
A
GLN
116
A
GLN
116
A
SER
119
A
SER
119
A
HIS
162
A
HIS
162
A
ALA
166
A
ALA
166
A
MSE
137
A
MSE
137
A
PHE
141
A
PHE
141
A
GLN
144
A
GLN
144
A
LEU
148
A
LEU
148
BINDING SITE FOR RESIDUE ZN A 202
A
ZN
202
Software
5
BINDING SITE FOR RESIDUE MED A 201
A
MED
201
Software
12
A
HIS
122
A
HIS
122
5
1_555
A
GLU
128
A
GLU
128
5
1_555
A
HIS
162
A
HIS
162
5
1_555
A
TYR
164
A
TYR
164
5
1_555
A
MED
201
C
MED
5
1_555
A
TRP
57
A
TRP
57
12
1_555
A
PHE
107
A
PHE
107
12
1_555
A
ILE
109
A
ILE
109
12
1_555
A
SER
119
A
SER
119
12
1_555
A
HIS
122
A
HIS
122
12
1_555
A
GLU
128
A
GLU
128
12
1_555
A
HIS
162
A
HIS
162
12
1_555
A
TYR
164
A
TYR
164
12
1_555
A
ASN
175
A
ASN
175
12
1_555
A
ZN
202
B
ZN
12
1_555
A
HOH
239
D
HOH
12
1_555
A
HOH
322
D
HOH
12
1_555
152
P 31 2 1