0.021692
0.000000
0.000000
0.000000
0.016737
0.000000
0.000000
0.000000
0.009423
0.00000
0.00000
0.00000
Avalos, J.L.
Bever, M.K.
Wolberger, C.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
46.100
59.749
106.121
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C8 H16 N2 O3
188.224
n
N(6)-ACETYLLYSINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C6 H6 N2 O
122.125
NICOTINAMIDE
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
US
Mol.Cell
MOCEFL
2168
1097-2765
17
855
868
10.1016/j.molcel.2005.02.022
15780941
Mechanism of sirtuin inhibition by nicotinamide: altering the NAD(+) cosubstrate specificity of a Sir2 enzyme.
2005
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
93
1
CCD
2004-07-16
ADSC QUANTUM 4
2 CRYSTAL SI MONOCHROMATOR
SINGLE WAVELENGTH
M
x-ray
1
1.1
1.0
X4A
NSLS
1.1
SYNCHROTRON
NSLS BEAMLINE X4A
27569.793
NAD-dependent deacetylase
3.5.1.-
1
man
polymer
2139.521
Cellular tumor antigen p53 peptide
1
syn
polymer
65.409
ZINC ION
1
syn
non-polymer
122.125
NICOTINAMIDE
1
syn
non-polymer
18.015
water
266
nat
water
Regulatory protein SIR2 homolog
Tumor suppressor p53, Phosphoprotein p53, Antigen NY-CO-13
no
no
MKMKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPNGIYKKYSQNVFDIDFFYSHPEEFYRFAKEGIFPMLQAKPNLAH
VLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIELHGNVEEYYCVRCEKKYTVEDVIKKLESSDVPLCDDCNSLIRPNIV
FFGENLPQDALREAIGLSSRASLMIVLGSSLVVYPAAELPLITVRSGGKLVIVNLGETPFDDIATLKYNMDVVEFARRVM
EEGGIS
MKMKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPNGIYKKYSQNVFDIDFFYSHPEEFYRFAKEGIFPMLQAKPNLAH
VLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIELHGNVEEYYCVRCEKKYTVEDVIKKLESSDVPLCDDCNSLIRPNIV
FFGENLPQDALREAIGLSSRASLMIVLGSSLVVYPAAELPLITVRSGGKLVIVNLGETPFDDIATLKYNMDVVEFARRVM
EEGGIS
A
polypeptide(L)
no
yes
KKGQSTSRHK(ALY)LMFKTEG
KKGQSTSRHKKLMFKTEG
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Thermotoga
Escherichia
sample
npdA
2336
Thermotoga maritima
562
Escherichia coli
BL21(DE3)PLysS
plasmid
pET11a
1
2.48
50.4
VAPOR DIFFUSION, HANGING DROP
9.6
CHES, PEG3350, nicotinamide, pH 9.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
repository
Initial release
Version format compliance
Version format compliance
1
0
2005-04-26
1
1
2008-04-30
1
2
2011-07-13
Sir2-NAD-ADP ribose-nicotinamide
RCSB
Y
RCSB
2004-12-21
REL
REL
ZN
ZINC ION
NCA
NICOTINAMIDE
HOH
water
The sequence of the peptide is naturally found in Homo sapiens (human).
sample
ZN
1001
3
ZN
ZN
1001
A
NCA
1
4
NCA
NCA
2001
A
HOH
1
5
HOH
HOH
2002
A
HOH
3
5
HOH
HOH
2003
A
HOH
4
5
HOH
HOH
2004
A
HOH
5
5
HOH
HOH
2005
A
HOH
6
5
HOH
HOH
2006
A
HOH
7
5
HOH
HOH
2007
A
HOH
8
5
HOH
HOH
2008
A
HOH
9
5
HOH
HOH
2009
A
HOH
10
5
HOH
HOH
2010
A
HOH
11
5
HOH
HOH
2011
A
HOH
12
5
HOH
HOH
2012
A
HOH
13
5
HOH
HOH
2013
A
HOH
14
5
HOH
HOH
2014
A
HOH
15
5
HOH
HOH
2015
A
HOH
16
5
HOH
HOH
2016
A
HOH
17
5
HOH
HOH
2017
A
HOH
18
5
HOH
HOH
2018
A
HOH
19
5
HOH
HOH
2019
A
HOH
20
5
HOH
HOH
2020
A
HOH
21
5
HOH
HOH
2021
A
HOH
22
5
HOH
HOH
2022
A
HOH
23
5
HOH
HOH
2023
A
HOH
24
5
HOH
HOH
2024
A
HOH
25
5
HOH
HOH
2025
A
HOH
26
5
HOH
HOH
2026
A
HOH
27
5
HOH
HOH
2027
A
HOH
28
5
HOH
HOH
2028
A
HOH
29
5
HOH
HOH
2029
A
HOH
30
5
HOH
HOH
2030
A
HOH
31
5
HOH
HOH
2031
A
HOH
32
5
HOH
HOH
2032
A
HOH
33
5
HOH
HOH
2033
A
HOH
34
5
HOH
HOH
2034
A
HOH
35
5
HOH
HOH
2035
A
HOH
36
5
HOH
HOH
2036
A
HOH
37
5
HOH
HOH
2037
A
HOH
38
5
HOH
HOH
2038
A
HOH
39
5
HOH
HOH
2039
A
HOH
40
5
HOH
HOH
2040
A
HOH
41
5
HOH
HOH
2041
A
HOH
42
5
HOH
HOH
2042
A
HOH
43
5
HOH
HOH
2043
A
HOH
45
5
HOH
HOH
2044
A
HOH
46
5
HOH
HOH
2045
A
HOH
48
5
HOH
HOH
2046
A
HOH
49
5
HOH
HOH
2047
A
HOH
51
5
HOH
HOH
2048
A
HOH
52
5
HOH
HOH
2049
A
HOH
53
5
HOH
HOH
2050
A
HOH
54
5
HOH
HOH
2051
A
HOH
55
5
HOH
HOH
2052
A
HOH
57
5
HOH
HOH
2053
A
HOH
58
5
HOH
HOH
2054
A
HOH
60
5
HOH
HOH
2055
A
HOH
61
5
HOH
HOH
2056
A
HOH
62
5
HOH
HOH
2057
A
HOH
63
5
HOH
HOH
2058
A
HOH
64
5
HOH
HOH
2059
A
HOH
65
5
HOH
HOH
2060
A
HOH
66
5
HOH
HOH
2061
A
HOH
67
5
HOH
HOH
2062
A
HOH
68
5
HOH
HOH
2063
A
HOH
69
5
HOH
HOH
2064
A
HOH
70
5
HOH
HOH
2065
A
HOH
71
5
HOH
HOH
2066
A
HOH
72
5
HOH
HOH
2067
A
HOH
73
5
HOH
HOH
2068
A
HOH
74
5
HOH
HOH
2069
A
HOH
75
5
HOH
HOH
2070
A
HOH
76
5
HOH
HOH
2071
A
HOH
77
5
HOH
HOH
2072
A
HOH
78
5
HOH
HOH
2073
A
HOH
79
5
HOH
HOH
2074
A
HOH
80
5
HOH
HOH
2075
A
HOH
81
5
HOH
HOH
2076
A
HOH
82
5
HOH
HOH
2077
A
HOH
83
5
HOH
HOH
2078
A
HOH
84
5
HOH
HOH
2079
A
HOH
85
5
HOH
HOH
2080
A
HOH
86
5
HOH
HOH
2081
A
HOH
87
5
HOH
HOH
2082
A
HOH
88
5
HOH
HOH
2083
A
HOH
90
5
HOH
HOH
2084
A
HOH
91
5
HOH
HOH
2085
A
HOH
93
5
HOH
HOH
2086
A
HOH
94
5
HOH
HOH
2087
A
HOH
95
5
HOH
HOH
2088
A
HOH
96
5
HOH
HOH
2089
A
HOH
98
5
HOH
HOH
2090
A
HOH
100
5
HOH
HOH
2091
A
HOH
101
5
HOH
HOH
2092
A
HOH
103
5
HOH
HOH
2093
A
HOH
104
5
HOH
HOH
2094
A
HOH
105
5
HOH
HOH
2095
A
HOH
106
5
HOH
HOH
2096
A
HOH
107
5
HOH
HOH
2097
A
HOH
108
5
HOH
HOH
2098
A
HOH
110
5
HOH
HOH
2099
A
HOH
111
5
HOH
HOH
2100
A
HOH
112
5
HOH
HOH
2101
A
HOH
114
5
HOH
HOH
2102
A
HOH
116
5
HOH
HOH
2103
A
HOH
117
5
HOH
HOH
2104
A
HOH
120
5
HOH
HOH
2105
A
HOH
122
5
HOH
HOH
2106
A
HOH
123
5
HOH
HOH
2107
A
HOH
124
5
HOH
HOH
2108
A
HOH
126
5
HOH
HOH
2109
A
HOH
128
5
HOH
HOH
2110
A
HOH
129
5
HOH
HOH
2111
A
HOH
131
5
HOH
HOH
2112
A
HOH
134
5
HOH
HOH
2113
A
HOH
136
5
HOH
HOH
2114
A
HOH
137
5
HOH
HOH
2115
A
HOH
138
5
HOH
HOH
2116
A
HOH
141
5
HOH
HOH
2117
A
HOH
143
5
HOH
HOH
2118
A
HOH
145
5
HOH
HOH
2119
A
HOH
146
5
HOH
HOH
2120
A
HOH
147
5
HOH
HOH
2121
A
HOH
149
5
HOH
HOH
2122
A
HOH
152
5
HOH
HOH
2123
A
HOH
153
5
HOH
HOH
2124
A
HOH
155
5
HOH
HOH
2125
A
HOH
158
5
HOH
HOH
2126
A
HOH
166
5
HOH
HOH
2127
A
HOH
168
5
HOH
HOH
2128
A
HOH
170
5
HOH
HOH
2129
A
HOH
172
5
HOH
HOH
2130
A
HOH
173
5
HOH
HOH
2131
A
HOH
174
5
HOH
HOH
2132
A
HOH
175
5
HOH
HOH
2133
A
HOH
176
5
HOH
HOH
2134
A
HOH
179
5
HOH
HOH
2135
A
HOH
183
5
HOH
HOH
2136
A
HOH
184
5
HOH
HOH
2137
A
HOH
189
5
HOH
HOH
2138
A
HOH
193
5
HOH
HOH
2139
A
HOH
194
5
HOH
HOH
2140
A
HOH
195
5
HOH
HOH
2141
A
HOH
196
5
HOH
HOH
2142
A
HOH
197
5
HOH
HOH
2143
A
HOH
198
5
HOH
HOH
2144
A
HOH
199
5
HOH
HOH
2145
A
HOH
200
5
HOH
HOH
2146
A
HOH
201
5
HOH
HOH
2147
A
HOH
202
5
HOH
HOH
2148
A
HOH
203
5
HOH
HOH
2149
A
HOH
204
5
HOH
HOH
2150
A
HOH
205
5
HOH
HOH
2151
A
HOH
206
5
HOH
HOH
2152
A
HOH
207
5
HOH
HOH
2153
A
HOH
208
5
HOH
HOH
2154
A
HOH
209
5
HOH
HOH
2155
A
HOH
210
5
HOH
HOH
2156
A
HOH
211
5
HOH
HOH
2157
A
HOH
212
5
HOH
HOH
2158
A
HOH
213
5
HOH
HOH
2159
A
HOH
216
5
HOH
HOH
2160
A
HOH
217
5
HOH
HOH
2161
A
HOH
218
5
HOH
HOH
2162
A
HOH
219
5
HOH
HOH
2163
A
HOH
220
5
HOH
HOH
2164
A
HOH
221
5
HOH
HOH
2165
A
HOH
222
5
HOH
HOH
2166
A
HOH
223
5
HOH
HOH
2167
A
HOH
224
5
HOH
HOH
2168
A
HOH
225
5
HOH
HOH
2169
A
HOH
226
5
HOH
HOH
2170
A
HOH
227
5
HOH
HOH
2171
A
HOH
230
5
HOH
HOH
2172
A
HOH
232
5
HOH
HOH
2173
A
HOH
233
5
HOH
HOH
2174
A
HOH
234
5
HOH
HOH
2175
A
HOH
235
5
HOH
HOH
2176
A
HOH
236
5
HOH
HOH
2177
A
HOH
237
5
HOH
HOH
2178
A
HOH
240
5
HOH
HOH
2179
A
HOH
241
5
HOH
HOH
2180
A
HOH
242
5
HOH
HOH
2181
A
HOH
243
5
HOH
HOH
2182
A
HOH
244
5
HOH
HOH
2183
A
HOH
245
5
HOH
HOH
2184
A
HOH
246
5
HOH
HOH
2185
A
HOH
247
5
HOH
HOH
2186
A
HOH
248
5
HOH
HOH
2187
A
HOH
249
5
HOH
HOH
2188
A
HOH
250
5
HOH
HOH
2189
A
HOH
251
5
HOH
HOH
2190
A
HOH
252
5
HOH
HOH
2191
A
HOH
253
5
HOH
HOH
2192
A
HOH
254
5
HOH
HOH
2193
A
HOH
256
5
HOH
HOH
2194
A
HOH
257
5
HOH
HOH
2195
A
HOH
258
5
HOH
HOH
2196
A
HOH
259
5
HOH
HOH
2197
A
HOH
260
5
HOH
HOH
2198
A
HOH
261
5
HOH
HOH
2199
A
HOH
262
5
HOH
HOH
2200
A
HOH
263
5
HOH
HOH
2201
A
HOH
267
5
HOH
HOH
2202
A
HOH
268
5
HOH
HOH
2203
A
HOH
269
5
HOH
HOH
2204
A
HOH
270
5
HOH
HOH
2205
A
HOH
271
5
HOH
HOH
2206
A
HOH
272
5
HOH
HOH
2207
A
HOH
273
5
HOH
HOH
2208
A
HOH
274
5
HOH
HOH
2209
A
HOH
275
5
HOH
HOH
2210
A
HOH
276
5
HOH
HOH
2211
A
HOH
277
5
HOH
HOH
2212
A
HOH
279
5
HOH
HOH
2213
A
HOH
281
5
HOH
HOH
2214
A
HOH
282
5
HOH
HOH
2215
A
HOH
284
5
HOH
HOH
2216
A
HOH
285
5
HOH
HOH
2217
A
HOH
287
5
HOH
HOH
2218
A
HOH
288
5
HOH
HOH
2219
A
HOH
289
5
HOH
HOH
2220
A
HOH
290
5
HOH
HOH
2221
A
HOH
291
5
HOH
HOH
2222
A
HOH
293
5
HOH
HOH
2223
A
HOH
294
5
HOH
HOH
2224
A
HOH
298
5
HOH
HOH
2225
A
HOH
299
5
HOH
HOH
2226
A
HOH
303
5
HOH
HOH
2227
A
HOH
306
5
HOH
HOH
2228
A
HOH
307
5
HOH
HOH
2229
A
HOH
309
5
HOH
HOH
2230
A
HOH
310
5
HOH
HOH
2231
A
HOH
312
5
HOH
HOH
2232
A
HOH
315
5
HOH
HOH
2233
A
HOH
316
5
HOH
HOH
2234
A
HOH
317
5
HOH
HOH
2235
A
HOH
319
5
HOH
HOH
2236
A
HOH
320
5
HOH
HOH
2237
A
HOH
321
5
HOH
HOH
2238
A
HOH
322
5
HOH
HOH
2239
A
HOH
325
5
HOH
HOH
2240
A
HOH
326
5
HOH
HOH
2241
A
HOH
327
5
HOH
HOH
2242
A
HOH
328
5
HOH
HOH
2243
A
HOH
329
5
HOH
HOH
2244
A
HOH
331
5
HOH
HOH
2245
A
HOH
332
5
HOH
HOH
2246
A
HOH
334
5
HOH
HOH
2247
A
HOH
335
5
HOH
HOH
2248
A
HOH
44
5
HOH
HOH
44
B
HOH
50
5
HOH
HOH
50
B
HOH
59
5
HOH
HOH
59
B
HOH
89
5
HOH
HOH
89
B
HOH
97
5
HOH
HOH
97
B
HOH
99
5
HOH
HOH
99
B
HOH
109
5
HOH
HOH
109
B
HOH
132
5
HOH
HOH
132
B
HOH
133
5
HOH
HOH
133
B
HOH
144
5
HOH
HOH
144
B
HOH
165
5
HOH
HOH
165
B
HOH
215
5
HOH
HOH
215
B
HOH
229
5
HOH
HOH
229
B
HOH
231
5
HOH
HOH
231
B
HOH
238
5
HOH
HOH
238
B
HOH
255
5
HOH
HOH
255
B
HOH
265
5
HOH
HOH
265
B
HOH
311
5
HOH
HOH
311
B
HOH
314
5
HOH
HOH
314
B
MET
1
n
1
MET
1
A
LYS
2
n
2
LYS
2
A
MET
3
n
3
MET
3
A
LYS
4
n
4
LYS
4
A
GLU
5
n
5
GLU
5
A
PHE
6
n
6
PHE
6
A
LEU
7
n
7
LEU
7
A
ASP
8
n
8
ASP
8
A
LEU
9
n
9
LEU
9
A
LEU
10
n
10
LEU
10
A
ASN
11
n
11
ASN
11
A
GLU
12
n
12
GLU
12
A
SER
13
n
13
SER
13
A
ARG
14
n
14
ARG
14
A
LEU
15
n
15
LEU
15
A
THR
16
n
16
THR
16
A
VAL
17
n
17
VAL
17
A
THR
18
n
18
THR
18
A
LEU
19
n
19
LEU
19
A
THR
20
n
20
THR
20
A
GLY
21
n
21
GLY
21
A
ALA
22
n
22
ALA
22
A
GLY
23
n
23
GLY
23
A
ILE
24
n
24
ILE
24
A
SER
25
n
25
SER
25
A
THR
26
n
26
THR
26
A
PRO
27
n
27
PRO
27
A
SER
28
n
28
SER
28
A
GLY
29
n
29
GLY
29
A
ILE
30
n
30
ILE
30
A
PRO
31
n
31
PRO
31
A
ASP
32
n
32
ASP
32
A
PHE
33
n
33
PHE
33
A
n
34
34
A
n
35
35
A
n
36
36
A
n
37
37
A
n
38
38
A
n
39
39
A
n
40
40
A
n
41
41
A
n
42
42
A
n
43
43
A
n
44
44
A
GLN
45
n
45
GLN
45
A
ASN
46
n
46
ASN
46
A
VAL
47
n
47
VAL
47
A
PHE
48
n
48
PHE
48
A
ASP
49
n
49
ASP
49
A
ILE
50
n
50
ILE
50
A
ASP
51
n
51
ASP
51
A
PHE
52
n
52
PHE
52
A
PHE
53
n
53
PHE
53
A
TYR
54
n
54
TYR
54
A
SER
55
n
55
SER
55
A
HIS
56
n
56
HIS
56
A
PRO
57
n
57
PRO
57
A
GLU
58
n
58
GLU
58
A
GLU
59
n
59
GLU
59
A
PHE
60
n
60
PHE
60
A
TYR
61
n
61
TYR
61
A
ARG
62
n
62
ARG
62
A
PHE
63
n
63
PHE
63
A
ALA
64
n
64
ALA
64
A
LYS
65
n
65
LYS
65
A
GLU
66
n
66
GLU
66
A
GLY
67
n
67
GLY
67
A
ILE
68
n
68
ILE
68
A
PHE
69
n
69
PHE
69
A
PRO
70
n
70
PRO
70
A
MET
71
n
71
MET
71
A
LEU
72
n
72
LEU
72
A
GLN
73
n
73
GLN
73
A
ALA
74
n
74
ALA
74
A
LYS
75
n
75
LYS
75
A
PRO
76
n
76
PRO
76
A
ASN
77
n
77
ASN
77
A
LEU
78
n
78
LEU
78
A
ALA
79
n
79
ALA
79
A
HIS
80
n
80
HIS
80
A
VAL
81
n
81
VAL
81
A
LEU
82
n
82
LEU
82
A
LEU
83
n
83
LEU
83
A
ALA
84
n
84
ALA
84
A
LYS
85
n
85
LYS
85
A
LEU
86
n
86
LEU
86
A
GLU
87
n
87
GLU
87
A
GLU
88
n
88
GLU
88
A
LYS
89
n
89
LYS
89
A
GLY
90
n
90
GLY
90
A
LEU
91
n
91
LEU
91
A
ILE
92
n
92
ILE
92
A
GLU
93
n
93
GLU
93
A
ALA
94
n
94
ALA
94
A
VAL
95
n
95
VAL
95
A
ILE
96
n
96
ILE
96
A
THR
97
n
97
THR
97
A
GLN
98
n
98
GLN
98
A
ASN
99
n
99
ASN
99
A
ILE
100
n
100
ILE
100
A
ASP
101
n
101
ASP
101
A
ARG
102
n
102
ARG
102
A
LEU
103
n
103
LEU
103
A
HIS
104
n
104
HIS
104
A
GLN
105
n
105
GLN
105
A
ARG
106
n
106
ARG
106
A
ALA
107
n
107
ALA
107
A
GLY
108
n
108
GLY
108
A
SER
109
n
109
SER
109
A
LYS
110
n
110
LYS
110
A
LYS
111
n
111
LYS
111
A
VAL
112
n
112
VAL
112
A
ILE
113
n
113
ILE
113
A
GLU
114
n
114
GLU
114
A
LEU
115
n
115
LEU
115
A
HIS
116
n
116
HIS
116
A
GLY
117
n
117
GLY
117
A
ASN
118
n
118
ASN
118
A
VAL
119
n
119
VAL
119
A
GLU
120
n
120
GLU
120
A
GLU
121
n
121
GLU
121
A
TYR
122
n
122
TYR
122
A
TYR
123
n
123
TYR
123
A
CYS
124
n
124
CYS
124
A
VAL
125
n
125
VAL
125
A
ARG
126
n
126
ARG
126
A
CYS
127
n
127
CYS
127
A
GLU
128
n
128
GLU
128
A
LYS
129
n
129
LYS
129
A
LYS
130
n
130
LYS
130
A
TYR
131
n
131
TYR
131
A
THR
132
n
132
THR
132
A
VAL
133
n
133
VAL
133
A
GLU
134
n
134
GLU
134
A
ASP
135
n
135
ASP
135
A
VAL
136
n
136
VAL
136
A
ILE
137
n
137
ILE
137
A
LYS
138
n
138
LYS
138
A
LYS
139
n
139
LYS
139
A
LEU
140
n
140
LEU
140
A
GLU
141
n
141
GLU
141
A
SER
142
n
142
SER
142
A
SER
143
n
143
SER
143
A
ASP
144
n
144
ASP
144
A
VAL
145
n
145
VAL
145
A
PRO
146
n
146
PRO
146
A
LEU
147
n
147
LEU
147
A
CYS
148
n
148
CYS
148
A
ASP
149
n
149
ASP
149
A
ASP
150
n
150
ASP
150
A
CYS
151
n
151
CYS
151
A
ASN
152
n
152
ASN
152
A
SER
153
n
153
SER
153
A
LEU
154
n
154
LEU
154
A
ILE
155
n
155
ILE
155
A
ARG
156
n
156
ARG
156
A
PRO
157
n
157
PRO
157
A
ASN
158
n
158
ASN
158
A
ILE
159
n
159
ILE
159
A
VAL
160
n
160
VAL
160
A
PHE
161
n
161
PHE
161
A
PHE
162
n
162
PHE
162
A
GLY
163
n
163
GLY
163
A
GLU
164
n
164
GLU
164
A
ASN
165
n
165
ASN
165
A
LEU
166
n
166
LEU
166
A
PRO
167
n
167
PRO
167
A
GLN
168
n
168
GLN
168
A
ASP
169
n
169
ASP
169
A
ALA
170
n
170
ALA
170
A
LEU
171
n
171
LEU
171
A
ARG
172
n
172
ARG
172
A
GLU
173
n
173
GLU
173
A
ALA
174
n
174
ALA
174
A
ILE
175
n
175
ILE
175
A
GLY
176
n
176
GLY
176
A
LEU
177
n
177
LEU
177
A
SER
178
n
178
SER
178
A
SER
179
n
179
SER
179
A
ARG
180
n
180
ARG
180
A
ALA
181
n
181
ALA
181
A
SER
182
n
182
SER
182
A
LEU
183
n
183
LEU
183
A
MET
184
n
184
MET
184
A
ILE
185
n
185
ILE
185
A
VAL
186
n
186
VAL
186
A
LEU
187
n
187
LEU
187
A
GLY
188
n
188
GLY
188
A
SER
189
n
189
SER
189
A
SER
190
n
190
SER
190
A
LEU
191
n
191
LEU
191
A
VAL
192
n
192
VAL
192
A
VAL
193
n
193
VAL
193
A
TYR
194
n
194
TYR
194
A
PRO
195
n
195
PRO
195
A
ALA
196
n
196
ALA
196
A
ALA
197
n
197
ALA
197
A
GLU
198
n
198
GLU
198
A
LEU
199
n
199
LEU
199
A
PRO
200
n
200
PRO
200
A
LEU
201
n
201
LEU
201
A
ILE
202
n
202
ILE
202
A
THR
203
n
203
THR
203
A
VAL
204
n
204
VAL
204
A
ARG
205
n
205
ARG
205
A
SER
206
n
206
SER
206
A
GLY
207
n
207
GLY
207
A
GLY
208
n
208
GLY
208
A
LYS
209
n
209
LYS
209
A
LEU
210
n
210
LEU
210
A
VAL
211
n
211
VAL
211
A
ILE
212
n
212
ILE
212
A
VAL
213
n
213
VAL
213
A
ASN
214
n
214
ASN
214
A
LEU
215
n
215
LEU
215
A
GLY
216
n
216
GLY
216
A
GLU
217
n
217
GLU
217
A
THR
218
n
218
THR
218
A
PRO
219
n
219
PRO
219
A
PHE
220
n
220
PHE
220
A
ASP
221
n
221
ASP
221
A
ASP
222
n
222
ASP
222
A
ILE
223
n
223
ILE
223
A
ALA
224
n
224
ALA
224
A
THR
225
n
225
THR
225
A
LEU
226
n
226
LEU
226
A
LYS
227
n
227
LYS
227
A
TYR
228
n
228
TYR
228
A
ASN
229
n
229
ASN
229
A
MET
230
n
230
MET
230
A
ASP
231
n
231
ASP
231
A
VAL
232
n
232
VAL
232
A
VAL
233
n
233
VAL
233
A
GLU
234
n
234
GLU
234
A
PHE
235
n
235
PHE
235
A
ALA
236
n
236
ALA
236
A
ARG
237
n
237
ARG
237
A
ARG
238
n
238
ARG
238
A
VAL
239
n
239
VAL
239
A
MET
240
n
240
MET
240
A
GLU
241
n
241
GLU
241
A
GLU
242
n
242
GLU
242
A
GLY
243
n
243
GLY
243
A
GLY
244
n
244
GLY
244
A
ILE
245
n
245
ILE
245
A
n
246
246
A
n
1
372
B
LYS
373
n
2
LYS
373
B
GLY
374
n
3
GLY
374
B
GLN
375
n
4
GLN
375
B
SER
376
n
5
SER
376
B
THR
377
n
6
THR
377
B
SER
378
n
7
SER
378
B
ARG
379
n
8
ARG
379
B
HIS
380
n
9
HIS
380
B
LYS
381
n
10
LYS
381
B
ALY
382
n
11
ALY
382
B
LEU
383
n
12
LEU
383
B
MET
384
n
13
MET
384
B
PHE
385
n
14
PHE
385
B
n
15
386
B
n
16
387
B
n
17
388
B
n
18
389
B
author_defined_assembly
2
dimeric
A
CYS
124
A
SG
CYS
124
1_555
A
ZN
1001
C
ZN
ZN
1_555
A
CYS
151
A
SG
CYS
151
1_555
96.5
A
CYS
124
A
SG
CYS
124
1_555
A
ZN
1001
C
ZN
ZN
1_555
A
CYS
148
A
SG
CYS
148
1_555
106.3
A
CYS
151
A
SG
CYS
151
1_555
A
ZN
1001
C
ZN
ZN
1_555
A
CYS
148
A
SG
CYS
148
1_555
116.2
A
CYS
124
A
SG
CYS
124
1_555
A
ZN
1001
C
ZN
ZN
1_555
A
CYS
127
A
SG
CYS
127
1_555
108.9
A
CYS
151
A
SG
CYS
151
1_555
A
ZN
1001
C
ZN
ZN
1_555
A
CYS
127
A
SG
CYS
127
1_555
122.0
A
CYS
148
A
SG
CYS
148
1_555
A
ZN
1001
C
ZN
ZN
1_555
A
CYS
127
A
SG
CYS
127
1_555
105.5
B
ALY
382
N(6)-ACETYLLYSINE
B
ALY
11
LYS
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ILE
113
A
O
ILE
113
A
N
VAL
95
A
N
VAL
95
A
O
ILE
96
A
O
ILE
96
A
N
THR
18
A
N
THR
18
A
N
LEU
19
A
N
LEU
19
A
O
LEU
187
A
O
LEU
187
A
N
VAL
186
A
N
VAL
186
A
O
VAL
211
A
O
VAL
211
A
N
ILE
212
A
N
ILE
212
A
O
TYR
228
A
O
TYR
228
A
O
TYR
131
A
O
TYR
131
A
N
TYR
122
A
N
TYR
122
A
N
TYR
123
A
N
TYR
123
A
O
ARG
156
A
O
ARG
156
A
N
TYR
194
A
N
TYR
194
B
O
LEU
383
B
O
LEU
12
1
A
CG
GLN
45
A
CG
GLN
45
1
Y
1
A
CD
GLN
45
A
CD
GLN
45
1
Y
1
A
OE1
GLN
45
A
OE1
GLN
45
1
Y
1
A
NE2
GLN
45
A
NE2
GLN
45
1
Y
1
B
CG
LYS
373
B
CG
LYS
2
1
Y
1
B
CD
LYS
373
B
CD
LYS
2
1
Y
1
B
CE
LYS
373
B
CE
LYS
2
1
Y
1
B
NZ
LYS
373
B
NZ
LYS
2
1
Y
1
A
ARG
34
A
ARG
34
1
Y
1
A
GLY
35
A
GLY
35
1
Y
1
A
PRO
36
A
PRO
36
1
Y
1
A
ASN
37
A
ASN
37
1
Y
1
A
GLY
38
A
GLY
38
1
Y
1
A
ILE
39
A
ILE
39
1
Y
1
A
TYR
40
A
TYR
40
1
Y
1
A
LYS
41
A
LYS
41
1
Y
1
A
LYS
42
A
LYS
42
1
Y
1
A
TYR
43
A
TYR
43
1
Y
1
A
SER
44
A
SER
44
1
Y
1
A
SER
246
A
SER
246
1
Y
1
B
LYS
372
B
LYS
1
1
Y
1
B
LYS
386
B
LYS
15
1
Y
1
B
THR
387
B
THR
16
1
Y
1
B
GLU
388
B
GLU
17
1
Y
1
B
GLY
389
B
GLY
18
1
Y
1
5.91
0.90
118.30
124.21
A
A
A
CB
CG
OD2
ASP
ASP
ASP
222
222
222
N
1
B
ALY
382
-55.37
101.98
16.796
0.50
0.00
0.00
0.01
0.00
-0.52
0.960
0.957
0.20218
0.1854
0.1865
0.18626
1.40
30
2903
58595
55273
5.0
99.43
0.855
0.035
RANDOM
1
THROUGHOUT
0
MOLECULAR REPLACEMENT
0.058
0.058
0.80
0.80
1.20
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
1.40
30
266
2217
10
0
1941
0.010
0.022
1983
1.331
1.979
2673
5.431
5.000
244
35.372
24.302
86
12.034
15.000
357
18.957
15.000
12
0.087
0.200
305
0.008
0.020
1470
0.203
0.200
908
0.310
0.200
1392
0.107
0.200
219
0.148
0.200
54
0.133
0.200
19
0.947
1.500
1260
1.508
2.000
1983
2.377
3.000
800
3.748
4.500
690
0.24
0.231
1.436
232
3958
20
98.96
1.4
50
1YC5
58673
58321
2
2
0.053
0.046
1
26.1
6.8
99.4
0.414
1.4
1.45
3.7
5707
0.399
4.6
99
refinement
REFMAC
5.2.0003
data reduction
HKL-2000
data scaling
SCALEPACK
phasing
MOLREP
NAD-dependent deacetylase (E.C.3.5.1.-), Cellular tumor antigen p53 peptide
Sir2-p53 peptide-nicotinamide
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
A
MET
3
A
MET
3
HELX_P
A
SER
13
A
SER
13
1
1
11
A
ALA
22
A
ALA
22
HELX_P
A
GLY
29
A
GLY
29
5
2
8
A
ASP
49
A
ASP
49
HELX_P
A
HIS
56
A
HIS
56
1
3
8
A
HIS
56
A
HIS
56
HELX_P
A
ILE
68
A
ILE
68
1
4
13
A
PHE
69
A
PHE
69
HELX_P
A
ALA
74
A
ALA
74
5
5
6
A
ASN
77
A
ASN
77
HELX_P
A
LYS
89
A
LYS
89
1
6
13
A
ARG
102
A
ARG
102
HELX_P
A
ALA
107
A
ALA
107
1
7
6
A
VAL
133
A
VAL
133
HELX_P
A
LEU
140
A
LEU
140
1
8
8
A
PRO
167
A
PRO
167
HELX_P
A
ALA
181
A
ALA
181
1
9
15
A
PRO
195
A
PRO
195
HELX_P
A
ALA
197
A
ALA
197
5
10
3
A
GLU
198
A
GLU
198
HELX_P
A
GLY
207
A
GLY
207
1
11
10
A
PHE
220
A
PHE
220
HELX_P
A
ALA
224
A
ALA
224
5
12
5
A
ASP
231
A
ASP
231
HELX_P
A
GLY
244
A
GLY
244
1
13
14
B
GLY
374
B
GLY
3
HELX_P
B
LYS
381
B
LYS
10
5
14
8
metalc
2.302
A
ZN
1001
C
ZN
ZN
1_555
A
CYS
124
A
SG
CYS
124
1_555
metalc
2.260
A
ZN
1001
C
ZN
ZN
1_555
A
CYS
151
A
SG
CYS
151
1_555
metalc
2.405
A
ZN
1001
C
ZN
ZN
1_555
A
CYS
148
A
SG
CYS
148
1_555
metalc
2.347
A
ZN
1001
C
ZN
ZN
1_555
A
CYS
127
A
SG
CYS
127
1_555
covale
1.327
B
LYS
381
B
C
LYS
10
1_555
B
ALY
382
B
N
ALY
11
1_555
covale
1.335
B
ALY
382
B
C
ALY
11
1_555
B
LEU
383
B
N
LEU
12
1_555
HYDROLASE
sir2, sirtuin, sir2Tm, SirT1, p53, nicotinamide, HYDROLASE
A
TYR
194
A
TYR
194
1
A
PRO
195
A
PRO
195
-0.08
NPD_THEMA
UNP
1
1
Q9WYW0
MKMKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPNGIYKKYSQNVFDIDFFYSHPEEFYRFAKEGIFPMLQAKPNLAH
VLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIELHGNVEEYYCVRCEKKYTVEDVIKKLESSDVPLCDDCNSLIRPNIV
FFGENLPQDALREAIGLSSRASLMIVLGSSLVVYPAAELPLITVRSGGKLVIVNLGETPFDDIATLKYNMDVVEFARRVM
EEGGIS
P53_HUMAN
UNP
2
372
Q9NP68
KKGQSTSRHKKLMFKTEG
1
246
1YC5
1
246
Q9WYW0
A
1
1
246
372
389
1YC5
372
389
Q9NP68
B
2
1
18
2
LYS
MODIFIED RESIDUE
ALY
382
1YC5
B
Q9NP68
UNP
382
11
6
3
2
parallel
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
A
VAL
112
A
VAL
112
A
GLU
114
A
GLU
114
A
ALA
94
A
ALA
94
A
THR
97
A
THR
97
A
THR
16
A
THR
16
A
THR
20
A
THR
20
A
LEU
183
A
LEU
183
A
LEU
187
A
LEU
187
A
LYS
209
A
LYS
209
A
VAL
213
A
VAL
213
A
LEU
226
A
LEU
226
A
TYR
228
A
TYR
228
A
LYS
130
A
LYS
130
A
THR
132
A
THR
132
A
GLY
117
A
GLY
117
A
CYS
124
A
CYS
124
A
ILE
155
A
ILE
155
A
ILE
159
A
ILE
159
A
VAL
193
A
VAL
193
A
TYR
194
A
TYR
194
B
LEU
383
B
LEU
12
B
MET
384
B
MET
13
BINDING SITE FOR RESIDUE ZN A 1001
Software
4
BINDING SITE FOR RESIDUE NCA A 2001
Software
8
A
CYS
124
A
CYS
124
4
1_555
A
CYS
127
A
CYS
127
4
1_555
A
CYS
148
A
CYS
148
4
1_555
A
CYS
151
A
CYS
151
4
1_555
A
ILE
30
A
ILE
30
8
1_555
A
PRO
31
A
PRO
31
8
1_555
A
ASP
32
A
ASP
32
8
1_555
A
PHE
33
A
PHE
33
8
1_555
A
ASN
99
A
ASN
99
8
1_555
A
ILE
100
A
ILE
100
8
1_555
A
ASP
101
A
ASP
101
8
1_555
A
HOH
2012
E
HOH
8
1_555
19
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