1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Santalucia Junior, J. Turner, D.H. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking US Biochemistry BICHAW 0033 0006-2960 32 12612 12623 10.1021/bi00210a009 8251479 Structure of (rGGCGAGCC)2 in solution from NMR and restrained molecular dynamics. 1993 10.2210/pdb1yfv/pdb pdb_00001yfv 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 ANTI-PARALLEL RNA DUPLEX, TANDEM GA MISMATCH 2580.617 RNA (5'-R(GP*GP*CP*GP*AP*GP*CP*C)-3') 2 syn polymer no no GGCGAGCC GGCGAGCC A,B polyribonucleotide n n n n n n n n -11.159 1 19 A 1 B 16 -1.055 A_G1:C16_B 1 -8.197 -0.740 -0.197 -0.420 -7.928 1 19 A 2 B 15 -2.442 A_G2:C15_B 2 -9.025 -0.625 -0.124 -0.445 4.481 1 19 A 3 B 14 1.347 A_C3:G14_B 3 -12.753 1.150 -0.448 -0.490 5.571 10 11 A 4 B 13 -6.733 A_G4:A13_B 4 -3.780 6.443 -0.500 -4.624 -5.577 10 11 A 5 B 12 -6.732 A_A5:G12_B 5 -3.778 -6.444 -0.500 -4.623 -4.509 1 19 A 6 B 11 1.341 A_G6:C11_B 6 -12.742 -1.149 -0.448 -0.489 7.921 1 19 A 7 B 10 -2.464 A_C7:G10_B 7 -9.015 0.625 -0.123 -0.444 11.164 1 19 A 8 B 9 -1.068 A_C8:G9_B 8 -8.189 0.740 -0.197 -0.421 3.119 35.688 A A 1 2 1.164 B B 16 15 3.114 0.713 -0.795 -1.701 AA_G1G2:C15C16_BB 1 -2.023 3.303 35.625 -2.873 1.017 2.957 42.953 A A 2 3 -0.994 B B 15 14 2.932 -0.727 0.188 -1.160 AA_G2C3:G14C15_BB 2 3.149 -4.304 42.837 -1.519 0.024 3.358 56.849 A A 3 4 3.716 B B 14 13 3.409 3.536 -0.796 -0.977 AA_C3G4:A13G14_BB 3 -0.823 0.865 56.742 -1.229 0.789 3.549 -13.489 A A 4 5 -40.424 B B 13 12 3.486 8.735 0.000 -1.374 AA_G4A5:G12A13_BB 4 0.000 0.000 -10.288 -5.120 0.001 3.359 56.851 A A 5 6 3.706 B B 12 11 3.409 3.527 0.796 -0.977 AA_A5G6:C11G12_BB 5 0.829 -0.872 56.745 -1.229 -0.789 2.955 42.943 A A 6 7 -0.971 B B 11 10 2.932 -0.710 -0.188 -1.160 AA_G6C7:G10C11_BB 6 -3.149 4.305 42.828 -1.521 -0.024 3.119 35.689 A A 7 8 1.147 B B 10 9 3.113 0.702 0.795 -1.701 AA_C7C8:G9G10_BB 7 2.022 -3.300 35.627 -2.873 -1.018 database_2 pdbx_database_status pdbx_entity_src_syn pdbx_nmr_software pdbx_nmr_spectrometer pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Other Source and taxonomy 1 0 1997-10-15 1 1 2008-03-24 1 2 2011-07-13 1 3 2021-10-27 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model Y BNL 1997-05-17 REL 32630 synthetic construct sample PUBLISHED STRUCTURE GIVEN 11 1 NOESY DQFCOSY HETCOR HMQC 7 308.15 K RESTRAINED MOLECULAR DYNAMICS AND ENERGY MINIZATION BRUNGER refinement X-PLOR BRUNGER structure calculation X-PLOR Accelrys Software Inc. structure calculation Insight II Biosym 600 Bruker AMX 400 Bruker AMX 600 Varian VXRS G 1 n 1 G 1 A G 2 n 2 G 2 A C 3 n 3 C 3 A G 4 n 4 G 4 A A 5 n 5 A 5 A G 6 n 6 G 6 A C 7 n 7 C 7 A C 8 n 8 C 8 A G 9 n 1 G 9 B G 10 n 2 G 10 B C 11 n 3 C 11 B G 12 n 4 G 12 B A 13 n 5 A 13 B G 14 n 6 G 14 B C 15 n 7 C 15 B C 16 n 8 C 16 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 identity operation 0.0000000000 0.0000000000 0.0000000000 model building VNMR model building X-PLOR refinement X-PLOR phasing VNMR phasing X-PLOR STRUCTURE OF (5'-R(GP*GP*CP*GP*AP*GP*CP*C)-3')2 BY 2-D NMR, 1 STRUCTURE 1 N N 1 N N hydrog WATSON-CRICK A G 1 A N1 G 1 1_555 B C 16 B N3 C 8 1_555 hydrog WATSON-CRICK A G 1 A N2 G 1 1_555 B C 16 B O2 C 8 1_555 hydrog WATSON-CRICK A G 1 A O6 G 1 1_555 B C 16 B N4 C 8 1_555 hydrog WATSON-CRICK A G 2 A N1 G 2 1_555 B C 15 B N3 C 7 1_555 hydrog WATSON-CRICK A G 2 A N2 G 2 1_555 B C 15 B O2 C 7 1_555 hydrog WATSON-CRICK A G 2 A O6 G 2 1_555 B C 15 B N4 C 7 1_555 hydrog WATSON-CRICK A C 3 A N3 C 3 1_555 B G 14 B N1 G 6 1_555 hydrog WATSON-CRICK A C 3 A N4 C 3 1_555 B G 14 B O6 G 6 1_555 hydrog WATSON-CRICK A C 3 A O2 C 3 1_555 B G 14 B N2 G 6 1_555 hydrog TYPE_11_PAIR A G 4 A N2 G 4 1_555 B A 13 B N7 A 5 1_555 hydrog TYPE_11_PAIR A G 4 A N3 G 4 1_555 B A 13 B N6 A 5 1_555 hydrog TYPE_11_PAIR A A 5 A N6 A 5 1_555 B G 12 B N3 G 4 1_555 hydrog TYPE_11_PAIR A A 5 A N7 A 5 1_555 B G 12 B N2 G 4 1_555 hydrog WATSON-CRICK A G 6 A N1 G 6 1_555 B C 11 B N3 C 3 1_555 hydrog WATSON-CRICK A G 6 A N2 G 6 1_555 B C 11 B O2 C 3 1_555 hydrog WATSON-CRICK A G 6 A O6 G 6 1_555 B C 11 B N4 C 3 1_555 hydrog WATSON-CRICK A C 7 A N3 C 7 1_555 B G 10 B N1 G 2 1_555 hydrog WATSON-CRICK A C 7 A N4 C 7 1_555 B G 10 B O6 G 2 1_555 hydrog WATSON-CRICK A C 7 A O2 C 7 1_555 B G 10 B N2 G 2 1_555 hydrog WATSON-CRICK A C 8 A N3 C 8 1_555 B G 9 B N1 G 1 1_555 hydrog WATSON-CRICK A C 8 A N4 C 8 1_555 B G 9 B O6 G 1 1_555 hydrog WATSON-CRICK A C 8 A O2 C 8 1_555 B G 9 B N2 G 1 1_555 RNA RIBONUCLEIC ACID, G:A MISMATCH, 2-D NMR, ANTI-PARALLEL RNA DUPLEX, RNA 1YFV PDB 1 1YFV 1 8 1YFV 1 8 1YFV A 1 1 8 9 16 1YFV 9 16 1YFV B 1 1 8 1 P 1