1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Santalucia Junior, J.
Turner, D.H.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
US
Biochemistry
BICHAW
0033
0006-2960
32
12612
12623
10.1021/bi00210a009
8251479
Structure of (rGGCGAGCC)2 in solution from NMR and restrained molecular dynamics.
1993
10.2210/pdb1yfv/pdb
pdb_00001yfv
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
ANTI-PARALLEL RNA DUPLEX, TANDEM GA MISMATCH
2580.617
RNA (5'-R(GP*GP*CP*GP*AP*GP*CP*C)-3')
2
syn
polymer
no
no
GGCGAGCC
GGCGAGCC
A,B
polyribonucleotide
n
n
n
n
n
n
n
n
-11.159
1
19
A
1
B
16
-1.055
A_G1:C16_B
1
-8.197
-0.740
-0.197
-0.420
-7.928
1
19
A
2
B
15
-2.442
A_G2:C15_B
2
-9.025
-0.625
-0.124
-0.445
4.481
1
19
A
3
B
14
1.347
A_C3:G14_B
3
-12.753
1.150
-0.448
-0.490
5.571
10
11
A
4
B
13
-6.733
A_G4:A13_B
4
-3.780
6.443
-0.500
-4.624
-5.577
10
11
A
5
B
12
-6.732
A_A5:G12_B
5
-3.778
-6.444
-0.500
-4.623
-4.509
1
19
A
6
B
11
1.341
A_G6:C11_B
6
-12.742
-1.149
-0.448
-0.489
7.921
1
19
A
7
B
10
-2.464
A_C7:G10_B
7
-9.015
0.625
-0.123
-0.444
11.164
1
19
A
8
B
9
-1.068
A_C8:G9_B
8
-8.189
0.740
-0.197
-0.421
3.119
35.688
A
A
1
2
1.164
B
B
16
15
3.114
0.713
-0.795
-1.701
AA_G1G2:C15C16_BB
1
-2.023
3.303
35.625
-2.873
1.017
2.957
42.953
A
A
2
3
-0.994
B
B
15
14
2.932
-0.727
0.188
-1.160
AA_G2C3:G14C15_BB
2
3.149
-4.304
42.837
-1.519
0.024
3.358
56.849
A
A
3
4
3.716
B
B
14
13
3.409
3.536
-0.796
-0.977
AA_C3G4:A13G14_BB
3
-0.823
0.865
56.742
-1.229
0.789
3.549
-13.489
A
A
4
5
-40.424
B
B
13
12
3.486
8.735
0.000
-1.374
AA_G4A5:G12A13_BB
4
0.000
0.000
-10.288
-5.120
0.001
3.359
56.851
A
A
5
6
3.706
B
B
12
11
3.409
3.527
0.796
-0.977
AA_A5G6:C11G12_BB
5
0.829
-0.872
56.745
-1.229
-0.789
2.955
42.943
A
A
6
7
-0.971
B
B
11
10
2.932
-0.710
-0.188
-1.160
AA_G6C7:G10C11_BB
6
-3.149
4.305
42.828
-1.521
-0.024
3.119
35.689
A
A
7
8
1.147
B
B
10
9
3.113
0.702
0.795
-1.701
AA_C7C8:G9G10_BB
7
2.022
-3.300
35.627
-2.873
-1.018
database_2
pdbx_database_status
pdbx_entity_src_syn
pdbx_nmr_software
pdbx_nmr_spectrometer
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Other
Source and taxonomy
1
0
1997-10-15
1
1
2008-03-24
1
2
2011-07-13
1
3
2021-10-27
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
_pdbx_nmr_software.authors
_pdbx_nmr_software.classification
_pdbx_nmr_software.name
_pdbx_nmr_software.version
_pdbx_nmr_spectrometer.field_strength
_pdbx_nmr_spectrometer.manufacturer
_pdbx_nmr_spectrometer.model
Y
BNL
1997-05-17
REL
32630
synthetic construct
sample
PUBLISHED STRUCTURE GIVEN
11
1
NOESY
DQFCOSY
HETCOR
HMQC
7
308.15
K
RESTRAINED MOLECULAR DYNAMICS AND ENERGY MINIZATION
BRUNGER
refinement
X-PLOR
BRUNGER
structure calculation
X-PLOR
Accelrys Software Inc.
structure calculation
Insight II
Biosym
600
Bruker
AMX
400
Bruker
AMX
600
Varian
VXRS
G
1
n
1
G
1
A
G
2
n
2
G
2
A
C
3
n
3
C
3
A
G
4
n
4
G
4
A
A
5
n
5
A
5
A
G
6
n
6
G
6
A
C
7
n
7
C
7
A
C
8
n
8
C
8
A
G
9
n
1
G
9
B
G
10
n
2
G
10
B
C
11
n
3
C
11
B
G
12
n
4
G
12
B
A
13
n
5
A
13
B
G
14
n
6
G
14
B
C
15
n
7
C
15
B
C
16
n
8
C
16
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
identity operation
0.0000000000
0.0000000000
0.0000000000
model building
VNMR
model building
X-PLOR
refinement
X-PLOR
phasing
VNMR
phasing
X-PLOR
STRUCTURE OF (5'-R(GP*GP*CP*GP*AP*GP*CP*C)-3')2 BY 2-D NMR, 1 STRUCTURE
1
N
N
1
N
N
hydrog
WATSON-CRICK
A
G
1
A
N1
G
1
1_555
B
C
16
B
N3
C
8
1_555
hydrog
WATSON-CRICK
A
G
1
A
N2
G
1
1_555
B
C
16
B
O2
C
8
1_555
hydrog
WATSON-CRICK
A
G
1
A
O6
G
1
1_555
B
C
16
B
N4
C
8
1_555
hydrog
WATSON-CRICK
A
G
2
A
N1
G
2
1_555
B
C
15
B
N3
C
7
1_555
hydrog
WATSON-CRICK
A
G
2
A
N2
G
2
1_555
B
C
15
B
O2
C
7
1_555
hydrog
WATSON-CRICK
A
G
2
A
O6
G
2
1_555
B
C
15
B
N4
C
7
1_555
hydrog
WATSON-CRICK
A
C
3
A
N3
C
3
1_555
B
G
14
B
N1
G
6
1_555
hydrog
WATSON-CRICK
A
C
3
A
N4
C
3
1_555
B
G
14
B
O6
G
6
1_555
hydrog
WATSON-CRICK
A
C
3
A
O2
C
3
1_555
B
G
14
B
N2
G
6
1_555
hydrog
TYPE_11_PAIR
A
G
4
A
N2
G
4
1_555
B
A
13
B
N7
A
5
1_555
hydrog
TYPE_11_PAIR
A
G
4
A
N3
G
4
1_555
B
A
13
B
N6
A
5
1_555
hydrog
TYPE_11_PAIR
A
A
5
A
N6
A
5
1_555
B
G
12
B
N3
G
4
1_555
hydrog
TYPE_11_PAIR
A
A
5
A
N7
A
5
1_555
B
G
12
B
N2
G
4
1_555
hydrog
WATSON-CRICK
A
G
6
A
N1
G
6
1_555
B
C
11
B
N3
C
3
1_555
hydrog
WATSON-CRICK
A
G
6
A
N2
G
6
1_555
B
C
11
B
O2
C
3
1_555
hydrog
WATSON-CRICK
A
G
6
A
O6
G
6
1_555
B
C
11
B
N4
C
3
1_555
hydrog
WATSON-CRICK
A
C
7
A
N3
C
7
1_555
B
G
10
B
N1
G
2
1_555
hydrog
WATSON-CRICK
A
C
7
A
N4
C
7
1_555
B
G
10
B
O6
G
2
1_555
hydrog
WATSON-CRICK
A
C
7
A
O2
C
7
1_555
B
G
10
B
N2
G
2
1_555
hydrog
WATSON-CRICK
A
C
8
A
N3
C
8
1_555
B
G
9
B
N1
G
1
1_555
hydrog
WATSON-CRICK
A
C
8
A
N4
C
8
1_555
B
G
9
B
O6
G
1
1_555
hydrog
WATSON-CRICK
A
C
8
A
O2
C
8
1_555
B
G
9
B
N2
G
1
1_555
RNA
RIBONUCLEIC ACID, G:A MISMATCH, 2-D NMR, ANTI-PARALLEL RNA DUPLEX, RNA
1YFV
PDB
1
1YFV
1
8
1YFV
1
8
1YFV
A
1
1
8
9
16
1YFV
9
16
1YFV
B
1
1
8
1
P 1