0.010241
0.005913
0.000000
0.000000
0.011825
0.000000
0.000000
0.000000
0.012388
0.00000
0.00000
0.00000
Jacobs, M.D.
Black, J.
Futer, O.
Swenson, L.
Hare, B.
Fleming, M.
Saxena, K.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
97.647
97.647
80.725
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H11 N O3 S2
197.276
n
S,S-(2-HYDROXYETHYL)THIOCYSTEINE
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C19 H17 N O3
307.343
2-MORPHOLIN-4-YL-7-PHENYL-4H-CHROMEN-4-ONE
2-(4-MORPHOLINYL)-8-PHENYL-4H-1-BENZOPYRAN-4-ONE
non-polymer
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H8 N O6 P
185.072
n
PHOSPHOSERINE
PHOSPHONOSERINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
280
13728
13734
10.1074/jbc.M413155200
15657054
Pim-1 ligand-bound structures reveal the mechanism of serine/threonine kinase inhibition by LY294002.
2005
1.0000
0.0000
0.0000
0.0000
1.0000
0.0000
0.0000
0.0000
1.0000
0.0000
0.0000
0.0000
100
1
IMAGE PLATE
2001-01-01
RIGAKU RAXIS IV
Osmic mirrors
SINGLE WAVELENGTH
M
x-ray
1
1.54
1.0
1.54
ROTATING ANODE
RIGAKU RU200
31673.893
Proto-oncogene serine/threonine-protein kinase Pim-1
2.7.1.37
1
man
polymer
307.343
2-MORPHOLIN-4-YL-7-PHENYL-4H-CHROMEN-4-ONE
1
syn
non-polymer
18.015
water
134
nat
water
no
yes
PLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFER
PDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHN(CME)GVLHRDIKDENILIDLNRGELKLIDFG
SGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRVS(SEP)ECQ
HLIRWCLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLH
PLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFER
PDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGAL
LKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLIRWCLA
LRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLH
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
sample
PIM1
9606
Homo sapiens
562
Escherichia coli
BL21/DE3 pLysS
plasmid
pBEV1
1
3.51
64.93
VAPOR DIFFUSION, HANGING DROP
5.5
ammonium phosphate, citrate buffer, NaCl, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
software
repository
Initial release
Version format compliance
Version format compliance
Refinement description
1
0
2005-01-25
1
1
2008-04-30
1
2
2011-07-13
1
3
2017-10-11
RCSB
Y
RCSB
2005-01-11
REL
REL
LY2
2-MORPHOLIN-4-YL-7-PHENYL-4H-CHROMEN-4-ONE
HOH
water
LY2
201
2
LY2
LY2
306
A
HOH
1
3
HOH
HOH
307
A
HOH
2
3
HOH
HOH
308
A
HOH
3
3
HOH
HOH
309
A
HOH
4
3
HOH
HOH
310
A
HOH
5
3
HOH
HOH
311
A
HOH
6
3
HOH
HOH
312
A
HOH
7
3
HOH
HOH
313
A
HOH
8
3
HOH
HOH
314
A
HOH
9
3
HOH
HOH
315
A
HOH
10
3
HOH
HOH
316
A
HOH
12
3
HOH
HOH
317
A
HOH
13
3
HOH
HOH
318
A
HOH
14
3
HOH
HOH
319
A
HOH
15
3
HOH
HOH
320
A
HOH
16
3
HOH
HOH
321
A
HOH
18
3
HOH
HOH
322
A
HOH
19
3
HOH
HOH
323
A
HOH
20
3
HOH
HOH
324
A
HOH
21
3
HOH
HOH
325
A
HOH
22
3
HOH
HOH
326
A
HOH
23
3
HOH
HOH
327
A
HOH
24
3
HOH
HOH
328
A
HOH
25
3
HOH
HOH
329
A
HOH
26
3
HOH
HOH
330
A
HOH
27
3
HOH
HOH
331
A
HOH
28
3
HOH
HOH
332
A
HOH
29
3
HOH
HOH
333
A
HOH
30
3
HOH
HOH
334
A
HOH
31
3
HOH
HOH
335
A
HOH
33
3
HOH
HOH
336
A
HOH
34
3
HOH
HOH
337
A
HOH
35
3
HOH
HOH
338
A
HOH
37
3
HOH
HOH
339
A
HOH
38
3
HOH
HOH
340
A
HOH
39
3
HOH
HOH
341
A
HOH
40
3
HOH
HOH
342
A
HOH
42
3
HOH
HOH
343
A
HOH
44
3
HOH
HOH
344
A
HOH
46
3
HOH
HOH
345
A
HOH
48
3
HOH
HOH
346
A
HOH
49
3
HOH
HOH
347
A
HOH
50
3
HOH
HOH
348
A
HOH
51
3
HOH
HOH
349
A
HOH
52
3
HOH
HOH
350
A
HOH
56
3
HOH
HOH
351
A
HOH
59
3
HOH
HOH
352
A
HOH
60
3
HOH
HOH
353
A
HOH
61
3
HOH
HOH
354
A
HOH
63
3
HOH
HOH
355
A
HOH
64
3
HOH
HOH
356
A
HOH
65
3
HOH
HOH
357
A
HOH
67
3
HOH
HOH
358
A
HOH
69
3
HOH
HOH
359
A
HOH
71
3
HOH
HOH
360
A
HOH
72
3
HOH
HOH
361
A
HOH
74
3
HOH
HOH
362
A
HOH
76
3
HOH
HOH
363
A
HOH
77
3
HOH
HOH
364
A
HOH
78
3
HOH
HOH
365
A
HOH
79
3
HOH
HOH
366
A
HOH
83
3
HOH
HOH
367
A
HOH
84
3
HOH
HOH
368
A
HOH
85
3
HOH
HOH
369
A
HOH
86
3
HOH
HOH
370
A
HOH
87
3
HOH
HOH
371
A
HOH
88
3
HOH
HOH
372
A
HOH
89
3
HOH
HOH
373
A
HOH
90
3
HOH
HOH
374
A
HOH
91
3
HOH
HOH
375
A
HOH
92
3
HOH
HOH
376
A
HOH
93
3
HOH
HOH
377
A
HOH
94
3
HOH
HOH
378
A
HOH
96
3
HOH
HOH
379
A
HOH
97
3
HOH
HOH
380
A
HOH
99
3
HOH
HOH
381
A
HOH
100
3
HOH
HOH
382
A
HOH
101
3
HOH
HOH
383
A
HOH
102
3
HOH
HOH
384
A
HOH
103
3
HOH
HOH
385
A
HOH
104
3
HOH
HOH
386
A
HOH
105
3
HOH
HOH
387
A
HOH
106
3
HOH
HOH
388
A
HOH
107
3
HOH
HOH
389
A
HOH
108
3
HOH
HOH
390
A
HOH
110
3
HOH
HOH
391
A
HOH
112
3
HOH
HOH
392
A
HOH
113
3
HOH
HOH
393
A
HOH
114
3
HOH
HOH
394
A
HOH
115
3
HOH
HOH
395
A
HOH
116
3
HOH
HOH
396
A
HOH
117
3
HOH
HOH
397
A
HOH
118
3
HOH
HOH
398
A
HOH
119
3
HOH
HOH
399
A
HOH
120
3
HOH
HOH
400
A
HOH
121
3
HOH
HOH
401
A
HOH
124
3
HOH
HOH
402
A
HOH
125
3
HOH
HOH
403
A
HOH
126
3
HOH
HOH
404
A
HOH
127
3
HOH
HOH
405
A
HOH
128
3
HOH
HOH
406
A
HOH
129
3
HOH
HOH
407
A
HOH
130
3
HOH
HOH
408
A
HOH
131
3
HOH
HOH
409
A
HOH
132
3
HOH
HOH
410
A
HOH
133
3
HOH
HOH
411
A
HOH
134
3
HOH
HOH
412
A
HOH
135
3
HOH
HOH
413
A
HOH
136
3
HOH
HOH
414
A
HOH
137
3
HOH
HOH
415
A
HOH
138
3
HOH
HOH
416
A
HOH
140
3
HOH
HOH
417
A
HOH
141
3
HOH
HOH
418
A
HOH
143
3
HOH
HOH
419
A
HOH
145
3
HOH
HOH
420
A
HOH
146
3
HOH
HOH
421
A
HOH
148
3
HOH
HOH
422
A
HOH
149
3
HOH
HOH
423
A
HOH
151
3
HOH
HOH
424
A
HOH
152
3
HOH
HOH
425
A
HOH
153
3
HOH
HOH
426
A
HOH
154
3
HOH
HOH
427
A
HOH
155
3
HOH
HOH
428
A
HOH
156
3
HOH
HOH
429
A
HOH
157
3
HOH
HOH
430
A
HOH
158
3
HOH
HOH
431
A
HOH
159
3
HOH
HOH
432
A
HOH
160
3
HOH
HOH
433
A
HOH
161
3
HOH
HOH
434
A
HOH
162
3
HOH
HOH
435
A
HOH
163
3
HOH
HOH
436
A
HOH
164
3
HOH
HOH
437
A
HOH
165
3
HOH
HOH
438
A
HOH
166
3
HOH
HOH
439
A
HOH
167
3
HOH
HOH
440
A
PRO
33
n
1
PRO
33
A
LEU
34
n
2
LEU
34
A
GLU
35
n
3
GLU
35
A
SER
36
n
4
SER
36
A
GLN
37
n
5
GLN
37
A
TYR
38
n
6
TYR
38
A
GLN
39
n
7
GLN
39
A
VAL
40
n
8
VAL
40
A
GLY
41
n
9
GLY
41
A
PRO
42
n
10
PRO
42
A
LEU
43
n
11
LEU
43
A
LEU
44
n
12
LEU
44
A
GLY
45
n
13
GLY
45
A
SER
46
n
14
SER
46
A
GLY
47
n
15
GLY
47
A
GLY
48
n
16
GLY
48
A
PHE
49
n
17
PHE
49
A
GLY
50
n
18
GLY
50
A
SER
51
n
19
SER
51
A
VAL
52
n
20
VAL
52
A
TYR
53
n
21
TYR
53
A
SER
54
n
22
SER
54
A
GLY
55
n
23
GLY
55
A
ILE
56
n
24
ILE
56
A
ARG
57
n
25
ARG
57
A
VAL
58
n
26
VAL
58
A
SER
59
n
27
SER
59
A
ASP
60
n
28
ASP
60
A
ASN
61
n
29
ASN
61
A
LEU
62
n
30
LEU
62
A
PRO
63
n
31
PRO
63
A
VAL
64
n
32
VAL
64
A
ALA
65
n
33
ALA
65
A
ILE
66
n
34
ILE
66
A
LYS
67
n
35
LYS
67
A
HIS
68
n
36
HIS
68
A
VAL
69
n
37
VAL
69
A
GLU
70
n
38
GLU
70
A
LYS
71
n
39
LYS
71
A
ASP
72
n
40
ASP
72
A
ARG
73
n
41
ARG
73
A
ILE
74
n
42
ILE
74
A
SER
75
n
43
SER
75
A
ASP
76
n
44
ASP
76
A
TRP
77
n
45
TRP
77
A
GLY
78
n
46
GLY
78
A
GLU
79
n
47
GLU
79
A
n
48
80
A
n
49
81
A
n
50
82
A
n
51
83
A
THR
84
n
52
THR
84
A
ARG
85
n
53
ARG
85
A
VAL
86
n
54
VAL
86
A
PRO
87
n
55
PRO
87
A
MET
88
n
56
MET
88
A
GLU
89
n
57
GLU
89
A
VAL
90
n
58
VAL
90
A
VAL
91
n
59
VAL
91
A
LEU
92
n
60
LEU
92
A
LEU
93
n
61
LEU
93
A
LYS
94
n
62
LYS
94
A
LYS
95
n
63
LYS
95
A
VAL
96
n
64
VAL
96
A
SER
97
n
65
SER
97
A
SER
98
n
66
SER
98
A
GLY
99
n
67
GLY
99
A
PHE
100
n
68
PHE
100
A
SER
101
n
69
SER
101
A
GLY
102
n
70
GLY
102
A
VAL
103
n
71
VAL
103
A
ILE
104
n
72
ILE
104
A
ARG
105
n
73
ARG
105
A
LEU
106
n
74
LEU
106
A
LEU
107
n
75
LEU
107
A
ASP
108
n
76
ASP
108
A
TRP
109
n
77
TRP
109
A
PHE
110
n
78
PHE
110
A
GLU
111
n
79
GLU
111
A
ARG
112
n
80
ARG
112
A
PRO
113
n
81
PRO
113
A
ASP
114
n
82
ASP
114
A
SER
115
n
83
SER
115
A
PHE
116
n
84
PHE
116
A
VAL
117
n
85
VAL
117
A
LEU
118
n
86
LEU
118
A
ILE
119
n
87
ILE
119
A
LEU
120
n
88
LEU
120
A
GLU
121
n
89
GLU
121
A
ARG
122
n
90
ARG
122
A
PRO
123
n
91
PRO
123
A
GLU
124
n
92
GLU
124
A
PRO
125
n
93
PRO
125
A
VAL
126
n
94
VAL
126
A
GLN
127
n
95
GLN
127
A
ASP
128
n
96
ASP
128
A
LEU
129
n
97
LEU
129
A
PHE
130
n
98
PHE
130
A
ASP
131
n
99
ASP
131
A
PHE
132
n
100
PHE
132
A
ILE
133
n
101
ILE
133
A
THR
134
n
102
THR
134
A
GLU
135
n
103
GLU
135
A
ARG
136
n
104
ARG
136
A
GLY
137
n
105
GLY
137
A
ALA
138
n
106
ALA
138
A
LEU
139
n
107
LEU
139
A
GLN
140
n
108
GLN
140
A
GLU
141
n
109
GLU
141
A
GLU
142
n
110
GLU
142
A
LEU
143
n
111
LEU
143
A
ALA
144
n
112
ALA
144
A
ARG
145
n
113
ARG
145
A
SER
146
n
114
SER
146
A
PHE
147
n
115
PHE
147
A
PHE
148
n
116
PHE
148
A
TRP
149
n
117
TRP
149
A
GLN
150
n
118
GLN
150
A
VAL
151
n
119
VAL
151
A
LEU
152
n
120
LEU
152
A
GLU
153
n
121
GLU
153
A
ALA
154
n
122
ALA
154
A
VAL
155
n
123
VAL
155
A
ARG
156
n
124
ARG
156
A
HIS
157
n
125
HIS
157
A
CYS
158
n
126
CYS
158
A
HIS
159
n
127
HIS
159
A
ASN
160
n
128
ASN
160
A
CME
161
n
129
CME
161
A
GLY
162
n
130
GLY
162
A
VAL
163
n
131
VAL
163
A
LEU
164
n
132
LEU
164
A
HIS
165
n
133
HIS
165
A
ARG
166
n
134
ARG
166
A
ASP
167
n
135
ASP
167
A
ILE
168
n
136
ILE
168
A
LYS
169
n
137
LYS
169
A
ASP
170
n
138
ASP
170
A
GLU
171
n
139
GLU
171
A
ASN
172
n
140
ASN
172
A
ILE
173
n
141
ILE
173
A
LEU
174
n
142
LEU
174
A
ILE
175
n
143
ILE
175
A
ASP
176
n
144
ASP
176
A
LEU
177
n
145
LEU
177
A
ASN
178
n
146
ASN
178
A
ARG
179
n
147
ARG
179
A
GLY
180
n
148
GLY
180
A
GLU
181
n
149
GLU
181
A
LEU
182
n
150
LEU
182
A
LYS
183
n
151
LYS
183
A
LEU
184
n
152
LEU
184
A
ILE
185
n
153
ILE
185
A
ASP
186
n
154
ASP
186
A
PHE
187
n
155
PHE
187
A
GLY
188
n
156
GLY
188
A
SER
189
n
157
SER
189
A
GLY
190
n
158
GLY
190
A
ALA
191
n
159
ALA
191
A
LEU
192
n
160
LEU
192
A
LEU
193
n
161
LEU
193
A
LYS
194
n
162
LYS
194
A
ASP
195
n
163
ASP
195
A
THR
196
n
164
THR
196
A
VAL
197
n
165
VAL
197
A
TYR
198
n
166
TYR
198
A
THR
199
n
167
THR
199
A
ASP
200
n
168
ASP
200
A
PHE
201
n
169
PHE
201
A
ASP
202
n
170
ASP
202
A
GLY
203
n
171
GLY
203
A
THR
204
n
172
THR
204
A
ARG
205
n
173
ARG
205
A
VAL
206
n
174
VAL
206
A
TYR
207
n
175
TYR
207
A
SER
208
n
176
SER
208
A
PRO
209
n
177
PRO
209
A
PRO
210
n
178
PRO
210
A
GLU
211
n
179
GLU
211
A
TRP
212
n
180
TRP
212
A
ILE
213
n
181
ILE
213
A
ARG
214
n
182
ARG
214
A
TYR
215
n
183
TYR
215
A
HIS
216
n
184
HIS
216
A
ARG
217
n
185
ARG
217
A
TYR
218
n
186
TYR
218
A
HIS
219
n
187
HIS
219
A
GLY
220
n
188
GLY
220
A
ARG
221
n
189
ARG
221
A
SER
222
n
190
SER
222
A
ALA
223
n
191
ALA
223
A
ALA
224
n
192
ALA
224
A
VAL
225
n
193
VAL
225
A
TRP
226
n
194
TRP
226
A
SER
227
n
195
SER
227
A
LEU
228
n
196
LEU
228
A
GLY
229
n
197
GLY
229
A
ILE
230
n
198
ILE
230
A
LEU
231
n
199
LEU
231
A
LEU
232
n
200
LEU
232
A
TYR
233
n
201
TYR
233
A
ASP
234
n
202
ASP
234
A
MET
235
n
203
MET
235
A
VAL
236
n
204
VAL
236
A
CYS
237
n
205
CYS
237
A
GLY
238
n
206
GLY
238
A
ASP
239
n
207
ASP
239
A
ILE
240
n
208
ILE
240
A
PRO
241
n
209
PRO
241
A
PHE
242
n
210
PHE
242
A
GLU
243
n
211
GLU
243
A
HIS
244
n
212
HIS
244
A
ASP
245
n
213
ASP
245
A
GLU
246
n
214
GLU
246
A
GLU
247
n
215
GLU
247
A
ILE
248
n
216
ILE
248
A
ILE
249
n
217
ILE
249
A
ARG
250
n
218
ARG
250
A
GLY
251
n
219
GLY
251
A
GLN
252
n
220
GLN
252
A
VAL
253
n
221
VAL
253
A
PHE
254
n
222
PHE
254
A
PHE
255
n
223
PHE
255
A
ARG
256
n
224
ARG
256
A
GLN
257
n
225
GLN
257
A
ARG
258
n
226
ARG
258
A
VAL
259
n
227
VAL
259
A
SER
260
n
228
SER
260
A
SEP
261
n
229
SEP
261
A
GLU
262
n
230
GLU
262
A
CYS
263
n
231
CYS
263
A
GLN
264
n
232
GLN
264
A
HIS
265
n
233
HIS
265
A
LEU
266
n
234
LEU
266
A
ILE
267
n
235
ILE
267
A
ARG
268
n
236
ARG
268
A
TRP
269
n
237
TRP
269
A
CYS
270
n
238
CYS
270
A
LEU
271
n
239
LEU
271
A
ALA
272
n
240
ALA
272
A
LEU
273
n
241
LEU
273
A
ARG
274
n
242
ARG
274
A
PRO
275
n
243
PRO
275
A
SER
276
n
244
SER
276
A
ASP
277
n
245
ASP
277
A
ARG
278
n
246
ARG
278
A
PRO
279
n
247
PRO
279
A
THR
280
n
248
THR
280
A
PHE
281
n
249
PHE
281
A
GLU
282
n
250
GLU
282
A
GLU
283
n
251
GLU
283
A
ILE
284
n
252
ILE
284
A
GLN
285
n
253
GLN
285
A
ASN
286
n
254
ASN
286
A
HIS
287
n
255
HIS
287
A
PRO
288
n
256
PRO
288
A
TRP
289
n
257
TRP
289
A
MET
290
n
258
MET
290
A
GLN
291
n
259
GLN
291
A
ASP
292
n
260
ASP
292
A
VAL
293
n
261
VAL
293
A
LEU
294
n
262
LEU
294
A
LEU
295
n
263
LEU
295
A
PRO
296
n
264
PRO
296
A
GLN
297
n
265
GLN
297
A
GLU
298
n
266
GLU
298
A
THR
299
n
267
THR
299
A
ALA
300
n
268
ALA
300
A
GLU
301
n
269
GLU
301
A
ILE
302
n
270
ILE
302
A
HIS
303
n
271
HIS
303
A
LEU
304
n
272
LEU
304
A
HIS
305
n
273
HIS
305
A
author_defined_assembly
1
monomeric
A
CME
161
S,S-(2-HYDROXYETHYL)THIOCYSTEINE
A
CME
129
CYS
A
SEP
261
PHOSPHOSERINE
A
SEP
229
SER
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LEU
44
A
N
LEU
12
A
O
VAL
52
A
O
VAL
20
A
N
SER
51
A
N
SER
19
A
O
HIS
68
A
O
HIS
36
A
N
ALA
65
A
N
ALA
33
A
O
LEU
120
A
O
LEU
88
A
O
ILE
119
A
O
ILE
87
A
N
ASP
108
A
N
ASP
76
A
N
GLY
78
A
N
GLY
46
A
O
VAL
86
A
O
VAL
54
A
N
GLN
127
A
N
GLN
95
A
O
ILE
175
A
O
ILE
143
A
N
ASP
176
A
N
ASP
144
A
O
GLU
181
A
O
GLU
149
A
N
LEU
164
A
N
LEU
132
A
O
ALA
191
A
O
ALA
159
1
A
CG
GLU
79
A
CG
GLU
47
1
Y
1
A
CD
GLU
79
A
CD
GLU
47
1
Y
1
A
OE1
GLU
79
A
OE1
GLU
47
1
Y
1
A
OE2
GLU
79
A
OE2
GLU
47
1
Y
1
A
LEU
80
A
LEU
48
1
Y
1
A
PRO
81
A
PRO
49
1
Y
1
A
ASN
82
A
ASN
50
1
Y
1
A
GLY
83
A
GLY
51
1
Y
1
A
ASP
60
-156.74
18.30
1
A
VAL
96
-91.86
-70.31
1
A
SER
97
-7.44
-77.19
1
A
SER
98
-20.85
115.73
1
A
SER
101
172.51
179.27
1
A
ASP
167
-152.44
40.42
1
A
ASP
186
60.01
85.31
1
A
PHE
187
-95.12
30.71
38.000
5.250
7.800
0.000
5.250
0.000
-10.490
0.259
0.008
0.208
0.208
0.208
2.500
19.460
1097
14303
14303
7.700
93.400
RANDOM
207485.938
0.000
1
RESTRAINED
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
Engh & Huber
FLAT MODEL
34.336
0.344
0.380
0.300
5.000
0.540
0.490
2.500
19.460
134
2359
23
0
2202
0.009
1.2
22.2
0.72
0.341
0.026
0.336
2.660
166
1979
6
7.700
85.300
2.50
19.47
1YI3
14445
14445
2
2
0.072
0.950
1
12.0
3.05
445
94.9
0.336
2.50
2.59
2.6
749
1.130
87.6
data scaling
Pflugrath, J.W.
jwp@RigakuMSC.com
Feb 4 2003
http://www.msc.com/protein/dtrek.html
d*TREK
package
8.0SSI
refinement
Axel T. Brunger
axel.brunger@yale.edu
Fortran
http://cns.csb.yale.edu/v1.1/
CNS
package
data extraction
H.Yang
sw-help@rcsb.rutgers.edu
July 12, 2004
C++
http://pdb.rutgers.edu/software/
PDB_EXTRACT
program
1.501
phasing
AMoRE
Proto-oncogene serine/threonine-protein kinase Pim-1 (E.C.2.7.1.37)
Crystal Structure of Pim-1 bound to LY294002
1
N
N
2
N
N
3
N
N
A
PRO
33
A
PRO
1
HELX_P
A
GLN
37
A
GLN
5
1
1
5
A
ASP
72
A
ASP
40
HELX_P
A
ILE
74
A
ILE
42
5
2
3
A
MET
88
A
MET
56
HELX_P
A
SER
97
A
SER
65
1
3
10
A
LEU
129
A
LEU
97
HELX_P
A
GLY
137
A
GLY
105
1
4
9
A
GLN
140
A
GLN
108
HELX_P
A
CME
161
A
CME
129
1
5
22
A
LYS
169
A
LYS
137
HELX_P
A
GLU
171
A
GLU
139
5
6
3
A
THR
204
A
THR
172
HELX_P
A
SER
208
A
SER
176
5
7
5
A
PRO
209
A
PRO
177
HELX_P
A
HIS
216
A
HIS
184
1
8
8
A
HIS
219
A
HIS
187
HELX_P
A
GLY
238
A
GLY
206
1
9
20
A
HIS
244
A
HIS
212
HELX_P
A
GLY
251
A
GLY
219
1
10
8
A
SER
260
A
SER
228
HELX_P
A
LEU
271
A
LEU
239
1
11
12
A
ARG
274
A
ARG
242
HELX_P
A
ARG
278
A
ARG
246
5
12
5
A
THR
280
A
THR
248
HELX_P
A
ASN
286
A
ASN
254
1
13
7
A
HIS
287
A
HIS
255
HELX_P
A
GLN
291
A
GLN
259
5
14
5
A
LEU
295
A
LEU
263
HELX_P
A
LEU
304
A
LEU
272
1
15
10
covale
1.331
A
ASN
160
A
C
ASN
128
1_555
A
CME
161
A
N
CME
129
1_555
covale
1.330
A
CME
161
A
C
CME
129
1_555
A
GLY
162
A
N
GLY
130
1_555
covale
1.328
A
SER
260
A
C
SER
228
1_555
A
SEP
261
A
N
SEP
229
1_555
covale
1.326
A
SEP
261
A
C
SEP
229
1_555
A
GLU
262
A
N
GLU
230
1_555
TRANSFERASE
Protein kinase, PI3K, TRANSFERASE
A
GLU
124
A
GLU
92
1
A
PRO
125
A
PRO
93
-0.34
PIM1_HUMAN
UNP
1
33
P11309
PLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFER
PDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGAL
LKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLIRWCLA
LRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLH
33
305
1YI3
33
305
P11309
A
1
1
273
1
CYS
MODIFIED RESIDUE
CME
161
1YI3
A
P11309
UNP
161
129
1
SER
MODIFIED RESIDUE
SEP
261
1YI3
A
P11309
UNP
261
229
5
2
3
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
TYR
38
A
TYR
6
A
GLY
47
A
GLY
15
A
GLY
50
A
GLY
18
A
ARG
57
A
ARG
25
A
PRO
63
A
PRO
31
A
GLU
70
A
GLU
38
A
SER
115
A
SER
83
A
GLU
121
A
GLU
89
A
LEU
106
A
LEU
74
A
ARG
112
A
ARG
80
A
TRP
77
A
TRP
45
A
GLY
78
A
GLY
46
A
VAL
86
A
VAL
54
A
PRO
87
A
PRO
55
A
VAL
126
A
VAL
94
A
ASP
128
A
ASP
96
A
ILE
173
A
ILE
141
A
ASP
176
A
ASP
144
A
GLU
181
A
GLU
149
A
LEU
184
A
LEU
152
A
VAL
163
A
VAL
131
A
LEU
164
A
LEU
132
A
ALA
191
A
ALA
159
A
LEU
192
A
LEU
160
BINDING SITE FOR RESIDUE LY2 A 306
Software
11
A
LEU
44
A
LEU
12
11
1_555
A
GLY
45
A
GLY
13
11
1_555
A
PHE
49
A
PHE
17
11
1_555
A
VAL
52
A
VAL
20
11
1_555
A
LYS
67
A
LYS
35
11
1_555
A
ILE
104
A
ILE
72
11
1_555
A
LEU
120
A
LEU
88
11
1_555
A
GLU
121
A
GLU
89
11
1_555
A
ARG
122
A
ARG
90
11
1_555
A
LEU
174
A
LEU
142
11
1_555
A
HOH
325
C
HOH
11
1_555
170
P 65