0.010176
0.005875
0.000000
0.000000
0.011750
0.000000
0.000000
0.000000
0.012440
0.00000
0.00000
0.00000
Jacobs, M.D.
Black, J.
Futer, O.
Swenson, L.
Hare, B.
Fleming, M.
Saxena, K.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
98.269
98.269
80.386
C10 H13 N5 O4
267.241
ADENOSINE
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H11 N O3 S2
197.276
n
S,S-(2-HYDROXYETHYL)THIOCYSTEINE
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H8 N O6 P
185.072
n
PHOSPHOSERINE
PHOSPHONOSERINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
280
13728
13734
10.1074/jbc.M413155200
15657054
Pim-1 ligand-bound structures reveal the mechanism of serine/threonine kinase inhibition by LY294002.
2005
1.0000
0.0000
0.0000
0.0000
1.0000
0.0000
0.0000
0.0000
1.0000
0.0000
0.0000
0.0000
100
1
CCD
2002-09-02
ADSC QUANTUM 4
Double crystal Si(111)
SINGLE WAVELENGTH
M
x-ray
1
1.1
1.0
5.0.2
ALS
1.1
1.1
SYNCHROTRON
ALS BEAMLINE 5.0.2
31673.893
Proto-oncogene serine/threonine-protein kinase Pim-1
2.7.1.37
1
man
polymer
267.241
ADENOSINE
1
syn
non-polymer
18.015
water
81
nat
water
no
yes
PLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFER
PDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHN(CME)GVLHRDIKDENILIDLNRGELKLIDFG
SGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRVS(SEP)ECQ
HLIRWCLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLH
PLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFER
PDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGAL
LKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLIRWCLA
LRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLH
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
sample
PIM1
9606
Homo sapiens
562
Escherichia coli
BL21/DE3 pLysS
plasmid
pBEV1
1
3.54
65.23
VAPOR DIFFUSION, HANGING DROP
5.5
ammonium phosphate, citrate buffer, NaCl, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
repository
Initial release
Version format compliance
Version format compliance
1
0
2005-01-25
1
1
2008-04-30
1
2
2011-07-13
RCSB
Y
RCSB
2005-01-11
REL
REL
ADN
ADENOSINE
HOH
water
ADN
201
2
ADN
ADN
306
A
HOH
1
3
HOH
HOH
307
A
HOH
2
3
HOH
HOH
308
A
HOH
3
3
HOH
HOH
309
A
HOH
4
3
HOH
HOH
310
A
HOH
5
3
HOH
HOH
311
A
HOH
6
3
HOH
HOH
312
A
HOH
7
3
HOH
HOH
313
A
HOH
8
3
HOH
HOH
314
A
HOH
9
3
HOH
HOH
315
A
HOH
10
3
HOH
HOH
316
A
HOH
11
3
HOH
HOH
317
A
HOH
12
3
HOH
HOH
318
A
HOH
13
3
HOH
HOH
319
A
HOH
14
3
HOH
HOH
320
A
HOH
15
3
HOH
HOH
321
A
HOH
16
3
HOH
HOH
322
A
HOH
17
3
HOH
HOH
323
A
HOH
18
3
HOH
HOH
324
A
HOH
19
3
HOH
HOH
325
A
HOH
20
3
HOH
HOH
326
A
HOH
21
3
HOH
HOH
327
A
HOH
22
3
HOH
HOH
328
A
HOH
23
3
HOH
HOH
329
A
HOH
24
3
HOH
HOH
330
A
HOH
25
3
HOH
HOH
331
A
HOH
26
3
HOH
HOH
332
A
HOH
27
3
HOH
HOH
333
A
HOH
28
3
HOH
HOH
334
A
HOH
29
3
HOH
HOH
335
A
HOH
30
3
HOH
HOH
336
A
HOH
31
3
HOH
HOH
337
A
HOH
32
3
HOH
HOH
338
A
HOH
33
3
HOH
HOH
339
A
HOH
34
3
HOH
HOH
340
A
HOH
35
3
HOH
HOH
341
A
HOH
36
3
HOH
HOH
342
A
HOH
37
3
HOH
HOH
343
A
HOH
38
3
HOH
HOH
344
A
HOH
39
3
HOH
HOH
345
A
HOH
40
3
HOH
HOH
346
A
HOH
41
3
HOH
HOH
347
A
HOH
42
3
HOH
HOH
348
A
HOH
43
3
HOH
HOH
349
A
HOH
44
3
HOH
HOH
350
A
HOH
45
3
HOH
HOH
351
A
HOH
46
3
HOH
HOH
352
A
HOH
48
3
HOH
HOH
353
A
HOH
49
3
HOH
HOH
354
A
HOH
50
3
HOH
HOH
355
A
HOH
51
3
HOH
HOH
356
A
HOH
52
3
HOH
HOH
357
A
HOH
53
3
HOH
HOH
358
A
HOH
54
3
HOH
HOH
359
A
HOH
55
3
HOH
HOH
360
A
HOH
56
3
HOH
HOH
361
A
HOH
57
3
HOH
HOH
362
A
HOH
58
3
HOH
HOH
363
A
HOH
59
3
HOH
HOH
364
A
HOH
60
3
HOH
HOH
365
A
HOH
61
3
HOH
HOH
366
A
HOH
62
3
HOH
HOH
367
A
HOH
63
3
HOH
HOH
368
A
HOH
64
3
HOH
HOH
369
A
HOH
65
3
HOH
HOH
370
A
HOH
66
3
HOH
HOH
371
A
HOH
67
3
HOH
HOH
372
A
HOH
68
3
HOH
HOH
373
A
HOH
69
3
HOH
HOH
374
A
HOH
70
3
HOH
HOH
375
A
HOH
71
3
HOH
HOH
376
A
HOH
72
3
HOH
HOH
377
A
HOH
73
3
HOH
HOH
378
A
HOH
74
3
HOH
HOH
379
A
HOH
75
3
HOH
HOH
380
A
HOH
76
3
HOH
HOH
381
A
HOH
77
3
HOH
HOH
382
A
HOH
78
3
HOH
HOH
383
A
HOH
79
3
HOH
HOH
384
A
HOH
80
3
HOH
HOH
385
A
HOH
81
3
HOH
HOH
386
A
HOH
82
3
HOH
HOH
387
A
PRO
33
n
1
PRO
33
A
LEU
34
n
2
LEU
34
A
GLU
35
n
3
GLU
35
A
SER
36
n
4
SER
36
A
GLN
37
n
5
GLN
37
A
TYR
38
n
6
TYR
38
A
GLN
39
n
7
GLN
39
A
VAL
40
n
8
VAL
40
A
GLY
41
n
9
GLY
41
A
PRO
42
n
10
PRO
42
A
LEU
43
n
11
LEU
43
A
LEU
44
n
12
LEU
44
A
GLY
45
n
13
GLY
45
A
SER
46
n
14
SER
46
A
GLY
47
n
15
GLY
47
A
GLY
48
n
16
GLY
48
A
PHE
49
n
17
PHE
49
A
GLY
50
n
18
GLY
50
A
SER
51
n
19
SER
51
A
VAL
52
n
20
VAL
52
A
TYR
53
n
21
TYR
53
A
SER
54
n
22
SER
54
A
GLY
55
n
23
GLY
55
A
ILE
56
n
24
ILE
56
A
ARG
57
n
25
ARG
57
A
VAL
58
n
26
VAL
58
A
SER
59
n
27
SER
59
A
ASP
60
n
28
ASP
60
A
ASN
61
n
29
ASN
61
A
LEU
62
n
30
LEU
62
A
PRO
63
n
31
PRO
63
A
VAL
64
n
32
VAL
64
A
ALA
65
n
33
ALA
65
A
ILE
66
n
34
ILE
66
A
LYS
67
n
35
LYS
67
A
HIS
68
n
36
HIS
68
A
VAL
69
n
37
VAL
69
A
GLU
70
n
38
GLU
70
A
LYS
71
n
39
LYS
71
A
ASP
72
n
40
ASP
72
A
ARG
73
n
41
ARG
73
A
ILE
74
n
42
ILE
74
A
SER
75
n
43
SER
75
A
ASP
76
n
44
ASP
76
A
TRP
77
n
45
TRP
77
A
GLY
78
n
46
GLY
78
A
GLU
79
n
47
GLU
79
A
n
48
80
A
n
49
81
A
n
50
82
A
n
51
83
A
THR
84
n
52
THR
84
A
ARG
85
n
53
ARG
85
A
VAL
86
n
54
VAL
86
A
PRO
87
n
55
PRO
87
A
MET
88
n
56
MET
88
A
GLU
89
n
57
GLU
89
A
VAL
90
n
58
VAL
90
A
VAL
91
n
59
VAL
91
A
LEU
92
n
60
LEU
92
A
LEU
93
n
61
LEU
93
A
LYS
94
n
62
LYS
94
A
LYS
95
n
63
LYS
95
A
VAL
96
n
64
VAL
96
A
SER
97
n
65
SER
97
A
SER
98
n
66
SER
98
A
GLY
99
n
67
GLY
99
A
PHE
100
n
68
PHE
100
A
SER
101
n
69
SER
101
A
GLY
102
n
70
GLY
102
A
VAL
103
n
71
VAL
103
A
ILE
104
n
72
ILE
104
A
ARG
105
n
73
ARG
105
A
LEU
106
n
74
LEU
106
A
LEU
107
n
75
LEU
107
A
ASP
108
n
76
ASP
108
A
TRP
109
n
77
TRP
109
A
PHE
110
n
78
PHE
110
A
GLU
111
n
79
GLU
111
A
ARG
112
n
80
ARG
112
A
PRO
113
n
81
PRO
113
A
ASP
114
n
82
ASP
114
A
SER
115
n
83
SER
115
A
PHE
116
n
84
PHE
116
A
VAL
117
n
85
VAL
117
A
LEU
118
n
86
LEU
118
A
ILE
119
n
87
ILE
119
A
LEU
120
n
88
LEU
120
A
GLU
121
n
89
GLU
121
A
ARG
122
n
90
ARG
122
A
PRO
123
n
91
PRO
123
A
GLU
124
n
92
GLU
124
A
PRO
125
n
93
PRO
125
A
VAL
126
n
94
VAL
126
A
GLN
127
n
95
GLN
127
A
ASP
128
n
96
ASP
128
A
LEU
129
n
97
LEU
129
A
PHE
130
n
98
PHE
130
A
ASP
131
n
99
ASP
131
A
PHE
132
n
100
PHE
132
A
ILE
133
n
101
ILE
133
A
THR
134
n
102
THR
134
A
GLU
135
n
103
GLU
135
A
ARG
136
n
104
ARG
136
A
GLY
137
n
105
GLY
137
A
ALA
138
n
106
ALA
138
A
LEU
139
n
107
LEU
139
A
GLN
140
n
108
GLN
140
A
GLU
141
n
109
GLU
141
A
GLU
142
n
110
GLU
142
A
LEU
143
n
111
LEU
143
A
ALA
144
n
112
ALA
144
A
ARG
145
n
113
ARG
145
A
SER
146
n
114
SER
146
A
PHE
147
n
115
PHE
147
A
PHE
148
n
116
PHE
148
A
TRP
149
n
117
TRP
149
A
GLN
150
n
118
GLN
150
A
VAL
151
n
119
VAL
151
A
LEU
152
n
120
LEU
152
A
GLU
153
n
121
GLU
153
A
ALA
154
n
122
ALA
154
A
VAL
155
n
123
VAL
155
A
ARG
156
n
124
ARG
156
A
HIS
157
n
125
HIS
157
A
CYS
158
n
126
CYS
158
A
HIS
159
n
127
HIS
159
A
ASN
160
n
128
ASN
160
A
CME
161
n
129
CME
161
A
GLY
162
n
130
GLY
162
A
VAL
163
n
131
VAL
163
A
LEU
164
n
132
LEU
164
A
HIS
165
n
133
HIS
165
A
ARG
166
n
134
ARG
166
A
ASP
167
n
135
ASP
167
A
ILE
168
n
136
ILE
168
A
LYS
169
n
137
LYS
169
A
ASP
170
n
138
ASP
170
A
GLU
171
n
139
GLU
171
A
ASN
172
n
140
ASN
172
A
ILE
173
n
141
ILE
173
A
LEU
174
n
142
LEU
174
A
ILE
175
n
143
ILE
175
A
ASP
176
n
144
ASP
176
A
LEU
177
n
145
LEU
177
A
ASN
178
n
146
ASN
178
A
ARG
179
n
147
ARG
179
A
GLY
180
n
148
GLY
180
A
GLU
181
n
149
GLU
181
A
LEU
182
n
150
LEU
182
A
LYS
183
n
151
LYS
183
A
LEU
184
n
152
LEU
184
A
ILE
185
n
153
ILE
185
A
ASP
186
n
154
ASP
186
A
PHE
187
n
155
PHE
187
A
GLY
188
n
156
GLY
188
A
SER
189
n
157
SER
189
A
GLY
190
n
158
GLY
190
A
ALA
191
n
159
ALA
191
A
LEU
192
n
160
LEU
192
A
LEU
193
n
161
LEU
193
A
LYS
194
n
162
LYS
194
A
ASP
195
n
163
ASP
195
A
THR
196
n
164
THR
196
A
VAL
197
n
165
VAL
197
A
TYR
198
n
166
TYR
198
A
THR
199
n
167
THR
199
A
ASP
200
n
168
ASP
200
A
PHE
201
n
169
PHE
201
A
ASP
202
n
170
ASP
202
A
GLY
203
n
171
GLY
203
A
THR
204
n
172
THR
204
A
ARG
205
n
173
ARG
205
A
VAL
206
n
174
VAL
206
A
TYR
207
n
175
TYR
207
A
SER
208
n
176
SER
208
A
PRO
209
n
177
PRO
209
A
PRO
210
n
178
PRO
210
A
GLU
211
n
179
GLU
211
A
TRP
212
n
180
TRP
212
A
ILE
213
n
181
ILE
213
A
ARG
214
n
182
ARG
214
A
TYR
215
n
183
TYR
215
A
HIS
216
n
184
HIS
216
A
ARG
217
n
185
ARG
217
A
TYR
218
n
186
TYR
218
A
HIS
219
n
187
HIS
219
A
GLY
220
n
188
GLY
220
A
ARG
221
n
189
ARG
221
A
SER
222
n
190
SER
222
A
ALA
223
n
191
ALA
223
A
ALA
224
n
192
ALA
224
A
VAL
225
n
193
VAL
225
A
TRP
226
n
194
TRP
226
A
SER
227
n
195
SER
227
A
LEU
228
n
196
LEU
228
A
GLY
229
n
197
GLY
229
A
ILE
230
n
198
ILE
230
A
LEU
231
n
199
LEU
231
A
LEU
232
n
200
LEU
232
A
TYR
233
n
201
TYR
233
A
ASP
234
n
202
ASP
234
A
MET
235
n
203
MET
235
A
VAL
236
n
204
VAL
236
A
CYS
237
n
205
CYS
237
A
GLY
238
n
206
GLY
238
A
ASP
239
n
207
ASP
239
A
ILE
240
n
208
ILE
240
A
PRO
241
n
209
PRO
241
A
PHE
242
n
210
PHE
242
A
GLU
243
n
211
GLU
243
A
HIS
244
n
212
HIS
244
A
ASP
245
n
213
ASP
245
A
GLU
246
n
214
GLU
246
A
GLU
247
n
215
GLU
247
A
ILE
248
n
216
ILE
248
A
ILE
249
n
217
ILE
249
A
ARG
250
n
218
ARG
250
A
GLY
251
n
219
GLY
251
A
GLN
252
n
220
GLN
252
A
VAL
253
n
221
VAL
253
A
PHE
254
n
222
PHE
254
A
PHE
255
n
223
PHE
255
A
ARG
256
n
224
ARG
256
A
GLN
257
n
225
GLN
257
A
ARG
258
n
226
ARG
258
A
VAL
259
n
227
VAL
259
A
SER
260
n
228
SER
260
A
SEP
261
n
229
SEP
261
A
GLU
262
n
230
GLU
262
A
CYS
263
n
231
CYS
263
A
GLN
264
n
232
GLN
264
A
HIS
265
n
233
HIS
265
A
LEU
266
n
234
LEU
266
A
ILE
267
n
235
ILE
267
A
ARG
268
n
236
ARG
268
A
TRP
269
n
237
TRP
269
A
CYS
270
n
238
CYS
270
A
LEU
271
n
239
LEU
271
A
ALA
272
n
240
ALA
272
A
LEU
273
n
241
LEU
273
A
ARG
274
n
242
ARG
274
A
PRO
275
n
243
PRO
275
A
SER
276
n
244
SER
276
A
ASP
277
n
245
ASP
277
A
ARG
278
n
246
ARG
278
A
PRO
279
n
247
PRO
279
A
THR
280
n
248
THR
280
A
PHE
281
n
249
PHE
281
A
GLU
282
n
250
GLU
282
A
GLU
283
n
251
GLU
283
A
ILE
284
n
252
ILE
284
A
GLN
285
n
253
GLN
285
A
ASN
286
n
254
ASN
286
A
HIS
287
n
255
HIS
287
A
PRO
288
n
256
PRO
288
A
TRP
289
n
257
TRP
289
A
MET
290
n
258
MET
290
A
GLN
291
n
259
GLN
291
A
ASP
292
n
260
ASP
292
A
VAL
293
n
261
VAL
293
A
LEU
294
n
262
LEU
294
A
LEU
295
n
263
LEU
295
A
PRO
296
n
264
PRO
296
A
GLN
297
n
265
GLN
297
A
GLU
298
n
266
GLU
298
A
THR
299
n
267
THR
299
A
ALA
300
n
268
ALA
300
A
GLU
301
n
269
GLU
301
A
ILE
302
n
270
ILE
302
A
HIS
303
n
271
HIS
303
A
LEU
304
n
272
LEU
304
A
HIS
305
n
273
HIS
305
A
author_defined_assembly
1
monomeric
A
CME
161
S,S-(2-HYDROXYETHYL)THIOCYSTEINE
A
CME
129
CYS
A
SEP
261
PHOSPHOSERINE
A
SEP
229
SER
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
PRO
42
A
N
PRO
10
A
O
SER
54
A
O
SER
22
A
N
TYR
53
A
N
TYR
21
A
O
ILE
66
A
O
ILE
34
A
N
ALA
65
A
N
ALA
33
A
O
LEU
120
A
O
LEU
88
A
O
SER
115
A
O
SER
83
A
N
ARG
112
A
N
ARG
80
A
N
GLY
78
A
N
GLY
46
A
O
VAL
86
A
O
VAL
54
A
N
GLN
127
A
N
GLN
95
A
O
ILE
175
A
O
ILE
143
A
N
ASP
176
A
N
ASP
144
A
O
GLU
181
A
O
GLU
149
A
N
LEU
164
A
N
LEU
132
A
O
ALA
191
A
O
ALA
159
1
A
CG
GLU
79
A
CG
GLU
47
1
Y
1
A
CD
GLU
79
A
CD
GLU
47
1
Y
1
A
OE1
GLU
79
A
OE1
GLU
47
1
Y
1
A
OE2
GLU
79
A
OE2
GLU
47
1
Y
1
A
LEU
80
A
LEU
48
1
Y
1
A
PRO
81
A
PRO
49
1
Y
1
A
ASN
82
A
ASN
50
1
Y
1
A
GLY
83
A
GLY
51
1
Y
1
A
GLU
35
-69.91
59.71
1
A
SER
36
-176.84
-35.91
1
A
PHE
49
-170.66
-12.13
1
A
SER
59
167.53
-22.04
1
A
ASP
60
-166.57
11.60
1
A
ASN
61
48.75
29.12
1
A
SER
97
-96.02
39.97
1
A
PHE
100
-36.85
124.52
1
A
ARG
166
69.57
-1.62
1
A
ASP
167
-142.70
44.16
1
A
ASP
186
59.13
80.78
1
A
PHE
201
-165.00
118.47
1
A
ASP
239
179.83
153.69
48.000
3.120
7.230
0.000
3.120
0.000
-6.230
0.246
0.007
0.21
0.21
0.21
2.400
19.530
1268
16420
16420
7.900
93.200
RANDOM
112636.891
0.000
1
RESTRAINED
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
Engh & Huber
FLAT MODEL
38.754
0.339
0.350
0.290
5.000
0.330
0.280
2.400
19.530
81
2302
19
0
2202
0.007
1.3
22.8
0.73
0.306
0.022
0.273
2.550
193
2496
6
7.200
93.800
2.40
19.56
1YI4
16430
16430
2
2
0.06
0.980
1
14.7
5.19
1739
94.3
0.361
2.40
2.49
3.9
62
1.320
96.1
data processing
Pflugrath, J.W.
jwp@RigakuMSC.com
Feb 4 2003
http://www.msc.com/protein/dtrek.html
d*TREK
package
8.0SSI
refinement
Axel T. Brunger
axel.brunger@yale.edu
Fortran
http://cns.csb.yale.edu/v1.1/
CNS
package
data extraction
H.Yang
sw-help@rcsb.rutgers.edu
July 12, 2004
C++
http://pdb.rutgers.edu/software/
PDB_EXTRACT
program
1.501
data reduction
DENZO
data scaling
d*TREK
phasing
AMoRE
Proto-oncogene serine/threonine-protein kinase Pim-1 (E.C.2.7.1.37)
Structure of Pim-1 bound to adenosine
1
N
N
2
N
N
3
N
N
A
PRO
33
A
PRO
1
HELX_P
A
GLN
37
A
GLN
5
1
1
5
A
ASP
72
A
ASP
40
HELX_P
A
ILE
74
A
ILE
42
5
2
3
A
MET
88
A
MET
56
HELX_P
A
SER
97
A
SER
65
1
3
10
A
LEU
129
A
LEU
97
HELX_P
A
GLY
137
A
GLY
105
1
4
9
A
GLN
140
A
GLN
108
HELX_P
A
CME
161
A
CME
129
1
5
22
A
LYS
169
A
LYS
137
HELX_P
A
GLU
171
A
GLU
139
5
6
3
A
THR
204
A
THR
172
HELX_P
A
SER
208
A
SER
176
5
7
5
A
PRO
209
A
PRO
177
HELX_P
A
HIS
216
A
HIS
184
1
8
8
A
HIS
219
A
HIS
187
HELX_P
A
GLY
238
A
GLY
206
1
9
20
A
HIS
244
A
HIS
212
HELX_P
A
GLY
251
A
GLY
219
1
10
8
A
SER
260
A
SER
228
HELX_P
A
LEU
271
A
LEU
239
1
11
12
A
ARG
274
A
ARG
242
HELX_P
A
ARG
278
A
ARG
246
5
12
5
A
THR
280
A
THR
248
HELX_P
A
ASN
286
A
ASN
254
1
13
7
A
HIS
287
A
HIS
255
HELX_P
A
GLN
291
A
GLN
259
5
14
5
A
LEU
295
A
LEU
263
HELX_P
A
LEU
304
A
LEU
272
1
15
10
covale
1.331
A
ASN
160
A
C
ASN
128
1_555
A
CME
161
A
N
CME
129
1_555
covale
1.333
A
CME
161
A
C
CME
129
1_555
A
GLY
162
A
N
GLY
130
1_555
covale
1.329
A
SER
260
A
C
SER
228
1_555
A
SEP
261
A
N
SEP
229
1_555
covale
1.328
A
SEP
261
A
C
SEP
229
1_555
A
GLU
262
A
N
GLU
230
1_555
TRANSFERASE
Protein kinase, proto oncogene, TRANSFERASE
A
GLU
124
A
GLU
92
1
A
PRO
125
A
PRO
93
-0.19
PIM1_HUMAN
UNP
1
33
P11309
PLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFER
PDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGAL
LKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLIRWCLA
LRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLH
33
305
1YI4
33
305
P11309
A
1
1
273
1
CYS
MODIFIED RESIDUE
CME
161
1YI4
A
P11309
UNP
161
129
1
SER
MODIFIED RESIDUE
SEP
261
1YI4
A
P11309
UNP
261
229
5
2
3
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
TYR
38
A
TYR
6
A
GLY
47
A
GLY
15
A
GLY
50
A
GLY
18
A
ARG
57
A
ARG
25
A
PRO
63
A
PRO
31
A
GLU
70
A
GLU
38
A
SER
115
A
SER
83
A
GLU
121
A
GLU
89
A
LEU
106
A
LEU
74
A
ARG
112
A
ARG
80
A
TRP
77
A
TRP
45
A
GLY
78
A
GLY
46
A
VAL
86
A
VAL
54
A
PRO
87
A
PRO
55
A
VAL
126
A
VAL
94
A
ASP
128
A
ASP
96
A
ILE
173
A
ILE
141
A
ASP
176
A
ASP
144
A
GLU
181
A
GLU
149
A
LEU
184
A
LEU
152
A
VAL
163
A
VAL
131
A
LEU
164
A
LEU
132
A
ALA
191
A
ALA
159
A
LEU
192
A
LEU
160
BINDING SITE FOR RESIDUE ADN A 306
Software
8
A
PHE
49
A
PHE
17
8
1_555
A
ILE
104
A
ILE
72
8
1_555
A
GLU
121
A
GLU
89
8
1_555
A
ASP
128
A
ASP
96
8
1_555
A
LEU
174
A
LEU
142
8
1_555
A
HOH
373
C
HOH
8
1_555
A
HOH
386
C
HOH
8
1_555
A
HOH
387
C
HOH
8
1_555
170
P 65