0.017760 0.000000 0.000000 0.000000 0.017760 0.000000 0.000000 0.000000 0.003646 0.00000 0.00000 0.00000 Turner, S.J. Kedzierska, K. Komodromou, H. La Gruta, N.L. Dunstone, M.A. Webb, A.I. Webby, R. Walden, H. Xie, W. McCluskey, J. Purcell, A.W. Rossjohn, J. Doherty, P.C. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 56.306 56.306 274.272 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK Nat.Immunol. 1529-2908 6 382 389 10.1038/ni1175 15785764 Lack of prominent peptide-major histocompatibility complex features limits repertoire diversity in virus-specific CD8+ T cell populations 2005 10.2210/pdb1yn7/pdb pdb_00001yn7 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 IMAGE PLATE 2004-03-01 RIGAKU RAXIS IV SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU 31804.420 H-2 class I histocompatibility antigen, D-B alpha chain 1 man polymer 11835.555 Beta-2-microglobulin 1 man polymer 1100.179 10-mer peptide from RNA-directed RNA polymerase subunit P2 2.7.7.48 R7A 1 syn polymer 18.015 water 236 nat water H- 2DB Polymerase acidic protein, PA no no PHSMRYFETAVSRPGLEEPRYISVGYVDNKEFVRFDSDAENPRYEPRAPWMEQEGPEYWERETQKAKGQEQWFRVSLRNL LGYYNQSAGGSHTLQQMSGCDLGSDWRLLRGYLQFAYEGRDYIALNEDLKTWTAADMAAQITRRKWEQSGAAEHYKAYLE GECVEWLHRYLKNGNATLLRTDSPKAHVTHHPRSKGEVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTF QKWASVVVPLGKEQNYTCRVYHEGLPEPLTLRW PHSMRYFETAVSRPGLEEPRYISVGYVDNKEFVRFDSDAENPRYEPRAPWMEQEGPEYWERETQKAKGQEQWFRVSLRNL LGYYNQSAGGSHTLQQMSGCDLGSDWRLLRGYLQFAYEGRDYIALNEDLKTWTAADMAAQITRRKWEQSGAAEHYKAYLE GECVEWLHRYLKNGNATLLRTDSPKAHVTHHPRSKGEVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTF QKWASVVVPLGKEQNYTCRVYHEGLPEPLTLRW A polypeptide(L) no no MIQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYA CRVKHDSMAEPKTVYWDRDM MIQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYA CRVKHDSMAEPKTVYWDRDM B polypeptide(L) no no SSLENFAAYV SSLENFAAYV C polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n house mouse Mus Escherichia sample 10090 Mus musculus 562 Escherichia coli XLBlue plasmid pET30 house mouse Mus Escherichia sample 10090 Mus musculus 562 Escherichia coli XLBlue plasmid pET30 1 2.43 53.6 VAPOR DIFFUSION, HANGING DROP 5.6 sodium citrate, ammonium acetate, PEG 4000, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 database_2 struct_ref_seq_dif repository Initial release Version format compliance Version format compliance Database references 1 0 2005-06-28 1 1 2008-04-30 1 2 2011-07-13 1 3 2021-11-10 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details Wildtype sequence of the peptide RCSB Y PDBJ 2005-01-24 REL HOH water Synthetic peptide with similar sequence as influenza A acid polymerase fragment sample HOH 1 4 HOH HOH 275 A HOH 2 4 HOH HOH 276 A HOH 4 4 HOH HOH 277 A HOH 6 4 HOH HOH 278 A HOH 7 4 HOH HOH 279 A HOH 9 4 HOH HOH 280 A HOH 11 4 HOH HOH 281 A HOH 12 4 HOH HOH 282 A HOH 17 4 HOH HOH 283 A HOH 20 4 HOH HOH 284 A HOH 22 4 HOH HOH 285 A HOH 24 4 HOH HOH 286 A HOH 26 4 HOH HOH 287 A HOH 27 4 HOH HOH 288 A HOH 28 4 HOH HOH 289 A HOH 29 4 HOH HOH 290 A HOH 31 4 HOH HOH 291 A HOH 32 4 HOH HOH 292 A HOH 33 4 HOH HOH 293 A HOH 34 4 HOH HOH 294 A HOH 35 4 HOH HOH 295 A HOH 36 4 HOH HOH 296 A HOH 37 4 HOH HOH 297 A HOH 38 4 HOH HOH 298 A HOH 39 4 HOH HOH 299 A HOH 40 4 HOH HOH 300 A HOH 41 4 HOH HOH 301 A HOH 42 4 HOH HOH 302 A HOH 43 4 HOH HOH 303 A HOH 45 4 HOH HOH 304 A HOH 48 4 HOH HOH 305 A HOH 51 4 HOH HOH 306 A HOH 52 4 HOH HOH 307 A HOH 54 4 HOH HOH 308 A HOH 56 4 HOH HOH 309 A HOH 59 4 HOH HOH 310 A HOH 60 4 HOH HOH 311 A HOH 63 4 HOH HOH 312 A HOH 65 4 HOH HOH 313 A HOH 67 4 HOH HOH 314 A HOH 68 4 HOH HOH 315 A HOH 69 4 HOH HOH 316 A HOH 71 4 HOH HOH 317 A HOH 72 4 HOH HOH 318 A HOH 73 4 HOH HOH 319 A HOH 74 4 HOH HOH 320 A HOH 76 4 HOH HOH 321 A HOH 78 4 HOH HOH 322 A HOH 79 4 HOH HOH 323 A HOH 80 4 HOH HOH 324 A HOH 82 4 HOH HOH 325 A HOH 83 4 HOH HOH 326 A HOH 84 4 HOH HOH 327 A HOH 85 4 HOH HOH 328 A HOH 86 4 HOH HOH 329 A HOH 87 4 HOH HOH 330 A HOH 90 4 HOH HOH 331 A HOH 91 4 HOH HOH 332 A HOH 92 4 HOH HOH 333 A HOH 93 4 HOH HOH 334 A HOH 94 4 HOH HOH 335 A HOH 95 4 HOH HOH 336 A HOH 96 4 HOH HOH 337 A HOH 97 4 HOH HOH 338 A HOH 100 4 HOH HOH 339 A HOH 101 4 HOH HOH 340 A HOH 102 4 HOH HOH 341 A HOH 103 4 HOH HOH 342 A HOH 104 4 HOH HOH 343 A HOH 105 4 HOH HOH 344 A HOH 109 4 HOH HOH 345 A HOH 111 4 HOH HOH 346 A HOH 112 4 HOH HOH 347 A HOH 113 4 HOH HOH 348 A HOH 116 4 HOH HOH 349 A HOH 117 4 HOH HOH 350 A HOH 118 4 HOH HOH 351 A HOH 121 4 HOH HOH 352 A HOH 122 4 HOH HOH 353 A HOH 123 4 HOH HOH 354 A HOH 124 4 HOH HOH 355 A HOH 125 4 HOH HOH 356 A HOH 126 4 HOH HOH 357 A HOH 128 4 HOH HOH 358 A HOH 130 4 HOH HOH 359 A HOH 131 4 HOH HOH 360 A HOH 132 4 HOH HOH 361 A HOH 133 4 HOH HOH 362 A HOH 134 4 HOH HOH 363 A HOH 135 4 HOH HOH 364 A HOH 136 4 HOH HOH 365 A HOH 140 4 HOH HOH 366 A HOH 141 4 HOH HOH 367 A HOH 142 4 HOH HOH 368 A HOH 143 4 HOH HOH 369 A HOH 144 4 HOH HOH 370 A HOH 146 4 HOH HOH 371 A HOH 148 4 HOH HOH 372 A HOH 149 4 HOH HOH 373 A HOH 152 4 HOH HOH 374 A HOH 153 4 HOH HOH 375 A HOH 154 4 HOH HOH 376 A HOH 157 4 HOH HOH 377 A HOH 158 4 HOH HOH 378 A HOH 159 4 HOH HOH 379 A HOH 160 4 HOH HOH 380 A HOH 161 4 HOH HOH 381 A HOH 165 4 HOH HOH 382 A HOH 166 4 HOH HOH 383 A HOH 167 4 HOH HOH 384 A HOH 168 4 HOH HOH 385 A HOH 169 4 HOH HOH 386 A HOH 170 4 HOH HOH 387 A HOH 173 4 HOH HOH 388 A HOH 174 4 HOH HOH 389 A HOH 175 4 HOH HOH 390 A HOH 176 4 HOH HOH 391 A HOH 177 4 HOH HOH 392 A HOH 178 4 HOH HOH 393 A HOH 179 4 HOH HOH 394 A HOH 181 4 HOH HOH 395 A HOH 182 4 HOH HOH 396 A HOH 184 4 HOH HOH 397 A HOH 185 4 HOH HOH 398 A HOH 186 4 HOH HOH 399 A HOH 189 4 HOH HOH 400 A HOH 190 4 HOH HOH 401 A HOH 191 4 HOH HOH 402 A HOH 193 4 HOH HOH 403 A HOH 194 4 HOH HOH 404 A HOH 195 4 HOH HOH 405 A HOH 196 4 HOH HOH 406 A HOH 199 4 HOH HOH 407 A HOH 200 4 HOH HOH 408 A HOH 201 4 HOH HOH 409 A HOH 202 4 HOH HOH 410 A HOH 203 4 HOH HOH 411 A HOH 206 4 HOH HOH 412 A HOH 209 4 HOH HOH 413 A HOH 210 4 HOH HOH 414 A HOH 211 4 HOH HOH 415 A HOH 212 4 HOH HOH 416 A HOH 213 4 HOH HOH 417 A HOH 214 4 HOH HOH 418 A HOH 218 4 HOH HOH 419 A HOH 220 4 HOH HOH 420 A HOH 222 4 HOH HOH 421 A HOH 223 4 HOH HOH 422 A HOH 226 4 HOH HOH 423 A HOH 227 4 HOH HOH 424 A HOH 228 4 HOH HOH 425 A HOH 229 4 HOH HOH 426 A HOH 230 4 HOH HOH 427 A HOH 231 4 HOH HOH 428 A HOH 233 4 HOH HOH 429 A HOH 236 4 HOH HOH 430 A HOH 3 4 HOH HOH 100 B HOH 8 4 HOH HOH 101 B HOH 10 4 HOH HOH 102 B HOH 13 4 HOH HOH 103 B HOH 14 4 HOH HOH 104 B HOH 15 4 HOH HOH 105 B HOH 16 4 HOH HOH 106 B HOH 18 4 HOH HOH 107 B HOH 19 4 HOH HOH 108 B HOH 21 4 HOH HOH 109 B HOH 23 4 HOH HOH 110 B HOH 25 4 HOH HOH 111 B HOH 30 4 HOH HOH 112 B HOH 44 4 HOH HOH 113 B HOH 46 4 HOH HOH 114 B HOH 47 4 HOH HOH 115 B HOH 49 4 HOH HOH 116 B HOH 50 4 HOH HOH 117 B HOH 53 4 HOH HOH 118 B HOH 55 4 HOH HOH 119 B HOH 57 4 HOH HOH 120 B HOH 58 4 HOH HOH 121 B HOH 61 4 HOH HOH 122 B HOH 62 4 HOH HOH 123 B HOH 64 4 HOH HOH 124 B HOH 70 4 HOH HOH 125 B HOH 75 4 HOH HOH 126 B HOH 77 4 HOH HOH 127 B HOH 81 4 HOH HOH 128 B HOH 88 4 HOH HOH 129 B HOH 89 4 HOH HOH 130 B HOH 98 4 HOH HOH 131 B HOH 99 4 HOH HOH 132 B HOH 106 4 HOH HOH 133 B HOH 108 4 HOH HOH 134 B HOH 110 4 HOH HOH 135 B HOH 114 4 HOH HOH 136 B HOH 115 4 HOH HOH 137 B HOH 119 4 HOH HOH 138 B HOH 120 4 HOH HOH 139 B HOH 127 4 HOH HOH 140 B HOH 129 4 HOH HOH 141 B HOH 137 4 HOH HOH 142 B HOH 138 4 HOH HOH 143 B HOH 139 4 HOH HOH 144 B HOH 147 4 HOH HOH 145 B HOH 150 4 HOH HOH 146 B HOH 151 4 HOH HOH 147 B HOH 155 4 HOH HOH 148 B HOH 156 4 HOH HOH 149 B HOH 162 4 HOH HOH 150 B HOH 163 4 HOH HOH 151 B HOH 164 4 HOH HOH 152 B HOH 171 4 HOH HOH 153 B HOH 172 4 HOH HOH 154 B HOH 180 4 HOH HOH 155 B HOH 183 4 HOH HOH 156 B HOH 187 4 HOH HOH 157 B HOH 188 4 HOH HOH 158 B HOH 192 4 HOH HOH 159 B HOH 197 4 HOH HOH 160 B HOH 198 4 HOH HOH 161 B HOH 204 4 HOH HOH 162 B HOH 205 4 HOH HOH 163 B HOH 207 4 HOH HOH 164 B HOH 208 4 HOH HOH 165 B HOH 215 4 HOH HOH 166 B HOH 217 4 HOH HOH 167 B HOH 219 4 HOH HOH 168 B HOH 221 4 HOH HOH 169 B HOH 224 4 HOH HOH 170 B HOH 225 4 HOH HOH 171 B HOH 232 4 HOH HOH 172 B HOH 234 4 HOH HOH 173 B HOH 235 4 HOH HOH 174 B HOH 5 4 HOH HOH 11 C HOH 66 4 HOH HOH 12 C HOH 107 4 HOH HOH 13 C HOH 145 4 HOH HOH 14 C HOH 216 4 HOH HOH 15 C PRO 2 n 1 PRO 2 A HIS 3 n 2 HIS 3 A SER 4 n 3 SER 4 A MET 5 n 4 MET 5 A ARG 6 n 5 ARG 6 A TYR 7 n 6 TYR 7 A PHE 8 n 7 PHE 8 A GLU 9 n 8 GLU 9 A THR 10 n 9 THR 10 A ALA 11 n 10 ALA 11 A VAL 12 n 11 VAL 12 A SER 13 n 12 SER 13 A ARG 14 n 13 ARG 14 A PRO 15 n 14 PRO 15 A GLY 16 n 15 GLY 16 A LEU 17 n 16 LEU 17 A GLU 18 n 17 GLU 18 A GLU 19 n 18 GLU 19 A PRO 20 n 19 PRO 20 A ARG 21 n 20 ARG 21 A TYR 22 n 21 TYR 22 A ILE 23 n 22 ILE 23 A SER 24 n 23 SER 24 A VAL 25 n 24 VAL 25 A GLY 26 n 25 GLY 26 A TYR 27 n 26 TYR 27 A VAL 28 n 27 VAL 28 A ASP 29 n 28 ASP 29 A ASN 30 n 29 ASN 30 A LYS 31 n 30 LYS 31 A GLU 32 n 31 GLU 32 A PHE 33 n 32 PHE 33 A VAL 34 n 33 VAL 34 A ARG 35 n 34 ARG 35 A PHE 36 n 35 PHE 36 A ASP 37 n 36 ASP 37 A SER 38 n 37 SER 38 A ASP 39 n 38 ASP 39 A ALA 40 n 39 ALA 40 A ALA 41 n 40 GLU 41 A ASN 42 n 41 ASN 42 A PRO 43 n 42 PRO 43 A ARG 44 n 43 ARG 44 A TYR 45 n 44 TYR 45 A GLU 46 n 45 GLU 46 A PRO 47 n 46 PRO 47 A ARG 48 n 47 ARG 48 A ALA 49 n 48 ALA 49 A PRO 50 n 49 PRO 50 A TRP 51 n 50 TRP 51 A MET 52 n 51 MET 52 A GLU 53 n 52 GLU 53 A GLN 54 n 53 GLN 54 A GLU 55 n 54 GLU 55 A GLY 56 n 55 GLY 56 A PRO 57 n 56 PRO 57 A GLU 58 n 57 GLU 58 A TYR 59 n 58 TYR 59 A TRP 60 n 59 TRP 60 A GLU 61 n 60 GLU 61 A ARG 62 n 61 ARG 62 A GLU 63 n 62 GLU 63 A THR 64 n 63 THR 64 A GLN 65 n 64 GLN 65 A LYS 66 n 65 LYS 66 A ALA 67 n 66 ALA 67 A LYS 68 n 67 LYS 68 A GLY 69 n 68 GLY 69 A GLN 70 n 69 GLN 70 A GLU 71 n 70 GLU 71 A GLN 72 n 71 GLN 72 A TRP 73 n 72 TRP 73 A PHE 74 n 73 PHE 74 A ARG 75 n 74 ARG 75 A VAL 76 n 75 VAL 76 A SER 77 n 76 SER 77 A LEU 78 n 77 LEU 78 A ARG 79 n 78 ARG 79 A ASN 80 n 79 ASN 80 A LEU 81 n 80 LEU 81 A LEU 82 n 81 LEU 82 A GLY 83 n 82 GLY 83 A TYR 84 n 83 TYR 84 A TYR 85 n 84 TYR 85 A ASN 86 n 85 ASN 86 A GLN 87 n 86 GLN 87 A SER 88 n 87 SER 88 A ALA 89 n 88 ALA 89 A GLY 90 n 89 GLY 90 A GLY 91 n 90 GLY 91 A SER 92 n 91 SER 92 A HIS 93 n 92 HIS 93 A THR 94 n 93 THR 94 A LEU 95 n 94 LEU 95 A GLN 96 n 95 GLN 96 A GLN 97 n 96 GLN 97 A MET 98 n 97 MET 98 A SER 99 n 98 SER 99 A GLY 100 n 99 GLY 100 A CYS 101 n 100 CYS 101 A ASP 102 n 101 ASP 102 A LEU 103 n 102 LEU 103 A GLY 104 n 103 GLY 104 A SER 105 n 104 SER 105 A ASP 106 n 105 ASP 106 A TRP 107 n 106 TRP 107 A ARG 108 n 107 ARG 108 A LEU 109 n 108 LEU 109 A LEU 110 n 109 LEU 110 A ARG 111 n 110 ARG 111 A GLY 112 n 111 GLY 112 A TYR 113 n 112 TYR 113 A LEU 114 n 113 LEU 114 A GLN 115 n 114 GLN 115 A PHE 116 n 115 PHE 116 A ALA 117 n 116 ALA 117 A TYR 118 n 117 TYR 118 A GLU 119 n 118 GLU 119 A GLY 120 n 119 GLY 120 A ARG 121 n 120 ARG 121 A ASP 122 n 121 ASP 122 A TYR 123 n 122 TYR 123 A ILE 124 n 123 ILE 124 A ALA 125 n 124 ALA 125 A LEU 126 n 125 LEU 126 A ASN 127 n 126 ASN 127 A GLU 128 n 127 GLU 128 A ASP 129 n 128 ASP 129 A LEU 130 n 129 LEU 130 A LYS 131 n 130 LYS 131 A THR 132 n 131 THR 132 A TRP 133 n 132 TRP 133 A THR 134 n 133 THR 134 A ALA 135 n 134 ALA 135 A ALA 136 n 135 ALA 136 A ASP 137 n 136 ASP 137 A MET 138 n 137 MET 138 A ALA 139 n 138 ALA 139 A ALA 140 n 139 ALA 140 A GLN 141 n 140 GLN 141 A ILE 142 n 141 ILE 142 A THR 143 n 142 THR 143 A ARG 144 n 143 ARG 144 A ARG 145 n 144 ARG 145 A LYS 146 n 145 LYS 146 A TRP 147 n 146 TRP 147 A GLU 148 n 147 GLU 148 A GLN 149 n 148 GLN 149 A SER 150 n 149 SER 150 A GLY 151 n 150 GLY 151 A ALA 152 n 151 ALA 152 A ALA 153 n 152 ALA 153 A GLU 154 n 153 GLU 154 A HIS 155 n 154 HIS 155 A TYR 156 n 155 TYR 156 A LYS 157 n 156 LYS 157 A ALA 158 n 157 ALA 158 A TYR 159 n 158 TYR 159 A LEU 160 n 159 LEU 160 A GLU 161 n 160 GLU 161 A GLY 162 n 161 GLY 162 A GLU 163 n 162 GLU 163 A CYS 164 n 163 CYS 164 A VAL 165 n 164 VAL 165 A GLU 166 n 165 GLU 166 A TRP 167 n 166 TRP 167 A LEU 168 n 167 LEU 168 A HIS 169 n 168 HIS 169 A ARG 170 n 169 ARG 170 A TYR 171 n 170 TYR 171 A LEU 172 n 171 LEU 172 A LYS 173 n 172 LYS 173 A ASN 174 n 173 ASN 174 A GLY 175 n 174 GLY 175 A ASN 176 n 175 ASN 176 A ALA 177 n 176 ALA 177 A THR 178 n 177 THR 178 A LEU 179 n 178 LEU 179 A LEU 180 n 179 LEU 180 A ARG 181 n 180 ARG 181 A THR 182 n 181 THR 182 A ASP 183 n 182 ASP 183 A SER 184 n 183 SER 184 A PRO 185 n 184 PRO 185 A LYS 186 n 185 LYS 186 A ALA 187 n 186 ALA 187 A HIS 188 n 187 HIS 188 A VAL 189 n 188 VAL 189 A THR 190 n 189 THR 190 A HIS 191 n 190 HIS 191 A HIS 192 n 191 HIS 192 A PRO 193 n 192 PRO 193 A ARG 194 n 193 ARG 194 A SER 195 n 194 SER 195 A LYS 196 n 195 LYS 196 A GLY 197 n 196 GLY 197 A GLU 198 n 197 GLU 198 A VAL 199 n 198 VAL 199 A THR 200 n 199 THR 200 A LEU 201 n 200 LEU 201 A ARG 202 n 201 ARG 202 A CYS 203 n 202 CYS 203 A TRP 204 n 203 TRP 204 A ALA 205 n 204 ALA 205 A LEU 206 n 205 LEU 206 A GLY 207 n 206 GLY 207 A PHE 208 n 207 PHE 208 A TYR 209 n 208 TYR 209 A PRO 210 n 209 PRO 210 A ALA 211 n 210 ALA 211 A ASP 212 n 211 ASP 212 A ILE 213 n 212 ILE 213 A THR 214 n 213 THR 214 A LEU 215 n 214 LEU 215 A THR 216 n 215 THR 216 A TRP 217 n 216 TRP 217 A GLN 218 n 217 GLN 218 A LEU 219 n 218 LEU 219 A ASN 220 n 219 ASN 220 A GLY 221 n 220 GLY 221 A GLU 222 n 221 GLU 222 A GLU 223 n 222 GLU 223 A LEU 224 n 223 LEU 224 A THR 225 n 224 THR 225 A GLN 226 n 225 GLN 226 A ASP 227 n 226 ASP 227 A MET 228 n 227 MET 228 A GLU 229 n 228 GLU 229 A LEU 230 n 229 LEU 230 A VAL 231 n 230 VAL 231 A GLU 232 n 231 GLU 232 A THR 233 n 232 THR 233 A ARG 234 n 233 ARG 234 A PRO 235 n 234 PRO 235 A ALA 236 n 235 ALA 236 A GLY 237 n 236 GLY 237 A ASP 238 n 237 ASP 238 A GLY 239 n 238 GLY 239 A THR 240 n 239 THR 240 A PHE 241 n 240 PHE 241 A GLN 242 n 241 GLN 242 A LYS 243 n 242 LYS 243 A TRP 244 n 243 TRP 244 A ALA 245 n 244 ALA 245 A SER 246 n 245 SER 246 A VAL 247 n 246 VAL 247 A VAL 248 n 247 VAL 248 A VAL 249 n 248 VAL 249 A PRO 250 n 249 PRO 250 A LEU 251 n 250 LEU 251 A GLY 252 n 251 GLY 252 A LYS 253 n 252 LYS 253 A GLU 254 n 253 GLU 254 A GLN 255 n 254 GLN 255 A ASN 256 n 255 ASN 256 A TYR 257 n 256 TYR 257 A THR 258 n 257 THR 258 A CYS 259 n 258 CYS 259 A ARG 260 n 259 ARG 260 A VAL 261 n 260 VAL 261 A TYR 262 n 261 TYR 262 A HIS 263 n 262 HIS 263 A GLU 264 n 263 GLU 264 A GLY 265 n 264 GLY 265 A LEU 266 n 265 LEU 266 A PRO 267 n 266 PRO 267 A GLU 268 n 267 GLU 268 A PRO 269 n 268 PRO 269 A LEU 270 n 269 LEU 270 A THR 271 n 270 THR 271 A LEU 272 n 271 LEU 272 A ARG 273 n 272 ARG 273 A TRP 274 n 273 TRP 274 A ALA 0 n 1 MET 0 B ILE 1 n 2 ILE 1 B GLN 2 n 3 GLN 2 B LYS 3 n 4 LYS 3 B THR 4 n 5 THR 4 B PRO 5 n 6 PRO 5 B GLN 6 n 7 GLN 6 B ILE 7 n 8 ILE 7 B GLN 8 n 9 GLN 8 B VAL 9 n 10 VAL 9 B TYR 10 n 11 TYR 10 B SER 11 n 12 SER 11 B ARG 12 n 13 ARG 12 B HIS 13 n 14 HIS 13 B PRO 14 n 15 PRO 14 B PRO 15 n 16 PRO 15 B GLU 16 n 17 GLU 16 B ASN 17 n 18 ASN 17 B GLY 18 n 19 GLY 18 B LYS 19 n 20 LYS 19 B PRO 20 n 21 PRO 20 B ASN 21 n 22 ASN 21 B ILE 22 n 23 ILE 22 B LEU 23 n 24 LEU 23 B ASN 24 n 25 ASN 24 B CYS 25 n 26 CYS 25 B TYR 26 n 27 TYR 26 B VAL 27 n 28 VAL 27 B THR 28 n 29 THR 28 B GLN 29 n 30 GLN 29 B PHE 30 n 31 PHE 30 B HIS 31 n 32 HIS 31 B PRO 32 n 33 PRO 32 B PRO 33 n 34 PRO 33 B HIS 34 n 35 HIS 34 B ILE 35 n 36 ILE 35 B GLU 36 n 37 GLU 36 B ILE 37 n 38 ILE 37 B GLN 38 n 39 GLN 38 B MET 39 n 40 MET 39 B LEU 40 n 41 LEU 40 B LYS 41 n 42 LYS 41 B ASN 42 n 43 ASN 42 B GLY 43 n 44 GLY 43 B LYS 44 n 45 LYS 44 B LYS 45 n 46 LYS 45 B ILE 46 n 47 ILE 46 B PRO 47 n 48 PRO 47 B LYS 48 n 49 LYS 48 B VAL 49 n 50 VAL 49 B GLU 50 n 51 GLU 50 B MET 51 n 52 MET 51 B SER 52 n 53 SER 52 B ASP 53 n 54 ASP 53 B MET 54 n 55 MET 54 B SER 55 n 56 SER 55 B PHE 56 n 57 PHE 56 B SER 57 n 58 SER 57 B LYS 58 n 59 LYS 58 B ASP 59 n 60 ASP 59 B TRP 60 n 61 TRP 60 B SER 61 n 62 SER 61 B PHE 62 n 63 PHE 62 B TYR 63 n 64 TYR 63 B ILE 64 n 65 ILE 64 B LEU 65 n 66 LEU 65 B ALA 66 n 67 ALA 66 B HIS 67 n 68 HIS 67 B THR 68 n 69 THR 68 B GLU 69 n 70 GLU 69 B PHE 70 n 71 PHE 70 B THR 71 n 72 THR 71 B PRO 72 n 73 PRO 72 B THR 73 n 74 THR 73 B GLU 74 n 75 GLU 74 B THR 75 n 76 THR 75 B ASP 76 n 77 ASP 76 B THR 77 n 78 THR 77 B TYR 78 n 79 TYR 78 B ALA 79 n 80 ALA 79 B CYS 80 n 81 CYS 80 B ARG 81 n 82 ARG 81 B VAL 82 n 83 VAL 82 B LYS 83 n 84 LYS 83 B HIS 84 n 85 HIS 84 B ALA 85 n 86 ASP 85 B SER 86 n 87 SER 86 B MET 87 n 88 MET 87 B ALA 88 n 89 ALA 88 B GLU 89 n 90 GLU 89 B PRO 90 n 91 PRO 90 B LYS 91 n 92 LYS 91 B THR 92 n 93 THR 92 B VAL 93 n 94 VAL 93 B TYR 94 n 95 TYR 94 B TRP 95 n 96 TRP 95 B ASP 96 n 97 ASP 96 B ARG 97 n 98 ARG 97 B ASP 98 n 99 ASP 98 B MET 99 n 100 MET 99 B SER 1 n 1 SER 1 C SER 2 n 2 SER 2 C LEU 3 n 3 LEU 3 C GLU 4 n 4 GLU 4 C ASN 5 n 5 ASN 5 C PHE 6 n 6 PHE 6 C ALA 7 n 7 ALA 7 C ALA 8 n 8 ALA 8 C TYR 9 n 9 TYR 9 C VAL 10 n 10 VAL 10 C author_and_software_defined_assembly PISA 3 trimeric 4300 -18 18880 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O GLU 46 A O GLU 45 A N ARG 35 A N ARG 34 A O PHE 36 A O PHE 35 A N SER 24 A N SER 23 A O TYR 27 A O TYR 26 A N ARG 6 A N ARG 5 A N GLU 9 A N GLU 8 A O GLN 97 A O GLN 96 A N ASP 102 A N ASP 101 A O LEU 110 A O LEU 109 A N LEU 114 A N LEU 113 A O LEU 126 A O LEU 125 A N ALA 125 A N ALA 124 A O THR 134 A O THR 133 A N HIS 192 A N HIS 191 A O THR 200 A O THR 199 A N CYS 203 A N CYS 202 A O ALA 245 A O ALA 244 A O SER 246 A O SER 245 A N GLU 229 A N GLU 228 A N HIS 192 A N HIS 191 A O THR 200 A O THR 199 A N CYS 203 A N CYS 202 A O ALA 245 A O ALA 244 A O GLN 242 A O GLN 241 A N ARG 234 A N ARG 233 A O GLU 222 A O GLU 221 A N LEU 219 A N LEU 218 A N THR 214 A N THR 213 A O TYR 262 A O TYR 261 A N CYS 259 A N CYS 258 A O LEU 272 A O LEU 271 B N TYR 10 B N TYR 11 B O ASN 24 B O ASN 25 B N CYS 25 B N CYS 26 B O ALA 66 B O ALA 67 B O HIS 67 B O HIS 68 B N GLU 50 B N GLU 51 B N TYR 10 B N TYR 11 B O ASN 24 B O ASN 25 B N CYS 25 B N CYS 26 B O ALA 66 B O ALA 67 B O TYR 63 B O TYR 64 B N SER 55 B N SER 56 B O LYS 44 B O LYS 45 B N LYS 41 B N LYS 42 B N LEU 40 B N LEU 41 B O ALA 79 B O ALA 80 B N VAL 82 B N VAL 83 B O LYS 91 B O LYS 92 1 A HOH 309 D HOH 1 A HOH 357 D HOH 1 A CG GLU 41 A CG GLU 40 1 Y 1 A CD GLU 41 A CD GLU 40 1 Y 1 A OE1 GLU 41 A OE1 GLU 40 1 Y 1 A OE2 GLU 41 A OE2 GLU 40 1 Y 1 B CG MET 0 B CG MET 1 1 Y 1 B SD MET 0 B SD MET 1 1 Y 1 B CE MET 0 B CE MET 1 1 Y 1 B CG ASP 85 B CG ASP 86 1 Y 1 B OD1 ASP 85 B OD1 ASP 86 1 Y 1 B OD2 ASP 85 B OD2 ASP 86 1 Y 1 A TRP 51 -55.68 -1.24 1 A TRP 107 -44.44 8.27 1 A LEU 114 -160.28 107.36 1 A TYR 123 -110.89 -71.11 1 A LYS 131 -132.00 -38.90 1 A ARG 194 -137.10 -69.34 1 A LYS 253 -143.33 13.87 1 B TRP 60 84.67 -18.42 0.2645 0.2174 2.2 50 929 22053 21124 random 1 2 MOLECULAR REPLACEMENT Engh & Huber 2.2 50 236 3378 0 0 3142 0.006079 1.32223 20.75685 24.77357 2.2 100 1YN7 23606 22053 2 2 0.107 1 5.6 93.4 2.2 2.28 92.1 data collection HKL-2000 data scaling SCALEPACK phasing AMoRE refinement CNS 1.0 data reduction HKL-2000 Crystal structure of a mouse MHC class I protein, H2-Db, in complex with a mutated peptide (R7A) of the influenza A acid polymerase 1 N N 2 N N 3 N N 4 N N 4 N N 4 N N A ALA 49 A ALA 48 HELX_P A GLU 53 A GLU 52 5 1 5 A GLY 56 A GLY 55 HELX_P A TYR 85 A TYR 84 1 2 30 A ASP 137 A ASP 136 HELX_P A GLY 151 A GLY 150 1 3 15 A GLY 151 A GLY 150 HELX_P A GLY 162 A GLY 161 1 4 12 A GLY 162 A GLY 161 HELX_P A GLY 175 A GLY 174 1 5 14 A GLY 175 A GLY 174 HELX_P A LEU 180 A LEU 179 1 6 6 A LYS 253 A LYS 252 HELX_P A GLN 255 A GLN 254 5 7 3 disulf 2.034 A CYS 101 A SG CYS 100 1_555 A CYS 164 A SG CYS 163 1_555 disulf 2.028 A CYS 203 A SG CYS 202 1_555 A CYS 259 A SG CYS 258 1_555 disulf 2.038 B CYS 25 B SG CYS 26 1_555 B CYS 80 B SG CYS 81 1_555 IMMUNE SYSTEM MHC class 1, H2-Db, influenza A, peptide of acid polymerase, IMMUNE SYSTEM A TYR 209 A TYR 208 1 A PRO 210 A PRO 209 -0.32 B HIS 31 B HIS 32 1 B PRO 32 B PRO 33 0.59 HA11_MOUSE UNP 1 26 P01899 PHSMRYFETAVSRPGLEEPRYISVGYVDNKEFVRFDSDAENPRYEPRAPWMEQEGPEYWERETQKAKGQEQWFRVSLRNL LGYYNQSAGGSHTLQQMSGCDLGSDWRLLRGYLQFAYEGRDYIALNEDLKTWTAADMAAQITRRKWEQSGAAEHYKAYLE GECVEWLHRYLKNGNATLLRTDSPKAHVTHHPRSKGEVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTF QKWASVVVPLGKEQNYTCRVYHEGLPEPLTLRW B2MG_MOUSE UNP 2 21 P01887 IQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYAC RVKHDSMAEPKTVYWDRDM RRP2_IAZI1 UNP 3 224 P13175 SSLENFRAYV 26 298 1YN7 2 274 P01899 A 1 1 273 21 119 1YN7 1 99 P01887 B 2 2 100 224 233 1YN7 1 10 P13175 C 3 1 10 2 initiating methionine MET 0 1YN7 B P01887 UNP 1 3 ARG engineered mutation ALA 7 1YN7 C P13175 UNP 230 7 8 4 4 4 4 4 4 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A GLU 46 A GLU 45 A PRO 47 A PRO 46 A LYS 31 A LYS 30 A ASP 37 A ASP 36 A ARG 21 A ARG 20 A VAL 28 A VAL 27 A SER 4 A SER 3 A VAL 12 A VAL 11 A THR 94 A THR 93 A LEU 103 A LEU 102 A LEU 109 A LEU 108 A TYR 118 A TYR 117 A ARG 121 A ARG 120 A LEU 126 A LEU 125 A TRP 133 A TRP 132 A ALA 135 A ALA 134 A LYS 186 A LYS 185 A SER 195 A SER 194 A GLU 198 A GLU 197 A PHE 208 A PHE 207 A PHE 241 A PHE 240 A PRO 250 A PRO 249 A GLU 229 A GLU 228 A LEU 230 A LEU 229 A LYS 186 A LYS 185 A SER 195 A SER 194 A GLU 198 A GLU 197 A PHE 208 A PHE 207 A PHE 241 A PHE 240 A PRO 250 A PRO 249 A ARG 234 A ARG 233 A PRO 235 A PRO 234 A GLU 222 A GLU 221 A GLU 223 A GLU 222 A THR 214 A THR 213 A LEU 219 A LEU 218 A TYR 257 A TYR 256 A TYR 262 A TYR 261 A LEU 270 A LEU 269 A LEU 272 A LEU 271 B GLN 6 B GLN 7 B SER 11 B SER 12 B ASN 21 B ASN 22 B PHE 30 B PHE 31 B PHE 62 B PHE 63 B PHE 70 B PHE 71 B GLU 50 B GLU 51 B MET 51 B MET 52 B GLN 6 B GLN 7 B SER 11 B SER 12 B ASN 21 B ASN 22 B PHE 30 B PHE 31 B PHE 62 B PHE 63 B PHE 70 B PHE 71 B SER 55 B SER 56 B PHE 56 B PHE 57 B LYS 44 B LYS 45 B LYS 45 B LYS 46 B GLU 36 B GLU 37 B LYS 41 B LYS 42 B TYR 78 B TYR 79 B LYS 83 B LYS 84 B LYS 91 B LYS 92 B TYR 94 B TYR 95 96 P 43 21 2