0.017760
0.000000
0.000000
0.000000
0.017760
0.000000
0.000000
0.000000
0.003646
0.00000
0.00000
0.00000
Turner, S.J.
Kedzierska, K.
Komodromou, H.
La Gruta, N.L.
Dunstone, M.A.
Webb, A.I.
Webby, R.
Walden, H.
Xie, W.
McCluskey, J.
Purcell, A.W.
Rossjohn, J.
Doherty, P.C.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
56.306
56.306
274.272
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
Nat.Immunol.
1529-2908
6
382
389
10.1038/ni1175
15785764
Lack of prominent peptide-major histocompatibility complex features limits repertoire diversity in virus-specific CD8+ T cell populations
2005
10.2210/pdb1yn7/pdb
pdb_00001yn7
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
IMAGE PLATE
2004-03-01
RIGAKU RAXIS IV
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU
31804.420
H-2 class I histocompatibility antigen, D-B alpha chain
1
man
polymer
11835.555
Beta-2-microglobulin
1
man
polymer
1100.179
10-mer peptide from RNA-directed RNA polymerase subunit P2
2.7.7.48
R7A
1
syn
polymer
18.015
water
236
nat
water
H- 2DB
Polymerase acidic protein, PA
no
no
PHSMRYFETAVSRPGLEEPRYISVGYVDNKEFVRFDSDAENPRYEPRAPWMEQEGPEYWERETQKAKGQEQWFRVSLRNL
LGYYNQSAGGSHTLQQMSGCDLGSDWRLLRGYLQFAYEGRDYIALNEDLKTWTAADMAAQITRRKWEQSGAAEHYKAYLE
GECVEWLHRYLKNGNATLLRTDSPKAHVTHHPRSKGEVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTF
QKWASVVVPLGKEQNYTCRVYHEGLPEPLTLRW
PHSMRYFETAVSRPGLEEPRYISVGYVDNKEFVRFDSDAENPRYEPRAPWMEQEGPEYWERETQKAKGQEQWFRVSLRNL
LGYYNQSAGGSHTLQQMSGCDLGSDWRLLRGYLQFAYEGRDYIALNEDLKTWTAADMAAQITRRKWEQSGAAEHYKAYLE
GECVEWLHRYLKNGNATLLRTDSPKAHVTHHPRSKGEVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTF
QKWASVVVPLGKEQNYTCRVYHEGLPEPLTLRW
A
polypeptide(L)
no
no
MIQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYA
CRVKHDSMAEPKTVYWDRDM
MIQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYA
CRVKHDSMAEPKTVYWDRDM
B
polypeptide(L)
no
no
SSLENFAAYV
SSLENFAAYV
C
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
house mouse
Mus
Escherichia
sample
10090
Mus musculus
562
Escherichia coli
XLBlue
plasmid
pET30
house mouse
Mus
Escherichia
sample
10090
Mus musculus
562
Escherichia coli
XLBlue
plasmid
pET30
1
2.43
53.6
VAPOR DIFFUSION, HANGING DROP
5.6
sodium citrate, ammonium acetate, PEG 4000, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
database_2
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Database references
1
0
2005-06-28
1
1
2008-04-30
1
2
2011-07-13
1
3
2021-11-10
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
Wildtype sequence of the peptide
RCSB
Y
PDBJ
2005-01-24
REL
HOH
water
Synthetic peptide with similar sequence as influenza A acid polymerase fragment
sample
HOH
1
4
HOH
HOH
275
A
HOH
2
4
HOH
HOH
276
A
HOH
4
4
HOH
HOH
277
A
HOH
6
4
HOH
HOH
278
A
HOH
7
4
HOH
HOH
279
A
HOH
9
4
HOH
HOH
280
A
HOH
11
4
HOH
HOH
281
A
HOH
12
4
HOH
HOH
282
A
HOH
17
4
HOH
HOH
283
A
HOH
20
4
HOH
HOH
284
A
HOH
22
4
HOH
HOH
285
A
HOH
24
4
HOH
HOH
286
A
HOH
26
4
HOH
HOH
287
A
HOH
27
4
HOH
HOH
288
A
HOH
28
4
HOH
HOH
289
A
HOH
29
4
HOH
HOH
290
A
HOH
31
4
HOH
HOH
291
A
HOH
32
4
HOH
HOH
292
A
HOH
33
4
HOH
HOH
293
A
HOH
34
4
HOH
HOH
294
A
HOH
35
4
HOH
HOH
295
A
HOH
36
4
HOH
HOH
296
A
HOH
37
4
HOH
HOH
297
A
HOH
38
4
HOH
HOH
298
A
HOH
39
4
HOH
HOH
299
A
HOH
40
4
HOH
HOH
300
A
HOH
41
4
HOH
HOH
301
A
HOH
42
4
HOH
HOH
302
A
HOH
43
4
HOH
HOH
303
A
HOH
45
4
HOH
HOH
304
A
HOH
48
4
HOH
HOH
305
A
HOH
51
4
HOH
HOH
306
A
HOH
52
4
HOH
HOH
307
A
HOH
54
4
HOH
HOH
308
A
HOH
56
4
HOH
HOH
309
A
HOH
59
4
HOH
HOH
310
A
HOH
60
4
HOH
HOH
311
A
HOH
63
4
HOH
HOH
312
A
HOH
65
4
HOH
HOH
313
A
HOH
67
4
HOH
HOH
314
A
HOH
68
4
HOH
HOH
315
A
HOH
69
4
HOH
HOH
316
A
HOH
71
4
HOH
HOH
317
A
HOH
72
4
HOH
HOH
318
A
HOH
73
4
HOH
HOH
319
A
HOH
74
4
HOH
HOH
320
A
HOH
76
4
HOH
HOH
321
A
HOH
78
4
HOH
HOH
322
A
HOH
79
4
HOH
HOH
323
A
HOH
80
4
HOH
HOH
324
A
HOH
82
4
HOH
HOH
325
A
HOH
83
4
HOH
HOH
326
A
HOH
84
4
HOH
HOH
327
A
HOH
85
4
HOH
HOH
328
A
HOH
86
4
HOH
HOH
329
A
HOH
87
4
HOH
HOH
330
A
HOH
90
4
HOH
HOH
331
A
HOH
91
4
HOH
HOH
332
A
HOH
92
4
HOH
HOH
333
A
HOH
93
4
HOH
HOH
334
A
HOH
94
4
HOH
HOH
335
A
HOH
95
4
HOH
HOH
336
A
HOH
96
4
HOH
HOH
337
A
HOH
97
4
HOH
HOH
338
A
HOH
100
4
HOH
HOH
339
A
HOH
101
4
HOH
HOH
340
A
HOH
102
4
HOH
HOH
341
A
HOH
103
4
HOH
HOH
342
A
HOH
104
4
HOH
HOH
343
A
HOH
105
4
HOH
HOH
344
A
HOH
109
4
HOH
HOH
345
A
HOH
111
4
HOH
HOH
346
A
HOH
112
4
HOH
HOH
347
A
HOH
113
4
HOH
HOH
348
A
HOH
116
4
HOH
HOH
349
A
HOH
117
4
HOH
HOH
350
A
HOH
118
4
HOH
HOH
351
A
HOH
121
4
HOH
HOH
352
A
HOH
122
4
HOH
HOH
353
A
HOH
123
4
HOH
HOH
354
A
HOH
124
4
HOH
HOH
355
A
HOH
125
4
HOH
HOH
356
A
HOH
126
4
HOH
HOH
357
A
HOH
128
4
HOH
HOH
358
A
HOH
130
4
HOH
HOH
359
A
HOH
131
4
HOH
HOH
360
A
HOH
132
4
HOH
HOH
361
A
HOH
133
4
HOH
HOH
362
A
HOH
134
4
HOH
HOH
363
A
HOH
135
4
HOH
HOH
364
A
HOH
136
4
HOH
HOH
365
A
HOH
140
4
HOH
HOH
366
A
HOH
141
4
HOH
HOH
367
A
HOH
142
4
HOH
HOH
368
A
HOH
143
4
HOH
HOH
369
A
HOH
144
4
HOH
HOH
370
A
HOH
146
4
HOH
HOH
371
A
HOH
148
4
HOH
HOH
372
A
HOH
149
4
HOH
HOH
373
A
HOH
152
4
HOH
HOH
374
A
HOH
153
4
HOH
HOH
375
A
HOH
154
4
HOH
HOH
376
A
HOH
157
4
HOH
HOH
377
A
HOH
158
4
HOH
HOH
378
A
HOH
159
4
HOH
HOH
379
A
HOH
160
4
HOH
HOH
380
A
HOH
161
4
HOH
HOH
381
A
HOH
165
4
HOH
HOH
382
A
HOH
166
4
HOH
HOH
383
A
HOH
167
4
HOH
HOH
384
A
HOH
168
4
HOH
HOH
385
A
HOH
169
4
HOH
HOH
386
A
HOH
170
4
HOH
HOH
387
A
HOH
173
4
HOH
HOH
388
A
HOH
174
4
HOH
HOH
389
A
HOH
175
4
HOH
HOH
390
A
HOH
176
4
HOH
HOH
391
A
HOH
177
4
HOH
HOH
392
A
HOH
178
4
HOH
HOH
393
A
HOH
179
4
HOH
HOH
394
A
HOH
181
4
HOH
HOH
395
A
HOH
182
4
HOH
HOH
396
A
HOH
184
4
HOH
HOH
397
A
HOH
185
4
HOH
HOH
398
A
HOH
186
4
HOH
HOH
399
A
HOH
189
4
HOH
HOH
400
A
HOH
190
4
HOH
HOH
401
A
HOH
191
4
HOH
HOH
402
A
HOH
193
4
HOH
HOH
403
A
HOH
194
4
HOH
HOH
404
A
HOH
195
4
HOH
HOH
405
A
HOH
196
4
HOH
HOH
406
A
HOH
199
4
HOH
HOH
407
A
HOH
200
4
HOH
HOH
408
A
HOH
201
4
HOH
HOH
409
A
HOH
202
4
HOH
HOH
410
A
HOH
203
4
HOH
HOH
411
A
HOH
206
4
HOH
HOH
412
A
HOH
209
4
HOH
HOH
413
A
HOH
210
4
HOH
HOH
414
A
HOH
211
4
HOH
HOH
415
A
HOH
212
4
HOH
HOH
416
A
HOH
213
4
HOH
HOH
417
A
HOH
214
4
HOH
HOH
418
A
HOH
218
4
HOH
HOH
419
A
HOH
220
4
HOH
HOH
420
A
HOH
222
4
HOH
HOH
421
A
HOH
223
4
HOH
HOH
422
A
HOH
226
4
HOH
HOH
423
A
HOH
227
4
HOH
HOH
424
A
HOH
228
4
HOH
HOH
425
A
HOH
229
4
HOH
HOH
426
A
HOH
230
4
HOH
HOH
427
A
HOH
231
4
HOH
HOH
428
A
HOH
233
4
HOH
HOH
429
A
HOH
236
4
HOH
HOH
430
A
HOH
3
4
HOH
HOH
100
B
HOH
8
4
HOH
HOH
101
B
HOH
10
4
HOH
HOH
102
B
HOH
13
4
HOH
HOH
103
B
HOH
14
4
HOH
HOH
104
B
HOH
15
4
HOH
HOH
105
B
HOH
16
4
HOH
HOH
106
B
HOH
18
4
HOH
HOH
107
B
HOH
19
4
HOH
HOH
108
B
HOH
21
4
HOH
HOH
109
B
HOH
23
4
HOH
HOH
110
B
HOH
25
4
HOH
HOH
111
B
HOH
30
4
HOH
HOH
112
B
HOH
44
4
HOH
HOH
113
B
HOH
46
4
HOH
HOH
114
B
HOH
47
4
HOH
HOH
115
B
HOH
49
4
HOH
HOH
116
B
HOH
50
4
HOH
HOH
117
B
HOH
53
4
HOH
HOH
118
B
HOH
55
4
HOH
HOH
119
B
HOH
57
4
HOH
HOH
120
B
HOH
58
4
HOH
HOH
121
B
HOH
61
4
HOH
HOH
122
B
HOH
62
4
HOH
HOH
123
B
HOH
64
4
HOH
HOH
124
B
HOH
70
4
HOH
HOH
125
B
HOH
75
4
HOH
HOH
126
B
HOH
77
4
HOH
HOH
127
B
HOH
81
4
HOH
HOH
128
B
HOH
88
4
HOH
HOH
129
B
HOH
89
4
HOH
HOH
130
B
HOH
98
4
HOH
HOH
131
B
HOH
99
4
HOH
HOH
132
B
HOH
106
4
HOH
HOH
133
B
HOH
108
4
HOH
HOH
134
B
HOH
110
4
HOH
HOH
135
B
HOH
114
4
HOH
HOH
136
B
HOH
115
4
HOH
HOH
137
B
HOH
119
4
HOH
HOH
138
B
HOH
120
4
HOH
HOH
139
B
HOH
127
4
HOH
HOH
140
B
HOH
129
4
HOH
HOH
141
B
HOH
137
4
HOH
HOH
142
B
HOH
138
4
HOH
HOH
143
B
HOH
139
4
HOH
HOH
144
B
HOH
147
4
HOH
HOH
145
B
HOH
150
4
HOH
HOH
146
B
HOH
151
4
HOH
HOH
147
B
HOH
155
4
HOH
HOH
148
B
HOH
156
4
HOH
HOH
149
B
HOH
162
4
HOH
HOH
150
B
HOH
163
4
HOH
HOH
151
B
HOH
164
4
HOH
HOH
152
B
HOH
171
4
HOH
HOH
153
B
HOH
172
4
HOH
HOH
154
B
HOH
180
4
HOH
HOH
155
B
HOH
183
4
HOH
HOH
156
B
HOH
187
4
HOH
HOH
157
B
HOH
188
4
HOH
HOH
158
B
HOH
192
4
HOH
HOH
159
B
HOH
197
4
HOH
HOH
160
B
HOH
198
4
HOH
HOH
161
B
HOH
204
4
HOH
HOH
162
B
HOH
205
4
HOH
HOH
163
B
HOH
207
4
HOH
HOH
164
B
HOH
208
4
HOH
HOH
165
B
HOH
215
4
HOH
HOH
166
B
HOH
217
4
HOH
HOH
167
B
HOH
219
4
HOH
HOH
168
B
HOH
221
4
HOH
HOH
169
B
HOH
224
4
HOH
HOH
170
B
HOH
225
4
HOH
HOH
171
B
HOH
232
4
HOH
HOH
172
B
HOH
234
4
HOH
HOH
173
B
HOH
235
4
HOH
HOH
174
B
HOH
5
4
HOH
HOH
11
C
HOH
66
4
HOH
HOH
12
C
HOH
107
4
HOH
HOH
13
C
HOH
145
4
HOH
HOH
14
C
HOH
216
4
HOH
HOH
15
C
PRO
2
n
1
PRO
2
A
HIS
3
n
2
HIS
3
A
SER
4
n
3
SER
4
A
MET
5
n
4
MET
5
A
ARG
6
n
5
ARG
6
A
TYR
7
n
6
TYR
7
A
PHE
8
n
7
PHE
8
A
GLU
9
n
8
GLU
9
A
THR
10
n
9
THR
10
A
ALA
11
n
10
ALA
11
A
VAL
12
n
11
VAL
12
A
SER
13
n
12
SER
13
A
ARG
14
n
13
ARG
14
A
PRO
15
n
14
PRO
15
A
GLY
16
n
15
GLY
16
A
LEU
17
n
16
LEU
17
A
GLU
18
n
17
GLU
18
A
GLU
19
n
18
GLU
19
A
PRO
20
n
19
PRO
20
A
ARG
21
n
20
ARG
21
A
TYR
22
n
21
TYR
22
A
ILE
23
n
22
ILE
23
A
SER
24
n
23
SER
24
A
VAL
25
n
24
VAL
25
A
GLY
26
n
25
GLY
26
A
TYR
27
n
26
TYR
27
A
VAL
28
n
27
VAL
28
A
ASP
29
n
28
ASP
29
A
ASN
30
n
29
ASN
30
A
LYS
31
n
30
LYS
31
A
GLU
32
n
31
GLU
32
A
PHE
33
n
32
PHE
33
A
VAL
34
n
33
VAL
34
A
ARG
35
n
34
ARG
35
A
PHE
36
n
35
PHE
36
A
ASP
37
n
36
ASP
37
A
SER
38
n
37
SER
38
A
ASP
39
n
38
ASP
39
A
ALA
40
n
39
ALA
40
A
ALA
41
n
40
GLU
41
A
ASN
42
n
41
ASN
42
A
PRO
43
n
42
PRO
43
A
ARG
44
n
43
ARG
44
A
TYR
45
n
44
TYR
45
A
GLU
46
n
45
GLU
46
A
PRO
47
n
46
PRO
47
A
ARG
48
n
47
ARG
48
A
ALA
49
n
48
ALA
49
A
PRO
50
n
49
PRO
50
A
TRP
51
n
50
TRP
51
A
MET
52
n
51
MET
52
A
GLU
53
n
52
GLU
53
A
GLN
54
n
53
GLN
54
A
GLU
55
n
54
GLU
55
A
GLY
56
n
55
GLY
56
A
PRO
57
n
56
PRO
57
A
GLU
58
n
57
GLU
58
A
TYR
59
n
58
TYR
59
A
TRP
60
n
59
TRP
60
A
GLU
61
n
60
GLU
61
A
ARG
62
n
61
ARG
62
A
GLU
63
n
62
GLU
63
A
THR
64
n
63
THR
64
A
GLN
65
n
64
GLN
65
A
LYS
66
n
65
LYS
66
A
ALA
67
n
66
ALA
67
A
LYS
68
n
67
LYS
68
A
GLY
69
n
68
GLY
69
A
GLN
70
n
69
GLN
70
A
GLU
71
n
70
GLU
71
A
GLN
72
n
71
GLN
72
A
TRP
73
n
72
TRP
73
A
PHE
74
n
73
PHE
74
A
ARG
75
n
74
ARG
75
A
VAL
76
n
75
VAL
76
A
SER
77
n
76
SER
77
A
LEU
78
n
77
LEU
78
A
ARG
79
n
78
ARG
79
A
ASN
80
n
79
ASN
80
A
LEU
81
n
80
LEU
81
A
LEU
82
n
81
LEU
82
A
GLY
83
n
82
GLY
83
A
TYR
84
n
83
TYR
84
A
TYR
85
n
84
TYR
85
A
ASN
86
n
85
ASN
86
A
GLN
87
n
86
GLN
87
A
SER
88
n
87
SER
88
A
ALA
89
n
88
ALA
89
A
GLY
90
n
89
GLY
90
A
GLY
91
n
90
GLY
91
A
SER
92
n
91
SER
92
A
HIS
93
n
92
HIS
93
A
THR
94
n
93
THR
94
A
LEU
95
n
94
LEU
95
A
GLN
96
n
95
GLN
96
A
GLN
97
n
96
GLN
97
A
MET
98
n
97
MET
98
A
SER
99
n
98
SER
99
A
GLY
100
n
99
GLY
100
A
CYS
101
n
100
CYS
101
A
ASP
102
n
101
ASP
102
A
LEU
103
n
102
LEU
103
A
GLY
104
n
103
GLY
104
A
SER
105
n
104
SER
105
A
ASP
106
n
105
ASP
106
A
TRP
107
n
106
TRP
107
A
ARG
108
n
107
ARG
108
A
LEU
109
n
108
LEU
109
A
LEU
110
n
109
LEU
110
A
ARG
111
n
110
ARG
111
A
GLY
112
n
111
GLY
112
A
TYR
113
n
112
TYR
113
A
LEU
114
n
113
LEU
114
A
GLN
115
n
114
GLN
115
A
PHE
116
n
115
PHE
116
A
ALA
117
n
116
ALA
117
A
TYR
118
n
117
TYR
118
A
GLU
119
n
118
GLU
119
A
GLY
120
n
119
GLY
120
A
ARG
121
n
120
ARG
121
A
ASP
122
n
121
ASP
122
A
TYR
123
n
122
TYR
123
A
ILE
124
n
123
ILE
124
A
ALA
125
n
124
ALA
125
A
LEU
126
n
125
LEU
126
A
ASN
127
n
126
ASN
127
A
GLU
128
n
127
GLU
128
A
ASP
129
n
128
ASP
129
A
LEU
130
n
129
LEU
130
A
LYS
131
n
130
LYS
131
A
THR
132
n
131
THR
132
A
TRP
133
n
132
TRP
133
A
THR
134
n
133
THR
134
A
ALA
135
n
134
ALA
135
A
ALA
136
n
135
ALA
136
A
ASP
137
n
136
ASP
137
A
MET
138
n
137
MET
138
A
ALA
139
n
138
ALA
139
A
ALA
140
n
139
ALA
140
A
GLN
141
n
140
GLN
141
A
ILE
142
n
141
ILE
142
A
THR
143
n
142
THR
143
A
ARG
144
n
143
ARG
144
A
ARG
145
n
144
ARG
145
A
LYS
146
n
145
LYS
146
A
TRP
147
n
146
TRP
147
A
GLU
148
n
147
GLU
148
A
GLN
149
n
148
GLN
149
A
SER
150
n
149
SER
150
A
GLY
151
n
150
GLY
151
A
ALA
152
n
151
ALA
152
A
ALA
153
n
152
ALA
153
A
GLU
154
n
153
GLU
154
A
HIS
155
n
154
HIS
155
A
TYR
156
n
155
TYR
156
A
LYS
157
n
156
LYS
157
A
ALA
158
n
157
ALA
158
A
TYR
159
n
158
TYR
159
A
LEU
160
n
159
LEU
160
A
GLU
161
n
160
GLU
161
A
GLY
162
n
161
GLY
162
A
GLU
163
n
162
GLU
163
A
CYS
164
n
163
CYS
164
A
VAL
165
n
164
VAL
165
A
GLU
166
n
165
GLU
166
A
TRP
167
n
166
TRP
167
A
LEU
168
n
167
LEU
168
A
HIS
169
n
168
HIS
169
A
ARG
170
n
169
ARG
170
A
TYR
171
n
170
TYR
171
A
LEU
172
n
171
LEU
172
A
LYS
173
n
172
LYS
173
A
ASN
174
n
173
ASN
174
A
GLY
175
n
174
GLY
175
A
ASN
176
n
175
ASN
176
A
ALA
177
n
176
ALA
177
A
THR
178
n
177
THR
178
A
LEU
179
n
178
LEU
179
A
LEU
180
n
179
LEU
180
A
ARG
181
n
180
ARG
181
A
THR
182
n
181
THR
182
A
ASP
183
n
182
ASP
183
A
SER
184
n
183
SER
184
A
PRO
185
n
184
PRO
185
A
LYS
186
n
185
LYS
186
A
ALA
187
n
186
ALA
187
A
HIS
188
n
187
HIS
188
A
VAL
189
n
188
VAL
189
A
THR
190
n
189
THR
190
A
HIS
191
n
190
HIS
191
A
HIS
192
n
191
HIS
192
A
PRO
193
n
192
PRO
193
A
ARG
194
n
193
ARG
194
A
SER
195
n
194
SER
195
A
LYS
196
n
195
LYS
196
A
GLY
197
n
196
GLY
197
A
GLU
198
n
197
GLU
198
A
VAL
199
n
198
VAL
199
A
THR
200
n
199
THR
200
A
LEU
201
n
200
LEU
201
A
ARG
202
n
201
ARG
202
A
CYS
203
n
202
CYS
203
A
TRP
204
n
203
TRP
204
A
ALA
205
n
204
ALA
205
A
LEU
206
n
205
LEU
206
A
GLY
207
n
206
GLY
207
A
PHE
208
n
207
PHE
208
A
TYR
209
n
208
TYR
209
A
PRO
210
n
209
PRO
210
A
ALA
211
n
210
ALA
211
A
ASP
212
n
211
ASP
212
A
ILE
213
n
212
ILE
213
A
THR
214
n
213
THR
214
A
LEU
215
n
214
LEU
215
A
THR
216
n
215
THR
216
A
TRP
217
n
216
TRP
217
A
GLN
218
n
217
GLN
218
A
LEU
219
n
218
LEU
219
A
ASN
220
n
219
ASN
220
A
GLY
221
n
220
GLY
221
A
GLU
222
n
221
GLU
222
A
GLU
223
n
222
GLU
223
A
LEU
224
n
223
LEU
224
A
THR
225
n
224
THR
225
A
GLN
226
n
225
GLN
226
A
ASP
227
n
226
ASP
227
A
MET
228
n
227
MET
228
A
GLU
229
n
228
GLU
229
A
LEU
230
n
229
LEU
230
A
VAL
231
n
230
VAL
231
A
GLU
232
n
231
GLU
232
A
THR
233
n
232
THR
233
A
ARG
234
n
233
ARG
234
A
PRO
235
n
234
PRO
235
A
ALA
236
n
235
ALA
236
A
GLY
237
n
236
GLY
237
A
ASP
238
n
237
ASP
238
A
GLY
239
n
238
GLY
239
A
THR
240
n
239
THR
240
A
PHE
241
n
240
PHE
241
A
GLN
242
n
241
GLN
242
A
LYS
243
n
242
LYS
243
A
TRP
244
n
243
TRP
244
A
ALA
245
n
244
ALA
245
A
SER
246
n
245
SER
246
A
VAL
247
n
246
VAL
247
A
VAL
248
n
247
VAL
248
A
VAL
249
n
248
VAL
249
A
PRO
250
n
249
PRO
250
A
LEU
251
n
250
LEU
251
A
GLY
252
n
251
GLY
252
A
LYS
253
n
252
LYS
253
A
GLU
254
n
253
GLU
254
A
GLN
255
n
254
GLN
255
A
ASN
256
n
255
ASN
256
A
TYR
257
n
256
TYR
257
A
THR
258
n
257
THR
258
A
CYS
259
n
258
CYS
259
A
ARG
260
n
259
ARG
260
A
VAL
261
n
260
VAL
261
A
TYR
262
n
261
TYR
262
A
HIS
263
n
262
HIS
263
A
GLU
264
n
263
GLU
264
A
GLY
265
n
264
GLY
265
A
LEU
266
n
265
LEU
266
A
PRO
267
n
266
PRO
267
A
GLU
268
n
267
GLU
268
A
PRO
269
n
268
PRO
269
A
LEU
270
n
269
LEU
270
A
THR
271
n
270
THR
271
A
LEU
272
n
271
LEU
272
A
ARG
273
n
272
ARG
273
A
TRP
274
n
273
TRP
274
A
ALA
0
n
1
MET
0
B
ILE
1
n
2
ILE
1
B
GLN
2
n
3
GLN
2
B
LYS
3
n
4
LYS
3
B
THR
4
n
5
THR
4
B
PRO
5
n
6
PRO
5
B
GLN
6
n
7
GLN
6
B
ILE
7
n
8
ILE
7
B
GLN
8
n
9
GLN
8
B
VAL
9
n
10
VAL
9
B
TYR
10
n
11
TYR
10
B
SER
11
n
12
SER
11
B
ARG
12
n
13
ARG
12
B
HIS
13
n
14
HIS
13
B
PRO
14
n
15
PRO
14
B
PRO
15
n
16
PRO
15
B
GLU
16
n
17
GLU
16
B
ASN
17
n
18
ASN
17
B
GLY
18
n
19
GLY
18
B
LYS
19
n
20
LYS
19
B
PRO
20
n
21
PRO
20
B
ASN
21
n
22
ASN
21
B
ILE
22
n
23
ILE
22
B
LEU
23
n
24
LEU
23
B
ASN
24
n
25
ASN
24
B
CYS
25
n
26
CYS
25
B
TYR
26
n
27
TYR
26
B
VAL
27
n
28
VAL
27
B
THR
28
n
29
THR
28
B
GLN
29
n
30
GLN
29
B
PHE
30
n
31
PHE
30
B
HIS
31
n
32
HIS
31
B
PRO
32
n
33
PRO
32
B
PRO
33
n
34
PRO
33
B
HIS
34
n
35
HIS
34
B
ILE
35
n
36
ILE
35
B
GLU
36
n
37
GLU
36
B
ILE
37
n
38
ILE
37
B
GLN
38
n
39
GLN
38
B
MET
39
n
40
MET
39
B
LEU
40
n
41
LEU
40
B
LYS
41
n
42
LYS
41
B
ASN
42
n
43
ASN
42
B
GLY
43
n
44
GLY
43
B
LYS
44
n
45
LYS
44
B
LYS
45
n
46
LYS
45
B
ILE
46
n
47
ILE
46
B
PRO
47
n
48
PRO
47
B
LYS
48
n
49
LYS
48
B
VAL
49
n
50
VAL
49
B
GLU
50
n
51
GLU
50
B
MET
51
n
52
MET
51
B
SER
52
n
53
SER
52
B
ASP
53
n
54
ASP
53
B
MET
54
n
55
MET
54
B
SER
55
n
56
SER
55
B
PHE
56
n
57
PHE
56
B
SER
57
n
58
SER
57
B
LYS
58
n
59
LYS
58
B
ASP
59
n
60
ASP
59
B
TRP
60
n
61
TRP
60
B
SER
61
n
62
SER
61
B
PHE
62
n
63
PHE
62
B
TYR
63
n
64
TYR
63
B
ILE
64
n
65
ILE
64
B
LEU
65
n
66
LEU
65
B
ALA
66
n
67
ALA
66
B
HIS
67
n
68
HIS
67
B
THR
68
n
69
THR
68
B
GLU
69
n
70
GLU
69
B
PHE
70
n
71
PHE
70
B
THR
71
n
72
THR
71
B
PRO
72
n
73
PRO
72
B
THR
73
n
74
THR
73
B
GLU
74
n
75
GLU
74
B
THR
75
n
76
THR
75
B
ASP
76
n
77
ASP
76
B
THR
77
n
78
THR
77
B
TYR
78
n
79
TYR
78
B
ALA
79
n
80
ALA
79
B
CYS
80
n
81
CYS
80
B
ARG
81
n
82
ARG
81
B
VAL
82
n
83
VAL
82
B
LYS
83
n
84
LYS
83
B
HIS
84
n
85
HIS
84
B
ALA
85
n
86
ASP
85
B
SER
86
n
87
SER
86
B
MET
87
n
88
MET
87
B
ALA
88
n
89
ALA
88
B
GLU
89
n
90
GLU
89
B
PRO
90
n
91
PRO
90
B
LYS
91
n
92
LYS
91
B
THR
92
n
93
THR
92
B
VAL
93
n
94
VAL
93
B
TYR
94
n
95
TYR
94
B
TRP
95
n
96
TRP
95
B
ASP
96
n
97
ASP
96
B
ARG
97
n
98
ARG
97
B
ASP
98
n
99
ASP
98
B
MET
99
n
100
MET
99
B
SER
1
n
1
SER
1
C
SER
2
n
2
SER
2
C
LEU
3
n
3
LEU
3
C
GLU
4
n
4
GLU
4
C
ASN
5
n
5
ASN
5
C
PHE
6
n
6
PHE
6
C
ALA
7
n
7
ALA
7
C
ALA
8
n
8
ALA
8
C
TYR
9
n
9
TYR
9
C
VAL
10
n
10
VAL
10
C
author_and_software_defined_assembly
PISA
3
trimeric
4300
-18
18880
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
GLU
46
A
O
GLU
45
A
N
ARG
35
A
N
ARG
34
A
O
PHE
36
A
O
PHE
35
A
N
SER
24
A
N
SER
23
A
O
TYR
27
A
O
TYR
26
A
N
ARG
6
A
N
ARG
5
A
N
GLU
9
A
N
GLU
8
A
O
GLN
97
A
O
GLN
96
A
N
ASP
102
A
N
ASP
101
A
O
LEU
110
A
O
LEU
109
A
N
LEU
114
A
N
LEU
113
A
O
LEU
126
A
O
LEU
125
A
N
ALA
125
A
N
ALA
124
A
O
THR
134
A
O
THR
133
A
N
HIS
192
A
N
HIS
191
A
O
THR
200
A
O
THR
199
A
N
CYS
203
A
N
CYS
202
A
O
ALA
245
A
O
ALA
244
A
O
SER
246
A
O
SER
245
A
N
GLU
229
A
N
GLU
228
A
N
HIS
192
A
N
HIS
191
A
O
THR
200
A
O
THR
199
A
N
CYS
203
A
N
CYS
202
A
O
ALA
245
A
O
ALA
244
A
O
GLN
242
A
O
GLN
241
A
N
ARG
234
A
N
ARG
233
A
O
GLU
222
A
O
GLU
221
A
N
LEU
219
A
N
LEU
218
A
N
THR
214
A
N
THR
213
A
O
TYR
262
A
O
TYR
261
A
N
CYS
259
A
N
CYS
258
A
O
LEU
272
A
O
LEU
271
B
N
TYR
10
B
N
TYR
11
B
O
ASN
24
B
O
ASN
25
B
N
CYS
25
B
N
CYS
26
B
O
ALA
66
B
O
ALA
67
B
O
HIS
67
B
O
HIS
68
B
N
GLU
50
B
N
GLU
51
B
N
TYR
10
B
N
TYR
11
B
O
ASN
24
B
O
ASN
25
B
N
CYS
25
B
N
CYS
26
B
O
ALA
66
B
O
ALA
67
B
O
TYR
63
B
O
TYR
64
B
N
SER
55
B
N
SER
56
B
O
LYS
44
B
O
LYS
45
B
N
LYS
41
B
N
LYS
42
B
N
LEU
40
B
N
LEU
41
B
O
ALA
79
B
O
ALA
80
B
N
VAL
82
B
N
VAL
83
B
O
LYS
91
B
O
LYS
92
1
A
HOH
309
D
HOH
1
A
HOH
357
D
HOH
1
A
CG
GLU
41
A
CG
GLU
40
1
Y
1
A
CD
GLU
41
A
CD
GLU
40
1
Y
1
A
OE1
GLU
41
A
OE1
GLU
40
1
Y
1
A
OE2
GLU
41
A
OE2
GLU
40
1
Y
1
B
CG
MET
0
B
CG
MET
1
1
Y
1
B
SD
MET
0
B
SD
MET
1
1
Y
1
B
CE
MET
0
B
CE
MET
1
1
Y
1
B
CG
ASP
85
B
CG
ASP
86
1
Y
1
B
OD1
ASP
85
B
OD1
ASP
86
1
Y
1
B
OD2
ASP
85
B
OD2
ASP
86
1
Y
1
A
TRP
51
-55.68
-1.24
1
A
TRP
107
-44.44
8.27
1
A
LEU
114
-160.28
107.36
1
A
TYR
123
-110.89
-71.11
1
A
LYS
131
-132.00
-38.90
1
A
ARG
194
-137.10
-69.34
1
A
LYS
253
-143.33
13.87
1
B
TRP
60
84.67
-18.42
0.2645
0.2174
2.2
50
929
22053
21124
random
1
2
MOLECULAR REPLACEMENT
Engh & Huber
2.2
50
236
3378
0
0
3142
0.006079
1.32223
20.75685
24.77357
2.2
100
1YN7
23606
22053
2
2
0.107
1
5.6
93.4
2.2
2.28
92.1
data collection
HKL-2000
data scaling
SCALEPACK
phasing
AMoRE
refinement
CNS
1.0
data reduction
HKL-2000
Crystal structure of a mouse MHC class I protein, H2-Db, in complex with a mutated peptide (R7A) of the influenza A acid polymerase
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
4
N
N
A
ALA
49
A
ALA
48
HELX_P
A
GLU
53
A
GLU
52
5
1
5
A
GLY
56
A
GLY
55
HELX_P
A
TYR
85
A
TYR
84
1
2
30
A
ASP
137
A
ASP
136
HELX_P
A
GLY
151
A
GLY
150
1
3
15
A
GLY
151
A
GLY
150
HELX_P
A
GLY
162
A
GLY
161
1
4
12
A
GLY
162
A
GLY
161
HELX_P
A
GLY
175
A
GLY
174
1
5
14
A
GLY
175
A
GLY
174
HELX_P
A
LEU
180
A
LEU
179
1
6
6
A
LYS
253
A
LYS
252
HELX_P
A
GLN
255
A
GLN
254
5
7
3
disulf
2.034
A
CYS
101
A
SG
CYS
100
1_555
A
CYS
164
A
SG
CYS
163
1_555
disulf
2.028
A
CYS
203
A
SG
CYS
202
1_555
A
CYS
259
A
SG
CYS
258
1_555
disulf
2.038
B
CYS
25
B
SG
CYS
26
1_555
B
CYS
80
B
SG
CYS
81
1_555
IMMUNE SYSTEM
MHC class 1, H2-Db, influenza A, peptide of acid polymerase, IMMUNE SYSTEM
A
TYR
209
A
TYR
208
1
A
PRO
210
A
PRO
209
-0.32
B
HIS
31
B
HIS
32
1
B
PRO
32
B
PRO
33
0.59
HA11_MOUSE
UNP
1
26
P01899
PHSMRYFETAVSRPGLEEPRYISVGYVDNKEFVRFDSDAENPRYEPRAPWMEQEGPEYWERETQKAKGQEQWFRVSLRNL
LGYYNQSAGGSHTLQQMSGCDLGSDWRLLRGYLQFAYEGRDYIALNEDLKTWTAADMAAQITRRKWEQSGAAEHYKAYLE
GECVEWLHRYLKNGNATLLRTDSPKAHVTHHPRSKGEVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTF
QKWASVVVPLGKEQNYTCRVYHEGLPEPLTLRW
B2MG_MOUSE
UNP
2
21
P01887
IQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYAC
RVKHDSMAEPKTVYWDRDM
RRP2_IAZI1
UNP
3
224
P13175
SSLENFRAYV
26
298
1YN7
2
274
P01899
A
1
1
273
21
119
1YN7
1
99
P01887
B
2
2
100
224
233
1YN7
1
10
P13175
C
3
1
10
2
initiating methionine
MET
0
1YN7
B
P01887
UNP
1
3
ARG
engineered mutation
ALA
7
1YN7
C
P13175
UNP
230
7
8
4
4
4
4
4
4
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
GLU
46
A
GLU
45
A
PRO
47
A
PRO
46
A
LYS
31
A
LYS
30
A
ASP
37
A
ASP
36
A
ARG
21
A
ARG
20
A
VAL
28
A
VAL
27
A
SER
4
A
SER
3
A
VAL
12
A
VAL
11
A
THR
94
A
THR
93
A
LEU
103
A
LEU
102
A
LEU
109
A
LEU
108
A
TYR
118
A
TYR
117
A
ARG
121
A
ARG
120
A
LEU
126
A
LEU
125
A
TRP
133
A
TRP
132
A
ALA
135
A
ALA
134
A
LYS
186
A
LYS
185
A
SER
195
A
SER
194
A
GLU
198
A
GLU
197
A
PHE
208
A
PHE
207
A
PHE
241
A
PHE
240
A
PRO
250
A
PRO
249
A
GLU
229
A
GLU
228
A
LEU
230
A
LEU
229
A
LYS
186
A
LYS
185
A
SER
195
A
SER
194
A
GLU
198
A
GLU
197
A
PHE
208
A
PHE
207
A
PHE
241
A
PHE
240
A
PRO
250
A
PRO
249
A
ARG
234
A
ARG
233
A
PRO
235
A
PRO
234
A
GLU
222
A
GLU
221
A
GLU
223
A
GLU
222
A
THR
214
A
THR
213
A
LEU
219
A
LEU
218
A
TYR
257
A
TYR
256
A
TYR
262
A
TYR
261
A
LEU
270
A
LEU
269
A
LEU
272
A
LEU
271
B
GLN
6
B
GLN
7
B
SER
11
B
SER
12
B
ASN
21
B
ASN
22
B
PHE
30
B
PHE
31
B
PHE
62
B
PHE
63
B
PHE
70
B
PHE
71
B
GLU
50
B
GLU
51
B
MET
51
B
MET
52
B
GLN
6
B
GLN
7
B
SER
11
B
SER
12
B
ASN
21
B
ASN
22
B
PHE
30
B
PHE
31
B
PHE
62
B
PHE
63
B
PHE
70
B
PHE
71
B
SER
55
B
SER
56
B
PHE
56
B
PHE
57
B
LYS
44
B
LYS
45
B
LYS
45
B
LYS
46
B
GLU
36
B
GLU
37
B
LYS
41
B
LYS
42
B
TYR
78
B
TYR
79
B
LYS
83
B
LYS
84
B
LYS
91
B
LYS
92
B
TYR
94
B
TYR
95
96
P 43 21 2