0.008123
0.000000
0.003006
0.000000
0.017529
0.000000
0.000000
0.000000
0.014520
0.00000
0.00000
0.00000
Shaffer, P.L.
Gewirth, D.T.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
110.31
90.00
123.104
57.049
73.438
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
O
N
89
N
P
N
90
N
O
N
91
N
O
N
92
N
O
N
93
N
C
N
94
R
C
N
95
N
O
N
96
S
C
N
97
N
O
N
98
N
C
N
99
R
C
Y
100
N
N
Y
101
N
C
Y
102
N
N
Y
103
N
C
Y
104
N
C
N
105
N
N
Y
106
N
N
Y
107
N
C
Y
108
N
N
Y
109
N
C
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
O
N
125
N
P
N
126
N
O
N
127
N
O
N
128
N
O
N
129
N
C
N
130
R
C
N
131
N
O
N
132
S
C
N
133
N
O
N
134
N
C
N
135
R
C
N
136
N
N
N
137
N
C
N
138
N
O
N
139
N
N
N
140
N
C
N
141
N
N
N
142
N
C
N
143
N
C
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
P
N
160
N
O
N
161
N
O
N
162
N
O
N
163
N
C
N
164
R
C
N
165
N
O
N
166
S
C
N
167
N
O
N
168
N
C
N
169
R
C
Y
170
N
N
Y
171
N
C
Y
172
N
N
Y
173
N
C
N
174
N
C
N
175
N
O
N
176
N
N
N
177
N
C
N
178
N
N
N
179
N
N
Y
180
N
C
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
O
N
196
N
P
N
197
N
O
N
198
N
O
N
199
N
O
N
200
N
C
N
201
R
C
N
202
N
O
N
203
S
C
N
204
N
O
N
205
N
C
N
206
R
C
N
207
N
N
N
208
N
C
N
209
N
O
N
210
N
N
N
211
N
C
N
212
N
O
N
213
N
C
N
214
N
C
N
215
N
C
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
N
N
232
S
C
N
233
N
C
N
234
N
O
N
235
N
C
N
236
N
C
N
237
N
C
N
238
N
O
N
239
N
N
N
240
N
O
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
N
N
252
S
C
N
253
N
C
N
254
N
O
N
255
N
C
N
256
N
C
N
257
N
C
N
258
N
O
N
259
N
O
N
260
N
O
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
N
N
271
N
C
N
272
N
C
N
273
N
O
N
274
N
O
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
N
N
281
S
C
N
282
N
C
N
283
N
O
N
284
N
C
Y
285
N
C
Y
286
N
N
Y
287
N
C
Y
288
N
C
Y
289
N
N
N
290
N
O
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
N
N
302
S
C
N
303
N
C
N
304
N
O
N
305
S
C
N
306
N
C
N
307
N
C
N
308
N
C
N
309
N
O
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
N
N
324
S
C
N
325
N
C
N
326
N
O
N
327
N
C
N
328
N
C
N
329
N
C
N
330
N
C
N
331
N
O
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
N
N
346
S
C
N
347
N
C
N
348
N
O
N
349
N
C
N
350
N
C
N
351
N
C
N
352
N
C
N
353
N
N
N
354
N
O
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
N
N
371
S
C
N
372
N
C
N
373
N
O
N
374
N
C
N
375
N
C
N
376
N
S
N
377
N
C
N
378
N
O
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
N
N
391
S
C
N
392
N
C
N
393
N
O
N
394
N
C
Y
395
N
C
Y
396
N
C
Y
397
N
C
Y
398
N
C
Y
399
N
C
Y
400
N
C
N
401
N
O
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
N
N
414
S
C
N
415
N
C
N
416
N
O
N
417
N
C
N
418
N
C
N
419
N
C
N
420
N
O
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
N
N
431
S
C
N
432
N
C
N
433
N
O
N
434
N
C
N
435
N
O
N
436
N
O
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
N
N
445
S
C
N
446
N
C
N
447
N
O
N
448
R
C
N
449
N
O
N
450
N
C
N
451
N
O
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
N
N
462
S
C
N
463
N
C
N
464
N
O
N
465
N
C
Y
466
N
C
Y
467
N
C
Y
468
N
C
Y
469
N
C
Y
470
N
C
Y
471
N
C
N
472
N
O
N
473
N
O
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
N
N
486
S
C
N
487
N
C
N
488
N
O
N
489
N
C
N
490
N
C
N
491
N
C
N
492
N
O
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
H
N
498
N
H
N
499
N
H
N
500
N
H
N
501
N
H
N
502
N
H
N
503
N
H
N
504
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
Y
106
N
sing
Y
107
N
sing
Y
108
N
doub
N
109
N
sing
Y
110
N
sing
Y
111
N
sing
Y
112
N
doub
N
113
N
sing
Y
114
N
doub
N
115
N
sing
N
116
N
sing
Y
117
N
sing
Y
118
N
doub
N
119
N
sing
Y
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
Y
179
N
sing
Y
180
N
sing
Y
181
N
doub
N
182
N
sing
Y
183
N
sing
N
184
N
sing
Y
185
N
doub
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
doub
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
doub
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
doub
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
doub
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
doub
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
doub
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
doub
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
Y
289
N
sing
Y
290
N
doub
Y
291
N
doub
N
292
N
sing
Y
293
N
sing
N
294
N
sing
Y
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
doub
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
doub
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
doub
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
doub
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
doub
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
Y
395
N
doub
Y
396
N
sing
Y
397
N
sing
N
398
N
sing
Y
399
N
doub
N
400
N
sing
Y
401
N
doub
N
402
N
sing
Y
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
doub
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
doub
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
doub
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
doub
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
Y
464
N
doub
Y
465
N
sing
Y
466
N
sing
N
467
N
sing
Y
468
N
doub
N
469
N
sing
Y
470
N
doub
N
471
N
sing
Y
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
doub
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
UK
J.Steroid Biochem.Mol.Biol.
JSBBEZ
2046
0960-0760
89-90
215
219
10.1016/j.jsbmb.2004.03.084
15225774
Structural analysis of RXR-VDR interactions on DR3 DNA
2004
10.2210/pdb1ynw/pdb
pdb_00001ynw
100
1
CCD
2002-03-15
MARRESEARCH
SINGLE WAVELENGTH
M
x-ray
1
1.1808
1.0
14-ID-B
APS
1.1808
SYNCHROTRON
APS BEAMLINE 14-ID-B
DR3 Response Element
5564.629
5'-d(*TP*TP*AP*GP*GP*TP*CP*AP*CP*GP*AP*AP*GP*GP*TP*CP*AP*A)-3'
1
syn
polymer
DR3 Response Element
5457.539
5'-d(*TP*TP*TP*GP*AP*CP*CP*TP*TP*CP*GP*TP*GP*AP*CP*CP*TP*A)-3'
1
syn
polymer
12784.103
Vitamin D3 Receptor
DNA-binding Domain (Residues 16-125)
P61A,F62A,H75A
1
man
polymer
11642.225
Retinoic acid receptor RXR-alpha
DNA-binding Domain (Residues 130-228)
1
man
polymer
65.409
ZINC ION
4
syn
non-polymer
VDR; 1,25-dihydroxyvitamin D3 receptor
9-cis Retinoic Acid Receptor; Retinoid X receptor alpha
no
no
(DT)(DT)(DA)(DG)(DG)(DT)(DC)(DA)(DC)(DG)(DA)(DA)(DG)(DG)(DT)(DC)(DA)(DA)
TTAGGTCACGAAGGTCAA
C
polydeoxyribonucleotide
no
no
(DT)(DT)(DT)(DG)(DA)(DC)(DC)(DT)(DT)(DC)(DG)(DT)(DG)(DA)(DC)(DC)(DT)(DA)
TTTGACCTTCGTGACCTA
D
polydeoxyribonucleotide
no
no
FDRNVPRICGVCGDRATGFHFNAMTCEGCKGFFRRSMKRKALFTCAANGDCRITKDNRRACQACRLKRCVDIGMMKEFIL
TDEEVQRKREMILKRKEEEALKDSLRPKLS
FDRNVPRICGVCGDRATGFHFNAMTCEGCKGFFRRSMKRKALFTCAANGDCRITKDNRRACQACRLKRCVDIGMMKEFIL
TDEEVQRKREMILKRKEEEALKDSLRPKLS
A
polypeptide(L)
no
no
FTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER
QRGKDRNENEVESTSSANE
FTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER
QRGKDRNENEVESTSSANE
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
Escherichia coli
sample
VDR, NR1I1
9606
Homo sapiens
469008
Escherichia coli BL21(DE3)
BL21(DE3)
plasmid
pET11a-VDR(RPKLS)
human
Homo
Escherichia
Escherichia coli
sample
RXRA, NR2B1
9606
Homo sapiens
469008
Escherichia coli BL21(DE3)
BL21(DE3)
plasmid
pGEX-RXR(SANE)
1
4.2
70.3
VAPOR DIFFUSION, HANGING DROP
8.5
PEG 8000, ammonium citrate, Tris, glycerol, DTT, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
291
PEG 8000
1
ammonium citrate
1
Tris
1
glycerol
1
DTT
1
PEG 8000
2
ammonium citrate
2
glycerol
2
-17.903
1
20
C
402
D
436
6.012
C_DT402:DA436_D
1
4.139
-0.305
0.959
-0.546
-19.251
1
20
C
403
D
435
-0.460
C_DA403:DT435_D
2
0.970
-0.011
0.488
-0.177
-10.497
1
19
C
404
D
434
-3.922
C_DG404:DC434_D
3
-3.536
0.107
-0.040
-0.165
-6.972
1
19
C
405
D
433
1.980
C_DG405:DC433_D
4
2.124
-0.384
-0.370
-0.199
-0.503
1
20
C
406
D
432
11.422
C_DT406:DA432_D
5
-13.247
0.696
-0.192
-0.150
12.926
1
19
C
407
D
431
1.011
C_DC407:DG431_D
6
-3.372
0.669
-0.747
-0.522
16.424
1
20
C
408
D
430
-1.793
C_DA408:DT430_D
7
-8.830
0.472
0.328
-0.256
10.826
1
19
C
409
D
429
-1.950
C_DC409:DG429_D
8
-8.955
0.415
-0.067
-0.321
-3.498
1
19
C
410
D
428
-0.145
C_DG410:DC428_D
9
-2.910
-0.673
-0.110
-0.485
5.061
1
20
C
411
D
427
-1.394
C_DA411:DT427_D
10
-5.374
0.739
-0.320
-0.231
-0.853
1
20
C
412
D
426
-1.938
C_DA412:DT426_D
11
-2.413
0.202
0.042
-0.338
-7.929
1
19
C
413
D
425
-0.201
C_DG413:DC425_D
12
-11.745
-0.600
-0.329
-0.542
-17.689
1
19
C
414
D
424
-0.860
C_DG414:DC424_D
13
-6.239
-1.146
-0.524
-0.725
-12.194
1
20
C
415
D
423
-2.868
C_DT415:DA423_D
14
-4.435
-0.159
-0.131
-0.177
0.363
1
19
C
416
D
422
-1.055
C_DC416:DG422_D
15
1.112
-0.638
-0.188
-0.372
0.799
1
20
C
417
D
421
7.485
C_DA417:DT421_D
16
-20.043
-0.284
0.037
-0.483
8.556
1
20
C
418
D
420
0.075
C_DA418:DT420_D
17
-6.034
0.505
0.614
-0.131
3.296
39.227
C
C
402
403
0.423
D
D
436
435
3.250
0.284
-1.636
-0.183
CC_DT402DA403:DT435DA436_DD
1
-1.225
1.825
39.208
-0.306
2.291
3.340
34.007
C
C
403
404
5.790
D
D
435
434
3.373
3.377
-0.137
0.045
CC_DA403DG404:DC434DT435_DD
2
2.806
-4.810
33.731
-0.478
0.697
3.292
30.091
C
C
404
405
-0.861
D
D
434
433
3.263
-0.447
-0.402
-0.759
CC_DG404DG405:DC433DC434_DD
3
-1.778
3.426
30.037
-1.370
0.410
3.109
36.143
C
C
405
406
3.506
D
D
433
432
3.131
2.173
0.239
-0.427
CC_DG405DT406:DA432DC433_DD
4
1.857
-2.996
36.033
-0.981
-0.135
3.224
32.953
C
C
406
407
3.264
D
D
432
431
2.956
1.820
1.093
1.469
CC_DT406DC407:DG431DA432_DD
5
10.493
-18.818
31.230
2.289
-0.191
3.590
36.194
C
C
407
408
7.806
D
D
431
430
3.386
4.823
-0.354
1.672
CC_DC407DA408:DT430DG431_DD
6
-4.790
7.754
35.571
1.961
-0.156
3.241
33.992
C
C
408
409
5.787
D
D
430
429
3.357
3.368
0.340
-1.201
CC_DA408DC409:DG429DT430_DD
7
4.514
-7.756
33.535
-2.602
0.151
3.767
35.962
C
C
409
410
13.413
D
D
429
428
3.703
8.189
0.713
0.430
CC_DC409DG410:DC428DG429_DD
8
4.858
-7.958
34.719
-0.661
-0.350
3.261
34.457
C
C
410
411
11.124
D
D
428
427
3.260
6.547
-0.424
0.496
CC_DG410DA411:DT427DC428_DD
9
2.255
-3.831
33.775
-0.189
1.069
3.005
37.624
C
C
411
412
12.885
D
D
427
426
3.127
8.124
-0.681
-0.539
CC_DA411DA412:DT426DT427_DD
10
-11.398
18.078
35.012
-1.864
-0.387
3.635
31.256
C
C
412
413
-1.460
D
D
426
425
3.613
-0.786
0.151
-1.290
CC_DA412DG413:DC425DT426_DD
11
-1.277
2.371
31.221
-2.230
-0.548
3.747
26.524
C
C
413
414
1.703
D
D
425
424
3.794
0.780
0.050
-1.052
CC_DG413DG414:DC424DC425_DD
12
2.776
-6.063
26.369
-2.531
0.739
3.341
41.710
C
C
414
415
3.604
D
D
424
423
3.341
2.564
-0.772
-0.372
CC_DG414DT415:DA423DC424_DD
13
-1.665
2.340
41.602
-0.798
0.905
3.309
31.820
C
C
415
416
4.466
D
D
423
422
3.180
2.444
1.000
0.995
CC_DT415DC416:DG422DA423_DD
14
2.322
-4.243
31.645
1.371
-1.401
3.632
36.928
C
C
416
417
4.244
D
D
422
421
3.483
2.684
-0.743
1.683
CC_DC416DA417:DT421DG422_DD
15
-2.381
3.765
36.759
2.262
0.823
2.830
37.711
C
C
417
418
-10.163
D
D
421
420
2.879
-6.534
0.337
-0.122
CC_DA417DA418:DT420DT421_DD
16
-2.552
3.970
37.076
0.556
-0.813
database_2
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Version format compliance
Structure summary
Database references
Derived calculations
Data collection
Refinement description
1
0
2005-02-15
1
1
2008-04-30
1
2
2011-07-13
1
3
2011-10-26
1
4
2021-10-20
1
5
2023-08-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
N
RCSB
Y
RCSB
2005-01-25
REL
REL
ZN
ZINC ION
1KB4
PDB ENTRY 1KB4 and 1DSZ
PDB
experimental model
1DSZ
PDB ENTRY 1KB4 and 1DSZ
PDB
experimental model
ZN
150
5
ZN
ZN
150
A
ZN
151
5
ZN
ZN
151
A
ZN
350
5
ZN
ZN
350
B
ZN
351
5
ZN
ZN
351
B
T
401
n
1
DT
401
C
T
402
n
2
DT
402
C
A
403
n
3
DA
403
C
G
404
n
4
DG
404
C
G
405
n
5
DG
405
C
T
406
n
6
DT
406
C
C
407
n
7
DC
407
C
A
408
n
8
DA
408
C
C
409
n
9
DC
409
C
G
410
n
10
DG
410
C
A
411
n
11
DA
411
C
A
412
n
12
DA
412
C
G
413
n
13
DG
413
C
G
414
n
14
DG
414
C
T
415
n
15
DT
415
C
C
416
n
16
DC
416
C
A
417
n
17
DA
417
C
A
418
n
18
DA
418
C
T
419
n
1
DT
419
D
T
420
n
2
DT
420
D
T
421
n
3
DT
421
D
G
422
n
4
DG
422
D
A
423
n
5
DA
423
D
C
424
n
6
DC
424
D
C
425
n
7
DC
425
D
T
426
n
8
DT
426
D
T
427
n
9
DT
427
D
C
428
n
10
DC
428
D
G
429
n
11
DG
429
D
T
430
n
12
DT
430
D
G
431
n
13
DG
431
D
A
432
n
14
DA
432
D
C
433
n
15
DC
433
D
C
434
n
16
DC
434
D
T
435
n
17
DT
435
D
A
436
n
18
DA
436
D
n
1
16
A
n
2
17
A
ARG
18
n
3
ARG
18
A
ASN
19
n
4
ASN
19
A
VAL
20
n
5
VAL
20
A
PRO
21
n
6
PRO
21
A
ARG
22
n
7
ARG
22
A
ILE
23
n
8
ILE
23
A
CYS
24
n
9
CYS
24
A
GLY
25
n
10
GLY
25
A
VAL
26
n
11
VAL
26
A
CYS
27
n
12
CYS
27
A
GLY
28
n
13
GLY
28
A
ASP
29
n
14
ASP
29
A
ARG
30
n
15
ARG
30
A
ALA
31
n
16
ALA
31
A
THR
32
n
17
THR
32
A
GLY
33
n
18
GLY
33
A
PHE
34
n
19
PHE
34
A
HIS
35
n
20
HIS
35
A
PHE
36
n
21
PHE
36
A
ASN
37
n
22
ASN
37
A
ALA
38
n
23
ALA
38
A
MET
39
n
24
MET
39
A
THR
40
n
25
THR
40
A
CYS
41
n
26
CYS
41
A
GLU
42
n
27
GLU
42
A
GLY
43
n
28
GLY
43
A
CYS
44
n
29
CYS
44
A
LYS
45
n
30
LYS
45
A
GLY
46
n
31
GLY
46
A
PHE
47
n
32
PHE
47
A
PHE
48
n
33
PHE
48
A
ARG
49
n
34
ARG
49
A
ARG
50
n
35
ARG
50
A
SER
51
n
36
SER
51
A
MET
52
n
37
MET
52
A
LYS
53
n
38
LYS
53
A
ARG
54
n
39
ARG
54
A
LYS
55
n
40
LYS
55
A
ALA
56
n
41
ALA
56
A
LEU
57
n
42
LEU
57
A
PHE
58
n
43
PHE
58
A
THR
59
n
44
THR
59
A
CYS
60
n
45
CYS
60
A
ALA
61
n
46
ALA
61
A
ALA
62
n
47
ALA
62
A
ASN
63
n
48
ASN
63
A
GLY
64
n
49
GLY
64
A
ASP
65
n
50
ASP
65
A
CYS
66
n
51
CYS
66
A
ARG
67
n
52
ARG
67
A
ILE
68
n
53
ILE
68
A
THR
69
n
54
THR
69
A
LYS
70
n
55
LYS
70
A
ASP
71
n
56
ASP
71
A
ASN
72
n
57
ASN
72
A
ARG
73
n
58
ARG
73
A
ARG
74
n
59
ARG
74
A
ALA
75
n
60
ALA
75
A
CYS
76
n
61
CYS
76
A
GLN
77
n
62
GLN
77
A
ALA
78
n
63
ALA
78
A
CYS
79
n
64
CYS
79
A
ARG
80
n
65
ARG
80
A
LEU
81
n
66
LEU
81
A
LYS
82
n
67
LYS
82
A
ARG
83
n
68
ARG
83
A
CYS
84
n
69
CYS
84
A
VAL
85
n
70
VAL
85
A
ASP
86
n
71
ASP
86
A
ILE
87
n
72
ILE
87
A
GLY
88
n
73
GLY
88
A
MET
89
n
74
MET
89
A
MET
90
n
75
MET
90
A
LYS
91
n
76
LYS
91
A
GLU
92
n
77
GLU
92
A
PHE
93
n
78
PHE
93
A
ILE
94
n
79
ILE
94
A
LEU
95
n
80
LEU
95
A
THR
96
n
81
THR
96
A
ASP
97
n
82
ASP
97
A
GLU
98
n
83
GLU
98
A
GLU
99
n
84
GLU
99
A
VAL
100
n
85
VAL
100
A
GLN
101
n
86
GLN
101
A
ARG
102
n
87
ARG
102
A
LYS
103
n
88
LYS
103
A
ARG
104
n
89
ARG
104
A
GLU
105
n
90
GLU
105
A
MET
106
n
91
MET
106
A
ILE
107
n
92
ILE
107
A
LEU
108
n
93
LEU
108
A
LYS
109
n
94
LYS
109
A
ARG
110
n
95
ARG
110
A
LYS
111
n
96
LYS
111
A
GLU
112
n
97
GLU
112
A
GLU
113
n
98
GLU
113
A
n
99
114
A
n
100
115
A
n
101
116
A
n
102
117
A
n
103
118
A
n
104
119
A
n
105
120
A
n
106
121
A
n
107
122
A
n
108
123
A
n
109
124
A
n
110
125
A
n
1
230
B
n
2
231
B
n
3
232
B
n
4
233
B
ILE
234
n
5
ILE
234
B
CYS
235
n
6
CYS
235
B
ALA
236
n
7
ALA
236
B
ILE
237
n
8
ILE
237
B
CYS
238
n
9
CYS
238
B
GLY
239
n
10
GLY
239
B
ASP
240
n
11
ASP
240
B
ARG
241
n
12
ARG
241
B
SER
242
n
13
SER
242
B
SER
243
n
14
SER
243
B
GLY
244
n
15
GLY
244
B
LYS
245
n
16
LYS
245
B
HIS
246
n
17
HIS
246
B
TYR
247
n
18
TYR
247
B
GLY
248
n
19
GLY
248
B
VAL
249
n
20
VAL
249
B
TYR
250
n
21
TYR
250
B
SER
251
n
22
SER
251
B
CYS
252
n
23
CYS
252
B
GLU
253
n
24
GLU
253
B
GLY
254
n
25
GLY
254
B
CYS
255
n
26
CYS
255
B
LYS
256
n
27
LYS
256
B
GLY
257
n
28
GLY
257
B
PHE
258
n
29
PHE
258
B
PHE
259
n
30
PHE
259
B
LYS
260
n
31
LYS
260
B
ARG
261
n
32
ARG
261
B
THR
262
n
33
THR
262
B
VAL
263
n
34
VAL
263
B
ARG
264
n
35
ARG
264
B
LYS
265
n
36
LYS
265
B
ASP
266
n
37
ASP
266
B
LEU
267
n
38
LEU
267
B
THR
268
n
39
THR
268
B
TYR
269
n
40
TYR
269
B
THR
270
n
41
THR
270
B
CYS
271
n
42
CYS
271
B
ARG
272
n
43
ARG
272
B
ASP
273
n
44
ASP
273
B
ASN
274
n
45
ASN
274
B
LYS
275
n
46
LYS
275
B
ASP
276
n
47
ASP
276
B
CYS
277
n
48
CYS
277
B
LEU
278
n
49
LEU
278
B
ILE
279
n
50
ILE
279
B
ASP
280
n
51
ASP
280
B
LYS
281
n
52
LYS
281
B
ARG
282
n
53
ARG
282
B
GLN
283
n
54
GLN
283
B
ARG
284
n
55
ARG
284
B
ASN
285
n
56
ASN
285
B
ARG
286
n
57
ARG
286
B
CYS
287
n
58
CYS
287
B
GLN
288
n
59
GLN
288
B
TYR
289
n
60
TYR
289
B
CYS
290
n
61
CYS
290
B
ARG
291
n
62
ARG
291
B
TYR
292
n
63
TYR
292
B
GLN
293
n
64
GLN
293
B
LYS
294
n
65
LYS
294
B
CYS
295
n
66
CYS
295
B
LEU
296
n
67
LEU
296
B
ALA
297
n
68
ALA
297
B
MET
298
n
69
MET
298
B
GLY
299
n
70
GLY
299
B
MET
300
n
71
MET
300
B
LYS
301
n
72
LYS
301
B
ARG
302
n
73
ARG
302
B
GLU
303
n
74
GLU
303
B
ALA
304
n
75
ALA
304
B
VAL
305
n
76
VAL
305
B
GLN
306
n
77
GLN
306
B
n
78
307
B
n
79
308
B
n
80
309
B
n
81
310
B
n
82
311
B
n
83
312
B
n
84
313
B
n
85
314
B
n
86
315
B
n
87
316
B
n
88
317
B
n
89
318
B
n
90
319
B
n
91
320
B
n
92
321
B
n
93
322
B
n
94
323
B
n
95
324
B
n
96
325
B
n
97
326
B
n
98
327
B
n
99
328
B
author_defined_assembly
4
tetrameric
A
CYS
24
C
SG
CYS
9
1_555
A
ZN
150
E
ZN
ZN
1_555
A
CYS
27
C
SG
CYS
12
1_555
106.1
A
CYS
24
C
SG
CYS
9
1_555
A
ZN
150
E
ZN
ZN
1_555
A
CYS
41
C
SG
CYS
26
1_555
136.8
A
CYS
27
C
SG
CYS
12
1_555
A
ZN
150
E
ZN
ZN
1_555
A
CYS
41
C
SG
CYS
26
1_555
95.0
A
CYS
24
C
SG
CYS
9
1_555
A
ZN
150
E
ZN
ZN
1_555
A
CYS
44
C
SG
CYS
29
1_555
122.5
A
CYS
27
C
SG
CYS
12
1_555
A
ZN
150
E
ZN
ZN
1_555
A
CYS
44
C
SG
CYS
29
1_555
102.0
A
CYS
41
C
SG
CYS
26
1_555
A
ZN
150
E
ZN
ZN
1_555
A
CYS
44
C
SG
CYS
29
1_555
87.8
A
CYS
60
C
SG
CYS
45
1_555
A
ZN
151
F
ZN
ZN
1_555
A
CYS
66
C
SG
CYS
51
1_555
129.8
A
CYS
60
C
SG
CYS
45
1_555
A
ZN
151
F
ZN
ZN
1_555
A
CYS
76
C
SG
CYS
61
1_555
105.7
A
CYS
66
C
SG
CYS
51
1_555
A
ZN
151
F
ZN
ZN
1_555
A
CYS
76
C
SG
CYS
61
1_555
89.3
A
CYS
60
C
SG
CYS
45
1_555
A
ZN
151
F
ZN
ZN
1_555
A
CYS
79
C
SG
CYS
64
1_555
118.7
A
CYS
66
C
SG
CYS
51
1_555
A
ZN
151
F
ZN
ZN
1_555
A
CYS
79
C
SG
CYS
64
1_555
92.4
A
CYS
76
C
SG
CYS
61
1_555
A
ZN
151
F
ZN
ZN
1_555
A
CYS
79
C
SG
CYS
64
1_555
118.7
B
CYS
235
D
SG
CYS
6
1_555
B
ZN
350
G
ZN
ZN
1_555
B
CYS
238
D
SG
CYS
9
1_555
133.2
B
CYS
235
D
SG
CYS
6
1_555
B
ZN
350
G
ZN
ZN
1_555
B
CYS
252
D
SG
CYS
23
1_555
117.0
B
CYS
238
D
SG
CYS
9
1_555
B
ZN
350
G
ZN
ZN
1_555
B
CYS
252
D
SG
CYS
23
1_555
83.0
B
CYS
235
D
SG
CYS
6
1_555
B
ZN
350
G
ZN
ZN
1_555
B
CYS
255
D
SG
CYS
26
1_555
112.9
B
CYS
238
D
SG
CYS
9
1_555
B
ZN
350
G
ZN
ZN
1_555
B
CYS
255
D
SG
CYS
26
1_555
109.7
B
CYS
252
D
SG
CYS
23
1_555
B
ZN
350
G
ZN
ZN
1_555
B
CYS
255
D
SG
CYS
26
1_555
87.4
B
CYS
271
D
SG
CYS
42
1_555
B
ZN
351
H
ZN
ZN
1_555
B
CYS
277
D
SG
CYS
48
1_555
99.0
B
CYS
271
D
SG
CYS
42
1_555
B
ZN
351
H
ZN
ZN
1_555
B
CYS
287
D
SG
CYS
58
1_555
113.9
B
CYS
277
D
SG
CYS
48
1_555
B
ZN
351
H
ZN
ZN
1_555
B
CYS
287
D
SG
CYS
58
1_555
130.8
B
CYS
271
D
SG
CYS
42
1_555
B
ZN
351
H
ZN
ZN
1_555
B
CYS
290
D
SG
CYS
61
1_555
70.4
B
CYS
277
D
SG
CYS
48
1_555
B
ZN
351
H
ZN
ZN
1_555
B
CYS
290
D
SG
CYS
61
1_555
70.7
B
CYS
287
D
SG
CYS
58
1_555
B
ZN
351
H
ZN
ZN
1_555
B
CYS
290
D
SG
CYS
61
1_555
86.6
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
HIS
35
C
N
HIS
20
A
O
ALA
38
C
O
ALA
23
1
A
CG
GLU
98
C
CG
GLU
83
1
Y
1
A
CD
GLU
98
C
CD
GLU
83
1
Y
1
A
OE1
GLU
98
C
OE1
GLU
83
1
Y
1
A
OE2
GLU
98
C
OE2
GLU
83
1
Y
1
A
CG
GLN
101
C
CG
GLN
86
1
Y
1
A
CD
GLN
101
C
CD
GLN
86
1
Y
1
A
OE1
GLN
101
C
OE1
GLN
86
1
Y
1
A
NE2
GLN
101
C
NE2
GLN
86
1
Y
1
B
CG
LYS
245
D
CG
LYS
16
1
Y
1
B
CD
LYS
245
D
CD
LYS
16
1
Y
1
B
CE
LYS
245
D
CE
LYS
16
1
Y
1
B
NZ
LYS
245
D
NZ
LYS
16
1
Y
1
B
CG
ARG
282
D
CG
ARG
53
1
Y
1
B
CD
ARG
282
D
CD
ARG
53
1
Y
1
B
NE
ARG
282
D
NE
ARG
53
1
Y
1
B
CZ
ARG
282
D
CZ
ARG
53
1
Y
1
B
NH1
ARG
282
D
NH1
ARG
53
1
Y
1
B
NH2
ARG
282
D
NH2
ARG
53
1
Y
1
B
CG
ARG
286
D
CG
ARG
57
1
Y
1
B
CD
ARG
286
D
CD
ARG
57
1
Y
1
B
NE
ARG
286
D
NE
ARG
57
1
Y
1
B
CZ
ARG
286
D
CZ
ARG
57
1
Y
1
B
NH1
ARG
286
D
NH1
ARG
57
1
Y
1
B
NH2
ARG
286
D
NH2
ARG
57
1
Y
1
A
PHE
16
C
PHE
1
1
Y
1
A
ASP
17
C
ASP
2
1
Y
1
A
GLU
114
C
GLU
99
1
Y
1
A
ALA
115
C
ALA
100
1
Y
1
A
LEU
116
C
LEU
101
1
Y
1
A
LYS
117
C
LYS
102
1
Y
1
A
ASP
118
C
ASP
103
1
Y
1
A
SER
119
C
SER
104
1
Y
1
A
LEU
120
C
LEU
105
1
Y
1
A
ARG
121
C
ARG
106
1
Y
1
A
PRO
122
C
PRO
107
1
Y
1
A
LYS
123
C
LYS
108
1
Y
1
A
LEU
124
C
LEU
109
1
Y
1
A
SER
125
C
SER
110
1
Y
1
B
PHE
230
D
PHE
1
1
Y
1
B
THR
231
D
THR
2
1
Y
1
B
LYS
232
D
LYS
3
1
Y
1
B
HIS
233
D
HIS
4
1
Y
1
B
GLU
307
D
GLU
78
1
Y
1
B
GLU
308
D
GLU
79
1
Y
1
B
ARG
309
D
ARG
80
1
Y
1
B
GLN
310
D
GLN
81
1
Y
1
B
ARG
311
D
ARG
82
1
Y
1
B
GLY
312
D
GLY
83
1
Y
1
B
LYS
313
D
LYS
84
1
Y
1
B
ASP
314
D
ASP
85
1
Y
1
B
ARG
315
D
ARG
86
1
Y
1
B
ASN
316
D
ASN
87
1
Y
1
B
GLU
317
D
GLU
88
1
Y
1
B
ASN
318
D
ASN
89
1
Y
1
B
GLU
319
D
GLU
90
1
Y
1
B
VAL
320
D
VAL
91
1
Y
1
B
GLU
321
D
GLU
92
1
Y
1
B
SER
322
D
SER
93
1
Y
1
B
THR
323
D
THR
94
1
Y
1
B
SER
324
D
SER
95
1
Y
1
B
SER
325
D
SER
96
1
Y
1
B
ALA
326
D
ALA
97
1
Y
1
B
ASN
327
D
ASN
98
1
Y
1
B
GLU
328
D
GLU
99
1
Y
1
C
DT
401
0.068
SIDE CHAIN
1
C
DA
412
0.061
SIDE CHAIN
1
D
DT
419
0.107
SIDE CHAIN
1
D
DA
423
0.084
SIDE CHAIN
1
D
DC
425
0.064
SIDE CHAIN
1
D
DT
430
0.072
SIDE CHAIN
1
D
DA
436
0.057
SIDE CHAIN
1
A
ASN
19
81.50
2.03
1
A
PRO
21
-30.06
124.65
1
A
ARG
22
-70.74
43.28
1
A
VAL
26
-97.77
-64.42
1
A
ASP
29
-58.21
179.49
1
A
PHE
36
26.73
50.83
1
A
ALA
62
-52.78
-156.39
1
A
ASN
63
-99.41
46.71
1
A
ASP
65
-169.81
36.71
1
A
ARG
73
-14.24
-73.15
1
A
ARG
74
-43.28
-10.51
1
A
GLU
98
-47.15
-77.96
1
A
GLU
99
-27.31
-56.06
1
A
ARG
102
-41.46
-71.00
1
A
ARG
110
-76.00
34.68
1
A
GLU
112
-43.00
98.78
1
B
ILE
237
-99.30
-72.41
1
B
ASP
240
-34.71
165.30
1
B
TYR
247
27.26
43.02
1
B
SER
251
-172.36
148.77
1
B
LYS
260
-74.66
-70.09
1
B
ASP
273
-139.24
-122.10
1
B
ASP
276
-155.20
26.38
1
B
GLN
283
-112.26
61.66
1
B
ARG
291
-63.86
-75.23
PROTEIN_REP.PARAM
PROTEIN.TOP
DNA-RNA_REP.PARAM
DNA-RNA.TOP
ION.PARAM
ION.TOP
PARAM_ZN
97.6
-20.69
0.00
-18.54
24.55
0.00
-3.86
0.283
0.010
0.232
3.00
50.
823
8849
5.0
87.6
RANDOM
800311.58
0.000000
1
RESTRAINED
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
PDB ENTRY 1KB4 and 1DSZ
FLAT MODEL
34.7974
0.287038
0.53
0.45
5.00
0.53
0.63
3.00
50.
0
2070
4
731
1335
0.014
1.6
21.5
1.42
0.91
1.50
1.61
2.00
1.63
2.00
2.65
2.50
0.373
0.043
0.431
3.11
75
1179
10
6.0
66.9
3.00
50.
1YNW
18127
-3
0.045
1
31.2
3.4
96.3
0.34
3.00
3.11
2.6
1844
1
97.5
data collection
HKL-2000
data reduction
HKL-2000
refinement
CNS
data scaling
HKL-2000
phasing
CNS
Crystal Structure of Vitamin D Receptor and 9-cis Retinoic Acid Receptor DNA-Binding Domains Bound to a DR3 Response Element
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
5
N
N
5
N
N
A
CYS
41
C
CYS
26
HELX_P
A
LYS
55
C
LYS
40
1
1
15
A
ASN
72
C
ASN
57
HELX_P
A
ALA
75
C
ALA
60
5
2
4
A
CYS
76
C
CYS
61
HELX_P
A
ILE
87
C
ILE
72
1
3
12
A
MET
90
C
MET
75
HELX_P
A
ILE
94
C
ILE
79
5
4
5
A
THR
96
C
THR
81
HELX_P
A
ARG
110
C
ARG
95
1
5
15
B
GLU
253
D
GLU
24
HELX_P
B
LYS
265
D
LYS
36
1
6
13
B
CYS
287
D
CYS
58
HELX_P
B
MET
298
D
MET
69
1
7
12
metalc
2.469
A
CYS
24
C
SG
CYS
9
1_555
A
ZN
150
E
ZN
ZN
1_555
metalc
2.655
A
CYS
27
C
SG
CYS
12
1_555
A
ZN
150
E
ZN
ZN
1_555
metalc
2.608
A
CYS
41
C
SG
CYS
26
1_555
A
ZN
150
E
ZN
ZN
1_555
metalc
2.536
A
CYS
44
C
SG
CYS
29
1_555
A
ZN
150
E
ZN
ZN
1_555
metalc
2.426
A
CYS
60
C
SG
CYS
45
1_555
A
ZN
151
F
ZN
ZN
1_555
metalc
2.274
A
CYS
66
C
SG
CYS
51
1_555
A
ZN
151
F
ZN
ZN
1_555
metalc
2.354
A
CYS
76
C
SG
CYS
61
1_555
A
ZN
151
F
ZN
ZN
1_555
metalc
2.375
A
CYS
79
C
SG
CYS
64
1_555
A
ZN
151
F
ZN
ZN
1_555
metalc
2.422
B
CYS
235
D
SG
CYS
6
1_555
B
ZN
350
G
ZN
ZN
1_555
metalc
2.473
B
CYS
238
D
SG
CYS
9
1_555
B
ZN
350
G
ZN
ZN
1_555
metalc
2.553
B
CYS
252
D
SG
CYS
23
1_555
B
ZN
350
G
ZN
ZN
1_555
metalc
2.221
B
CYS
255
D
SG
CYS
26
1_555
B
ZN
350
G
ZN
ZN
1_555
metalc
2.578
B
CYS
271
D
SG
CYS
42
1_555
B
ZN
351
H
ZN
ZN
1_555
metalc
2.463
B
CYS
277
D
SG
CYS
48
1_555
B
ZN
351
H
ZN
ZN
1_555
metalc
2.227
B
CYS
287
D
SG
CYS
58
1_555
B
ZN
351
H
ZN
ZN
1_555
metalc
2.761
B
CYS
290
D
SG
CYS
61
1_555
B
ZN
351
H
ZN
ZN
1_555
hydrog
WATSON-CRICK
C
DT
402
A
N3
DT
2
1_555
D
DA
436
B
N1
DA
18
1_555
hydrog
WATSON-CRICK
C
DT
402
A
O4
DT
2
1_555
D
DA
436
B
N6
DA
18
1_555
hydrog
WATSON-CRICK
C
DA
403
A
N1
DA
3
1_555
D
DT
435
B
N3
DT
17
1_555
hydrog
WATSON-CRICK
C
DA
403
A
N6
DA
3
1_555
D
DT
435
B
O4
DT
17
1_555
hydrog
WATSON-CRICK
C
DG
404
A
N1
DG
4
1_555
D
DC
434
B
N3
DC
16
1_555
hydrog
WATSON-CRICK
C
DG
404
A
N2
DG
4
1_555
D
DC
434
B
O2
DC
16
1_555
hydrog
WATSON-CRICK
C
DG
404
A
O6
DG
4
1_555
D
DC
434
B
N4
DC
16
1_555
hydrog
WATSON-CRICK
C
DG
405
A
N1
DG
5
1_555
D
DC
433
B
N3
DC
15
1_555
hydrog
WATSON-CRICK
C
DG
405
A
N2
DG
5
1_555
D
DC
433
B
O2
DC
15
1_555
hydrog
WATSON-CRICK
C
DG
405
A
O6
DG
5
1_555
D
DC
433
B
N4
DC
15
1_555
hydrog
WATSON-CRICK
C
DT
406
A
N3
DT
6
1_555
D
DA
432
B
N1
DA
14
1_555
hydrog
WATSON-CRICK
C
DT
406
A
O4
DT
6
1_555
D
DA
432
B
N6
DA
14
1_555
hydrog
WATSON-CRICK
C
DC
407
A
N3
DC
7
1_555
D
DG
431
B
N1
DG
13
1_555
hydrog
WATSON-CRICK
C
DC
407
A
N4
DC
7
1_555
D
DG
431
B
O6
DG
13
1_555
hydrog
WATSON-CRICK
C
DC
407
A
O2
DC
7
1_555
D
DG
431
B
N2
DG
13
1_555
hydrog
WATSON-CRICK
C
DA
408
A
N1
DA
8
1_555
D
DT
430
B
N3
DT
12
1_555
hydrog
WATSON-CRICK
C
DA
408
A
N6
DA
8
1_555
D
DT
430
B
O4
DT
12
1_555
hydrog
WATSON-CRICK
C
DC
409
A
N3
DC
9
1_555
D
DG
429
B
N1
DG
11
1_555
hydrog
WATSON-CRICK
C
DC
409
A
N4
DC
9
1_555
D
DG
429
B
O6
DG
11
1_555
hydrog
WATSON-CRICK
C
DC
409
A
O2
DC
9
1_555
D
DG
429
B
N2
DG
11
1_555
hydrog
WATSON-CRICK
C
DG
410
A
N1
DG
10
1_555
D
DC
428
B
N3
DC
10
1_555
hydrog
WATSON-CRICK
C
DG
410
A
N2
DG
10
1_555
D
DC
428
B
O2
DC
10
1_555
hydrog
WATSON-CRICK
C
DG
410
A
O6
DG
10
1_555
D
DC
428
B
N4
DC
10
1_555
hydrog
WATSON-CRICK
C
DA
411
A
N1
DA
11
1_555
D
DT
427
B
N3
DT
9
1_555
hydrog
WATSON-CRICK
C
DA
411
A
N6
DA
11
1_555
D
DT
427
B
O4
DT
9
1_555
hydrog
WATSON-CRICK
C
DA
412
A
N1
DA
12
1_555
D
DT
426
B
N3
DT
8
1_555
hydrog
WATSON-CRICK
C
DA
412
A
N6
DA
12
1_555
D
DT
426
B
O4
DT
8
1_555
hydrog
WATSON-CRICK
C
DG
413
A
N1
DG
13
1_555
D
DC
425
B
N3
DC
7
1_555
hydrog
WATSON-CRICK
C
DG
413
A
N2
DG
13
1_555
D
DC
425
B
O2
DC
7
1_555
hydrog
WATSON-CRICK
C
DG
413
A
O6
DG
13
1_555
D
DC
425
B
N4
DC
7
1_555
hydrog
WATSON-CRICK
C
DG
414
A
N1
DG
14
1_555
D
DC
424
B
N3
DC
6
1_555
hydrog
WATSON-CRICK
C
DG
414
A
N2
DG
14
1_555
D
DC
424
B
O2
DC
6
1_555
hydrog
WATSON-CRICK
C
DG
414
A
O6
DG
14
1_555
D
DC
424
B
N4
DC
6
1_555
hydrog
WATSON-CRICK
C
DT
415
A
N3
DT
15
1_555
D
DA
423
B
N1
DA
5
1_555
hydrog
WATSON-CRICK
C
DT
415
A
O4
DT
15
1_555
D
DA
423
B
N6
DA
5
1_555
hydrog
WATSON-CRICK
C
DC
416
A
N3
DC
16
1_555
D
DG
422
B
N1
DG
4
1_555
hydrog
WATSON-CRICK
C
DC
416
A
N4
DC
16
1_555
D
DG
422
B
O6
DG
4
1_555
hydrog
WATSON-CRICK
C
DC
416
A
O2
DC
16
1_555
D
DG
422
B
N2
DG
4
1_555
hydrog
WATSON-CRICK
C
DA
417
A
N1
DA
17
1_555
D
DT
421
B
N3
DT
3
1_555
hydrog
WATSON-CRICK
C
DA
417
A
N6
DA
17
1_555
D
DT
421
B
O4
DT
3
1_555
hydrog
WATSON-CRICK
C
DA
418
A
N1
DA
18
1_555
D
DT
420
B
N3
DT
2
1_555
hydrog
WATSON-CRICK
C
DA
418
A
N6
DA
18
1_555
D
DT
420
B
O4
DT
2
1_555
TRANSCRIPTION/DNA
VDR; RXR; Nuclear Receptor; Protein-DNA Complex, TRANSCRIPTION-DNA COMPLEX
VDR_HUMAN
UNP
3
16
P11473
FDRNVPRICGVCGDRATGFHFNAMTCEGCKGFFRRSMKRKALFTCPFNGDCRITKDNRRHCQACRLKRCVDIGMMKEFIL
TDEEVQRKREMILKRKEEEALKDSLRPKLS
RXRA_HUMAN
UNP
4
130
P19793
FTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER
QRGKDRNENEVESTSSANE
1YNW
PDB
1
1YNW
1YNW
PDB
2
1YNW
16
125
1YNW
16
125
P11473
A
1
1
110
130
228
1YNW
230
328
P19793
B
2
1
99
401
418
1YNW
401
418
1YNW
C
3
1
18
419
436
1YNW
419
436
1YNW
D
4
1
18
1
PRO
engineered mutation
ALA
61
1YNW
A
P11473
UNP
61
46
1
PHE
engineered mutation
ALA
62
1YNW
A
P11473
UNP
62
47
1
HIS
engineered mutation
ALA
75
1YNW
A
P11473
UNP
75
60
2
anti-parallel
A
PHE
34
C
PHE
19
A
HIS
35
C
HIS
20
A
ALA
38
C
ALA
23
A
MET
39
C
MET
24
BINDING SITE FOR RESIDUE ZN A 150
A
ZN
150
Software
4
BINDING SITE FOR RESIDUE ZN A 151
A
ZN
151
Software
4
BINDING SITE FOR RESIDUE ZN B 350
B
ZN
350
Software
4
BINDING SITE FOR RESIDUE ZN B 351
B
ZN
351
Software
4
A
CYS
24
C
CYS
9
4
1_555
A
CYS
27
C
CYS
12
4
1_555
A
CYS
41
C
CYS
26
4
1_555
A
CYS
44
C
CYS
29
4
1_555
A
CYS
60
C
CYS
45
4
1_555
A
CYS
66
C
CYS
51
4
1_555
A
CYS
76
C
CYS
61
4
1_555
A
CYS
79
C
CYS
64
4
1_555
B
CYS
235
D
CYS
6
4
1_555
B
CYS
238
D
CYS
9
4
1_555
B
CYS
252
D
CYS
23
4
1_555
B
CYS
255
D
CYS
26
4
1_555
B
CYS
271
D
CYS
42
4
1_555
B
CYS
277
D
CYS
48
4
1_555
B
CYS
287
D
CYS
58
4
1_555
B
CYS
290
D
CYS
61
4
1_555
5
monoclinic
C 1 2 1