0.013078 0.000000 0.000000 0.000000 0.011896 0.000000 0.000000 0.000000 0.008890 0.00000 0.00000 0.00000 Muzzolini, L. Versees, W. Steyaert, J. Degano, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 76.466 84.062 112.483 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Ca 2 40.078 CALCIUM ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C5 H10 O5 150.130 alpha-D-ribofuranose alpha-D-ribose; D-ribose; ribose D-saccharide, alpha linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N CA N 75 N N N 76 R C N 77 N C N 78 N O N 79 N C N 80 N S N 81 N O N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N N N 90 S C N 91 N C N 92 N O N 93 N C N 94 N C N 95 N C N 96 N O N 97 N N N 98 N O N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N N N 110 S C N 111 N C N 112 N O N 113 N C N 114 N C N 115 N C N 116 N O N 117 N O N 118 N O N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N N N 129 N C N 130 N C N 131 N O N 132 N O N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N N N 139 S C N 140 N C N 141 N O N 142 N C Y 143 N C Y 144 N N Y 145 N C Y 146 N C Y 147 N N N 148 N O N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N O N 160 N H N 161 N H N 162 N N N 163 S C N 164 N C N 165 N O N 166 S C N 167 N C N 168 N C N 169 N C N 170 N O N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N N N 185 S C N 186 N C N 187 N O N 188 N C N 189 N C N 190 N C N 191 N C N 192 N O N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N N N 207 S C N 208 N C N 209 N O N 210 N C N 211 N C N 212 N C N 213 N C N 214 N N N 215 N O N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N N N 232 S C N 233 N C N 234 N O N 235 N C N 236 N C N 237 N S N 238 N C N 239 N O N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N N N 252 S C N 253 N C N 254 N O N 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C Y 261 N C N 262 N O N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N N N 275 S C N 276 N C N 277 N O N 278 N C N 279 N C N 280 N C N 281 N O N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N O N 292 N C N 293 R C N 294 N O N 295 S C N 296 N O N 297 R C N 298 N O N 299 S C N 300 N O N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N N N 312 S C N 313 N C N 314 N O N 315 N C N 316 N O N 317 N O N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N N N 326 S C N 327 N C N 328 N O N 329 R C N 330 N O N 331 N C N 332 N O N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N N N 343 S C N 344 N C N 345 N O N 346 N C Y 347 N C Y 348 N C Y 349 N C Y 350 N N Y 351 N C Y 352 N C Y 353 N C Y 354 N C Y 355 N C N 356 N O N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N N N 370 S C N 371 N C N 372 N O N 373 N C Y 374 N C Y 375 N C Y 376 N C Y 377 N C Y 378 N C Y 379 N C N 380 N O N 381 N O N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N N N 394 S C N 395 N C N 396 N O N 397 N C N 398 N C N 399 N C N 400 N O N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N doub N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N doub N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N doub N 333 N sing N 334 N sing N 335 N sing N 336 N sing Y 337 N doub Y 338 N sing Y 339 N sing N 340 N sing Y 341 N doub Y 342 N sing Y 343 N sing N 344 N sing Y 345 N sing Y 346 N doub N 347 N sing Y 348 N doub N 349 N sing Y 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N doub N 361 N sing N 362 N sing N 363 N sing N 364 N sing Y 365 N doub Y 366 N sing Y 367 N sing N 368 N sing Y 369 N doub N 370 N sing Y 371 N doub N 372 N sing Y 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N doub N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing To be Published 0353 Crystal structure of the E. coli pyrimidine nucleoside hydrolase YbeK with bound ribose UK Structure STRUE6 2005 0969-2126 12 739 749 10.1016/j.str.2004.03.018 15130467 Crystal structure to 1.7 a of the Escherichia coli pyrimidine nucleoside hydrolase YeiK, a novel candidate for cancer gene therapy 2004 UK J.Mol.Biol. JMOBAK 0070 0022-2836 307 1363 1379 10.1006/jmbi.2001.4548 11292348 Structure and function of a novel purine specific nucleoside hydrolase from Trypanosoma vivax 2001 US Biochemistry BICHAW 0033 0006-2960 37 6277 6285 10.1021/bi973012e 9572842 Trypanosomal nucleoside hydrolase. A novel mechanism from the structure with a transition-state inhibitor 1998 10.2210/pdb1yoe/pdb pdb_00001yoe RIB A 2001 HAS WRONG CHIRALITY AT ATOM C1 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD ADSC QUANTUM 4 Mirrors SINGLE WAVELENGTH M x-ray 1 0.933 1.0 ID14-2 ESRF 0.933 SYNCHROTRON ESRF BEAMLINE ID14-2 35128.105 Hypothetical protein ybeK 3.2.2.8 1 man polymer 150.130 alpha-D-ribofuranose 1 man non-polymer 40.078 CALCIUM ION 1 syn non-polymer 18.015 water 215 nat water no no MRGSHHHHHHGSALPILLDCDPGHDDAIAIVLALASPELDVKAITSSAGNQTPEKTLRNVLRMLTLLNRTDIPVAGGAVK PLMRELIIADNVHGESGLDGPALPEPTFAPQNCTAVELMAKTLRESAEPVTIVSTGPQTNVALLLNSHPELHSKIARIVI MGGAMGLGNWTPAAEFNIYVDPEAAEIVFQSGIPVVMAGLDVTHKAQIHVEDTERFRAIGNPVSTIVAELLDFFLEYHKD EKWGFVGAPLHDPCTIAWLLKPELFTSVERWVGVETQGKYTQGMTVVDYYYLTGNKPNATVMVDVDRQGFVDLLADRLKF YA MRGSHHHHHHGSALPILLDCDPGHDDAIAIVLALASPELDVKAITSSAGNQTPEKTLRNVLRMLTLLNRTDIPVAGGAVK PLMRELIIADNVHGESGLDGPALPEPTFAPQNCTAVELMAKTLRESAEPVTIVSTGPQTNVALLLNSHPELHSKIARIVI MGGAMGLGNWTPAAEFNIYVDPEAAEIVFQSGIPVVMAGLDVTHKAQIHVEDTERFRAIGNPVSTIVAELLDFFLEYHKD EKWGFVGAPLHDPCTIAWLLKPELFTSVERWVGVETQGKYTQGMTVVDYYYLTGNKPNATVMVDVDRQGFVDLLADRLKF YA A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Escherichia Escherichia sample ybeK/rihA 562 Escherichia coli 562 Escherichia coli WK6 plasmid pQE30 1 2.6 51.9 VAPOR DIFFUSION, HANGING DROP 5 MPD, Sodium Acetate, ribose, pH 5, VAPOR DIFFUSION, HANGING DROP, temperature 298K 298 atom_site chem_comp database_PDB_caveat entity pdbx_chem_comp_identifier pdbx_entity_nonpoly pdbx_struct_conn_angle pdbx_validate_chiral struct_conn struct_ref_seq_dif struct_site struct_site_gen chem_comp chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model repository Initial release Carbohydrate remediation repository Remediation Version format compliance Advisory Derived calculations Version format compliance Advisory Atomic model Data collection Database references Derived calculations Structure summary Data collection Database references Refinement description Structure summary 1 0 2006-01-17 1 1 2008-04-30 1 2 2011-07-13 2 0 2020-07-29 2 1 2023-10-25 _atom_site.auth_atom_id _atom_site.label_atom_id _chem_comp.name _chem_comp.type _entity.pdbx_description _pdbx_entity_nonpoly.name _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _pdbx_validate_chiral.auth_atom_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_ref_seq_dif.details _chem_comp.pdbx_synonyms _database_2.pdbx_DOI _database_2.pdbx_database_accession DRibfa a-D-ribofuranose a-D-Ribf Rib RCSB Y PDBJ 2005-01-27 REL REL RIB alpha-D-ribofuranose CA CALCIUM ION HOH water 1Q8F YeiK PDB code 1Q8F PDB experimental model RIB 1 2 RIB RIB 2001 A CA 1 3 CA CA 1001 A HOH 1 4 HOH HOH 2002 A HOH 2 4 HOH HOH 2003 A HOH 3 4 HOH HOH 2004 A HOH 4 4 HOH HOH 2005 A HOH 5 4 HOH HOH 2006 A HOH 6 4 HOH HOH 2007 A HOH 7 4 HOH HOH 2008 A HOH 8 4 HOH HOH 2009 A HOH 9 4 HOH HOH 2010 A HOH 10 4 HOH HOH 2011 A HOH 11 4 HOH HOH 2012 A HOH 12 4 HOH HOH 2013 A HOH 13 4 HOH HOH 2014 A HOH 14 4 HOH HOH 2015 A HOH 15 4 HOH HOH 2016 A HOH 16 4 HOH HOH 2017 A HOH 17 4 HOH HOH 2018 A HOH 18 4 HOH HOH 2019 A HOH 19 4 HOH HOH 2020 A HOH 20 4 HOH HOH 2021 A HOH 21 4 HOH HOH 2022 A HOH 22 4 HOH HOH 2023 A HOH 23 4 HOH HOH 2024 A HOH 24 4 HOH HOH 2025 A HOH 25 4 HOH HOH 2026 A HOH 26 4 HOH HOH 2027 A HOH 27 4 HOH HOH 2028 A HOH 28 4 HOH HOH 2029 A HOH 29 4 HOH HOH 2030 A HOH 30 4 HOH HOH 2031 A HOH 31 4 HOH HOH 2032 A HOH 32 4 HOH HOH 2033 A HOH 33 4 HOH HOH 2034 A HOH 34 4 HOH HOH 2035 A HOH 35 4 HOH HOH 2036 A HOH 36 4 HOH HOH 2037 A HOH 37 4 HOH HOH 2038 A HOH 38 4 HOH HOH 2039 A HOH 39 4 HOH HOH 2040 A HOH 40 4 HOH HOH 2041 A HOH 41 4 HOH HOH 2042 A HOH 42 4 HOH HOH 2043 A HOH 43 4 HOH HOH 2044 A HOH 44 4 HOH HOH 2045 A HOH 45 4 HOH HOH 2046 A HOH 46 4 HOH HOH 2047 A HOH 47 4 HOH HOH 2048 A HOH 48 4 HOH HOH 2049 A HOH 49 4 HOH HOH 2050 A HOH 50 4 HOH HOH 2051 A HOH 51 4 HOH HOH 2052 A HOH 52 4 HOH HOH 2053 A HOH 53 4 HOH HOH 2054 A HOH 54 4 HOH HOH 2055 A HOH 55 4 HOH HOH 2056 A HOH 56 4 HOH HOH 2057 A HOH 57 4 HOH HOH 2058 A HOH 58 4 HOH HOH 2059 A HOH 59 4 HOH HOH 2060 A HOH 60 4 HOH HOH 2061 A HOH 61 4 HOH HOH 2062 A HOH 62 4 HOH HOH 2063 A HOH 63 4 HOH HOH 2064 A HOH 64 4 HOH HOH 2065 A HOH 65 4 HOH HOH 2066 A HOH 66 4 HOH HOH 2067 A HOH 67 4 HOH HOH 2068 A HOH 68 4 HOH HOH 2069 A HOH 69 4 HOH HOH 2070 A HOH 70 4 HOH HOH 2071 A HOH 71 4 HOH HOH 2072 A HOH 72 4 HOH HOH 2073 A HOH 73 4 HOH HOH 2074 A HOH 74 4 HOH HOH 2075 A HOH 75 4 HOH HOH 2076 A HOH 76 4 HOH HOH 2077 A HOH 77 4 HOH HOH 2078 A HOH 78 4 HOH HOH 2079 A HOH 79 4 HOH HOH 2080 A HOH 80 4 HOH HOH 2081 A HOH 81 4 HOH HOH 2082 A HOH 82 4 HOH HOH 2083 A HOH 83 4 HOH HOH 2084 A HOH 84 4 HOH HOH 2085 A HOH 85 4 HOH HOH 2086 A HOH 86 4 HOH HOH 2087 A HOH 87 4 HOH HOH 2088 A HOH 88 4 HOH HOH 2089 A HOH 89 4 HOH HOH 2090 A HOH 90 4 HOH HOH 2091 A HOH 91 4 HOH HOH 2092 A HOH 92 4 HOH HOH 2093 A HOH 93 4 HOH HOH 2094 A HOH 94 4 HOH HOH 2095 A HOH 95 4 HOH HOH 2096 A HOH 96 4 HOH HOH 2097 A HOH 98 4 HOH HOH 2098 A HOH 99 4 HOH HOH 2099 A HOH 100 4 HOH HOH 2100 A HOH 101 4 HOH HOH 2101 A HOH 102 4 HOH HOH 2102 A HOH 103 4 HOH HOH 2103 A HOH 104 4 HOH HOH 2104 A HOH 105 4 HOH HOH 2105 A HOH 106 4 HOH HOH 2106 A HOH 107 4 HOH HOH 2107 A HOH 108 4 HOH HOH 2108 A HOH 109 4 HOH HOH 2109 A HOH 110 4 HOH HOH 2110 A HOH 111 4 HOH HOH 2111 A HOH 112 4 HOH HOH 2112 A HOH 113 4 HOH HOH 2113 A HOH 114 4 HOH HOH 2114 A HOH 115 4 HOH HOH 2115 A HOH 116 4 HOH HOH 2116 A HOH 117 4 HOH HOH 2117 A HOH 118 4 HOH HOH 2118 A HOH 119 4 HOH HOH 2119 A HOH 120 4 HOH HOH 2120 A HOH 121 4 HOH HOH 2121 A HOH 122 4 HOH HOH 2122 A HOH 123 4 HOH HOH 2123 A HOH 124 4 HOH HOH 2124 A HOH 125 4 HOH HOH 2125 A HOH 126 4 HOH HOH 2126 A HOH 128 4 HOH HOH 2127 A HOH 129 4 HOH HOH 2128 A HOH 130 4 HOH HOH 2129 A HOH 131 4 HOH HOH 2130 A HOH 132 4 HOH HOH 2131 A HOH 133 4 HOH HOH 2132 A HOH 134 4 HOH HOH 2133 A HOH 135 4 HOH HOH 2134 A HOH 136 4 HOH HOH 2135 A HOH 137 4 HOH HOH 2136 A HOH 138 4 HOH HOH 2137 A HOH 140 4 HOH HOH 2138 A HOH 141 4 HOH HOH 2139 A HOH 142 4 HOH HOH 2140 A HOH 143 4 HOH HOH 2141 A HOH 144 4 HOH HOH 2142 A HOH 145 4 HOH HOH 2143 A HOH 146 4 HOH HOH 2144 A HOH 147 4 HOH HOH 2145 A HOH 148 4 HOH HOH 2146 A HOH 149 4 HOH HOH 2147 A HOH 150 4 HOH HOH 2148 A HOH 151 4 HOH HOH 2149 A HOH 153 4 HOH HOH 2150 A HOH 154 4 HOH HOH 2151 A HOH 155 4 HOH HOH 2152 A HOH 156 4 HOH HOH 2153 A HOH 157 4 HOH HOH 2154 A HOH 158 4 HOH HOH 2155 A HOH 159 4 HOH HOH 2156 A HOH 160 4 HOH HOH 2157 A HOH 161 4 HOH HOH 2158 A HOH 162 4 HOH HOH 2159 A HOH 163 4 HOH HOH 2160 A HOH 164 4 HOH HOH 2161 A HOH 166 4 HOH HOH 2162 A HOH 167 4 HOH HOH 2163 A HOH 168 4 HOH HOH 2164 A HOH 169 4 HOH HOH 2165 A HOH 170 4 HOH HOH 2166 A HOH 171 4 HOH HOH 2167 A HOH 172 4 HOH HOH 2168 A HOH 173 4 HOH HOH 2169 A HOH 174 4 HOH HOH 2170 A HOH 175 4 HOH HOH 2171 A HOH 176 4 HOH HOH 2172 A HOH 177 4 HOH HOH 2173 A HOH 178 4 HOH HOH 2174 A HOH 179 4 HOH HOH 2175 A HOH 180 4 HOH HOH 2176 A HOH 181 4 HOH HOH 2177 A HOH 182 4 HOH HOH 2178 A HOH 183 4 HOH HOH 2179 A HOH 186 4 HOH HOH 2180 A HOH 188 4 HOH HOH 2181 A HOH 189 4 HOH HOH 2182 A HOH 191 4 HOH HOH 2183 A HOH 192 4 HOH HOH 2184 A HOH 196 4 HOH HOH 2185 A HOH 198 4 HOH HOH 2186 A HOH 199 4 HOH HOH 2187 A HOH 202 4 HOH HOH 2188 A HOH 204 4 HOH HOH 2189 A HOH 205 4 HOH HOH 2190 A HOH 206 4 HOH HOH 2191 A HOH 207 4 HOH HOH 2192 A HOH 208 4 HOH HOH 2193 A HOH 210 4 HOH HOH 2194 A HOH 213 4 HOH HOH 2195 A HOH 219 4 HOH HOH 2196 A HOH 220 4 HOH HOH 2197 A HOH 221 4 HOH HOH 2198 A HOH 222 4 HOH HOH 2199 A HOH 224 4 HOH HOH 2200 A HOH 226 4 HOH HOH 2201 A HOH 227 4 HOH HOH 2202 A HOH 228 4 HOH HOH 2203 A HOH 229 4 HOH HOH 2204 A HOH 230 4 HOH HOH 2205 A HOH 231 4 HOH HOH 2206 A HOH 236 4 HOH HOH 2207 A HOH 237 4 HOH HOH 2208 A HOH 238 4 HOH HOH 2209 A HOH 242 4 HOH HOH 2210 A HOH 243 4 HOH HOH 2211 A HOH 245 4 HOH HOH 2212 A HOH 248 4 HOH HOH 2213 A HOH 252 4 HOH HOH 2214 A HOH 264 4 HOH HOH 2215 A HOH 269 4 HOH HOH 2216 A n 1 -10 A n 2 -9 A n 3 -8 A n 4 -7 A n 5 -6 A n 6 -5 A n 7 -4 A n 8 -3 A n 9 -2 A n 10 -1 A GLY 0 n 11 GLY 0 A SER 1 n 12 SER 1 A ALA 2 n 13 ALA 2 A LEU 3 n 14 LEU 3 A PRO 4 n 15 PRO 4 A ILE 5 n 16 ILE 5 A LEU 6 n 17 LEU 6 A LEU 7 n 18 LEU 7 A ASP 8 n 19 ASP 8 A CYS 9 n 20 CYS 9 A ASP 10 n 21 ASP 10 A PRO 11 n 22 PRO 11 A GLY 12 n 23 GLY 12 A HIS 13 n 24 HIS 13 A ASP 14 n 25 ASP 14 A ASP 15 n 26 ASP 15 A ALA 16 n 27 ALA 16 A ILE 17 n 28 ILE 17 A ALA 18 n 29 ALA 18 A ILE 19 n 30 ILE 19 A VAL 20 n 31 VAL 20 A LEU 21 n 32 LEU 21 A ALA 22 n 33 ALA 22 A LEU 23 n 34 LEU 23 A ALA 24 n 35 ALA 24 A SER 25 n 36 SER 25 A PRO 26 n 37 PRO 26 A GLU 27 n 38 GLU 27 A LEU 28 n 39 LEU 28 A ASP 29 n 40 ASP 29 A VAL 30 n 41 VAL 30 A LYS 31 n 42 LYS 31 A ALA 32 n 43 ALA 32 A ILE 33 n 44 ILE 33 A THR 34 n 45 THR 34 A SER 35 n 46 SER 35 A SER 36 n 47 SER 36 A ALA 37 n 48 ALA 37 A GLY 38 n 49 GLY 38 A ASN 39 n 50 ASN 39 A GLN 40 n 51 GLN 40 A THR 41 n 52 THR 41 A PRO 42 n 53 PRO 42 A GLU 43 n 54 GLU 43 A LYS 44 n 55 LYS 44 A THR 45 n 56 THR 45 A LEU 46 n 57 LEU 46 A ARG 47 n 58 ARG 47 A ASN 48 n 59 ASN 48 A VAL 49 n 60 VAL 49 A LEU 50 n 61 LEU 50 A ARG 51 n 62 ARG 51 A MET 52 n 63 MET 52 A LEU 53 n 64 LEU 53 A THR 54 n 65 THR 54 A LEU 55 n 66 LEU 55 A LEU 56 n 67 LEU 56 A ASN 57 n 68 ASN 57 A ARG 58 n 69 ARG 58 A THR 59 n 70 THR 59 A ASP 60 n 71 ASP 60 A ILE 61 n 72 ILE 61 A PRO 62 n 73 PRO 62 A VAL 63 n 74 VAL 63 A ALA 64 n 75 ALA 64 A GLY 65 n 76 GLY 65 A GLY 66 n 77 GLY 66 A ALA 67 n 78 ALA 67 A VAL 68 n 79 VAL 68 A LYS 69 n 80 LYS 69 A PRO 70 n 81 PRO 70 A LEU 71 n 82 LEU 71 A MET 72 n 83 MET 72 A ARG 73 n 84 ARG 73 A GLU 74 n 85 GLU 74 A LEU 75 n 86 LEU 75 A ILE 76 n 87 ILE 76 A ILE 77 n 88 ILE 77 A ALA 78 n 89 ALA 78 A n 90 79 A n 91 80 A n 92 81 A n 93 82 A n 94 83 A GLU 84 n 95 GLU 84 A SER 85 n 96 SER 85 A GLY 86 n 97 GLY 86 A LEU 87 n 98 LEU 87 A ASP 88 n 99 ASP 88 A GLY 89 n 100 GLY 89 A PRO 90 n 101 PRO 90 A ALA 91 n 102 ALA 91 A LEU 92 n 103 LEU 92 A PRO 93 n 104 PRO 93 A GLU 94 n 105 GLU 94 A PRO 95 n 106 PRO 95 A THR 96 n 107 THR 96 A PHE 97 n 108 PHE 97 A ALA 98 n 109 ALA 98 A PRO 99 n 110 PRO 99 A GLN 100 n 111 GLN 100 A ASN 101 n 112 ASN 101 A CYS 102 n 113 CYS 102 A THR 103 n 114 THR 103 A ALA 104 n 115 ALA 104 A VAL 105 n 116 VAL 105 A GLU 106 n 117 GLU 106 A LEU 107 n 118 LEU 107 A MET 108 n 119 MET 108 A ALA 109 n 120 ALA 109 A LYS 110 n 121 LYS 110 A THR 111 n 122 THR 111 A LEU 112 n 123 LEU 112 A ARG 113 n 124 ARG 113 A GLU 114 n 125 GLU 114 A SER 115 n 126 SER 115 A ALA 116 n 127 ALA 116 A GLU 117 n 128 GLU 117 A PRO 118 n 129 PRO 118 A VAL 119 n 130 VAL 119 A THR 120 n 131 THR 120 A ILE 121 n 132 ILE 121 A VAL 122 n 133 VAL 122 A SER 123 n 134 SER 123 A THR 124 n 135 THR 124 A GLY 125 n 136 GLY 125 A PRO 126 n 137 PRO 126 A GLN 127 n 138 GLN 127 A THR 128 n 139 THR 128 A ASN 129 n 140 ASN 129 A VAL 130 n 141 VAL 130 A ALA 131 n 142 ALA 131 A LEU 132 n 143 LEU 132 A LEU 133 n 144 LEU 133 A LEU 134 n 145 LEU 134 A ASN 135 n 146 ASN 135 A SER 136 n 147 SER 136 A HIS 137 n 148 HIS 137 A PRO 138 n 149 PRO 138 A GLU 139 n 150 GLU 139 A LEU 140 n 151 LEU 140 A HIS 141 n 152 HIS 141 A SER 142 n 153 SER 142 A LYS 143 n 154 LYS 143 A ILE 144 n 155 ILE 144 A ALA 145 n 156 ALA 145 A ARG 146 n 157 ARG 146 A ILE 147 n 158 ILE 147 A VAL 148 n 159 VAL 148 A ILE 149 n 160 ILE 149 A MET 150 n 161 MET 150 A GLY 151 n 162 GLY 151 A GLY 152 n 163 GLY 152 A ALA 153 n 164 ALA 153 A MET 154 n 165 MET 154 A GLY 155 n 166 GLY 155 A LEU 156 n 167 LEU 156 A GLY 157 n 168 GLY 157 A ASN 158 n 169 ASN 158 A TRP 159 n 170 TRP 159 A THR 160 n 171 THR 160 A PRO 161 n 172 PRO 161 A ALA 162 n 173 ALA 162 A ALA 163 n 174 ALA 163 A GLU 164 n 175 GLU 164 A PHE 165 n 176 PHE 165 A ASN 166 n 177 ASN 166 A ILE 167 n 178 ILE 167 A TYR 168 n 179 TYR 168 A VAL 169 n 180 VAL 169 A ASP 170 n 181 ASP 170 A PRO 171 n 182 PRO 171 A GLU 172 n 183 GLU 172 A ALA 173 n 184 ALA 173 A ALA 174 n 185 ALA 174 A GLU 175 n 186 GLU 175 A ILE 176 n 187 ILE 176 A VAL 177 n 188 VAL 177 A PHE 178 n 189 PHE 178 A GLN 179 n 190 GLN 179 A SER 180 n 191 SER 180 A GLY 181 n 192 GLY 181 A ILE 182 n 193 ILE 182 A PRO 183 n 194 PRO 183 A VAL 184 n 195 VAL 184 A VAL 185 n 196 VAL 185 A MET 186 n 197 MET 186 A ALA 187 n 198 ALA 187 A GLY 188 n 199 GLY 188 A LEU 189 n 200 LEU 189 A ASP 190 n 201 ASP 190 A VAL 191 n 202 VAL 191 A THR 192 n 203 THR 192 A HIS 193 n 204 HIS 193 A LYS 194 n 205 LYS 194 A ALA 195 n 206 ALA 195 A GLN 196 n 207 GLN 196 A ILE 197 n 208 ILE 197 A HIS 198 n 209 HIS 198 A VAL 199 n 210 VAL 199 A GLU 200 n 211 GLU 200 A ASP 201 n 212 ASP 201 A THR 202 n 213 THR 202 A GLU 203 n 214 GLU 203 A ARG 204 n 215 ARG 204 A PHE 205 n 216 PHE 205 A ARG 206 n 217 ARG 206 A ALA 207 n 218 ALA 207 A ILE 208 n 219 ILE 208 A GLY 209 n 220 GLY 209 A ASN 210 n 221 ASN 210 A PRO 211 n 222 PRO 211 A VAL 212 n 223 VAL 212 A SER 213 n 224 SER 213 A THR 214 n 225 THR 214 A ILE 215 n 226 ILE 215 A VAL 216 n 227 VAL 216 A ALA 217 n 228 ALA 217 A GLU 218 n 229 GLU 218 A LEU 219 n 230 LEU 219 A LEU 220 n 231 LEU 220 A ASP 221 n 232 ASP 221 A PHE 222 n 233 PHE 222 A PHE 223 n 234 PHE 223 A LEU 224 n 235 LEU 224 A GLU 225 n 236 GLU 225 A n 237 226 A n 238 227 A n 239 228 A n 240 229 A n 241 230 A LYS 231 n 242 LYS 231 A TRP 232 n 243 TRP 232 A GLY 233 n 244 GLY 233 A PHE 234 n 245 PHE 234 A VAL 235 n 246 VAL 235 A GLY 236 n 247 GLY 236 A ALA 237 n 248 ALA 237 A PRO 238 n 249 PRO 238 A LEU 239 n 250 LEU 239 A HIS 240 n 251 HIS 240 A ASP 241 n 252 ASP 241 A PRO 242 n 253 PRO 242 A CYS 243 n 254 CYS 243 A THR 244 n 255 THR 244 A ILE 245 n 256 ILE 245 A ALA 246 n 257 ALA 246 A TRP 247 n 258 TRP 247 A LEU 248 n 259 LEU 248 A LEU 249 n 260 LEU 249 A LYS 250 n 261 LYS 250 A PRO 251 n 262 PRO 251 A GLU 252 n 263 GLU 252 A LEU 253 n 264 LEU 253 A PHE 254 n 265 PHE 254 A THR 255 n 266 THR 255 A SER 256 n 267 SER 256 A VAL 257 n 268 VAL 257 A GLU 258 n 269 GLU 258 A ARG 259 n 270 ARG 259 A TRP 260 n 271 TRP 260 A VAL 261 n 272 VAL 261 A GLY 262 n 273 GLY 262 A VAL 263 n 274 VAL 263 A GLU 264 n 275 GLU 264 A THR 265 n 276 THR 265 A GLN 266 n 277 GLN 266 A GLY 267 n 278 GLY 267 A LYS 268 n 279 LYS 268 A TYR 269 n 280 TYR 269 A THR 270 n 281 THR 270 A GLN 271 n 282 GLN 271 A GLY 272 n 283 GLY 272 A MET 273 n 284 MET 273 A THR 274 n 285 THR 274 A VAL 275 n 286 VAL 275 A VAL 276 n 287 VAL 276 A ASP 277 n 288 ASP 277 A TYR 278 n 289 TYR 278 A TYR 279 n 290 TYR 279 A TYR 280 n 291 TYR 280 A LEU 281 n 292 LEU 281 A THR 282 n 293 THR 282 A GLY 283 n 294 GLY 283 A ASN 284 n 295 ASN 284 A LYS 285 n 296 LYS 285 A PRO 286 n 297 PRO 286 A ASN 287 n 298 ASN 287 A ALA 288 n 299 ALA 288 A THR 289 n 300 THR 289 A VAL 290 n 301 VAL 290 A MET 291 n 302 MET 291 A VAL 292 n 303 VAL 292 A ASP 293 n 304 ASP 293 A VAL 294 n 305 VAL 294 A ASP 295 n 306 ASP 295 A ARG 296 n 307 ARG 296 A GLN 297 n 308 GLN 297 A GLY 298 n 309 GLY 298 A PHE 299 n 310 PHE 299 A VAL 300 n 311 VAL 300 A ASP 301 n 312 ASP 301 A LEU 302 n 313 LEU 302 A LEU 303 n 314 LEU 303 A ALA 304 n 315 ALA 304 A ASP 305 n 316 ASP 305 A ARG 306 n 317 ARG 306 A LEU 307 n 318 LEU 307 A LYS 308 n 319 LYS 308 A PHE 309 n 320 PHE 309 A TYR 310 n 321 TYR 310 A ALA 311 n 322 ALA 311 A 0.1453 0.0651 0.0439 0.3512 0.0581 0.1442 -0.0032 0.0185 0.0038 -0.0295 0.0249 0.0211 -0.0068 0.0061 -0.0217 0.0052 -0.0005 -0.0056 0.0178 0.0012 0.0061 refined -4.4330 20.7639 36.7434 X-RAY DIFFRACTION A 1 A 12 A 311 A 322 X-RAY DIFFRACTION 1 author_defined_assembly 4 tetrameric software_defined_assembly PISA 2 dimeric software_defined_assembly PISA 2 dimeric software_defined_assembly PQS 4 tetrameric 10290 -118 41620 2640 -38 23320 A ASP 10 A OD1 ASP 21 1_555 A CA 1001 C CA CA 1_555 A ASP 15 A OD1 ASP 26 1_555 82.0 A ASP 10 A OD1 ASP 21 1_555 A CA 1001 C CA CA 1_555 A ASP 15 A OD2 ASP 26 1_555 71.2 A ASP 15 A OD1 ASP 26 1_555 A CA 1001 C CA CA 1_555 A ASP 15 A OD2 ASP 26 1_555 51.9 A ASP 10 A OD1 ASP 21 1_555 A CA 1001 C CA CA 1_555 A THR 124 A O THR 135 1_555 91.9 A ASP 15 A OD1 ASP 26 1_555 A CA 1001 C CA CA 1_555 A THR 124 A O THR 135 1_555 137.6 A ASP 15 A OD2 ASP 26 1_555 A CA 1001 C CA CA 1_555 A THR 124 A O THR 135 1_555 86.3 A ASP 10 A OD1 ASP 21 1_555 A CA 1001 C CA CA 1_555 A ASP 241 A OD2 ASP 252 1_555 141.7 A ASP 15 A OD1 ASP 26 1_555 A CA 1001 C CA CA 1_555 A ASP 241 A OD2 ASP 252 1_555 74.3 A ASP 15 A OD2 ASP 26 1_555 A CA 1001 C CA CA 1_555 A ASP 241 A OD2 ASP 252 1_555 70.5 A THR 124 A O THR 135 1_555 A CA 1001 C CA CA 1_555 A ASP 241 A OD2 ASP 252 1_555 86.1 A ASP 10 A OD1 ASP 21 1_555 A CA 1001 C CA CA 1_555 A RIB 2001 A B O2 RIB 1_555 120.8 A ASP 15 A OD1 ASP 26 1_555 A CA 1001 C CA CA 1_555 A RIB 2001 A B O2 RIB 1_555 82.4 A ASP 15 A OD2 ASP 26 1_555 A CA 1001 C CA CA 1_555 A RIB 2001 A B O2 RIB 1_555 132.2 A THR 124 A O THR 135 1_555 A CA 1001 C CA CA 1_555 A RIB 2001 A B O2 RIB 1_555 134.0 A ASP 241 A OD2 ASP 252 1_555 A CA 1001 C CA CA 1_555 A RIB 2001 A B O2 RIB 1_555 85.7 A ASP 10 A OD1 ASP 21 1_555 A CA 1001 C CA CA 1_555 A RIB 2001 B B O2 RIB 1_555 123.2 A ASP 15 A OD1 ASP 26 1_555 A CA 1001 C CA CA 1_555 A RIB 2001 B B O2 RIB 1_555 75.6 A ASP 15 A OD2 ASP 26 1_555 A CA 1001 C CA CA 1_555 A RIB 2001 B B O2 RIB 1_555 124.3 A THR 124 A O THR 135 1_555 A CA 1001 C CA CA 1_555 A RIB 2001 B B O2 RIB 1_555 137.8 A ASP 241 A OD2 ASP 252 1_555 A CA 1001 C CA CA 1_555 A RIB 2001 B B O2 RIB 1_555 79.5 A RIB 2001 A B O2 RIB 1_555 A CA 1001 C CA CA 1_555 A RIB 2001 B B O2 RIB 1_555 8.2 A ASP 10 A OD1 ASP 21 1_555 A CA 1001 C CA CA 1_555 A RIB 2001 A B O3 RIB 1_555 136.6 A ASP 15 A OD1 ASP 26 1_555 A CA 1001 C CA CA 1_555 A RIB 2001 A B O3 RIB 1_555 133.7 A ASP 15 A OD2 ASP 26 1_555 A CA 1001 C CA CA 1_555 A RIB 2001 A B O3 RIB 1_555 146.6 A THR 124 A O THR 135 1_555 A CA 1001 C CA CA 1_555 A RIB 2001 A B O3 RIB 1_555 76.3 A ASP 241 A OD2 ASP 252 1_555 A CA 1001 C CA CA 1_555 A RIB 2001 A B O3 RIB 1_555 79.9 A RIB 2001 A B O2 RIB 1_555 A CA 1001 C CA CA 1_555 A RIB 2001 A B O3 RIB 1_555 57.6 A RIB 2001 B B O2 RIB 1_555 A CA 1001 C CA CA 1_555 A RIB 2001 A B O3 RIB 1_555 62.2 A ASP 10 A OD1 ASP 21 1_555 A CA 1001 C CA CA 1_555 A RIB 2001 B B O3 RIB 1_555 140.0 A ASP 15 A OD1 ASP 26 1_555 A CA 1001 C CA CA 1_555 A RIB 2001 B B O3 RIB 1_555 133.2 A ASP 15 A OD2 ASP 26 1_555 A CA 1001 C CA CA 1_555 A RIB 2001 B B O3 RIB 1_555 141.7 A THR 124 A O THR 135 1_555 A CA 1001 C CA CA 1_555 A RIB 2001 B B O3 RIB 1_555 73.8 A ASP 241 A OD2 ASP 252 1_555 A CA 1001 C CA CA 1_555 A RIB 2001 B B O3 RIB 1_555 75.7 A RIB 2001 A B O2 RIB 1_555 A CA 1001 C CA CA 1_555 A RIB 2001 B B O3 RIB 1_555 60.3 A RIB 2001 B B O2 RIB 1_555 A CA 1001 C CA CA 1_555 A RIB 2001 B B O3 RIB 1_555 64.3 A RIB 2001 A B O3 RIB 1_555 A CA 1001 C CA CA 1_555 A RIB 2001 B B O3 RIB 1_555 4.9 A ASP 10 A OD1 ASP 21 1_555 A CA 1001 C CA CA 1_555 A HOH 2002 D O HOH 1_555 70.6 A ASP 15 A OD1 ASP 26 1_555 A CA 1001 C CA CA 1_555 A HOH 2002 D O HOH 1_555 124.2 A ASP 15 A OD2 ASP 26 1_555 A CA 1001 C CA CA 1_555 A HOH 2002 D O HOH 1_555 141.7 A THR 124 A O THR 135 1_555 A CA 1001 C CA CA 1_555 A HOH 2002 D O HOH 1_555 92.0 A ASP 241 A OD2 ASP 252 1_555 A CA 1001 C CA CA 1_555 A HOH 2002 D O HOH 1_555 147.6 A RIB 2001 A B O2 RIB 1_555 A CA 1001 C CA CA 1_555 A HOH 2002 D O HOH 1_555 72.5 A RIB 2001 B B O2 RIB 1_555 A CA 1001 C CA CA 1_555 A HOH 2002 D O HOH 1_555 80.4 A RIB 2001 A B O3 RIB 1_555 A CA 1001 C CA CA 1_555 A HOH 2002 D O HOH 1_555 68.3 A RIB 2001 B B O3 RIB 1_555 A CA 1001 C CA CA 1_555 A HOH 2002 D O HOH 1_555 72.7 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 2_555 -x,-y,z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 3_556 -x,y,-z+1 crystal symmetry operation 0.0000000000 0.0000000000 112.4830000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 4_556 x,-y,-z+1 crystal symmetry operation 0.0000000000 0.0000000000 112.4830000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 2_565 -x,-y+1,z crystal symmetry operation 0.0000000000 84.0620000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 4_566 x,-y+1,-z+1 crystal symmetry operation 0.0000000000 84.0620000000 112.4830000000 A O ALA 64 A O ALA 75 A N SER 35 A N SER 46 A O LYS 31 A O LYS 42 A N ILE 5 A N ILE 16 A N LEU 6 A N LEU 17 A O VAL 122 A O VAL 133 A N ILE 121 A N ILE 132 A O VAL 148 A O VAL 159 A N ILE 149 A N ILE 160 A O VAL 185 A O VAL 196 A N MET 186 A N MET 197 A O THR 289 A O THR 300 A O VAL 290 A O VAL 301 A N VAL 257 A N VAL 268 A N ILE 197 A N ILE 208 A O ALA 237 A O ALA 248 A N GLY 262 A N GLY 273 A O VAL 275 A O VAL 286 1 A MET -10 A MET 1 1 Y 1 A ARG -9 A ARG 2 1 Y 1 A GLY -8 A GLY 3 1 Y 1 A SER -7 A SER 4 1 Y 1 A HIS -6 A HIS 5 1 Y 1 A HIS -5 A HIS 6 1 Y 1 A HIS -4 A HIS 7 1 Y 1 A HIS -3 A HIS 8 1 Y 1 A HIS -2 A HIS 9 1 Y 1 A HIS -1 A HIS 10 1 Y 1 A ASP 79 A ASP 90 1 Y 1 A ASN 80 A ASN 91 1 Y 1 A VAL 81 A VAL 92 1 Y 1 A HIS 82 A HIS 93 1 Y 1 A GLY 83 A GLY 94 1 Y 1 A TYR 226 A TYR 237 1 Y 1 A HIS 227 A HIS 238 1 Y 1 A LYS 228 A LYS 239 1 Y 1 A ASP 229 A ASP 240 1 Y 1 A GLU 230 A GLU 241 1 Y 1 A C1 RIB 2001 WRONG HAND B 17.623 0.62 0.00 0.00 -0.79 0.00 0.17 0.954 0.947 0.19276 0.16733 0.1681 0.16811 1.78 25.0 1086 34056 34056 3.2 97.8 1.818 0.058 RANDOM LIKELY RESIDUAL 1 Individual + TLS THROUGHOUT 0.0 MOLECULAR REPLACEMENT 0.102 0.098 0.80 0.80 1.40 YeiK PDB code 1Q8F MAXIMUM LIKELIHOOD BABINET MODEL WITH MASK 0.098 0.102 1.78 25.0 215 2521 11 0 2295 0.009 0.022 2399 1.305 1.975 3278 5.275 5.000 301 0.072 0.200 388 0.004 0.020 1780 0.191 0.200 1123 0.093 0.200 165 0.060 0.200 1 0.180 0.200 60 0.131 0.200 38 1.000 3.000 1516 1.743 5.000 2467 2.862 7.000 883 4.618 10.000 811 0.242 0.192 1.831 64 1826 1826 20 75.8 18 1.78 25 1YOE 34056 34056 -3 -3 0.116 1 26.2 12.5 97.8 1.78 1.86 2.9 2669 0.475 1 77.4 refinement REFMAC 5.1.19 data reduction DENZO data scaling SCALEPACK phasing MOLREP Crystal structure of a the E. coli pyrimidine nucleoside hydrolase YbeK with bound ribose 1 N N 2 N N 3 N N 4 N N A GLY 12 A GLY 23 HELX_P A ALA 24 A ALA 35 1 1 13 A THR 41 A THR 52 HELX_P A LEU 56 A LEU 67 1 2 16 A THR 103 A THR 114 HELX_P A SER 115 A SER 126 1 3 13 A GLN 127 A GLN 138 HELX_P A HIS 137 A HIS 148 1 4 11 A PRO 138 A PRO 149 HELX_P A SER 142 A SER 153 5 5 5 A GLU 164 A GLU 175 HELX_P A ASP 170 A ASP 181 1 6 7 A ASP 170 A ASP 181 HELX_P A GLN 179 A GLN 190 1 7 10 A GLY 188 A GLY 199 HELX_P A HIS 193 A HIS 204 1 8 6 A HIS 198 A HIS 209 HELX_P A GLY 209 A GLY 220 1 9 12 A ASN 210 A ASN 221 HELX_P A GLU 225 A GLU 236 1 10 16 A ASP 241 A ASP 252 HELX_P A LYS 250 A LYS 261 1 11 10 A ASP 295 A ASP 306 HELX_P A LYS 308 A LYS 319 1 12 14 A PHE 309 A PHE 320 HELX_P A ALA 311 A ALA 322 5 13 3 metalc 2.460 A ASP 10 A OD1 ASP 21 1_555 A CA 1001 C CA CA 1_555 metalc 2.478 A ASP 15 A OD1 ASP 26 1_555 A CA 1001 C CA CA 1_555 metalc 2.487 A ASP 15 A OD2 ASP 26 1_555 A CA 1001 C CA CA 1_555 metalc 2.360 A THR 124 A O THR 135 1_555 A CA 1001 C CA CA 1_555 metalc 2.423 A ASP 241 A OD2 ASP 252 1_555 A CA 1001 C CA CA 1_555 metalc 2.727 A A CA 1001 C CA CA 1_555 A RIB 2001 B O2 RIB 1_555 metalc 2.437 B A CA 1001 C CA CA 1_555 A RIB 2001 B O2 RIB 1_555 metalc 2.700 A A CA 1001 C CA CA 1_555 A RIB 2001 B O3 RIB 1_555 metalc 2.606 B A CA 1001 C CA CA 1_555 A RIB 2001 B O3 RIB 1_555 metalc 2.521 A CA 1001 C CA CA 1_555 A HOH 2002 D O HOH 1_555 HYDROLASE Pyrimidine nucleoside hydrolase, bacterial nucleosidase, ribose, enzyme-product complex, Hydrolase A PRO 11 A PRO 22 1 A GLY 12 A GLY 23 -10.94 YBEK_ECOLI UNP 1 2 P41409 ALPILLDCDPGHDDAIAIVLALASPELDVKAITSSAGNQTPEKTLRNVLRMLTLLNRTDIPVAGGAVKPLMRELIIADNV HGESGLDGPALPEPTFAPQNCTAVELMAKTLRESAEPVTIVSTGPQTNVALLLNSHPELHSKIARIVIMGGAMGLGNWTP AAEFNIYVDPEAAEIVFQSGIPVVMAGLDVTHKAQIHVEDTERFRAIGNPVSTIVAELLDFFLEYHKDEKWGFVGAPLHD PCTIAWLLKPELFTSVERWVGVETQGKYTQGMTVVDYYYLTGNKPNATVMVDVDRQGFVDLLADRLKFYA 2 311 1YOE 2 311 P41409 A 1 13 322 1 expression tag MET -10 1YOE A P41409 UNP 1 1 expression tag ARG -9 1YOE A P41409 UNP 2 1 expression tag GLY -8 1YOE A P41409 UNP 3 1 expression tag SER -7 1YOE A P41409 UNP 4 1 expression tag HIS -6 1YOE A P41409 UNP 5 1 expression tag HIS -5 1YOE A P41409 UNP 6 1 expression tag HIS -4 1YOE A P41409 UNP 7 1 expression tag HIS -3 1YOE A P41409 UNP 8 1 expression tag HIS -2 1YOE A P41409 UNP 9 1 expression tag HIS -1 1YOE A P41409 UNP 10 1 expression tag GLY 0 1YOE A P41409 UNP 11 1 expression tag SER 1 1YOE A P41409 UNP 12 8 2 2 parallel parallel parallel parallel parallel parallel anti-parallel anti-parallel anti-parallel A VAL 63 A VAL 74 A GLY 65 A GLY 76 A LEU 28 A LEU 39 A SER 35 A SER 46 A LEU 3 A LEU 14 A CYS 9 A CYS 20 A VAL 119 A VAL 130 A SER 123 A SER 134 A ILE 144 A ILE 155 A MET 150 A MET 161 A VAL 184 A VAL 195 A ALA 187 A ALA 198 A ALA 288 A ALA 299 A VAL 294 A VAL 305 A PHE 254 A PHE 265 A ARG 259 A ARG 270 A GLN 196 A GLN 207 A ILE 197 A ILE 208 A ALA 237 A ALA 248 A PRO 238 A PRO 249 A VAL 261 A VAL 272 A VAL 263 A VAL 274 A THR 274 A THR 285 A VAL 276 A VAL 287 23 I 2 2 2