1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Oltersdorf, T. Elmore, S.W. Shoemaker, A.R. Armstrong, R.C. Augeri, D.J. Belli, B.A. Bruncko, M. Deckwerth, T.L. Dinges, J. Hajduk, P.J. Joseph, M.K. Kitada, S. Korsmeyer, S.J. Kunzer, A.R. Letai, A. Li, C. Mitten, M.J. Nettesheim, D.G. Ng, S. Nimmer, P.M. O'Connor, J.M. Oleksijew, A. Petros, A.M. Reed, J.C. Shen, W. Tahir, S.K. Thompson, C.B. Tomaselli, K.J. Wang, B. Wendt, M.D. Zhang, H. Fesik, S.W. Rosenberg, S.H. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C27 H22 F N3 O5 S2 551.609 N-[(4'-FLUORO-1,1'-BIPHENYL-4-YL)CARBONYL]-3-NITRO-4-{[2-(PHENYLSULFANYL)ETHYL]AMINO}BENZENESULFONAMIDE non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK Nature NATUAS 0006 0028-0836 435 677 681 10.1038/nature03579 15902208 An inhibitor of Bcl-2 family proteins induces regression of solid tumours 2005 10.2210/pdb1ysi/pdb pdb_00001ysi 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 20804.918 Apoptosis regulator Bcl-X 1 man polymer 551.609 N-[(4'-FLUORO-1,1'-BIPHENYL-4-YL)CARBONYL]-3-NITRO-4-{[2-(PHENYLSULFANYL)ETHYL]AMINO}BENZENESULFONAMIDE 1 syn non-polymer Bcl-2-like 1 protein no no MSMAMSQSNRELVVDFLSYKLSQKGYSWSQFSDVEENRTEAPEGTESEAVKQALREAGDEFELRYRRAFSDLTSQLHITP GTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIAAWMATYLNDHLEPWIQENGGWDTFVELYG NNAAAESRKGQERLEHHHHHH MSMAMSQSNRELVVDFLSYKLSQKGYSWSQFSDVEENRTEAPEGTESEAVKQALREAGDEFELRYRRAFSDLTSQLHITP GTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIAAWMATYLNDHLEPWIQENGGWDTFVELYG NNAAAESRKGQERLEHHHHHH A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia Escherichia coli sample BCL2L1, BCL2L, BCLX 9606 Homo sapiens 469008 Escherichia coli BL21(DE3) BL21(DE3) plasmid pET30b atom_site database_2 pdbx_struct_assembly pdbx_struct_oper_list struct_ref_seq_dif struct_site repository Initial release Version format compliance Version format compliance Atomic model Database references Derived calculations 1 0 2005-06-07 1 1 2007-10-17 1 2 2011-07-13 2 0 2022-03-02 _atom_site.B_iso_or_equiv _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id solution structure of same protein, uncomplexed crystal structure of same protein, uncomplexed solution structure of same protein complexed with bak peptide solution structure of same protein complexed with bad peptide SEQUENCE RESIDUES 49-88 (SEQUENCE DATABASE RESIDUES 45-84) ARE NOT PRESENT DUE TO A LOOP DELETION. RCSB Y RCSB 2005-02-08 REL N3B N-[(4'-FLUORO-1,1'-BIPHENYL-4-YL)CARBONYL]-3-NITRO-4-{[2-(PHENYLSULFANYL)ETHYL]AMINO}BENZENESULFONAMIDE 1 3D_13C-separated_NOESY 3D_13C-edited_12C-filtered_NOESY 50 mM 7.0 ambient 303 K simulated annealing 1mM Bcl-xL U-15N,13C 50mM sodium phosphate, 5 mM deuterated Dithiothreitol, 100% D2O 100% D2O Brunger refinement X-PLOR 3.1 600 Bruker DRX N3B 1000 2 N3B N3B 1000 A MET 1 n 1 MET 1 A SER 2 n 2 SER 2 A MET 3 n 3 MET 3 A ALA 4 n 4 ALA 4 A MET 5 n 5 MET 5 A SER 6 n 6 SER 6 A GLN 7 n 7 GLN 7 A SER 8 n 8 SER 8 A ASN 9 n 9 ASN 9 A ARG 10 n 10 ARG 10 A GLU 11 n 11 GLU 11 A LEU 12 n 12 LEU 12 A VAL 13 n 13 VAL 13 A VAL 14 n 14 VAL 14 A ASP 15 n 15 ASP 15 A PHE 16 n 16 PHE 16 A LEU 17 n 17 LEU 17 A SER 18 n 18 SER 18 A TYR 19 n 19 TYR 19 A LYS 20 n 20 LYS 20 A LEU 21 n 21 LEU 21 A SER 22 n 22 SER 22 A GLN 23 n 23 GLN 23 A LYS 24 n 24 LYS 24 A GLY 25 n 25 GLY 25 A TYR 26 n 26 TYR 26 A SER 27 n 27 SER 27 A TRP 28 n 28 TRP 28 A SER 29 n 29 SER 29 A GLN 30 n 30 GLN 30 A PHE 31 n 31 PHE 31 A SER 32 n 32 SER 32 A ASP 33 n 33 ASP 33 A VAL 34 n 34 VAL 34 A GLU 35 n 35 GLU 35 A GLU 36 n 36 GLU 36 A ASN 37 n 37 ASN 37 A ARG 38 n 38 ARG 38 A THR 39 n 39 THR 39 A GLU 40 n 40 GLU 40 A ALA 41 n 41 ALA 41 A PRO 42 n 42 PRO 42 A GLU 43 n 43 GLU 43 A GLY 44 n 44 GLY 44 A THR 45 n 45 THR 45 A GLU 46 n 46 GLU 46 A SER 47 n 47 SER 47 A GLU 48 n 48 GLU 48 A ALA 89 n 49 ALA 89 A VAL 90 n 50 VAL 90 A LYS 91 n 51 LYS 91 A GLN 92 n 52 GLN 92 A ALA 93 n 53 ALA 93 A LEU 94 n 54 LEU 94 A ARG 95 n 55 ARG 95 A GLU 96 n 56 GLU 96 A ALA 97 n 57 ALA 97 A GLY 98 n 58 GLY 98 A ASP 99 n 59 ASP 99 A GLU 100 n 60 GLU 100 A PHE 101 n 61 PHE 101 A GLU 102 n 62 GLU 102 A LEU 103 n 63 LEU 103 A ARG 104 n 64 ARG 104 A TYR 105 n 65 TYR 105 A ARG 106 n 66 ARG 106 A ARG 107 n 67 ARG 107 A ALA 108 n 68 ALA 108 A PHE 109 n 69 PHE 109 A SER 110 n 70 SER 110 A ASP 111 n 71 ASP 111 A LEU 112 n 72 LEU 112 A THR 113 n 73 THR 113 A SER 114 n 74 SER 114 A GLN 115 n 75 GLN 115 A LEU 116 n 76 LEU 116 A HIS 117 n 77 HIS 117 A ILE 118 n 78 ILE 118 A THR 119 n 79 THR 119 A PRO 120 n 80 PRO 120 A GLY 121 n 81 GLY 121 A THR 122 n 82 THR 122 A ALA 123 n 83 ALA 123 A TYR 124 n 84 TYR 124 A GLN 125 n 85 GLN 125 A SER 126 n 86 SER 126 A PHE 127 n 87 PHE 127 A GLU 128 n 88 GLU 128 A GLN 129 n 89 GLN 129 A VAL 130 n 90 VAL 130 A VAL 131 n 91 VAL 131 A ASN 132 n 92 ASN 132 A GLU 133 n 93 GLU 133 A LEU 134 n 94 LEU 134 A PHE 135 n 95 PHE 135 A ARG 136 n 96 ARG 136 A ASP 137 n 97 ASP 137 A GLY 138 n 98 GLY 138 A VAL 139 n 99 VAL 139 A ASN 140 n 100 ASN 140 A TRP 141 n 101 TRP 141 A GLY 142 n 102 GLY 142 A ARG 143 n 103 ARG 143 A ILE 144 n 104 ILE 144 A VAL 145 n 105 VAL 145 A ALA 146 n 106 ALA 146 A PHE 147 n 107 PHE 147 A PHE 148 n 108 PHE 148 A SER 149 n 109 SER 149 A PHE 150 n 110 PHE 150 A GLY 151 n 111 GLY 151 A GLY 152 n 112 GLY 152 A ALA 153 n 113 ALA 153 A LEU 154 n 114 LEU 154 A CYS 155 n 115 CYS 155 A VAL 156 n 116 VAL 156 A GLU 157 n 117 GLU 157 A SER 158 n 118 SER 158 A VAL 159 n 119 VAL 159 A ASP 160 n 120 ASP 160 A LYS 161 n 121 LYS 161 A GLU 162 n 122 GLU 162 A MET 163 n 123 MET 163 A GLN 164 n 124 GLN 164 A VAL 165 n 125 VAL 165 A LEU 166 n 126 LEU 166 A VAL 167 n 127 VAL 167 A SER 168 n 128 SER 168 A ARG 169 n 129 ARG 169 A ILE 170 n 130 ILE 170 A ALA 171 n 131 ALA 171 A ALA 172 n 132 ALA 172 A TRP 173 n 133 TRP 173 A MET 174 n 134 MET 174 A ALA 175 n 135 ALA 175 A THR 176 n 136 THR 176 A TYR 177 n 137 TYR 177 A LEU 178 n 138 LEU 178 A ASN 179 n 139 ASN 179 A ASP 180 n 140 ASP 180 A HIS 181 n 141 HIS 181 A LEU 182 n 142 LEU 182 A GLU 183 n 143 GLU 183 A PRO 184 n 144 PRO 184 A TRP 185 n 145 TRP 185 A ILE 186 n 146 ILE 186 A GLN 187 n 147 GLN 187 A GLU 188 n 148 GLU 188 A ASN 189 n 149 ASN 189 A GLY 190 n 150 GLY 190 A GLY 191 n 151 GLY 191 A TRP 192 n 152 TRP 192 A ASP 193 n 153 ASP 193 A THR 194 n 154 THR 194 A PHE 195 n 155 PHE 195 A VAL 196 n 156 VAL 196 A GLU 197 n 157 GLU 197 A LEU 198 n 158 LEU 198 A TYR 199 n 159 TYR 199 A GLY 200 n 160 GLY 200 A ASN 201 n 161 ASN 201 A ASN 202 n 162 ASN 202 A ALA 203 n 163 ALA 203 A ALA 204 n 164 ALA 204 A ALA 205 n 165 ALA 205 A GLU 206 n 166 GLU 206 A SER 207 n 167 SER 207 A ARG 208 n 168 ARG 208 A LYS 209 n 169 LYS 209 A GLY 210 n 170 GLY 210 A GLN 211 n 171 GLN 211 A GLU 212 n 172 GLU 212 A ARG 213 n 173 ARG 213 A LEU 214 n 174 LEU 214 A GLU 215 n 175 GLU 215 A HIS 216 n 176 HIS 216 A HIS 217 n 177 HIS 217 A HIS 218 n 178 HIS 218 A HIS 219 n 179 HIS 219 A HIS 220 n 180 HIS 220 A HIS 221 n 181 HIS 221 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A ARG 10 0.293 SIDE CHAIN 1 A ARG 38 0.316 SIDE CHAIN 1 A ARG 95 0.267 SIDE CHAIN 1 A ARG 104 0.305 SIDE CHAIN 1 A ARG 106 0.273 SIDE CHAIN 1 A ARG 107 0.280 SIDE CHAIN 1 A ARG 136 0.277 SIDE CHAIN 1 A ARG 143 0.196 SIDE CHAIN 1 A ARG 169 0.307 SIDE CHAIN 1 A ARG 208 0.309 SIDE CHAIN 1 A ARG 213 0.317 SIDE CHAIN 1 A MET 3 34.65 55.83 1 A GLN 7 -164.78 33.99 1 A ASN 9 -122.23 -52.94 1 A SER 27 66.24 -158.15 1 A TRP 28 -150.55 -45.25 1 A PHE 31 -55.81 -72.29 1 A ASP 33 62.74 -124.27 1 A VAL 34 79.54 140.82 1 A ASN 37 -54.36 -79.24 1 A ARG 38 174.13 -71.15 1 A THR 39 65.16 61.85 1 A GLU 43 61.03 -84.79 1 A THR 45 -165.08 -43.06 1 A GLU 46 32.78 39.75 1 A GLU 102 -92.42 48.61 1 A LEU 103 -150.85 -57.66 1 A TYR 105 -102.40 76.55 1 A ALA 108 -105.86 -70.82 1 A ALA 123 179.52 -77.79 1 A LYS 161 -78.20 -76.41 1 A GLU 162 -178.06 37.76 1 A ASP 180 -141.44 13.46 1 A LEU 182 -177.62 -36.74 1 A ASN 202 -142.22 54.86 1 A ARG 208 64.29 -81.35 1 A LYS 209 -58.83 -97.96 1 A GLN 211 -52.58 -89.88 1 A GLU 212 52.84 75.69 1 A ARG 213 69.52 -69.03 1 A LEU 214 -165.23 32.81 Solution structure of the anti-apoptotic protein Bcl-xL in complex with an acyl-sulfonamide-based ligand 1 N N 2 N N A ASN 9 A ASN 9 HELX_P A GLY 25 A GLY 25 1 1 17 A ALA 89 A ALA 49 HELX_P A TYR 105 A TYR 65 1 2 17 A PHE 109 A PHE 69 HELX_P A GLN 115 A GLN 75 1 3 7 A ALA 123 A ALA 83 HELX_P A PHE 135 A PHE 95 1 4 13 A ASN 140 A ASN 100 HELX_P A GLU 162 A GLU 122 1 5 23 A LEU 166 A LEU 126 HELX_P A ASP 180 A ASP 140 1 6 15 A LEU 182 A LEU 142 HELX_P A GLY 190 A GLY 150 1 7 9 A GLY 191 A GLY 151 HELX_P A LEU 198 A LEU 158 1 8 8 APOPTOSIS COMPLEX, APOPTOSIS BCLX_HUMAN UNP 1 1 Q07817 MSQSNRELVVDFLSYKLSQKGYSWSQFSDVEENRTEAPEGTESE BCLX_HUMAN UNP 1 85 Q07817 AVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVS RIAAWMATYLNDHLEPWIQENGGWDTFVELYGNNAAAESRKGQER 1 44 1YSI 5 48 Q07817 A 1 5 48 85 209 1YSI 89 213 Q07817 A 2 49 173 1 expression tag MET 1 1YSI A Q07817 UNP 1 1 expression tag SER 2 1YSI A Q07817 UNP 2 1 expression tag MET 3 1YSI A Q07817 UNP 3 1 expression tag ALA 4 1YSI A Q07817 UNP 4 1 expression tag LEU 214 1YSI A Q07817 UNP 174 1 expression tag GLU 215 1YSI A Q07817 UNP 175 1 expression tag HIS 216 1YSI A Q07817 UNP 176 1 expression tag HIS 217 1YSI A Q07817 UNP 177 1 expression tag HIS 218 1YSI A Q07817 UNP 178 1 expression tag HIS 219 1YSI A Q07817 UNP 179 1 expression tag HIS 220 1YSI A Q07817 UNP 180 1 expression tag HIS 181 1YSI A Q07817 UNP 141 BINDING SITE FOR RESIDUE N3B A 1000 A N3B 1000 Software 10 A PHE 101 A PHE 61 10 1_555 A TYR 105 A TYR 65 10 1_555 A ALA 108 A ALA 68 10 1_555 A PHE 109 A PHE 69 10 1_555 A LEU 134 A LEU 94 10 1_555 A ASN 140 A ASN 100 10 1_555 A GLY 142 A GLY 102 10 1_555 A ARG 143 A ARG 103 10 1_555 A VAL 145 A VAL 105 10 1_555 A TYR 199 A TYR 159 10 1_555 1 P 1