0.026348
0.000000
0.000000
0.000000
0.010461
0.000000
0.000000
0.000000
0.010438
0.00000
0.00000
0.00000
Miyazaki, Y.
Matsunaga, S.
Tang, J.
Maeda, Y.
Nakano, M.
Philippe, R.J.
Shibahara, M.
Liu, W.
Sato, H.
Wang, L.
Nolte, R.T.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
37.953
95.595
95.803
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C27 H19 F4 N5 O3
537.465
N-{4-[4-AMINO-6-(4-METHOXYPHENYL)FURO[2,3-D]PYRIMIDIN-5-YL]PHENYL}-N'-[2-FLUORO-5-(TRIFLUOROMETHYL)PHENYL]UREA
N-(4-{4-AMINO-6-[4-(METHYLOXY)PHENYL]FURO[2,3-D]PYRIMIDIN-5-YL}PHENYL)-N'-[2-FLUORO-5-(TRIFLUOROMETHYL)PHENYL]UREA
non-polymer
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C9 H12 N O6 P
261.168
n
O-PHOSPHOTYROSINE
PHOSPHONOTYROSINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
F
N
206
N
C
N
207
N
F
N
208
N
F
Y
209
N
C
Y
210
N
C
Y
211
N
C
Y
212
N
C
Y
213
N
C
N
214
N
F
Y
215
N
C
N
216
N
N
N
217
N
C
N
218
N
O
N
219
N
N
Y
220
N
C
Y
221
N
C
Y
222
N
C
Y
223
N
C
Y
224
N
C
Y
225
N
C
Y
226
N
C
Y
227
N
C
Y
228
N
C
Y
229
N
C
Y
230
N
C
Y
231
N
C
Y
232
N
C
Y
233
N
C
N
234
N
O
N
235
N
C
Y
236
N
O
Y
237
N
C
Y
238
N
N
Y
239
N
C
Y
240
N
C
N
241
N
N
Y
242
N
N
Y
243
N
C
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
N
N
264
S
C
N
265
N
C
N
266
N
O
N
267
N
C
N
268
N
C
N
269
N
C
N
270
N
C
N
271
N
N
N
272
N
O
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
N
N
289
S
C
N
290
N
C
N
291
N
O
N
292
N
C
N
293
N
C
N
294
N
S
N
295
N
C
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
N
N
309
S
C
N
310
N
C
N
311
N
O
N
312
N
C
Y
313
N
C
Y
314
N
C
Y
315
N
C
Y
316
N
C
Y
317
N
C
Y
318
N
C
N
319
N
O
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
N
N
332
S
C
N
333
N
C
N
334
N
O
N
335
N
C
N
336
N
C
N
337
N
C
N
338
N
O
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
O
N
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
Y
359
N
C
N
360
N
O
N
361
N
P
N
362
N
O
N
363
N
O
N
364
N
O
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
N
N
378
S
C
N
379
N
C
N
380
N
O
N
381
N
C
N
382
N
O
N
383
N
O
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
N
N
392
S
C
N
393
N
C
N
394
N
O
N
395
R
C
N
396
N
O
N
397
N
C
N
398
N
O
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
N
N
409
S
C
N
410
N
C
N
411
N
O
N
412
N
C
Y
413
N
C
Y
414
N
C
Y
415
N
C
Y
416
N
N
Y
417
N
C
Y
418
N
C
Y
419
N
C
Y
420
N
C
Y
421
N
C
N
422
N
O
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
N
N
436
S
C
N
437
N
C
N
438
N
O
N
439
N
C
Y
440
N
C
Y
441
N
C
Y
442
N
C
Y
443
N
C
Y
444
N
C
Y
445
N
C
N
446
N
O
N
447
N
O
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
N
N
460
S
C
N
461
N
C
N
462
N
O
N
463
N
C
N
464
N
C
N
465
N
C
N
466
N
O
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
Y
198
N
doub
Y
199
N
sing
Y
200
N
sing
N
201
N
sing
Y
202
N
doub
N
203
N
sing
Y
204
N
sing
N
205
N
sing
N
206
N
sing
Y
207
N
doub
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
Y
215
N
doub
Y
216
N
sing
Y
217
N
sing
N
218
N
sing
Y
219
N
doub
N
220
N
sing
Y
221
N
sing
Y
222
N
sing
Y
223
N
doub
N
224
N
sing
N
225
N
sing
Y
226
N
doub
Y
227
N
sing
Y
228
N
sing
Y
229
N
sing
Y
230
N
doub
Y
231
N
sing
Y
232
N
sing
N
233
N
sing
Y
234
N
doub
N
235
N
sing
Y
236
N
sing
N
237
N
sing
Y
238
N
doub
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
Y
245
N
sing
Y
246
N
doub
Y
247
N
sing
Y
248
N
sing
Y
249
N
doub
N
250
N
sing
Y
251
N
sing
N
252
N
sing
N
253
N
sing
Y
254
N
doub
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
doub
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
doub
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
doub
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
Y
310
N
doub
Y
311
N
sing
Y
312
N
sing
N
313
N
sing
Y
314
N
doub
N
315
N
sing
Y
316
N
doub
N
317
N
sing
Y
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
doub
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
doub
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
Y
351
N
doub
Y
352
N
sing
Y
353
N
sing
N
354
N
sing
Y
355
N
doub
N
356
N
sing
Y
357
N
doub
N
358
N
sing
Y
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
doub
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
doub
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
doub
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
doub
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
Y
408
N
doub
Y
409
N
sing
Y
410
N
sing
N
411
N
sing
Y
412
N
doub
Y
413
N
sing
Y
414
N
sing
N
415
N
sing
Y
416
N
sing
Y
417
N
doub
N
418
N
sing
Y
419
N
doub
N
420
N
sing
Y
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
doub
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
Y
436
N
doub
Y
437
N
sing
Y
438
N
sing
N
439
N
sing
Y
440
N
doub
N
441
N
sing
Y
442
N
doub
N
443
N
sing
Y
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
doub
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
UK
Bioorg.Med.Chem.Lett.
BMCLE8
1127
0960-894X
15
2203
2207
10.1016/j.bmcl.2005.03.034
15837294
Novel 4-amino-furo[2,3-d]pyrimidines as Tie-2 and VEGFR2 dual inhibitors
2005
UK
Structure
STRUE6
2005
0969-2126
7
319
330
Crystal Structure of the kinase domain of human vascular endothelial growth factor receptor 2: a key enzyme in angiogenesis
1999
10.2210/pdb1ywn/pdb
pdb_00001ywn
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
CCD
2001-05-01
MARRESEARCH
Si 111
SINGLE WAVELENGTH
M
x-ray
1
1.0
1.0
17-ID
APS
1.0
SYNCHROTRON
APS BEAMLINE 17-ID
E990V, Deletion of residues 940-989
36354.719
Vascular endothelial growth factor receptor 2
2.7.1.112
Kinase Domain
E990V, Deletion of residues 940-989
1
man
polymer
537.465
N-{4-[4-AMINO-6-(4-METHOXYPHENYL)FURO[2,3-D]PYRIMIDIN-5-YL]PHENYL}-N'-[2-FLUORO-5-(TRIFLUOROMETHYL)PHENYL]UREA
1
syn
non-polymer
18.015
water
209
nat
water
VEGFR-2, Kinase insert domain receptor, Protein-tyrosine kinase receptor Flk-1
no
yes
MDPDELPLDEHCERLPYDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSE
LKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKG
MEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDI(PTR)KDPD(PTR)VRKGDARLPLKWMAPETIFDRVYTIQSD
VWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQAN
AQQD
MDPDELPLDEHCERLPYDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSE
LKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKG
MEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLL
WEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQANAQQD
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
fall armyworm
Spodoptera
sample
KDR, FLK1
9606
Homo sapiens
SF9
7108
Spodoptera frugiperda
Baculovirus
1
2.39
48.54
VAPOR DIFFUSION, HANGING DROP
VAPOR DIFFUSION, HANGING DROP
software
database_2
struct_conn
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
pdbx_initial_refinement_model
chem_comp_atom
chem_comp_bond
repository
Initial release
Version format compliance
Advisory
Version format compliance
Refinement description
Database references
Derived calculations
Data collection
Refinement description
Data collection
1
0
2005-08-23
1
1
2008-04-30
1
2
2011-07-13
1
3
2017-10-11
1
4
2021-10-20
1
5
2023-08-23
1
6
2023-11-15
_software.classification
_software.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_chem_comp_atom.atom_id
_chem_comp_bond.atom_id_2
Vegfr2 kinase domain - unliganded structure
vegfr2 in complex with a 2-anilino-5-aryl-oxazole inhibitor
vegfr2 in complex with a 2-anilino-5-aryl-oxazole inhibitor
SEQUENCE
Deletion of residues 938-987 (corresponds to dbref 940-989)
RCSB
Y
RCSB
2005-02-18
REL
REL
LIF
N-{4-[4-AMINO-6-(4-METHOXYPHENYL)FURO[2,3-D]PYRIMIDIN-5-YL]PHENYL}-N'-[2-FLUORO-5-(TRIFLUOROMETHYL)PHENYL]UREA
HOH
water
1Y6A
pdb entry 1Y6A
PDB
experimental model
LIG
1
2
LIF
LIF
301
A
HOH
1
3
HOH
HOH
1
A
HOH
2
3
HOH
HOH
2
A
HOH
3
3
HOH
HOH
3
A
HOH
4
3
HOH
HOH
4
A
HOH
5
3
HOH
HOH
5
A
HOH
6
3
HOH
HOH
6
A
HOH
7
3
HOH
HOH
7
A
HOH
8
3
HOH
HOH
8
A
HOH
9
3
HOH
HOH
9
A
HOH
10
3
HOH
HOH
10
A
HOH
11
3
HOH
HOH
11
A
HOH
12
3
HOH
HOH
12
A
HOH
13
3
HOH
HOH
13
A
HOH
14
3
HOH
HOH
14
A
HOH
15
3
HOH
HOH
15
A
HOH
16
3
HOH
HOH
16
A
HOH
17
3
HOH
HOH
17
A
HOH
18
3
HOH
HOH
18
A
HOH
19
3
HOH
HOH
19
A
HOH
20
3
HOH
HOH
20
A
HOH
21
3
HOH
HOH
21
A
HOH
22
3
HOH
HOH
22
A
HOH
23
3
HOH
HOH
23
A
HOH
24
3
HOH
HOH
24
A
HOH
25
3
HOH
HOH
25
A
HOH
26
3
HOH
HOH
26
A
HOH
27
3
HOH
HOH
27
A
HOH
28
3
HOH
HOH
28
A
HOH
29
3
HOH
HOH
29
A
HOH
30
3
HOH
HOH
30
A
HOH
31
3
HOH
HOH
31
A
HOH
32
3
HOH
HOH
32
A
HOH
33
3
HOH
HOH
33
A
HOH
34
3
HOH
HOH
34
A
HOH
35
3
HOH
HOH
35
A
HOH
36
3
HOH
HOH
36
A
HOH
37
3
HOH
HOH
37
A
HOH
38
3
HOH
HOH
38
A
HOH
39
3
HOH
HOH
39
A
HOH
40
3
HOH
HOH
40
A
HOH
41
3
HOH
HOH
41
A
HOH
42
3
HOH
HOH
42
A
HOH
43
3
HOH
HOH
43
A
HOH
44
3
HOH
HOH
44
A
HOH
45
3
HOH
HOH
45
A
HOH
46
3
HOH
HOH
46
A
HOH
47
3
HOH
HOH
47
A
HOH
48
3
HOH
HOH
48
A
HOH
49
3
HOH
HOH
49
A
HOH
50
3
HOH
HOH
50
A
HOH
51
3
HOH
HOH
51
A
HOH
52
3
HOH
HOH
52
A
HOH
53
3
HOH
HOH
53
A
HOH
54
3
HOH
HOH
54
A
HOH
55
3
HOH
HOH
55
A
HOH
56
3
HOH
HOH
56
A
HOH
57
3
HOH
HOH
57
A
HOH
58
3
HOH
HOH
58
A
HOH
59
3
HOH
HOH
59
A
HOH
60
3
HOH
HOH
60
A
HOH
61
3
HOH
HOH
61
A
HOH
62
3
HOH
HOH
62
A
HOH
63
3
HOH
HOH
63
A
HOH
64
3
HOH
HOH
64
A
HOH
65
3
HOH
HOH
65
A
HOH
66
3
HOH
HOH
66
A
HOH
67
3
HOH
HOH
67
A
HOH
68
3
HOH
HOH
68
A
HOH
69
3
HOH
HOH
69
A
HOH
70
3
HOH
HOH
70
A
HOH
71
3
HOH
HOH
71
A
HOH
72
3
HOH
HOH
72
A
HOH
73
3
HOH
HOH
73
A
HOH
74
3
HOH
HOH
74
A
HOH
75
3
HOH
HOH
75
A
HOH
76
3
HOH
HOH
76
A
HOH
77
3
HOH
HOH
77
A
HOH
78
3
HOH
HOH
78
A
HOH
79
3
HOH
HOH
79
A
HOH
80
3
HOH
HOH
80
A
HOH
81
3
HOH
HOH
81
A
HOH
82
3
HOH
HOH
82
A
HOH
83
3
HOH
HOH
83
A
HOH
84
3
HOH
HOH
84
A
HOH
85
3
HOH
HOH
85
A
HOH
86
3
HOH
HOH
86
A
HOH
87
3
HOH
HOH
87
A
HOH
88
3
HOH
HOH
88
A
HOH
89
3
HOH
HOH
89
A
HOH
90
3
HOH
HOH
90
A
HOH
91
3
HOH
HOH
91
A
HOH
92
3
HOH
HOH
92
A
HOH
93
3
HOH
HOH
93
A
HOH
94
3
HOH
HOH
94
A
HOH
95
3
HOH
HOH
95
A
HOH
96
3
HOH
HOH
96
A
HOH
97
3
HOH
HOH
97
A
HOH
98
3
HOH
HOH
98
A
HOH
99
3
HOH
HOH
99
A
HOH
100
3
HOH
HOH
100
A
HOH
101
3
HOH
HOH
101
A
HOH
102
3
HOH
HOH
102
A
HOH
103
3
HOH
HOH
103
A
HOH
104
3
HOH
HOH
104
A
HOH
105
3
HOH
HOH
105
A
HOH
106
3
HOH
HOH
106
A
HOH
107
3
HOH
HOH
107
A
HOH
108
3
HOH
HOH
108
A
HOH
109
3
HOH
HOH
109
A
HOH
110
3
HOH
HOH
110
A
HOH
111
3
HOH
HOH
111
A
HOH
112
3
HOH
HOH
112
A
HOH
113
3
HOH
HOH
113
A
HOH
114
3
HOH
HOH
114
A
HOH
115
3
HOH
HOH
115
A
HOH
116
3
HOH
HOH
116
A
HOH
117
3
HOH
HOH
117
A
HOH
118
3
HOH
HOH
118
A
HOH
119
3
HOH
HOH
119
A
HOH
120
3
HOH
HOH
120
A
HOH
121
3
HOH
HOH
121
A
HOH
122
3
HOH
HOH
122
A
HOH
123
3
HOH
HOH
123
A
HOH
124
3
HOH
HOH
124
A
HOH
125
3
HOH
HOH
125
A
HOH
126
3
HOH
HOH
126
A
HOH
127
3
HOH
HOH
127
A
HOH
128
3
HOH
HOH
128
A
HOH
129
3
HOH
HOH
129
A
HOH
130
3
HOH
HOH
130
A
HOH
131
3
HOH
HOH
131
A
HOH
132
3
HOH
HOH
132
A
HOH
133
3
HOH
HOH
133
A
HOH
134
3
HOH
HOH
134
A
HOH
135
3
HOH
HOH
135
A
HOH
136
3
HOH
HOH
136
A
HOH
137
3
HOH
HOH
137
A
HOH
138
3
HOH
HOH
138
A
HOH
139
3
HOH
HOH
139
A
HOH
140
3
HOH
HOH
140
A
HOH
141
3
HOH
HOH
141
A
HOH
142
3
HOH
HOH
142
A
HOH
143
3
HOH
HOH
143
A
HOH
144
3
HOH
HOH
144
A
HOH
145
3
HOH
HOH
145
A
HOH
146
3
HOH
HOH
146
A
HOH
147
3
HOH
HOH
147
A
HOH
148
3
HOH
HOH
148
A
HOH
149
3
HOH
HOH
149
A
HOH
150
3
HOH
HOH
150
A
HOH
151
3
HOH
HOH
151
A
HOH
152
3
HOH
HOH
152
A
HOH
153
3
HOH
HOH
153
A
HOH
154
3
HOH
HOH
154
A
HOH
155
3
HOH
HOH
155
A
HOH
156
3
HOH
HOH
156
A
HOH
157
3
HOH
HOH
157
A
HOH
158
3
HOH
HOH
158
A
HOH
159
3
HOH
HOH
159
A
HOH
160
3
HOH
HOH
160
A
HOH
161
3
HOH
HOH
161
A
HOH
162
3
HOH
HOH
162
A
HOH
163
3
HOH
HOH
163
A
HOH
164
3
HOH
HOH
164
A
HOH
165
3
HOH
HOH
165
A
HOH
166
3
HOH
HOH
166
A
HOH
167
3
HOH
HOH
167
A
HOH
168
3
HOH
HOH
168
A
HOH
169
3
HOH
HOH
169
A
HOH
170
3
HOH
HOH
170
A
HOH
171
3
HOH
HOH
171
A
HOH
172
3
HOH
HOH
172
A
HOH
173
3
HOH
HOH
173
A
HOH
174
3
HOH
HOH
174
A
HOH
175
3
HOH
HOH
175
A
HOH
176
3
HOH
HOH
176
A
HOH
177
3
HOH
HOH
177
A
HOH
178
3
HOH
HOH
178
A
HOH
179
3
HOH
HOH
179
A
HOH
180
3
HOH
HOH
180
A
HOH
181
3
HOH
HOH
181
A
HOH
182
3
HOH
HOH
182
A
HOH
183
3
HOH
HOH
183
A
HOH
184
3
HOH
HOH
184
A
HOH
185
3
HOH
HOH
185
A
HOH
186
3
HOH
HOH
186
A
HOH
187
3
HOH
HOH
187
A
HOH
188
3
HOH
HOH
188
A
HOH
189
3
HOH
HOH
189
A
HOH
190
3
HOH
HOH
190
A
HOH
191
3
HOH
HOH
191
A
HOH
192
3
HOH
HOH
192
A
HOH
193
3
HOH
HOH
193
A
HOH
194
3
HOH
HOH
194
A
HOH
195
3
HOH
HOH
195
A
HOH
196
3
HOH
HOH
196
A
HOH
197
3
HOH
HOH
197
A
HOH
198
3
HOH
HOH
198
A
HOH
199
3
HOH
HOH
199
A
HOH
200
3
HOH
HOH
200
A
HOH
201
3
HOH
HOH
201
A
HOH
202
3
HOH
HOH
202
A
HOH
203
3
HOH
HOH
203
A
HOH
204
3
HOH
HOH
204
A
HOH
205
3
HOH
HOH
205
A
HOH
206
3
HOH
HOH
206
A
HOH
207
3
HOH
HOH
207
A
HOH
208
3
HOH
HOH
208
A
HOH
209
3
HOH
HOH
209
A
n
1
804
A
n
2
805
A
n
3
806
A
n
4
807
A
n
5
808
A
n
6
809
A
n
7
810
A
n
8
811
A
n
9
812
A
n
10
813
A
n
11
814
A
n
12
815
A
n
13
816
A
n
14
817
A
LEU
818
n
15
LEU
818
A
PRO
819
n
16
PRO
819
A
TYR
820
n
17
TYR
820
A
ASP
821
n
18
ASP
821
A
ALA
822
n
19
ALA
822
A
SER
823
n
20
SER
823
A
LYS
824
n
21
LYS
824
A
TRP
825
n
22
TRP
825
A
GLU
826
n
23
GLU
826
A
PHE
827
n
24
PHE
827
A
PRO
828
n
25
PRO
828
A
ARG
829
n
26
ARG
829
A
ASP
830
n
27
ASP
830
A
ARG
831
n
28
ARG
831
A
LEU
832
n
29
LEU
832
A
LYS
833
n
30
LYS
833
A
LEU
834
n
31
LEU
834
A
GLY
835
n
32
GLY
835
A
LYS
836
n
33
LYS
836
A
PRO
837
n
34
PRO
837
A
LEU
838
n
35
LEU
838
A
GLY
839
n
36
GLY
839
A
ARG
840
n
37
ARG
840
A
GLY
841
n
38
GLY
841
A
ALA
842
n
39
ALA
842
A
PHE
843
n
40
PHE
843
A
GLY
844
n
41
GLY
844
A
GLN
845
n
42
GLN
845
A
VAL
846
n
43
VAL
846
A
ILE
847
n
44
ILE
847
A
GLU
848
n
45
GLU
848
A
ALA
849
n
46
ALA
849
A
ASP
850
n
47
ASP
850
A
ALA
851
n
48
ALA
851
A
PHE
852
n
49
PHE
852
A
GLY
853
n
50
GLY
853
A
ILE
854
n
51
ILE
854
A
ASP
855
n
52
ASP
855
A
LYS
856
n
53
LYS
856
A
THR
857
n
54
THR
857
A
ALA
858
n
55
ALA
858
A
THR
859
n
56
THR
859
A
CYS
860
n
57
CYS
860
A
ARG
861
n
58
ARG
861
A
THR
862
n
59
THR
862
A
VAL
863
n
60
VAL
863
A
ALA
864
n
61
ALA
864
A
VAL
865
n
62
VAL
865
A
LYS
866
n
63
LYS
866
A
MET
867
n
64
MET
867
A
LEU
868
n
65
LEU
868
A
n
66
869
A
n
67
870
A
n
68
871
A
n
69
872
A
THR
873
n
70
THR
873
A
HIS
874
n
71
HIS
874
A
SER
875
n
72
SER
875
A
GLU
876
n
73
GLU
876
A
HIS
877
n
74
HIS
877
A
ARG
878
n
75
ARG
878
A
ALA
879
n
76
ALA
879
A
LEU
880
n
77
LEU
880
A
MET
881
n
78
MET
881
A
SER
882
n
79
SER
882
A
GLU
883
n
80
GLU
883
A
LEU
884
n
81
LEU
884
A
LYS
885
n
82
LYS
885
A
ILE
886
n
83
ILE
886
A
LEU
887
n
84
LEU
887
A
ILE
888
n
85
ILE
888
A
HIS
889
n
86
HIS
889
A
ILE
890
n
87
ILE
890
A
GLY
891
n
88
GLY
891
A
HIS
892
n
89
HIS
892
A
HIS
893
n
90
HIS
893
A
LEU
894
n
91
LEU
894
A
ASN
895
n
92
ASN
895
A
VAL
896
n
93
VAL
896
A
VAL
897
n
94
VAL
897
A
ASN
898
n
95
ASN
898
A
LEU
899
n
96
LEU
899
A
LEU
900
n
97
LEU
900
A
GLY
901
n
98
GLY
901
A
ALA
902
n
99
ALA
902
A
CYS
903
n
100
CYS
903
A
THR
904
n
101
THR
904
A
LYS
905
n
102
LYS
905
A
PRO
906
n
103
PRO
906
A
GLY
907
n
104
GLY
907
A
GLY
908
n
105
GLY
908
A
PRO
909
n
106
PRO
909
A
LEU
910
n
107
LEU
910
A
MET
911
n
108
MET
911
A
VAL
912
n
109
VAL
912
A
ILE
913
n
110
ILE
913
A
VAL
914
n
111
VAL
914
A
GLU
915
n
112
GLU
915
A
PHE
916
n
113
PHE
916
A
CYS
917
n
114
CYS
917
A
LYS
918
n
115
LYS
918
A
PHE
919
n
116
PHE
919
A
GLY
920
n
117
GLY
920
A
ASN
921
n
118
ASN
921
A
LEU
922
n
119
LEU
922
A
SER
923
n
120
SER
923
A
THR
924
n
121
THR
924
A
TYR
925
n
122
TYR
925
A
LEU
926
n
123
LEU
926
A
ARG
927
n
124
ARG
927
A
SER
928
n
125
SER
928
A
LYS
929
n
126
LYS
929
A
ARG
930
n
127
ARG
930
A
ASN
931
n
128
ASN
931
A
GLU
932
n
129
GLU
932
A
PHE
933
n
130
PHE
933
A
VAL
934
n
131
VAL
934
A
PRO
935
n
132
PRO
935
A
n
133
936
A
n
134
937
A
n
135
988
A
n
136
989
A
n
137
990
A
n
138
991
A
n
139
992
A
n
140
993
A
n
141
994
A
n
142
995
A
n
143
996
A
PHE
997
n
144
PHE
997
A
LEU
998
n
145
LEU
998
A
THR
999
n
146
THR
999
A
LEU
1000
n
147
LEU
1000
A
GLU
1001
n
148
GLU
1001
A
HIS
1002
n
149
HIS
1002
A
LEU
1003
n
150
LEU
1003
A
ILE
1004
n
151
ILE
1004
A
CYS
1005
n
152
CYS
1005
A
TYR
1006
n
153
TYR
1006
A
SER
1007
n
154
SER
1007
A
PHE
1008
n
155
PHE
1008
A
GLN
1009
n
156
GLN
1009
A
VAL
1010
n
157
VAL
1010
A
ALA
1011
n
158
ALA
1011
A
LYS
1012
n
159
LYS
1012
A
GLY
1013
n
160
GLY
1013
A
MET
1014
n
161
MET
1014
A
GLU
1015
n
162
GLU
1015
A
PHE
1016
n
163
PHE
1016
A
LEU
1017
n
164
LEU
1017
A
ALA
1018
n
165
ALA
1018
A
SER
1019
n
166
SER
1019
A
ARG
1020
n
167
ARG
1020
A
LYS
1021
n
168
LYS
1021
A
CYS
1022
n
169
CYS
1022
A
ILE
1023
n
170
ILE
1023
A
HIS
1024
n
171
HIS
1024
A
ARG
1025
n
172
ARG
1025
A
ASP
1026
n
173
ASP
1026
A
LEU
1027
n
174
LEU
1027
A
ALA
1028
n
175
ALA
1028
A
ALA
1029
n
176
ALA
1029
A
ARG
1030
n
177
ARG
1030
A
ASN
1031
n
178
ASN
1031
A
ILE
1032
n
179
ILE
1032
A
LEU
1033
n
180
LEU
1033
A
LEU
1034
n
181
LEU
1034
A
SER
1035
n
182
SER
1035
A
GLU
1036
n
183
GLU
1036
A
LYS
1037
n
184
LYS
1037
A
ASN
1038
n
185
ASN
1038
A
VAL
1039
n
186
VAL
1039
A
VAL
1040
n
187
VAL
1040
A
LYS
1041
n
188
LYS
1041
A
ILE
1042
n
189
ILE
1042
A
CYS
1043
n
190
CYS
1043
A
ASP
1044
n
191
ASP
1044
A
n
192
1045
A
n
193
1046
A
n
194
1047
A
n
195
1048
A
n
196
1049
A
n
197
1050
A
ILE
1051
n
198
ILE
1051
A
PTR
1052
n
199
PTR
1052
A
LYS
1053
n
200
LYS
1053
A
ASP
1054
n
201
ASP
1054
A
PRO
1055
n
202
PRO
1055
A
ASP
1056
n
203
ASP
1056
A
PTR
1057
n
204
PTR
1057
A
VAL
1058
n
205
VAL
1058
A
ARG
1059
n
206
ARG
1059
A
LYS
1060
n
207
LYS
1060
A
GLY
1061
n
208
GLY
1061
A
ASP
1062
n
209
ASP
1062
A
ALA
1063
n
210
ALA
1063
A
ARG
1064
n
211
ARG
1064
A
LEU
1065
n
212
LEU
1065
A
PRO
1066
n
213
PRO
1066
A
LEU
1067
n
214
LEU
1067
A
LYS
1068
n
215
LYS
1068
A
TRP
1069
n
216
TRP
1069
A
MET
1070
n
217
MET
1070
A
ALA
1071
n
218
ALA
1071
A
PRO
1072
n
219
PRO
1072
A
GLU
1073
n
220
GLU
1073
A
THR
1074
n
221
THR
1074
A
ILE
1075
n
222
ILE
1075
A
PHE
1076
n
223
PHE
1076
A
ASP
1077
n
224
ASP
1077
A
ARG
1078
n
225
ARG
1078
A
VAL
1079
n
226
VAL
1079
A
TYR
1080
n
227
TYR
1080
A
THR
1081
n
228
THR
1081
A
ILE
1082
n
229
ILE
1082
A
GLN
1083
n
230
GLN
1083
A
SER
1084
n
231
SER
1084
A
ASP
1085
n
232
ASP
1085
A
VAL
1086
n
233
VAL
1086
A
TRP
1087
n
234
TRP
1087
A
SER
1088
n
235
SER
1088
A
PHE
1089
n
236
PHE
1089
A
GLY
1090
n
237
GLY
1090
A
VAL
1091
n
238
VAL
1091
A
LEU
1092
n
239
LEU
1092
A
LEU
1093
n
240
LEU
1093
A
TRP
1094
n
241
TRP
1094
A
GLU
1095
n
242
GLU
1095
A
ILE
1096
n
243
ILE
1096
A
PHE
1097
n
244
PHE
1097
A
SER
1098
n
245
SER
1098
A
LEU
1099
n
246
LEU
1099
A
GLY
1100
n
247
GLY
1100
A
ALA
1101
n
248
ALA
1101
A
SER
1102
n
249
SER
1102
A
PRO
1103
n
250
PRO
1103
A
TYR
1104
n
251
TYR
1104
A
PRO
1105
n
252
PRO
1105
A
GLY
1106
n
253
GLY
1106
A
VAL
1107
n
254
VAL
1107
A
LYS
1108
n
255
LYS
1108
A
ILE
1109
n
256
ILE
1109
A
ASP
1110
n
257
ASP
1110
A
GLU
1111
n
258
GLU
1111
A
GLU
1112
n
259
GLU
1112
A
PHE
1113
n
260
PHE
1113
A
CYS
1114
n
261
CYS
1114
A
ARG
1115
n
262
ARG
1115
A
ARG
1116
n
263
ARG
1116
A
LEU
1117
n
264
LEU
1117
A
LYS
1118
n
265
LYS
1118
A
GLU
1119
n
266
GLU
1119
A
GLY
1120
n
267
GLY
1120
A
THR
1121
n
268
THR
1121
A
ARG
1122
n
269
ARG
1122
A
MET
1123
n
270
MET
1123
A
ARG
1124
n
271
ARG
1124
A
ALA
1125
n
272
ALA
1125
A
PRO
1126
n
273
PRO
1126
A
ASP
1127
n
274
ASP
1127
A
TYR
1128
n
275
TYR
1128
A
THR
1129
n
276
THR
1129
A
THR
1130
n
277
THR
1130
A
PRO
1131
n
278
PRO
1131
A
GLU
1132
n
279
GLU
1132
A
MET
1133
n
280
MET
1133
A
TYR
1134
n
281
TYR
1134
A
GLN
1135
n
282
GLN
1135
A
THR
1136
n
283
THR
1136
A
MET
1137
n
284
MET
1137
A
LEU
1138
n
285
LEU
1138
A
ASP
1139
n
286
ASP
1139
A
CYS
1140
n
287
CYS
1140
A
TRP
1141
n
288
TRP
1141
A
HIS
1142
n
289
HIS
1142
A
GLY
1143
n
290
GLY
1143
A
GLU
1144
n
291
GLU
1144
A
PRO
1145
n
292
PRO
1145
A
SER
1146
n
293
SER
1146
A
GLN
1147
n
294
GLN
1147
A
ARG
1148
n
295
ARG
1148
A
PRO
1149
n
296
PRO
1149
A
THR
1150
n
297
THR
1150
A
PHE
1151
n
298
PHE
1151
A
SER
1152
n
299
SER
1152
A
GLU
1153
n
300
GLU
1153
A
LEU
1154
n
301
LEU
1154
A
VAL
1155
n
302
VAL
1155
A
GLU
1156
n
303
GLU
1156
A
HIS
1157
n
304
HIS
1157
A
LEU
1158
n
305
LEU
1158
A
GLY
1159
n
306
GLY
1159
A
ASN
1160
n
307
ASN
1160
A
LEU
1161
n
308
LEU
1161
A
LEU
1162
n
309
LEU
1162
A
GLN
1163
n
310
GLN
1163
A
ALA
1164
n
311
ALA
1164
A
ASN
1165
n
312
ASN
1165
A
ALA
1166
n
313
ALA
1166
A
GLN
1167
n
314
GLN
1167
A
GLN
1168
n
315
GLN
1168
A
ASP
1169
n
316
ASP
1169
A
1.9558
0.1241
-0.5716
2.4370
0.4925
2.9376
0.0214
0.0724
0.0571
-0.0612
0.0050
0.2199
-0.0261
-0.0804
-0.0265
-0.1108
-0.0011
0.0002
-0.0080
-0.0120
-0.0747
refined
2.1180
34.2230
6.1800
X-RAY DIFFRACTION
1.7237
0.2735
0.5084
1.6632
0.9058
2.6364
-0.0551
-0.0696
-0.0434
0.0610
-0.0367
0.0696
0.0962
-0.2470
0.0918
-0.1049
-0.0155
0.0056
0.0431
-0.0367
-0.1020
refined
7.6840
41.4310
32.3890
X-RAY DIFFRACTION
A
818
A
15
A
920
A
117
X-RAY DIFFRACTION
1
A
921
A
118
A
1169
A
316
X-RAY DIFFRACTION
2
author_defined_assembly
1
monomeric
A
PTR
1052
O-PHOSPHOTYROSINE
A
PTR
199
TYR
A
PTR
1057
O-PHOSPHOTYROSINE
A
PTR
204
TYR
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLY
839
A
N
GLY
36
A
O
VAL
846
A
O
VAL
43
A
N
ALA
851
A
N
ALA
48
A
O
ARG
861
A
O
ARG
58
A
N
LYS
866
A
N
LYS
63
A
O
VAL
912
A
O
VAL
109
A
O
ILE
913
A
O
ILE
110
A
N
LEU
900
A
N
LEU
97
A
N
LEU
1033
A
N
LEU
180
A
O
LYS
1041
A
O
LYS
188
1
A
MET
804
A
MET
1
1
Y
1
A
ASP
805
A
ASP
2
1
Y
1
A
PRO
806
A
PRO
3
1
Y
1
A
ASP
807
A
ASP
4
1
Y
1
A
GLU
808
A
GLU
5
1
Y
1
A
LEU
809
A
LEU
6
1
Y
1
A
PRO
810
A
PRO
7
1
Y
1
A
LEU
811
A
LEU
8
1
Y
1
A
ASP
812
A
ASP
9
1
Y
1
A
GLU
813
A
GLU
10
1
Y
1
A
HIS
814
A
HIS
11
1
Y
1
A
CYS
815
A
CYS
12
1
Y
1
A
GLU
816
A
GLU
13
1
Y
1
A
ARG
817
A
ARG
14
1
Y
1
A
LYS
869
A
LYS
66
1
Y
1
A
GLU
870
A
GLU
67
1
Y
1
A
GLY
871
A
GLY
68
1
Y
1
A
ALA
872
A
ALA
69
1
Y
1
A
TYR
936
A
TYR
133
1
Y
1
A
LYS
937
A
LYS
134
1
Y
1
A
VAL
988
A
VAL
135
1
Y
1
A
ALA
989
A
ALA
136
1
Y
1
A
PRO
990
A
PRO
137
1
Y
1
A
GLU
991
A
GLU
138
1
Y
1
A
ASP
992
A
ASP
139
1
Y
1
A
LEU
993
A
LEU
140
1
Y
1
A
TYR
994
A
TYR
141
1
Y
1
A
LYS
995
A
LYS
142
1
Y
1
A
ASP
996
A
ASP
143
1
Y
1
A
PHE
1045
A
PHE
192
1
Y
1
A
GLY
1046
A
GLY
193
1
Y
1
A
LEU
1047
A
LEU
194
1
Y
1
A
ALA
1048
A
ALA
195
1
Y
1
A
ARG
1049
A
ARG
196
1
Y
1
A
ASP
1050
A
ASP
197
1
Y
1
A
A
SG
O
CYS
HOH
1005
202
2.13
1
A
A
O
O
PRO
HOH
819
193
2.19
1
A
LYS
856
75.28
-9.26
1
A
ALA
858
-83.07
49.41
1
A
ARG
1025
82.87
-17.60
1
A
ASP
1026
-146.56
59.51
1
A
SER
1035
-108.28
-168.18
1
A
ARG
1078
34.33
38.47
32.124
0.12
0.00
0.00
1.12
0.00
-1.24
0.953
0.944
0.23005
0.20488
0.20564
1.71
47.89
1139
35577
3.1
95.19
4.206
0.071
RANDOM
LIKELY RESIDUAL
1
THROUGHOUT
-3
MOLECULAR REPLACEMENT
0.113
0.107
0.80
0.80
1.20
pdb entry 1Y6A
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
1.71
47.89
209
2512
39
0
2264
0.012
0.022
2360
0.002
0.020
2148
1.485
1.991
3195
0.823
3.000
4983
5.922
5.000
277
32.683
22.981
104
12.752
15.000
409
16.288
15.000
18
0.085
0.200
342
0.006
0.020
2570
0.005
0.020
506
0.219
0.200
477
0.188
0.200
2072
0.188
0.200
1165
0.086
0.200
1208
0.210
0.200
136
0.229
0.200
13
0.205
0.200
61
0.168
0.200
23
1.213
1.500
1805
0.218
1.500
567
1.365
2.000
2255
2.214
3.000
1152
3.067
4.500
940
0.259
0.227
1.754
63
2005
20
73.88
25.2
1.70
50.0
1YWN
37357
-3.0
-3.0
0.047
1
31.38
6.43
94.7
0.383
1.70
1.76
2.63
2767
1
4.3
71.8
refinement
REFMAC
5.2.0005
data collection
MAR345
data scaling
SCALEPACK
phasing
AMoRE
Vegfr2 in complex with a novel 4-amino-furo[2,3-d]pyrimidine
1
N
N
2
N
N
3
N
N
A
ASP
821
A
ASP
18
HELX_P
A
GLU
826
A
GLU
23
1
1
6
A
PRO
828
A
PRO
25
HELX_P
A
ASP
830
A
ASP
27
5
2
3
A
THR
873
A
THR
70
HELX_P
A
GLY
891
A
GLY
88
1
3
19
A
ASN
921
A
ASN
118
HELX_P
A
LYS
929
A
LYS
126
1
4
9
A
ARG
930
A
ARG
127
HELX_P
A
PHE
933
A
PHE
130
5
5
4
A
THR
999
A
THR
146
HELX_P
A
ARG
1020
A
ARG
167
1
6
22
A
ALA
1028
A
ALA
175
HELX_P
A
ARG
1030
A
ARG
177
5
7
3
A
GLU
1036
A
GLU
183
HELX_P
A
ASN
1038
A
ASN
185
5
8
3
A
LEU
1065
A
LEU
212
HELX_P
A
MET
1070
A
MET
217
5
9
6
A
ALA
1071
A
ALA
218
HELX_P
A
ARG
1078
A
ARG
225
1
10
8
A
THR
1081
A
THR
228
HELX_P
A
SER
1098
A
SER
245
1
11
18
A
ASP
1110
A
ASP
257
HELX_P
A
GLY
1120
A
GLY
267
1
12
11
A
THR
1130
A
THR
277
HELX_P
A
TRP
1141
A
TRP
288
1
13
12
A
GLU
1144
A
GLU
291
HELX_P
A
ARG
1148
A
ARG
295
5
14
5
A
THR
1150
A
THR
297
HELX_P
A
ALA
1166
A
ALA
313
1
15
17
covale
1.338
both
A
ILE
1051
A
C
ILE
198
1_555
A
PTR
1052
A
N
PTR
199
1_555
covale
1.334
both
A
PTR
1052
A
C
PTR
199
1_555
A
LYS
1053
A
N
LYS
200
1_555
covale
1.330
both
A
ASP
1056
A
C
ASP
203
1_555
A
PTR
1057
A
N
PTR
204
1_555
covale
1.331
both
A
PTR
1057
A
C
PTR
204
1_555
A
VAL
1058
A
N
VAL
205
1_555
TRANSFERASE
TRANSFERASE
VGFR2_HUMAN
UNP
1
806
P35968
MDPDELPLDEHCERLPYDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSE
LKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDS
ITSSQSSASSGFVEEKSLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKIC
DFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRM
RAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQANAQQD
806
1171
1YWN
804
1169
P35968
A
1
1
316
1
GLU
engineered mutation
VAL
988
1YWN
A
P35968
UNP
990
135
1
TYR
modified residue
PTR
1052
1YWN
A
P35968
UNP
1054
199
1
TYR
modified residue
PTR
1057
1YWN
A
P35968
UNP
1059
204
5
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
LEU
832
A
LEU
29
A
ARG
840
A
ARG
37
A
GLN
845
A
GLN
42
A
PHE
852
A
PHE
49
A
CYS
860
A
CYS
57
A
MET
867
A
MET
64
A
MET
911
A
MET
108
A
GLU
915
A
GLU
112
A
LEU
899
A
LEU
96
A
CYS
903
A
CYS
100
A
ILE
1032
A
ILE
179
A
LEU
1034
A
LEU
181
A
VAL
1040
A
VAL
187
A
ILE
1042
A
ILE
189
BINDING SITE FOR RESIDUE LIF A 301
A
LIF
301
Software
18
A
HOH
127
C
HOH
18
1_555
A
LEU
838
A
LEU
35
18
1_555
A
GLY
839
A
GLY
36
18
1_555
A
ARG
840
A
ARG
37
18
1_555
A
GLY
841
A
GLY
38
18
1_555
A
VAL
846
A
VAL
43
18
1_555
A
ALA
864
A
ALA
61
18
1_555
A
GLU
883
A
GLU
80
18
1_555
A
VAL
896
A
VAL
93
18
1_555
A
VAL
897
A
VAL
94
18
1_555
A
GLU
915
A
GLU
112
18
1_555
A
PHE
916
A
PHE
113
18
1_555
A
CYS
917
A
CYS
114
18
1_555
A
LEU
1017
A
LEU
164
18
1_555
A
HIS
1024
A
HIS
171
18
1_555
A
ILE
1042
A
ILE
189
18
1_555
A
CYS
1043
A
CYS
190
18
1_555
A
ASP
1044
A
ASP
191
18
1_555
19
P 21 21 21