0.010069 0.005813 0.000000 0.000000 0.011627 0.000000 0.000000 0.000000 0.012413 0.00000 0.00000 0.00000 Kumar, A. Mandiyan, V. Suzuki, Y. Zhang, C. Rice, J. Tsai, J. Artis, D.R. Ibrahim, P. Bremer, R. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 99.315 99.315 80.561 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C3 H5 N2 1 69.085 IMIDAZOLE non-polymer C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H Y 183 N N Y 184 N C Y 185 N N Y 186 N C Y 187 N C N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N N N 194 S C N 195 N C N 196 N O N 197 N C N 198 N C N 199 N C N 200 N C N 201 N O N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N N N 216 S C N 217 N C N 218 N O N 219 N C N 220 N C N 221 N C N 222 N C N 223 N N N 224 N O N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N N N 241 S C N 242 N C N 243 N O N 244 N C N 245 N C N 246 N S N 247 N C N 248 N O N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N N N 261 S C N 262 N C N 263 N O N 264 N C Y 265 N C Y 266 N C Y 267 N C Y 268 N C Y 269 N C Y 270 N C N 271 N O N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N N N 284 S C N 285 N C N 286 N O N 287 N C N 288 N C N 289 N C N 290 N O N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N N N 301 S C N 302 N C N 303 N O N 304 N C N 305 N O N 306 N O N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N N N 315 S C N 316 N C N 317 N O N 318 R C N 319 N O N 320 N C N 321 N O N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N N N 332 S C N 333 N C N 334 N O N 335 N C Y 336 N C Y 337 N C Y 338 N C Y 339 N N Y 340 N C Y 341 N C Y 342 N C Y 343 N C Y 344 N C N 345 N O N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N N N 359 S C N 360 N C N 361 N O N 362 N C Y 363 N C Y 364 N C Y 365 N C Y 366 N C Y 367 N C Y 368 N C N 369 N O N 370 N O N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N N N 383 S C N 384 N C N 385 N O N 386 N C N 387 N C N 388 N C N 389 N O N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing Y 173 N sing Y 174 N sing N 175 N sing Y 176 N doub N 177 N sing Y 178 N sing N 179 N sing Y 180 N doub N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N doub N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N doub N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N doub N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N doub N 254 N sing N 255 N sing N 256 N sing N 257 N sing Y 258 N doub Y 259 N sing Y 260 N sing N 261 N sing Y 262 N doub N 263 N sing Y 264 N doub N 265 N sing Y 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N doub N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N doub N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N doub N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N doub N 323 N sing N 324 N sing N 325 N sing N 326 N sing Y 327 N doub Y 328 N sing Y 329 N sing N 330 N sing Y 331 N doub Y 332 N sing Y 333 N sing N 334 N sing Y 335 N sing Y 336 N doub N 337 N sing Y 338 N doub N 339 N sing Y 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N doub N 351 N sing N 352 N sing N 353 N sing N 354 N sing Y 355 N doub Y 356 N sing Y 357 N sing N 358 N sing Y 359 N doub N 360 N sing Y 361 N doub N 362 N sing Y 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N doub N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing UK J.Mol.Biol. JMOBAK 0070 0022-2836 348 183 193 10.1016/j.jmb.2005.02.039 15808862 Crystal structures of proto-oncogene kinase Pim1: a target of aberrant somatic hypermutations in diffuse large cell lymphoma. 2005 10.2210/pdb1yxs/pdb pdb_00001yxs 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2002-07-09 ADSC QUANTUM 4 SINGLE WAVELENGTH M x-ray 1 1.0 8.3.1 ALS SYNCHROTRON ALS BEAMLINE 8.3.1 33866.402 Proto-oncogene serine/threonine-protein kinase Pim-1 2.7.1.37 catalytic domain P123M 1 man polymer 69.085 IMIDAZOLE 1 syn non-polymer 18.015 water 174 nat water no no KEKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLD WFERPDSFVLILERMEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFG SGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLIR WCLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLHSLSPGPSKVDHHHHHH KEKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLD WFERPDSFVLILERMEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFG SGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLIR WCLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLHSLSPGPSKVDHHHHHH A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia sample PIM1 9606 Homo sapiens 562 Escherichia coli 1 3.8 67 VAPOR DIFFUSION, SITTING DROP 6.5 Na Acetate, Imidazole, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K 277 database_2 struct_ref_seq_dif struct_site chem_comp_atom chem_comp_bond pdbx_initial_refinement_model repository Initial release Version format compliance Advisory Version format compliance Data collection Database references Derived calculations Data collection Refinement description 1 0 2005-04-26 1 1 2008-04-30 1 2 2011-07-13 1 3 2015-06-24 1 4 2021-10-20 1 5 2024-02-14 1 6 2024-04-03 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2005-02-22 REL REL IMD IMIDAZOLE HOH water 1YWV APO Structure PDB experimental model IMD 1 2 IMD IMD 1001 A HOH 1 3 HOH HOH 1002 A HOH 2 3 HOH HOH 1003 A HOH 3 3 HOH HOH 1004 A HOH 4 3 HOH HOH 1005 A HOH 5 3 HOH HOH 1006 A HOH 6 3 HOH HOH 1007 A HOH 7 3 HOH HOH 1008 A HOH 8 3 HOH HOH 1009 A HOH 9 3 HOH HOH 1010 A HOH 10 3 HOH HOH 1011 A HOH 11 3 HOH HOH 1012 A HOH 12 3 HOH HOH 1013 A HOH 13 3 HOH HOH 1014 A HOH 14 3 HOH HOH 1015 A HOH 15 3 HOH HOH 1016 A HOH 16 3 HOH HOH 1017 A HOH 17 3 HOH HOH 1018 A HOH 18 3 HOH HOH 1019 A HOH 19 3 HOH HOH 1020 A HOH 20 3 HOH HOH 1021 A HOH 21 3 HOH HOH 1022 A HOH 22 3 HOH HOH 1023 A HOH 23 3 HOH HOH 1024 A HOH 24 3 HOH HOH 1025 A HOH 25 3 HOH HOH 1026 A HOH 26 3 HOH HOH 1027 A HOH 27 3 HOH HOH 1028 A HOH 28 3 HOH HOH 1029 A HOH 29 3 HOH HOH 1030 A HOH 30 3 HOH HOH 1031 A HOH 31 3 HOH HOH 1032 A HOH 32 3 HOH HOH 1033 A HOH 33 3 HOH HOH 1034 A HOH 34 3 HOH HOH 1035 A HOH 35 3 HOH HOH 1036 A HOH 36 3 HOH HOH 1037 A HOH 37 3 HOH HOH 1038 A HOH 38 3 HOH HOH 1039 A HOH 39 3 HOH HOH 1040 A HOH 40 3 HOH HOH 1041 A HOH 41 3 HOH HOH 1042 A HOH 42 3 HOH HOH 1043 A HOH 43 3 HOH HOH 1044 A HOH 44 3 HOH HOH 1045 A HOH 45 3 HOH HOH 1046 A HOH 46 3 HOH HOH 1047 A HOH 47 3 HOH HOH 1048 A HOH 48 3 HOH HOH 1049 A HOH 49 3 HOH HOH 1050 A HOH 50 3 HOH HOH 1051 A HOH 51 3 HOH HOH 1052 A HOH 52 3 HOH HOH 1053 A HOH 53 3 HOH HOH 1054 A HOH 54 3 HOH HOH 1055 A HOH 55 3 HOH HOH 1056 A HOH 56 3 HOH HOH 1057 A HOH 57 3 HOH HOH 1058 A HOH 58 3 HOH HOH 1059 A HOH 59 3 HOH HOH 1060 A HOH 60 3 HOH HOH 1061 A HOH 61 3 HOH HOH 1062 A HOH 62 3 HOH HOH 1063 A HOH 63 3 HOH HOH 1064 A HOH 64 3 HOH HOH 1065 A HOH 65 3 HOH HOH 1066 A HOH 66 3 HOH HOH 1067 A HOH 67 3 HOH HOH 1068 A HOH 68 3 HOH HOH 1069 A HOH 69 3 HOH HOH 1070 A HOH 70 3 HOH HOH 1071 A HOH 71 3 HOH HOH 1072 A HOH 72 3 HOH HOH 1073 A HOH 73 3 HOH HOH 1074 A HOH 74 3 HOH HOH 1075 A HOH 75 3 HOH HOH 1076 A HOH 76 3 HOH HOH 1077 A HOH 77 3 HOH HOH 1078 A HOH 78 3 HOH HOH 1079 A HOH 79 3 HOH HOH 1080 A HOH 80 3 HOH HOH 1081 A HOH 81 3 HOH HOH 1082 A HOH 82 3 HOH HOH 1083 A HOH 83 3 HOH HOH 1084 A HOH 84 3 HOH HOH 1085 A HOH 85 3 HOH HOH 1086 A HOH 86 3 HOH HOH 1087 A HOH 87 3 HOH HOH 1088 A HOH 88 3 HOH HOH 1089 A HOH 89 3 HOH HOH 1090 A HOH 90 3 HOH HOH 1091 A HOH 91 3 HOH HOH 1092 A HOH 92 3 HOH HOH 1093 A HOH 93 3 HOH HOH 1094 A HOH 94 3 HOH HOH 1095 A HOH 95 3 HOH HOH 1096 A HOH 96 3 HOH HOH 1097 A HOH 97 3 HOH HOH 1098 A HOH 98 3 HOH HOH 1099 A HOH 99 3 HOH HOH 1100 A HOH 100 3 HOH HOH 1101 A HOH 101 3 HOH HOH 1102 A HOH 102 3 HOH HOH 1103 A HOH 103 3 HOH HOH 1104 A HOH 104 3 HOH HOH 1105 A HOH 105 3 HOH HOH 1106 A HOH 106 3 HOH HOH 1107 A HOH 107 3 HOH HOH 1108 A HOH 108 3 HOH HOH 1109 A HOH 109 3 HOH HOH 1110 A HOH 110 3 HOH HOH 1111 A HOH 111 3 HOH HOH 1112 A HOH 112 3 HOH HOH 1113 A HOH 113 3 HOH HOH 1114 A HOH 114 3 HOH HOH 1115 A HOH 115 3 HOH HOH 1116 A HOH 116 3 HOH HOH 1117 A HOH 117 3 HOH HOH 1118 A HOH 118 3 HOH HOH 1119 A HOH 119 3 HOH HOH 1120 A HOH 120 3 HOH HOH 1121 A HOH 121 3 HOH HOH 1122 A HOH 122 3 HOH HOH 1123 A HOH 123 3 HOH HOH 1124 A HOH 124 3 HOH HOH 1125 A HOH 125 3 HOH HOH 1126 A HOH 126 3 HOH HOH 1127 A HOH 127 3 HOH HOH 1128 A HOH 128 3 HOH HOH 1129 A HOH 129 3 HOH HOH 1130 A HOH 130 3 HOH HOH 1131 A HOH 131 3 HOH HOH 1132 A HOH 132 3 HOH HOH 1133 A HOH 133 3 HOH HOH 1134 A HOH 134 3 HOH HOH 1135 A HOH 135 3 HOH HOH 1136 A HOH 136 3 HOH HOH 1137 A HOH 137 3 HOH HOH 1138 A HOH 138 3 HOH HOH 1139 A HOH 139 3 HOH HOH 1140 A HOH 140 3 HOH HOH 1141 A HOH 141 3 HOH HOH 1142 A HOH 142 3 HOH HOH 1143 A HOH 143 3 HOH HOH 1144 A HOH 144 3 HOH HOH 1145 A HOH 145 3 HOH HOH 1146 A HOH 146 3 HOH HOH 1147 A HOH 147 3 HOH HOH 1148 A HOH 148 3 HOH HOH 1149 A HOH 149 3 HOH HOH 1150 A HOH 150 3 HOH HOH 1151 A HOH 151 3 HOH HOH 1152 A HOH 152 3 HOH HOH 1153 A HOH 153 3 HOH HOH 1154 A HOH 154 3 HOH HOH 1155 A HOH 155 3 HOH HOH 1156 A HOH 156 3 HOH HOH 1157 A HOH 157 3 HOH HOH 1158 A HOH 158 3 HOH HOH 1159 A HOH 159 3 HOH HOH 1160 A HOH 160 3 HOH HOH 1161 A HOH 161 3 HOH HOH 1162 A HOH 162 3 HOH HOH 1163 A HOH 163 3 HOH HOH 1164 A HOH 164 3 HOH HOH 1165 A HOH 165 3 HOH HOH 1166 A HOH 166 3 HOH HOH 1167 A HOH 167 3 HOH HOH 1168 A HOH 168 3 HOH HOH 1169 A HOH 169 3 HOH HOH 1170 A HOH 170 3 HOH HOH 1171 A HOH 171 3 HOH HOH 1172 A HOH 172 3 HOH HOH 1173 A HOH 173 3 HOH HOH 1174 A HOH 174 3 HOH HOH 1175 A n 1 29 A n 2 30 A n 3 31 A n 4 32 A PRO 33 n 5 PRO 33 A LEU 34 n 6 LEU 34 A GLU 35 n 7 GLU 35 A SER 36 n 8 SER 36 A GLN 37 n 9 GLN 37 A TYR 38 n 10 TYR 38 A GLN 39 n 11 GLN 39 A VAL 40 n 12 VAL 40 A GLY 41 n 13 GLY 41 A PRO 42 n 14 PRO 42 A LEU 43 n 15 LEU 43 A LEU 44 n 16 LEU 44 A GLY 45 n 17 GLY 45 A SER 46 n 18 SER 46 A GLY 47 n 19 GLY 47 A GLY 48 n 20 GLY 48 A PHE 49 n 21 PHE 49 A GLY 50 n 22 GLY 50 A SER 51 n 23 SER 51 A VAL 52 n 24 VAL 52 A TYR 53 n 25 TYR 53 A SER 54 n 26 SER 54 A GLY 55 n 27 GLY 55 A ILE 56 n 28 ILE 56 A ARG 57 n 29 ARG 57 A VAL 58 n 30 VAL 58 A SER 59 n 31 SER 59 A ASP 60 n 32 ASP 60 A ASN 61 n 33 ASN 61 A LEU 62 n 34 LEU 62 A PRO 63 n 35 PRO 63 A VAL 64 n 36 VAL 64 A ALA 65 n 37 ALA 65 A ILE 66 n 38 ILE 66 A LYS 67 n 39 LYS 67 A HIS 68 n 40 HIS 68 A VAL 69 n 41 VAL 69 A GLU 70 n 42 GLU 70 A LYS 71 n 43 LYS 71 A ASP 72 n 44 ASP 72 A ARG 73 n 45 ARG 73 A ILE 74 n 46 ILE 74 A SER 75 n 47 SER 75 A ASP 76 n 48 ASP 76 A TRP 77 n 49 TRP 77 A GLY 78 n 50 GLY 78 A GLU 79 n 51 GLU 79 A LEU 80 n 52 LEU 80 A PRO 81 n 53 PRO 81 A ASN 82 n 54 ASN 82 A GLY 83 n 55 GLY 83 A THR 84 n 56 THR 84 A ARG 85 n 57 ARG 85 A VAL 86 n 58 VAL 86 A PRO 87 n 59 PRO 87 A MET 88 n 60 MET 88 A GLU 89 n 61 GLU 89 A VAL 90 n 62 VAL 90 A VAL 91 n 63 VAL 91 A LEU 92 n 64 LEU 92 A LEU 93 n 65 LEU 93 A LYS 94 n 66 LYS 94 A LYS 95 n 67 LYS 95 A VAL 96 n 68 VAL 96 A SER 97 n 69 SER 97 A SER 98 n 70 SER 98 A GLY 99 n 71 GLY 99 A PHE 100 n 72 PHE 100 A SER 101 n 73 SER 101 A GLY 102 n 74 GLY 102 A VAL 103 n 75 VAL 103 A ILE 104 n 76 ILE 104 A ARG 105 n 77 ARG 105 A LEU 106 n 78 LEU 106 A LEU 107 n 79 LEU 107 A ASP 108 n 80 ASP 108 A TRP 109 n 81 TRP 109 A PHE 110 n 82 PHE 110 A GLU 111 n 83 GLU 111 A ARG 112 n 84 ARG 112 A PRO 113 n 85 PRO 113 A ASP 114 n 86 ASP 114 A SER 115 n 87 SER 115 A PHE 116 n 88 PHE 116 A VAL 117 n 89 VAL 117 A LEU 118 n 90 LEU 118 A ILE 119 n 91 ILE 119 A LEU 120 n 92 LEU 120 A GLU 121 n 93 GLU 121 A ARG 122 n 94 ARG 122 A MET 123 n 95 MET 123 A GLU 124 n 96 GLU 124 A PRO 125 n 97 PRO 125 A VAL 126 n 98 VAL 126 A GLN 127 n 99 GLN 127 A ASP 128 n 100 ASP 128 A LEU 129 n 101 LEU 129 A PHE 130 n 102 PHE 130 A ASP 131 n 103 ASP 131 A PHE 132 n 104 PHE 132 A ILE 133 n 105 ILE 133 A THR 134 n 106 THR 134 A GLU 135 n 107 GLU 135 A ARG 136 n 108 ARG 136 A GLY 137 n 109 GLY 137 A ALA 138 n 110 ALA 138 A LEU 139 n 111 LEU 139 A GLN 140 n 112 GLN 140 A GLU 141 n 113 GLU 141 A GLU 142 n 114 GLU 142 A LEU 143 n 115 LEU 143 A ALA 144 n 116 ALA 144 A ARG 145 n 117 ARG 145 A SER 146 n 118 SER 146 A PHE 147 n 119 PHE 147 A PHE 148 n 120 PHE 148 A TRP 149 n 121 TRP 149 A GLN 150 n 122 GLN 150 A VAL 151 n 123 VAL 151 A LEU 152 n 124 LEU 152 A GLU 153 n 125 GLU 153 A ALA 154 n 126 ALA 154 A VAL 155 n 127 VAL 155 A ARG 156 n 128 ARG 156 A HIS 157 n 129 HIS 157 A CYS 158 n 130 CYS 158 A HIS 159 n 131 HIS 159 A ASN 160 n 132 ASN 160 A CYS 161 n 133 CYS 161 A GLY 162 n 134 GLY 162 A VAL 163 n 135 VAL 163 A LEU 164 n 136 LEU 164 A HIS 165 n 137 HIS 165 A ARG 166 n 138 ARG 166 A ASP 167 n 139 ASP 167 A ILE 168 n 140 ILE 168 A LYS 169 n 141 LYS 169 A ASP 170 n 142 ASP 170 A GLU 171 n 143 GLU 171 A ASN 172 n 144 ASN 172 A ILE 173 n 145 ILE 173 A LEU 174 n 146 LEU 174 A ILE 175 n 147 ILE 175 A ASP 176 n 148 ASP 176 A LEU 177 n 149 LEU 177 A ASN 178 n 150 ASN 178 A ARG 179 n 151 ARG 179 A GLY 180 n 152 GLY 180 A GLU 181 n 153 GLU 181 A LEU 182 n 154 LEU 182 A LYS 183 n 155 LYS 183 A LEU 184 n 156 LEU 184 A ILE 185 n 157 ILE 185 A ASP 186 n 158 ASP 186 A PHE 187 n 159 PHE 187 A GLY 188 n 160 GLY 188 A SER 189 n 161 SER 189 A GLY 190 n 162 GLY 190 A ALA 191 n 163 ALA 191 A LEU 192 n 164 LEU 192 A LEU 193 n 165 LEU 193 A LYS 194 n 166 LYS 194 A ASP 195 n 167 ASP 195 A THR 196 n 168 THR 196 A VAL 197 n 169 VAL 197 A TYR 198 n 170 TYR 198 A THR 199 n 171 THR 199 A ASP 200 n 172 ASP 200 A PHE 201 n 173 PHE 201 A ASP 202 n 174 ASP 202 A GLY 203 n 175 GLY 203 A THR 204 n 176 THR 204 A ARG 205 n 177 ARG 205 A VAL 206 n 178 VAL 206 A TYR 207 n 179 TYR 207 A SER 208 n 180 SER 208 A PRO 209 n 181 PRO 209 A PRO 210 n 182 PRO 210 A GLU 211 n 183 GLU 211 A TRP 212 n 184 TRP 212 A ILE 213 n 185 ILE 213 A ARG 214 n 186 ARG 214 A TYR 215 n 187 TYR 215 A HIS 216 n 188 HIS 216 A ARG 217 n 189 ARG 217 A TYR 218 n 190 TYR 218 A HIS 219 n 191 HIS 219 A GLY 220 n 192 GLY 220 A ARG 221 n 193 ARG 221 A SER 222 n 194 SER 222 A ALA 223 n 195 ALA 223 A ALA 224 n 196 ALA 224 A VAL 225 n 197 VAL 225 A TRP 226 n 198 TRP 226 A SER 227 n 199 SER 227 A LEU 228 n 200 LEU 228 A GLY 229 n 201 GLY 229 A ILE 230 n 202 ILE 230 A LEU 231 n 203 LEU 231 A LEU 232 n 204 LEU 232 A TYR 233 n 205 TYR 233 A ASP 234 n 206 ASP 234 A MET 235 n 207 MET 235 A VAL 236 n 208 VAL 236 A CYS 237 n 209 CYS 237 A GLY 238 n 210 GLY 238 A ASP 239 n 211 ASP 239 A ILE 240 n 212 ILE 240 A PRO 241 n 213 PRO 241 A PHE 242 n 214 PHE 242 A GLU 243 n 215 GLU 243 A HIS 244 n 216 HIS 244 A ASP 245 n 217 ASP 245 A GLU 246 n 218 GLU 246 A GLU 247 n 219 GLU 247 A ILE 248 n 220 ILE 248 A ILE 249 n 221 ILE 249 A ARG 250 n 222 ARG 250 A GLY 251 n 223 GLY 251 A GLN 252 n 224 GLN 252 A VAL 253 n 225 VAL 253 A PHE 254 n 226 PHE 254 A PHE 255 n 227 PHE 255 A ARG 256 n 228 ARG 256 A GLN 257 n 229 GLN 257 A ARG 258 n 230 ARG 258 A VAL 259 n 231 VAL 259 A SER 260 n 232 SER 260 A SER 261 n 233 SER 261 A GLU 262 n 234 GLU 262 A CYS 263 n 235 CYS 263 A GLN 264 n 236 GLN 264 A HIS 265 n 237 HIS 265 A LEU 266 n 238 LEU 266 A ILE 267 n 239 ILE 267 A ARG 268 n 240 ARG 268 A TRP 269 n 241 TRP 269 A CYS 270 n 242 CYS 270 A LEU 271 n 243 LEU 271 A ALA 272 n 244 ALA 272 A LEU 273 n 245 LEU 273 A ARG 274 n 246 ARG 274 A PRO 275 n 247 PRO 275 A SER 276 n 248 SER 276 A ASP 277 n 249 ASP 277 A ARG 278 n 250 ARG 278 A PRO 279 n 251 PRO 279 A THR 280 n 252 THR 280 A PHE 281 n 253 PHE 281 A GLU 282 n 254 GLU 282 A GLU 283 n 255 GLU 283 A ILE 284 n 256 ILE 284 A GLN 285 n 257 GLN 285 A ASN 286 n 258 ASN 286 A HIS 287 n 259 HIS 287 A PRO 288 n 260 PRO 288 A TRP 289 n 261 TRP 289 A MET 290 n 262 MET 290 A GLN 291 n 263 GLN 291 A ASP 292 n 264 ASP 292 A VAL 293 n 265 VAL 293 A LEU 294 n 266 LEU 294 A LEU 295 n 267 LEU 295 A PRO 296 n 268 PRO 296 A GLN 297 n 269 GLN 297 A GLU 298 n 270 GLU 298 A THR 299 n 271 THR 299 A ALA 300 n 272 ALA 300 A GLU 301 n 273 GLU 301 A ILE 302 n 274 ILE 302 A HIS 303 n 275 HIS 303 A LEU 304 n 276 LEU 304 A HIS 305 n 277 HIS 305 A SER 306 n 278 SER 306 A n 279 307 A n 280 308 A n 281 309 A n 282 310 A n 283 311 A n 284 312 A n 285 313 A n 286 314 A n 287 315 A n 288 316 A n 289 317 A n 290 318 A n 291 319 A n 292 320 A n 293 321 A 1.9261 0.5088 -0.4462 1.5837 -0.0840 1.5326 -0.0403 0.0779 0.0797 -0.0083 0.0754 -0.1216 -0.0445 0.2543 -0.0352 0.0646 -0.0319 -0.0213 0.0848 -0.0391 0.0647 refined 67.7810 27.5710 -0.8930 X-RAY DIFFRACTION A 33 A 5 A 306 A 278 X-RAY DIFFRACTION 1 author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N LEU 44 A N LEU 16 A O VAL 52 A O VAL 24 A N SER 51 A N SER 23 A O HIS 68 A O HIS 40 A N ALA 65 A N ALA 37 A O LEU 120 A O LEU 92 A O ILE 119 A O ILE 91 A N ASP 108 A N ASP 80 A N GLY 78 A N GLY 50 A O VAL 86 A O VAL 58 A N GLN 127 A N GLN 99 A O ILE 175 A O ILE 147 A N LEU 174 A N LEU 146 A O LYS 183 A O LYS 155 A N LEU 164 A N LEU 136 A O ALA 191 A O ALA 163 1 A LYS 29 A LYS 1 1 Y 1 A GLU 30 A GLU 2 1 Y 1 A LYS 31 A LYS 3 1 Y 1 A GLU 32 A GLU 4 1 Y 1 A LEU 307 A LEU 279 1 Y 1 A SER 308 A SER 280 1 Y 1 A PRO 309 A PRO 281 1 Y 1 A GLY 310 A GLY 282 1 Y 1 A PRO 311 A PRO 283 1 Y 1 A SER 312 A SER 284 1 Y 1 A LYS 313 A LYS 285 1 Y 1 A VAL 314 A VAL 286 1 Y 1 A ASP 315 A ASP 287 1 Y 1 A HIS 316 A HIS 288 1 Y 1 A HIS 317 A HIS 289 1 Y 1 A HIS 318 A HIS 290 1 Y 1 A HIS 319 A HIS 291 1 Y 1 A HIS 320 A HIS 292 1 Y 1 A HIS 321 A HIS 293 1 Y 1 A A O NZ SER LYS 101 183 1.88 1 A A O O PHE HOH 100 1127 1.95 1 5.79 0.90 118.30 124.09 A A A CB CG OD2 ASP ASP ASP 200 200 200 N 1 3.79 0.50 120.30 124.09 A A A NE CZ NH1 ARG ARG ARG 268 268 268 N 1 -3.30 0.50 120.30 117.00 A A A NE CZ NH2 ARG ARG ARG 268 268 268 N 1 5.40 0.90 118.30 123.70 A A A CB CG OD2 ASP ASP ASP 292 292 292 N 1 A LEU 34 96.44 -113.53 1 A ASP 60 -144.70 24.19 1 A SER 98 135.29 -165.89 1 A PHE 100 -64.22 93.96 1 A SER 101 -67.52 45.81 1 A ASP 167 -149.93 42.36 1 A ASP 186 59.08 88.63 1 A ASP 202 -143.70 28.09 27.464 1.49 0.74 0.00 1.49 0.00 -2.23 0.948 0.927 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.23668 0.19508 0.19724 2.20 84.51 1178 23005 21771 5.1 99.77 5.323 0.132 RANDOM LIKELY RESIDUAL 1 THROUGHOUT 1.5 MOLECULAR REPLACEMENT 0.195 0.177 0.80 0.80 1.40 APO Structure MAXIMUM LIKELIHOOD BABINET MODEL WITH MASK 2.20 84.51 174 2410 5 0 2231 0.011 0.021 2299 0.002 0.020 2078 1.385 1.943 3116 0.906 3.000 4812 2.941 5.000 273 0.093 0.200 332 0.004 0.020 2564 0.002 0.020 504 0.197 0.200 456 0.237 0.200 2413 0.082 0.200 1354 0.179 0.200 153 0.182 0.200 8 0.297 0.200 48 0.158 0.200 11 0.575 1.500 1364 1.089 2.000 2210 1.531 3.000 935 2.584 4.500 906 0.304 0.258 2.257 77 1603 20 2.2 84.51 1YXS 23005 1.5 1.5 1 99.8 2.2 2.26 1 100 refinement REFMAC 5.1.25 data reduction MOSFLM data scaling CCP4 (SCALA) phasing MOLREP Crystal Structure of Kinase Pim1 with P123M mutation 1 N N 2 N N 3 N N A MET 88 A MET 60 HELX_P A SER 97 A SER 69 1 1 10 A LEU 129 A LEU 101 HELX_P A GLY 137 A GLY 109 1 2 9 A GLN 140 A GLN 112 HELX_P A CYS 161 A CYS 133 1 3 22 A LYS 169 A LYS 141 HELX_P A GLU 171 A GLU 143 5 4 3 A THR 204 A THR 176 HELX_P A SER 208 A SER 180 5 5 5 A PRO 209 A PRO 181 HELX_P A HIS 216 A HIS 188 1 6 8 A HIS 219 A HIS 191 HELX_P A GLY 238 A GLY 210 1 7 20 A HIS 244 A HIS 216 HELX_P A GLY 251 A GLY 223 1 8 8 A SER 260 A SER 232 HELX_P A LEU 271 A LEU 243 1 9 12 A ARG 274 A ARG 246 HELX_P A ARG 278 A ARG 250 5 10 5 A THR 280 A THR 252 HELX_P A ASN 286 A ASN 258 1 11 7 A HIS 287 A HIS 259 HELX_P A GLN 291 A GLN 263 5 12 5 A LEU 295 A LEU 267 HELX_P A LEU 304 A LEU 276 1 13 10 TRANSFERASE Ser/Thr protein kinase, TRANSFERASE A GLU 124 A GLU 96 1 A PRO 125 A PRO 97 2.47 PIM1_HUMAN UNP 1 29 P11309 KEKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLD WFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFG SGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLIR WCLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLHSLSPGPSK 29 313 1YXS 29 313 P11309 A 1 1 285 1 PRO engineered mutation MET 123 1YXS A P11309 UNP 123 95 1 expression tag VAL 314 1YXS A P11309 UNP 286 1 expression tag ASP 315 1YXS A P11309 UNP 287 1 expression tag HIS 316 1YXS A P11309 UNP 288 1 expression tag HIS 317 1YXS A P11309 UNP 289 1 expression tag HIS 318 1YXS A P11309 UNP 290 1 expression tag HIS 319 1YXS A P11309 UNP 291 1 expression tag HIS 320 1YXS A P11309 UNP 292 1 expression tag HIS 321 1YXS A P11309 UNP 293 5 2 3 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A TYR 38 A TYR 10 A GLY 47 A GLY 19 A GLY 50 A GLY 22 A ARG 57 A ARG 29 A PRO 63 A PRO 35 A GLU 70 A GLU 42 A SER 115 A SER 87 A GLU 121 A GLU 93 A LEU 106 A LEU 78 A GLU 111 A GLU 83 A TRP 77 A TRP 49 A LEU 80 A LEU 52 A THR 84 A THR 56 A PRO 87 A PRO 59 A VAL 126 A VAL 98 A ASP 128 A ASP 100 A ILE 173 A ILE 145 A ASP 176 A ASP 148 A LEU 182 A LEU 154 A LEU 184 A LEU 156 A VAL 163 A VAL 135 A LEU 164 A LEU 136 A ALA 191 A ALA 163 A LEU 192 A LEU 164 BINDING SITE FOR RESIDUE IMD A 1001 A IMD 1001 Software 7 A PHE 130 A PHE 102 7 1_555 A ILE 133 A ILE 105 7 1_555 A THR 134 A THR 106 7 1_555 A ASP 170 A ASP 142 7 1_555 A ASP 234 A ASP 206 7 1_555 A GLY 238 A GLY 210 7 1_555 A ASP 239 A ASP 211 7 1_555 170 P 65