0.015684
0.000000
0.000000
0.000000
0.015838
0.000000
0.000000
0.000000
0.014432
0.00000
0.00000
0.00000
Krishnan, R.
Zhang, E.
Hakansson, K.
Arni, R.K.
Tulinsky, A.
Lim-Wilby, M.S.L.
Levy, O.E.
Semple, J.E.
Brunck, T.K.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
63.760
63.140
69.290
C23 H34 N6 O5 S
506.618
2-{(3S)-3-[(benzylsulfonyl)amino]-2-oxopiperidin-1-yl}-N-{(2S)-1-[(3S)-1-carbamimidoylpiperidin-3-yl]-3-oxopropan-2-yl}acetamide
CVS1695
peptide-like
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Ca 2
40.078
CALCIUM ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Biochemistry
BICHAW
0033
0006-2960
37
12094
12103
10.1021/bi980840e
9724521
Highly selective mechanism-based thrombin inhibitors: structures of thrombin and trypsin inhibited with rigid peptidyl aldehydes.
1998
10.2210/pdb1yyy/pdb
pdb_00001yyy
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
300
1
IMAGE PLATE
1995-09
RIGAKU
NI FILTER
M
x-ray
1
1.5418
1.0
1.5418
23324.287
TRYPSIN
3.4.21.4
1
nat
polymer
40.078
CALCIUM ION
1
syn
non-polymer
506.618
2-{(3S)-3-[(benzylsulfonyl)amino]-2-oxopiperidin-1-yl}-N-{(2S)-1-[(3S)-1-carbamimidoylpiperidin-3-yl]-3-oxopropan-2-yl}acetamide
1
syn
non-polymer
18.015
water
157
nat
water
TRP-CVS1695
no
no
IVGGYTCGANTVPYQVSLNSGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSNT
LNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNM
FCAGYLEGGKDSCQGDSGGPVVCSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIASN
IVGGYTCGANTVPYQVSLNSGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSNT
LNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNM
FCAGYLEGGKDSCQGDSGGPVVCSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIASN
1
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
cattle
Bos
sample
9913
Bos taurus
1
2.99
58.85
7.5
pH 7.5
database_2
pdbx_database_status
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Version format compliance
Atomic model
Database references
Derived calculations
Non-polymer description
Structure summary
Version format compliance
Other
Database references
Derived calculations
Other
Refinement description
1
0
1999-06-08
1
1
2008-03-24
1
2
2011-07-13
1
3
2012-12-12
1
4
2023-08-09
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
BNL
1998-06-03
REL
CA
CALCIUM ION
0KV
2-{(3S)-3-[(benzylsulfonyl)amino]-2-oxopiperidin-1-yl}-N-{(2S)-1-[(3S)-1-carbamimidoylpiperidin-3-yl]-3-oxopropan-2-yl}acetamide
HOH
water
THE ACTIVE SITE INHIBITOR IS IN ITS S CHIRAL FORM.
THE ACTIVE SITE SER 195 IS CLOSE TO THE CARBONYL CARBON
(C3) OF THE ALDEHYDE GROUP OF THE INHIBITOR FORMING A
TRANSITION-STATE COMPLEX.
1PPC
PDB ENTRY 1PPC
PDB
experimental model
Inhibitor
2-{(3S)-3-[(benzylsulfonyl)amino]-2-oxopiperidin-1-yl}-N-{(2S)-1-[(3S)-1-carbamimidoylpiperidin-3-yl]-3-oxopropan-2-yl}acetamide
Peptide-like
CA
701
2
CA
CA
701
1
0IV
1
3
0KV
0KV
1
1
HOH
401
4
HOH
HOH
401
1
HOH
402
4
HOH
HOH
402
1
HOH
403
4
HOH
HOH
403
1
HOH
404
4
HOH
HOH
404
1
HOH
405
4
HOH
HOH
405
1
HOH
406
4
HOH
HOH
406
1
HOH
407
4
HOH
HOH
407
1
HOH
408
4
HOH
HOH
408
1
HOH
409
4
HOH
HOH
409
1
HOH
410
4
HOH
HOH
410
1
HOH
411
4
HOH
HOH
411
1
HOH
412
4
HOH
HOH
412
1
HOH
413
4
HOH
HOH
413
1
HOH
414
4
HOH
HOH
414
1
HOH
415
4
HOH
HOH
415
1
HOH
416
4
HOH
HOH
416
1
HOH
417
4
HOH
HOH
417
1
HOH
418
4
HOH
HOH
418
1
HOH
419
4
HOH
HOH
419
1
HOH
420
4
HOH
HOH
420
1
HOH
421
4
HOH
HOH
421
1
HOH
422
4
HOH
HOH
422
1
HOH
423
4
HOH
HOH
423
1
HOH
424
4
HOH
HOH
424
1
HOH
425
4
HOH
HOH
425
1
HOH
426
4
HOH
HOH
426
1
HOH
427
4
HOH
HOH
427
1
HOH
428
4
HOH
HOH
428
1
HOH
429
4
HOH
HOH
429
1
HOH
430
4
HOH
HOH
430
1
HOH
431
4
HOH
HOH
431
1
HOH
432
4
HOH
HOH
432
1
HOH
433
4
HOH
HOH
433
1
HOH
434
4
HOH
HOH
434
1
HOH
435
4
HOH
HOH
435
1
HOH
436
4
HOH
HOH
436
1
HOH
437
4
HOH
HOH
437
1
HOH
438
4
HOH
HOH
438
1
HOH
439
4
HOH
HOH
439
1
HOH
440
4
HOH
HOH
440
1
HOH
441
4
HOH
HOH
441
1
HOH
442
4
HOH
HOH
442
1
HOH
443
4
HOH
HOH
443
1
HOH
444
4
HOH
HOH
444
1
HOH
445
4
HOH
HOH
445
1
HOH
446
4
HOH
HOH
446
1
HOH
447
4
HOH
HOH
447
1
HOH
448
4
HOH
HOH
448
1
HOH
449
4
HOH
HOH
449
1
HOH
451
4
HOH
HOH
451
1
HOH
452
4
HOH
HOH
452
1
HOH
453
4
HOH
HOH
453
1
HOH
454
4
HOH
HOH
454
1
HOH
455
4
HOH
HOH
455
1
HOH
456
4
HOH
HOH
456
1
HOH
457
4
HOH
HOH
457
1
HOH
458
4
HOH
HOH
458
1
HOH
460
4
HOH
HOH
460
1
HOH
461
4
HOH
HOH
461
1
HOH
462
4
HOH
HOH
462
1
HOH
463
4
HOH
HOH
463
1
HOH
464
4
HOH
HOH
464
1
HOH
466
4
HOH
HOH
466
1
HOH
467
4
HOH
HOH
467
1
HOH
468
4
HOH
HOH
468
1
HOH
469
4
HOH
HOH
469
1
HOH
470
4
HOH
HOH
470
1
HOH
471
4
HOH
HOH
471
1
HOH
473
4
HOH
HOH
473
1
HOH
474
4
HOH
HOH
474
1
HOH
475
4
HOH
HOH
475
1
HOH
476
4
HOH
HOH
476
1
HOH
478
4
HOH
HOH
478
1
HOH
481
4
HOH
HOH
481
1
HOH
483
4
HOH
HOH
483
1
HOH
486
4
HOH
HOH
486
1
HOH
487
4
HOH
HOH
487
1
HOH
490
4
HOH
HOH
490
1
HOH
491
4
HOH
HOH
491
1
HOH
493
4
HOH
HOH
493
1
HOH
494
4
HOH
HOH
494
1
HOH
496
4
HOH
HOH
496
1
HOH
497
4
HOH
HOH
497
1
HOH
498
4
HOH
HOH
498
1
HOH
499
4
HOH
HOH
499
1
HOH
500
4
HOH
HOH
500
1
HOH
501
4
HOH
HOH
501
1
HOH
502
4
HOH
HOH
502
1
HOH
503
4
HOH
HOH
503
1
HOH
504
4
HOH
HOH
504
1
HOH
505
4
HOH
HOH
505
1
HOH
506
4
HOH
HOH
506
1
HOH
507
4
HOH
HOH
507
1
HOH
508
4
HOH
HOH
508
1
HOH
509
4
HOH
HOH
509
1
HOH
510
4
HOH
HOH
510
1
HOH
511
4
HOH
HOH
511
1
HOH
512
4
HOH
HOH
512
1
HOH
514
4
HOH
HOH
514
1
HOH
515
4
HOH
HOH
515
1
HOH
516
4
HOH
HOH
516
1
HOH
517
4
HOH
HOH
517
1
HOH
521
4
HOH
HOH
521
1
HOH
522
4
HOH
HOH
522
1
HOH
525
4
HOH
HOH
525
1
HOH
526
4
HOH
HOH
526
1
HOH
527
4
HOH
HOH
527
1
HOH
528
4
HOH
HOH
528
1
HOH
530
4
HOH
HOH
530
1
HOH
532
4
HOH
HOH
532
1
HOH
534
4
HOH
HOH
534
1
HOH
535
4
HOH
HOH
535
1
HOH
536
4
HOH
HOH
536
1
HOH
539
4
HOH
HOH
539
1
HOH
540
4
HOH
HOH
540
1
HOH
541
4
HOH
HOH
541
1
HOH
542
4
HOH
HOH
542
1
HOH
547
4
HOH
HOH
547
1
HOH
550
4
HOH
HOH
550
1
HOH
553
4
HOH
HOH
553
1
HOH
554
4
HOH
HOH
554
1
HOH
555
4
HOH
HOH
555
1
HOH
556
4
HOH
HOH
556
1
HOH
558
4
HOH
HOH
558
1
HOH
559
4
HOH
HOH
559
1
HOH
561
4
HOH
HOH
561
1
HOH
562
4
HOH
HOH
562
1
HOH
567
4
HOH
HOH
567
1
HOH
569
4
HOH
HOH
569
1
HOH
570
4
HOH
HOH
570
1
HOH
573
4
HOH
HOH
573
1
HOH
574
4
HOH
HOH
574
1
HOH
576
4
HOH
HOH
576
1
HOH
577
4
HOH
HOH
577
1
HOH
583
4
HOH
HOH
583
1
HOH
584
4
HOH
HOH
584
1
HOH
585
4
HOH
HOH
585
1
HOH
587
4
HOH
HOH
587
1
HOH
588
4
HOH
HOH
588
1
HOH
589
4
HOH
HOH
589
1
HOH
591
4
HOH
HOH
591
1
HOH
592
4
HOH
HOH
592
1
HOH
594
4
HOH
HOH
594
1
HOH
595
4
HOH
HOH
595
1
HOH
596
4
HOH
HOH
596
1
HOH
598
4
HOH
HOH
598
1
HOH
602
4
HOH
HOH
602
1
HOH
603
4
HOH
HOH
603
1
HOH
610
4
HOH
HOH
610
1
HOH
612
4
HOH
HOH
612
1
HOH
614
4
HOH
HOH
614
1
HOH
617
4
HOH
HOH
617
1
HOH
623
4
HOH
HOH
623
1
HOH
626
4
HOH
HOH
626
1
HOH
627
4
HOH
HOH
627
1
HOH
634
4
HOH
HOH
634
1
HOH
644
4
HOH
HOH
644
1
ILE
16
n
1
ILE
16
1
VAL
17
n
2
VAL
17
1
GLY
18
n
3
GLY
18
1
GLY
19
n
4
GLY
19
1
TYR
20
n
5
TYR
20
1
THR
21
n
6
THR
21
1
CYS
22
n
7
CYS
22
1
GLY
23
n
8
GLY
23
1
ALA
24
n
9
ALA
24
1
ASN
25
n
10
ASN
25
1
THR
26
n
11
THR
26
1
VAL
27
n
12
VAL
27
1
PRO
28
n
13
PRO
28
1
TYR
29
n
14
TYR
29
1
GLN
30
n
15
GLN
30
1
VAL
31
n
16
VAL
31
1
SER
32
n
17
SER
32
1
LEU
33
n
18
LEU
33
1
ASN
34
n
19
ASN
34
1
SER
37
n
20
SER
37
1
GLY
38
n
21
GLY
38
1
TYR
39
n
22
TYR
39
1
HIS
40
n
23
HIS
40
1
PHE
41
n
24
PHE
41
1
CYS
42
n
25
CYS
42
1
GLY
43
n
26
GLY
43
1
GLY
44
n
27
GLY
44
1
SER
45
n
28
SER
45
1
LEU
46
n
29
LEU
46
1
ILE
47
n
30
ILE
47
1
ASN
48
n
31
ASN
48
1
SER
49
n
32
SER
49
1
GLN
50
n
33
GLN
50
1
TRP
51
n
34
TRP
51
1
VAL
52
n
35
VAL
52
1
VAL
53
n
36
VAL
53
1
SER
54
n
37
SER
54
1
ALA
55
n
38
ALA
55
1
ALA
56
n
39
ALA
56
1
HIS
57
n
40
HIS
57
1
CYS
58
n
41
CYS
58
1
TYR
59
n
42
TYR
59
1
LYS
60
n
43
LYS
60
1
SER
61
n
44
SER
61
1
GLY
62
n
45
GLY
62
1
ILE
63
n
46
ILE
63
1
GLN
64
n
47
GLN
64
1
VAL
65
n
48
VAL
65
1
ARG
66
n
49
ARG
66
1
LEU
67
n
50
LEU
67
1
GLY
69
n
51
GLY
69
1
GLU
70
n
52
GLU
70
1
ASP
71
n
53
ASP
71
1
ASN
72
n
54
ASN
72
1
ILE
73
n
55
ILE
73
1
ASN
74
n
56
ASN
74
1
VAL
75
n
57
VAL
75
1
VAL
76
n
58
VAL
76
1
GLU
77
n
59
GLU
77
1
GLY
78
n
60
GLY
78
1
ASN
79
n
61
ASN
79
1
GLU
80
n
62
GLU
80
1
GLN
81
n
63
GLN
81
1
PHE
82
n
64
PHE
82
1
ILE
83
n
65
ILE
83
1
SER
84
n
66
SER
84
1
ALA
85
n
67
ALA
85
1
SER
86
n
68
SER
86
1
LYS
87
n
69
LYS
87
1
SER
88
n
70
SER
88
1
ILE
89
n
71
ILE
89
1
VAL
90
n
72
VAL
90
1
HIS
91
n
73
HIS
91
1
PRO
92
n
74
PRO
92
1
SER
93
n
75
SER
93
1
TYR
94
n
76
TYR
94
1
ASN
95
n
77
ASN
95
1
SER
96
n
78
SER
96
1
ASN
97
n
79
ASN
97
1
THR
98
n
80
THR
98
1
LEU
99
n
81
LEU
99
1
ASN
100
n
82
ASN
100
1
ASN
101
n
83
ASN
101
1
ASP
102
n
84
ASP
102
1
ILE
103
n
85
ILE
103
1
MET
104
n
86
MET
104
1
LEU
105
n
87
LEU
105
1
ILE
106
n
88
ILE
106
1
LYS
107
n
89
LYS
107
1
LEU
108
n
90
LEU
108
1
LYS
109
n
91
LYS
109
1
SER
110
n
92
SER
110
1
ALA
111
n
93
ALA
111
1
ALA
112
n
94
ALA
112
1
SER
113
n
95
SER
113
1
LEU
114
n
96
LEU
114
1
ASN
115
n
97
ASN
115
1
SER
116
n
98
SER
116
1
ARG
117
n
99
ARG
117
1
VAL
118
n
100
VAL
118
1
ALA
119
n
101
ALA
119
1
SER
120
n
102
SER
120
1
ILE
121
n
103
ILE
121
1
SER
122
n
104
SER
122
1
LEU
123
n
105
LEU
123
1
PRO
124
n
106
PRO
124
1
THR
125
n
107
THR
125
1
SER
127
n
108
SER
127
1
CYS
128
n
109
CYS
128
1
ALA
129
n
110
ALA
129
1
SER
130
n
111
SER
130
1
ALA
132
n
112
ALA
132
1
GLY
133
n
113
GLY
133
1
THR
134
n
114
THR
134
1
GLN
135
n
115
GLN
135
1
CYS
136
n
116
CYS
136
1
LEU
137
n
117
LEU
137
1
ILE
138
n
118
ILE
138
1
SER
139
n
119
SER
139
1
GLY
140
n
120
GLY
140
1
TRP
141
n
121
TRP
141
1
GLY
142
n
122
GLY
142
1
ASN
143
n
123
ASN
143
1
THR
144
n
124
THR
144
1
LYS
145
n
125
LYS
145
1
SER
146
n
126
SER
146
1
SER
147
n
127
SER
147
1
GLY
148
n
128
GLY
148
1
THR
149
n
129
THR
149
1
SER
150
n
130
SER
150
1
TYR
151
n
131
TYR
151
1
PRO
152
n
132
PRO
152
1
ASP
153
n
133
ASP
153
1
VAL
154
n
134
VAL
154
1
LEU
155
n
135
LEU
155
1
LYS
156
n
136
LYS
156
1
CYS
157
n
137
CYS
157
1
LEU
158
n
138
LEU
158
1
LYS
159
n
139
LYS
159
1
ALA
160
n
140
ALA
160
1
PRO
161
n
141
PRO
161
1
ILE
162
n
142
ILE
162
1
LEU
163
n
143
LEU
163
1
SER
164
n
144
SER
164
1
ASP
165
n
145
ASP
165
1
SER
166
n
146
SER
166
1
SER
167
n
147
SER
167
1
CYS
168
n
148
CYS
168
1
LYS
169
n
149
LYS
169
1
SER
170
n
150
SER
170
1
ALA
171
n
151
ALA
171
1
TYR
172
n
152
TYR
172
1
PRO
173
n
153
PRO
173
1
GLY
174
n
154
GLY
174
1
GLN
175
n
155
GLN
175
1
ILE
176
n
156
ILE
176
1
THR
177
n
157
THR
177
1
SER
178
n
158
SER
178
1
ASN
179
n
159
ASN
179
1
MET
180
n
160
MET
180
1
PHE
181
n
161
PHE
181
1
CYS
182
n
162
CYS
182
1
ALA
183
n
163
ALA
183
1
GLY
184
n
164
A
GLY
184
1
TYR
184
n
165
TYR
184
1
LEU
185
n
166
LEU
185
1
GLU
186
n
167
GLU
186
1
GLY
187
n
168
GLY
187
1
GLY
188
n
169
A
GLY
188
1
LYS
188
n
170
LYS
188
1
ASP
189
n
171
ASP
189
1
SER
190
n
172
SER
190
1
CYS
191
n
173
CYS
191
1
GLN
192
n
174
GLN
192
1
GLY
193
n
175
GLY
193
1
ASP
194
n
176
ASP
194
1
SER
195
n
177
SER
195
1
GLY
196
n
178
GLY
196
1
GLY
197
n
179
GLY
197
1
PRO
198
n
180
PRO
198
1
VAL
199
n
181
VAL
199
1
VAL
200
n
182
VAL
200
1
CYS
201
n
183
CYS
201
1
SER
202
n
184
SER
202
1
GLY
203
n
185
GLY
203
1
LYS
204
n
186
LYS
204
1
LEU
209
n
187
LEU
209
1
GLN
210
n
188
GLN
210
1
GLY
211
n
189
GLY
211
1
ILE
212
n
190
ILE
212
1
VAL
213
n
191
VAL
213
1
SER
214
n
192
SER
214
1
TRP
215
n
193
TRP
215
1
GLY
216
n
194
GLY
216
1
SER
217
n
195
SER
217
1
GLY
219
n
196
GLY
219
1
CYS
220
n
197
CYS
220
1
ALA
221
n
198
A
ALA
221
1
GLN
221
n
199
GLN
221
1
LYS
222
n
200
LYS
222
1
ASN
223
n
201
ASN
223
1
LYS
224
n
202
LYS
224
1
PRO
225
n
203
PRO
225
1
GLY
226
n
204
GLY
226
1
VAL
227
n
205
VAL
227
1
TYR
228
n
206
TYR
228
1
THR
229
n
207
THR
229
1
LYS
230
n
208
LYS
230
1
VAL
231
n
209
VAL
231
1
CYS
232
n
210
CYS
232
1
ASN
233
n
211
ASN
233
1
TYR
234
n
212
TYR
234
1
VAL
235
n
213
VAL
235
1
SER
236
n
214
SER
236
1
TRP
237
n
215
TRP
237
1
ILE
238
n
216
ILE
238
1
LYS
239
n
217
LYS
239
1
GLN
240
n
218
GLN
240
1
THR
241
n
219
THR
241
1
ILE
242
n
220
ILE
242
1
ALA
243
n
221
ALA
243
1
SER
244
n
222
SER
244
1
ASN
245
n
223
ASN
245
1
author_and_software_defined_assembly
PISA
1
monomeric
1
GLU
70
A
OE1
GLU
52
1_555
1
CA
701
B
CA
CA
1_555
1
ASN
72
A
O
ASN
54
1_555
85.6
1
GLU
70
A
OE1
GLU
52
1_555
1
CA
701
B
CA
CA
1_555
1
VAL
75
A
O
VAL
57
1_555
162.0
1
ASN
72
A
O
ASN
54
1_555
1
CA
701
B
CA
CA
1_555
1
VAL
75
A
O
VAL
57
1_555
87.2
1
GLU
70
A
OE1
GLU
52
1_555
1
CA
701
B
CA
CA
1_555
1
GLU
80
A
OE2
GLU
62
1_555
102.5
1
ASN
72
A
O
ASN
54
1_555
1
CA
701
B
CA
CA
1_555
1
GLU
80
A
OE2
GLU
62
1_555
156.4
1
VAL
75
A
O
VAL
57
1_555
1
CA
701
B
CA
CA
1_555
1
GLU
80
A
OE2
GLU
62
1_555
90.6
1
GLU
70
A
OE1
GLU
52
1_555
1
CA
701
B
CA
CA
1_555
1
HOH
409
D
O
HOH
1_555
78.7
1
ASN
72
A
O
ASN
54
1_555
1
CA
701
B
CA
CA
1_555
1
HOH
409
D
O
HOH
1_555
107.6
1
VAL
75
A
O
VAL
57
1_555
1
CA
701
B
CA
CA
1_555
1
HOH
409
D
O
HOH
1_555
87.8
1
GLU
80
A
OE2
GLU
62
1_555
1
CA
701
B
CA
CA
1_555
1
HOH
409
D
O
HOH
1_555
95.8
1
GLU
70
A
OE1
GLU
52
1_555
1
CA
701
B
CA
CA
1_555
1
HOH
574
D
O
HOH
1_555
87.9
1
ASN
72
A
O
ASN
54
1_555
1
CA
701
B
CA
CA
1_555
1
HOH
574
D
O
HOH
1_555
84.3
1
VAL
75
A
O
VAL
57
1_555
1
CA
701
B
CA
CA
1_555
1
HOH
574
D
O
HOH
1_555
107.8
1
GLU
80
A
OE2
GLU
62
1_555
1
CA
701
B
CA
CA
1_555
1
HOH
574
D
O
HOH
1_555
74.0
1
HOH
409
D
O
HOH
1_555
1
CA
701
B
CA
CA
1_555
1
HOH
574
D
O
HOH
1_555
161.1
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
O
GLN
81
A
O
GLN
63
1
N
LEU
67
A
N
LEU
50
1
O
GLN
64
A
O
GLN
47
1
N
ASN
34
A
N
ASN
19
1
O
VAL
31
A
O
VAL
16
1
N
GLY
44
A
N
GLY
27
1
O
SER
45
A
O
SER
28
1
N
VAL
53
A
N
VAL
36
1
O
VAL
52
A
O
VAL
35
1
N
ILE
106
A
N
ILE
88
1
O
LEU
105
A
O
LEU
87
1
N
ILE
89
A
N
ILE
71
1
O
LYS
156
A
O
LYS
136
1
N
GLY
140
A
N
GLY
120
1
O
LEU
137
A
O
LEU
117
1
N
VAL
200
A
N
VAL
182
1
O
VAL
199
A
O
VAL
181
1
N
GLY
211
A
N
GLY
189
1
O
ILE
212
A
O
ILE
190
1
N
THR
229
A
N
THR
207
1
O
GLY
226
A
O
GLY
204
1
N
ALA
183
A
N
ALA
163
1
1
C7
0KV
1
C
C7
0KV
1
1
N
1
1
C8
0KV
1
C
C8
0KV
1
1
N
1
1
C9
0KV
1
C
C9
0KV
1
1
N
1
1
C10
0KV
1
C
C10
0KV
1
1
N
1
1
C11
0KV
1
C
C11
0KV
1
1
N
1
1
C12
0KV
1
C
C12
0KV
1
1
N
1
1
C13
0KV
1
C
C13
0KV
1
1
N
1
1
1
OG
C3
SER
0KV
195
1
1.70
1
1
1
OG
O3
SER
0KV
195
1
2.18
1
1
GLY
44
10.94
1
1
ASN
48
-10.03
1
1
GLU
77
15.20
1
1
ALA
111
10.05
1
1
ARG
117
18.93
1
1
SER
120
10.70
1
1
ALA
129
-10.57
1
1
GLN
135
-10.89
1
1
LEU
155
-11.98
1
1
GLU
186
-11.13
1
1
GLY
193
10.56
1
1
SER
195
-10.27
1
1
LYS
204
-20.15
1
1
VAL
213
-14.30
1
1
GLY
216
-11.44
1
1
TYR
29
0.062
SIDE CHAIN
1
1
ARG
117
0.109
SIDE CHAIN
1
-9.79
1.60
110.90
101.11
1
1
1
CG1
CB
CG2
VAL
VAL
VAL
53
53
53
N
1
-4.05
0.60
121.00
116.95
1
1
1
CB
CG
CD1
TYR
TYR
TYR
59
59
59
N
1
8.35
0.50
120.30
128.65
1
1
1
NE
CZ
NH1
ARG
ARG
ARG
66
66
66
N
1
-5.16
0.50
120.30
115.14
1
1
1
NE
CZ
NH2
ARG
ARG
ARG
66
66
66
N
1
-6.53
0.60
121.00
114.47
1
1
1
CB
CG
CD2
TYR
TYR
TYR
94
94
94
N
1
10.36
1.60
100.20
110.56
1
1
1
CG
SD
CE
MET
MET
MET
104
104
104
N
1
-16.48
2.00
110.40
93.92
1
1
1
CB
CA
C
ARG
ARG
ARG
117
117
117
N
1
3.27
0.50
120.30
123.57
1
1
1
NE
CZ
NH1
ARG
ARG
ARG
117
117
117
N
1
-7.38
0.50
120.30
112.92
1
1
1
NE
CZ
NH2
ARG
ARG
ARG
117
117
117
N
1
13.52
1.90
110.10
123.62
1
1
1
CB
CA
C
SER
SER
SER
130
130
130
N
1
-12.45
2.00
110.40
97.95
1
1
1
CB
CA
C
LYS
LYS
LYS
145
145
145
N
1
-4.53
0.60
121.00
116.47
1
1
1
CB
CG
CD1
TYR
TYR
TYR
151
151
151
N
1
5.80
0.90
118.30
124.10
1
1
1
CB
CG
OD1
ASP
ASP
ASP
153
153
153
N
1
-8.59
0.90
118.30
109.71
1
1
1
CB
CG
OD2
ASP
ASP
ASP
153
153
153
N
1
12.22
0.90
118.30
130.52
1
1
1
CB
CG
OD1
ASP
ASP
ASP
165
165
165
N
1
1
ASP
71
-117.05
-76.47
1
1
ASN
79
93.75
-7.00
1
1
GLN
192
-39.47
124.43
1
1
SER
195
-47.53
150.33
1
1
SER
214
-128.53
-75.48
1
1
ASN
223
49.70
22.56
17.10
0.157
2.1
7.0
13035
72
1
THROUGHOUT
3.0
MOLECULAR REPLACEMENT
PDB ENTRY 1PPC
0.2
7.0
2.1
7.0
157
1815
29
0
1629
0.015
0.020
0.035
0.030
0.055
0.050
1.1
1.0
1.8
1.5
2.6
2.0
3.8
2.5
0.027
0.030
0.15
0.20
0.22
0.60
0.31
0.60
0.28
0.60
4.
3
20.
15
30.
20
2.1
1YYY
13609
2.0
0.043
0.12
1
15.4
2.00
76
0.061
2.1
2.3
2.5
0.25
1
2.
52
data collection
R-AXIS
II
data reduction
R-AXIS
II
model building
X-PLOR
refinement
PROFFT
refinement
X-PLOR
data scaling
R-AXIS
II
phasing
X-PLOR
Trypsin inhibitors with rigid tripeptidyl aldehydes
1
N
N
2
N
N
3
N
N
4
N
N
1
ALA
56
A
ALA
39
HELX_P
1
CYS
58
A
CYS
41
5
1
3
1
ASP
165
A
ASP
145
HELX_P
1
ALA
171
A
ALA
151
1
2
7
1
VAL
231
A
VAL
209
HELX_P
1
ALA
243
A
ALA
221
5
3
13
disulf
2.092
1
CYS
22
A
SG
CYS
7
1_555
1
CYS
157
A
SG
CYS
137
1_555
disulf
2.076
1
CYS
42
A
SG
CYS
25
1_555
1
CYS
58
A
SG
CYS
41
1_555
disulf
2.013
1
CYS
128
A
SG
CYS
109
1_555
1
CYS
232
A
SG
CYS
210
1_555
disulf
2.002
1
CYS
136
A
SG
CYS
116
1_555
1
CYS
201
A
SG
CYS
183
1_555
disulf
2.041
1
CYS
168
A
SG
CYS
148
1_555
1
CYS
182
A
SG
CYS
162
1_555
disulf
2.065
1
CYS
191
A
SG
CYS
173
1_555
1
CYS
220
A
SG
CYS
197
1_555
metalc
2.188
1
GLU
70
A
OE1
GLU
52
1_555
1
CA
701
B
CA
CA
1_555
metalc
2.438
1
ASN
72
A
O
ASN
54
1_555
1
CA
701
B
CA
CA
1_555
metalc
2.293
1
VAL
75
A
O
VAL
57
1_555
1
CA
701
B
CA
CA
1_555
metalc
2.635
1
GLU
80
A
OE2
GLU
62
1_555
1
CA
701
B
CA
CA
1_555
metalc
2.438
1
HOH
409
D
O
HOH
1_555
1
CA
701
B
CA
CA
1_555
metalc
2.540
1
HOH
574
D
O
HOH
1_555
1
CA
701
B
CA
CA
1_555
HYDROLASE/HYDROLASE INHIBITOR
SERINE PROTEASE, HYDROLASE-HYDROLASE INHIBITOR complex
TRY1_BOVIN
UNP
1
1
P00760
FIFLALLGAAVAFPVDDDDKIVGGYTCGANTVPYQVSLNSGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVEG
NEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKA
PILSDSSCKSAYPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI
ASN
21
243
1YYY
16
245
P00760
1
1
1
223
7
6
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
1
GLN
81
A
GLN
63
1
SER
84
A
SER
66
1
GLN
64
A
GLN
47
1
LEU
67
A
LEU
50
1
GLN
30
A
GLN
15
1
ASN
34
A
ASN
19
1
HIS
40
A
HIS
23
1
ASN
48
A
ASN
31
1
TRP
51
A
TRP
34
1
SER
54
A
SER
37
1
MET
104
A
MET
86
1
LEU
108
A
LEU
90
1
ALA
85
A
ALA
67
1
VAL
90
A
VAL
72
1
LYS
156
A
LYS
136
1
PRO
161
A
PRO
141
1
GLN
135
A
GLN
115
1
GLY
140
A
GLY
120
1
PRO
198
A
PRO
180
1
CYS
201
A
CYS
183
1
LYS
204
A
LYS
186
1
TRP
215
A
TRP
193
1
GLY
226
A
GLY
204
1
LYS
230
A
LYS
208
1
MET
180
A
MET
160
1
ALA
183
A
ALA
163
BINDING SITE FOR RESIDUE CA 1 701
1
CA
701
Software
6
BINDING SITE FOR RESIDUE 0KV 1 1
1
0KV
1
Software
18
ACTIVE SITE OF TRYPSIN
Author
3
1
GLU
70
A
GLU
52
6
1_555
1
ASN
72
A
ASN
54
6
1_555
1
VAL
75
A
VAL
57
6
1_555
1
GLU
80
A
GLU
62
6
1_555
1
HOH
409
D
HOH
6
1_555
1
HOH
574
D
HOH
6
1_555
1
HIS
57
A
HIS
40
18
1_555
1
LEU
99
A
LEU
81
18
1_555
1
ASP
189
A
ASP
171
18
1_555
1
SER
190
A
SER
172
18
1_555
1
CYS
191
A
CYS
173
18
1_555
1
GLN
192
A
GLN
174
18
1_555
1
GLY
193
A
GLY
175
18
1_555
1
SER
195
A
SER
177
18
1_555
1
SER
214
A
SER
192
18
1_555
1
TRP
215
A
TRP
193
18
1_555
1
GLY
216
A
GLY
194
18
1_555
1
SER
217
A
SER
195
18
1_555
1
GLY
219
A
GLY
196
18
1_555
1
GLY
226
A
GLY
204
18
1_555
1
HOH
412
D
HOH
18
1_555
1
HOH
434
D
HOH
18
1_555
1
HOH
464
D
HOH
18
1_555
1
HOH
554
D
HOH
18
1_555
1
HIS
57
A
HIS
40
3
1_555
1
ASP
102
A
ASP
84
3
1_555
1
SER
195
A
SER
177
3
1_555
19
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