0.015684 0.000000 0.000000 0.000000 0.015838 0.000000 0.000000 0.000000 0.014432 0.00000 0.00000 0.00000 Krishnan, R. Zhang, E. Hakansson, K. Arni, R.K. Tulinsky, A. Lim-Wilby, M.S.L. Levy, O.E. Semple, J.E. Brunck, T.K. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 63.760 63.140 69.290 C23 H34 N6 O5 S 506.618 2-{(3S)-3-[(benzylsulfonyl)amino]-2-oxopiperidin-1-yl}-N-{(2S)-1-[(3S)-1-carbamimidoylpiperidin-3-yl]-3-oxopropan-2-yl}acetamide CVS1695 peptide-like C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Ca 2 40.078 CALCIUM ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Biochemistry BICHAW 0033 0006-2960 37 12094 12103 10.1021/bi980840e 9724521 Highly selective mechanism-based thrombin inhibitors: structures of thrombin and trypsin inhibited with rigid peptidyl aldehydes. 1998 10.2210/pdb1yyy/pdb pdb_00001yyy 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 300 1 IMAGE PLATE 1995-09 RIGAKU NI FILTER M x-ray 1 1.5418 1.0 1.5418 23324.287 TRYPSIN 3.4.21.4 1 nat polymer 40.078 CALCIUM ION 1 syn non-polymer 506.618 2-{(3S)-3-[(benzylsulfonyl)amino]-2-oxopiperidin-1-yl}-N-{(2S)-1-[(3S)-1-carbamimidoylpiperidin-3-yl]-3-oxopropan-2-yl}acetamide 1 syn non-polymer 18.015 water 157 nat water TRP-CVS1695 no no IVGGYTCGANTVPYQVSLNSGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSNT LNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNM FCAGYLEGGKDSCQGDSGGPVVCSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIASN IVGGYTCGANTVPYQVSLNSGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSNT LNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNM FCAGYLEGGKDSCQGDSGGPVVCSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIASN 1 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n cattle Bos sample 9913 Bos taurus 1 2.99 58.85 7.5 pH 7.5 database_2 pdbx_database_status pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn struct_site repository Initial release Version format compliance Atomic model Database references Derived calculations Non-polymer description Structure summary Version format compliance Other Database references Derived calculations Other Refinement description 1 0 1999-06-08 1 1 2008-03-24 1 2 2011-07-13 1 3 2012-12-12 1 4 2023-08-09 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y BNL 1998-06-03 REL CA CALCIUM ION 0KV 2-{(3S)-3-[(benzylsulfonyl)amino]-2-oxopiperidin-1-yl}-N-{(2S)-1-[(3S)-1-carbamimidoylpiperidin-3-yl]-3-oxopropan-2-yl}acetamide HOH water THE ACTIVE SITE INHIBITOR IS IN ITS S CHIRAL FORM. THE ACTIVE SITE SER 195 IS CLOSE TO THE CARBONYL CARBON (C3) OF THE ALDEHYDE GROUP OF THE INHIBITOR FORMING A TRANSITION-STATE COMPLEX. 1PPC PDB ENTRY 1PPC PDB experimental model Inhibitor 2-{(3S)-3-[(benzylsulfonyl)amino]-2-oxopiperidin-1-yl}-N-{(2S)-1-[(3S)-1-carbamimidoylpiperidin-3-yl]-3-oxopropan-2-yl}acetamide Peptide-like CA 701 2 CA CA 701 1 0IV 1 3 0KV 0KV 1 1 HOH 401 4 HOH HOH 401 1 HOH 402 4 HOH HOH 402 1 HOH 403 4 HOH HOH 403 1 HOH 404 4 HOH HOH 404 1 HOH 405 4 HOH HOH 405 1 HOH 406 4 HOH HOH 406 1 HOH 407 4 HOH HOH 407 1 HOH 408 4 HOH HOH 408 1 HOH 409 4 HOH HOH 409 1 HOH 410 4 HOH HOH 410 1 HOH 411 4 HOH HOH 411 1 HOH 412 4 HOH HOH 412 1 HOH 413 4 HOH HOH 413 1 HOH 414 4 HOH HOH 414 1 HOH 415 4 HOH HOH 415 1 HOH 416 4 HOH HOH 416 1 HOH 417 4 HOH HOH 417 1 HOH 418 4 HOH HOH 418 1 HOH 419 4 HOH HOH 419 1 HOH 420 4 HOH HOH 420 1 HOH 421 4 HOH HOH 421 1 HOH 422 4 HOH HOH 422 1 HOH 423 4 HOH HOH 423 1 HOH 424 4 HOH HOH 424 1 HOH 425 4 HOH HOH 425 1 HOH 426 4 HOH HOH 426 1 HOH 427 4 HOH HOH 427 1 HOH 428 4 HOH HOH 428 1 HOH 429 4 HOH HOH 429 1 HOH 430 4 HOH HOH 430 1 HOH 431 4 HOH HOH 431 1 HOH 432 4 HOH HOH 432 1 HOH 433 4 HOH HOH 433 1 HOH 434 4 HOH HOH 434 1 HOH 435 4 HOH HOH 435 1 HOH 436 4 HOH HOH 436 1 HOH 437 4 HOH HOH 437 1 HOH 438 4 HOH HOH 438 1 HOH 439 4 HOH HOH 439 1 HOH 440 4 HOH HOH 440 1 HOH 441 4 HOH HOH 441 1 HOH 442 4 HOH HOH 442 1 HOH 443 4 HOH HOH 443 1 HOH 444 4 HOH HOH 444 1 HOH 445 4 HOH HOH 445 1 HOH 446 4 HOH HOH 446 1 HOH 447 4 HOH HOH 447 1 HOH 448 4 HOH HOH 448 1 HOH 449 4 HOH HOH 449 1 HOH 451 4 HOH HOH 451 1 HOH 452 4 HOH HOH 452 1 HOH 453 4 HOH HOH 453 1 HOH 454 4 HOH HOH 454 1 HOH 455 4 HOH HOH 455 1 HOH 456 4 HOH HOH 456 1 HOH 457 4 HOH HOH 457 1 HOH 458 4 HOH HOH 458 1 HOH 460 4 HOH HOH 460 1 HOH 461 4 HOH HOH 461 1 HOH 462 4 HOH HOH 462 1 HOH 463 4 HOH HOH 463 1 HOH 464 4 HOH HOH 464 1 HOH 466 4 HOH HOH 466 1 HOH 467 4 HOH HOH 467 1 HOH 468 4 HOH HOH 468 1 HOH 469 4 HOH HOH 469 1 HOH 470 4 HOH HOH 470 1 HOH 471 4 HOH HOH 471 1 HOH 473 4 HOH HOH 473 1 HOH 474 4 HOH HOH 474 1 HOH 475 4 HOH HOH 475 1 HOH 476 4 HOH HOH 476 1 HOH 478 4 HOH HOH 478 1 HOH 481 4 HOH HOH 481 1 HOH 483 4 HOH HOH 483 1 HOH 486 4 HOH HOH 486 1 HOH 487 4 HOH HOH 487 1 HOH 490 4 HOH HOH 490 1 HOH 491 4 HOH HOH 491 1 HOH 493 4 HOH HOH 493 1 HOH 494 4 HOH HOH 494 1 HOH 496 4 HOH HOH 496 1 HOH 497 4 HOH HOH 497 1 HOH 498 4 HOH HOH 498 1 HOH 499 4 HOH HOH 499 1 HOH 500 4 HOH HOH 500 1 HOH 501 4 HOH HOH 501 1 HOH 502 4 HOH HOH 502 1 HOH 503 4 HOH HOH 503 1 HOH 504 4 HOH HOH 504 1 HOH 505 4 HOH HOH 505 1 HOH 506 4 HOH HOH 506 1 HOH 507 4 HOH HOH 507 1 HOH 508 4 HOH HOH 508 1 HOH 509 4 HOH HOH 509 1 HOH 510 4 HOH HOH 510 1 HOH 511 4 HOH HOH 511 1 HOH 512 4 HOH HOH 512 1 HOH 514 4 HOH HOH 514 1 HOH 515 4 HOH HOH 515 1 HOH 516 4 HOH HOH 516 1 HOH 517 4 HOH HOH 517 1 HOH 521 4 HOH HOH 521 1 HOH 522 4 HOH HOH 522 1 HOH 525 4 HOH HOH 525 1 HOH 526 4 HOH HOH 526 1 HOH 527 4 HOH HOH 527 1 HOH 528 4 HOH HOH 528 1 HOH 530 4 HOH HOH 530 1 HOH 532 4 HOH HOH 532 1 HOH 534 4 HOH HOH 534 1 HOH 535 4 HOH HOH 535 1 HOH 536 4 HOH HOH 536 1 HOH 539 4 HOH HOH 539 1 HOH 540 4 HOH HOH 540 1 HOH 541 4 HOH HOH 541 1 HOH 542 4 HOH HOH 542 1 HOH 547 4 HOH HOH 547 1 HOH 550 4 HOH HOH 550 1 HOH 553 4 HOH HOH 553 1 HOH 554 4 HOH HOH 554 1 HOH 555 4 HOH HOH 555 1 HOH 556 4 HOH HOH 556 1 HOH 558 4 HOH HOH 558 1 HOH 559 4 HOH HOH 559 1 HOH 561 4 HOH HOH 561 1 HOH 562 4 HOH HOH 562 1 HOH 567 4 HOH HOH 567 1 HOH 569 4 HOH HOH 569 1 HOH 570 4 HOH HOH 570 1 HOH 573 4 HOH HOH 573 1 HOH 574 4 HOH HOH 574 1 HOH 576 4 HOH HOH 576 1 HOH 577 4 HOH HOH 577 1 HOH 583 4 HOH HOH 583 1 HOH 584 4 HOH HOH 584 1 HOH 585 4 HOH HOH 585 1 HOH 587 4 HOH HOH 587 1 HOH 588 4 HOH HOH 588 1 HOH 589 4 HOH HOH 589 1 HOH 591 4 HOH HOH 591 1 HOH 592 4 HOH HOH 592 1 HOH 594 4 HOH HOH 594 1 HOH 595 4 HOH HOH 595 1 HOH 596 4 HOH HOH 596 1 HOH 598 4 HOH HOH 598 1 HOH 602 4 HOH HOH 602 1 HOH 603 4 HOH HOH 603 1 HOH 610 4 HOH HOH 610 1 HOH 612 4 HOH HOH 612 1 HOH 614 4 HOH HOH 614 1 HOH 617 4 HOH HOH 617 1 HOH 623 4 HOH HOH 623 1 HOH 626 4 HOH HOH 626 1 HOH 627 4 HOH HOH 627 1 HOH 634 4 HOH HOH 634 1 HOH 644 4 HOH HOH 644 1 ILE 16 n 1 ILE 16 1 VAL 17 n 2 VAL 17 1 GLY 18 n 3 GLY 18 1 GLY 19 n 4 GLY 19 1 TYR 20 n 5 TYR 20 1 THR 21 n 6 THR 21 1 CYS 22 n 7 CYS 22 1 GLY 23 n 8 GLY 23 1 ALA 24 n 9 ALA 24 1 ASN 25 n 10 ASN 25 1 THR 26 n 11 THR 26 1 VAL 27 n 12 VAL 27 1 PRO 28 n 13 PRO 28 1 TYR 29 n 14 TYR 29 1 GLN 30 n 15 GLN 30 1 VAL 31 n 16 VAL 31 1 SER 32 n 17 SER 32 1 LEU 33 n 18 LEU 33 1 ASN 34 n 19 ASN 34 1 SER 37 n 20 SER 37 1 GLY 38 n 21 GLY 38 1 TYR 39 n 22 TYR 39 1 HIS 40 n 23 HIS 40 1 PHE 41 n 24 PHE 41 1 CYS 42 n 25 CYS 42 1 GLY 43 n 26 GLY 43 1 GLY 44 n 27 GLY 44 1 SER 45 n 28 SER 45 1 LEU 46 n 29 LEU 46 1 ILE 47 n 30 ILE 47 1 ASN 48 n 31 ASN 48 1 SER 49 n 32 SER 49 1 GLN 50 n 33 GLN 50 1 TRP 51 n 34 TRP 51 1 VAL 52 n 35 VAL 52 1 VAL 53 n 36 VAL 53 1 SER 54 n 37 SER 54 1 ALA 55 n 38 ALA 55 1 ALA 56 n 39 ALA 56 1 HIS 57 n 40 HIS 57 1 CYS 58 n 41 CYS 58 1 TYR 59 n 42 TYR 59 1 LYS 60 n 43 LYS 60 1 SER 61 n 44 SER 61 1 GLY 62 n 45 GLY 62 1 ILE 63 n 46 ILE 63 1 GLN 64 n 47 GLN 64 1 VAL 65 n 48 VAL 65 1 ARG 66 n 49 ARG 66 1 LEU 67 n 50 LEU 67 1 GLY 69 n 51 GLY 69 1 GLU 70 n 52 GLU 70 1 ASP 71 n 53 ASP 71 1 ASN 72 n 54 ASN 72 1 ILE 73 n 55 ILE 73 1 ASN 74 n 56 ASN 74 1 VAL 75 n 57 VAL 75 1 VAL 76 n 58 VAL 76 1 GLU 77 n 59 GLU 77 1 GLY 78 n 60 GLY 78 1 ASN 79 n 61 ASN 79 1 GLU 80 n 62 GLU 80 1 GLN 81 n 63 GLN 81 1 PHE 82 n 64 PHE 82 1 ILE 83 n 65 ILE 83 1 SER 84 n 66 SER 84 1 ALA 85 n 67 ALA 85 1 SER 86 n 68 SER 86 1 LYS 87 n 69 LYS 87 1 SER 88 n 70 SER 88 1 ILE 89 n 71 ILE 89 1 VAL 90 n 72 VAL 90 1 HIS 91 n 73 HIS 91 1 PRO 92 n 74 PRO 92 1 SER 93 n 75 SER 93 1 TYR 94 n 76 TYR 94 1 ASN 95 n 77 ASN 95 1 SER 96 n 78 SER 96 1 ASN 97 n 79 ASN 97 1 THR 98 n 80 THR 98 1 LEU 99 n 81 LEU 99 1 ASN 100 n 82 ASN 100 1 ASN 101 n 83 ASN 101 1 ASP 102 n 84 ASP 102 1 ILE 103 n 85 ILE 103 1 MET 104 n 86 MET 104 1 LEU 105 n 87 LEU 105 1 ILE 106 n 88 ILE 106 1 LYS 107 n 89 LYS 107 1 LEU 108 n 90 LEU 108 1 LYS 109 n 91 LYS 109 1 SER 110 n 92 SER 110 1 ALA 111 n 93 ALA 111 1 ALA 112 n 94 ALA 112 1 SER 113 n 95 SER 113 1 LEU 114 n 96 LEU 114 1 ASN 115 n 97 ASN 115 1 SER 116 n 98 SER 116 1 ARG 117 n 99 ARG 117 1 VAL 118 n 100 VAL 118 1 ALA 119 n 101 ALA 119 1 SER 120 n 102 SER 120 1 ILE 121 n 103 ILE 121 1 SER 122 n 104 SER 122 1 LEU 123 n 105 LEU 123 1 PRO 124 n 106 PRO 124 1 THR 125 n 107 THR 125 1 SER 127 n 108 SER 127 1 CYS 128 n 109 CYS 128 1 ALA 129 n 110 ALA 129 1 SER 130 n 111 SER 130 1 ALA 132 n 112 ALA 132 1 GLY 133 n 113 GLY 133 1 THR 134 n 114 THR 134 1 GLN 135 n 115 GLN 135 1 CYS 136 n 116 CYS 136 1 LEU 137 n 117 LEU 137 1 ILE 138 n 118 ILE 138 1 SER 139 n 119 SER 139 1 GLY 140 n 120 GLY 140 1 TRP 141 n 121 TRP 141 1 GLY 142 n 122 GLY 142 1 ASN 143 n 123 ASN 143 1 THR 144 n 124 THR 144 1 LYS 145 n 125 LYS 145 1 SER 146 n 126 SER 146 1 SER 147 n 127 SER 147 1 GLY 148 n 128 GLY 148 1 THR 149 n 129 THR 149 1 SER 150 n 130 SER 150 1 TYR 151 n 131 TYR 151 1 PRO 152 n 132 PRO 152 1 ASP 153 n 133 ASP 153 1 VAL 154 n 134 VAL 154 1 LEU 155 n 135 LEU 155 1 LYS 156 n 136 LYS 156 1 CYS 157 n 137 CYS 157 1 LEU 158 n 138 LEU 158 1 LYS 159 n 139 LYS 159 1 ALA 160 n 140 ALA 160 1 PRO 161 n 141 PRO 161 1 ILE 162 n 142 ILE 162 1 LEU 163 n 143 LEU 163 1 SER 164 n 144 SER 164 1 ASP 165 n 145 ASP 165 1 SER 166 n 146 SER 166 1 SER 167 n 147 SER 167 1 CYS 168 n 148 CYS 168 1 LYS 169 n 149 LYS 169 1 SER 170 n 150 SER 170 1 ALA 171 n 151 ALA 171 1 TYR 172 n 152 TYR 172 1 PRO 173 n 153 PRO 173 1 GLY 174 n 154 GLY 174 1 GLN 175 n 155 GLN 175 1 ILE 176 n 156 ILE 176 1 THR 177 n 157 THR 177 1 SER 178 n 158 SER 178 1 ASN 179 n 159 ASN 179 1 MET 180 n 160 MET 180 1 PHE 181 n 161 PHE 181 1 CYS 182 n 162 CYS 182 1 ALA 183 n 163 ALA 183 1 GLY 184 n 164 A GLY 184 1 TYR 184 n 165 TYR 184 1 LEU 185 n 166 LEU 185 1 GLU 186 n 167 GLU 186 1 GLY 187 n 168 GLY 187 1 GLY 188 n 169 A GLY 188 1 LYS 188 n 170 LYS 188 1 ASP 189 n 171 ASP 189 1 SER 190 n 172 SER 190 1 CYS 191 n 173 CYS 191 1 GLN 192 n 174 GLN 192 1 GLY 193 n 175 GLY 193 1 ASP 194 n 176 ASP 194 1 SER 195 n 177 SER 195 1 GLY 196 n 178 GLY 196 1 GLY 197 n 179 GLY 197 1 PRO 198 n 180 PRO 198 1 VAL 199 n 181 VAL 199 1 VAL 200 n 182 VAL 200 1 CYS 201 n 183 CYS 201 1 SER 202 n 184 SER 202 1 GLY 203 n 185 GLY 203 1 LYS 204 n 186 LYS 204 1 LEU 209 n 187 LEU 209 1 GLN 210 n 188 GLN 210 1 GLY 211 n 189 GLY 211 1 ILE 212 n 190 ILE 212 1 VAL 213 n 191 VAL 213 1 SER 214 n 192 SER 214 1 TRP 215 n 193 TRP 215 1 GLY 216 n 194 GLY 216 1 SER 217 n 195 SER 217 1 GLY 219 n 196 GLY 219 1 CYS 220 n 197 CYS 220 1 ALA 221 n 198 A ALA 221 1 GLN 221 n 199 GLN 221 1 LYS 222 n 200 LYS 222 1 ASN 223 n 201 ASN 223 1 LYS 224 n 202 LYS 224 1 PRO 225 n 203 PRO 225 1 GLY 226 n 204 GLY 226 1 VAL 227 n 205 VAL 227 1 TYR 228 n 206 TYR 228 1 THR 229 n 207 THR 229 1 LYS 230 n 208 LYS 230 1 VAL 231 n 209 VAL 231 1 CYS 232 n 210 CYS 232 1 ASN 233 n 211 ASN 233 1 TYR 234 n 212 TYR 234 1 VAL 235 n 213 VAL 235 1 SER 236 n 214 SER 236 1 TRP 237 n 215 TRP 237 1 ILE 238 n 216 ILE 238 1 LYS 239 n 217 LYS 239 1 GLN 240 n 218 GLN 240 1 THR 241 n 219 THR 241 1 ILE 242 n 220 ILE 242 1 ALA 243 n 221 ALA 243 1 SER 244 n 222 SER 244 1 ASN 245 n 223 ASN 245 1 author_and_software_defined_assembly PISA 1 monomeric 1 GLU 70 A OE1 GLU 52 1_555 1 CA 701 B CA CA 1_555 1 ASN 72 A O ASN 54 1_555 85.6 1 GLU 70 A OE1 GLU 52 1_555 1 CA 701 B CA CA 1_555 1 VAL 75 A O VAL 57 1_555 162.0 1 ASN 72 A O ASN 54 1_555 1 CA 701 B CA CA 1_555 1 VAL 75 A O VAL 57 1_555 87.2 1 GLU 70 A OE1 GLU 52 1_555 1 CA 701 B CA CA 1_555 1 GLU 80 A OE2 GLU 62 1_555 102.5 1 ASN 72 A O ASN 54 1_555 1 CA 701 B CA CA 1_555 1 GLU 80 A OE2 GLU 62 1_555 156.4 1 VAL 75 A O VAL 57 1_555 1 CA 701 B CA CA 1_555 1 GLU 80 A OE2 GLU 62 1_555 90.6 1 GLU 70 A OE1 GLU 52 1_555 1 CA 701 B CA CA 1_555 1 HOH 409 D O HOH 1_555 78.7 1 ASN 72 A O ASN 54 1_555 1 CA 701 B CA CA 1_555 1 HOH 409 D O HOH 1_555 107.6 1 VAL 75 A O VAL 57 1_555 1 CA 701 B CA CA 1_555 1 HOH 409 D O HOH 1_555 87.8 1 GLU 80 A OE2 GLU 62 1_555 1 CA 701 B CA CA 1_555 1 HOH 409 D O HOH 1_555 95.8 1 GLU 70 A OE1 GLU 52 1_555 1 CA 701 B CA CA 1_555 1 HOH 574 D O HOH 1_555 87.9 1 ASN 72 A O ASN 54 1_555 1 CA 701 B CA CA 1_555 1 HOH 574 D O HOH 1_555 84.3 1 VAL 75 A O VAL 57 1_555 1 CA 701 B CA CA 1_555 1 HOH 574 D O HOH 1_555 107.8 1 GLU 80 A OE2 GLU 62 1_555 1 CA 701 B CA CA 1_555 1 HOH 574 D O HOH 1_555 74.0 1 HOH 409 D O HOH 1_555 1 CA 701 B CA CA 1_555 1 HOH 574 D O HOH 1_555 161.1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 O GLN 81 A O GLN 63 1 N LEU 67 A N LEU 50 1 O GLN 64 A O GLN 47 1 N ASN 34 A N ASN 19 1 O VAL 31 A O VAL 16 1 N GLY 44 A N GLY 27 1 O SER 45 A O SER 28 1 N VAL 53 A N VAL 36 1 O VAL 52 A O VAL 35 1 N ILE 106 A N ILE 88 1 O LEU 105 A O LEU 87 1 N ILE 89 A N ILE 71 1 O LYS 156 A O LYS 136 1 N GLY 140 A N GLY 120 1 O LEU 137 A O LEU 117 1 N VAL 200 A N VAL 182 1 O VAL 199 A O VAL 181 1 N GLY 211 A N GLY 189 1 O ILE 212 A O ILE 190 1 N THR 229 A N THR 207 1 O GLY 226 A O GLY 204 1 N ALA 183 A N ALA 163 1 1 C7 0KV 1 C C7 0KV 1 1 N 1 1 C8 0KV 1 C C8 0KV 1 1 N 1 1 C9 0KV 1 C C9 0KV 1 1 N 1 1 C10 0KV 1 C C10 0KV 1 1 N 1 1 C11 0KV 1 C C11 0KV 1 1 N 1 1 C12 0KV 1 C C12 0KV 1 1 N 1 1 C13 0KV 1 C C13 0KV 1 1 N 1 1 1 OG C3 SER 0KV 195 1 1.70 1 1 1 OG O3 SER 0KV 195 1 2.18 1 1 GLY 44 10.94 1 1 ASN 48 -10.03 1 1 GLU 77 15.20 1 1 ALA 111 10.05 1 1 ARG 117 18.93 1 1 SER 120 10.70 1 1 ALA 129 -10.57 1 1 GLN 135 -10.89 1 1 LEU 155 -11.98 1 1 GLU 186 -11.13 1 1 GLY 193 10.56 1 1 SER 195 -10.27 1 1 LYS 204 -20.15 1 1 VAL 213 -14.30 1 1 GLY 216 -11.44 1 1 TYR 29 0.062 SIDE CHAIN 1 1 ARG 117 0.109 SIDE CHAIN 1 -9.79 1.60 110.90 101.11 1 1 1 CG1 CB CG2 VAL VAL VAL 53 53 53 N 1 -4.05 0.60 121.00 116.95 1 1 1 CB CG CD1 TYR TYR TYR 59 59 59 N 1 8.35 0.50 120.30 128.65 1 1 1 NE CZ NH1 ARG ARG ARG 66 66 66 N 1 -5.16 0.50 120.30 115.14 1 1 1 NE CZ NH2 ARG ARG ARG 66 66 66 N 1 -6.53 0.60 121.00 114.47 1 1 1 CB CG CD2 TYR TYR TYR 94 94 94 N 1 10.36 1.60 100.20 110.56 1 1 1 CG SD CE MET MET MET 104 104 104 N 1 -16.48 2.00 110.40 93.92 1 1 1 CB CA C ARG ARG ARG 117 117 117 N 1 3.27 0.50 120.30 123.57 1 1 1 NE CZ NH1 ARG ARG ARG 117 117 117 N 1 -7.38 0.50 120.30 112.92 1 1 1 NE CZ NH2 ARG ARG ARG 117 117 117 N 1 13.52 1.90 110.10 123.62 1 1 1 CB CA C SER SER SER 130 130 130 N 1 -12.45 2.00 110.40 97.95 1 1 1 CB CA C LYS LYS LYS 145 145 145 N 1 -4.53 0.60 121.00 116.47 1 1 1 CB CG CD1 TYR TYR TYR 151 151 151 N 1 5.80 0.90 118.30 124.10 1 1 1 CB CG OD1 ASP ASP ASP 153 153 153 N 1 -8.59 0.90 118.30 109.71 1 1 1 CB CG OD2 ASP ASP ASP 153 153 153 N 1 12.22 0.90 118.30 130.52 1 1 1 CB CG OD1 ASP ASP ASP 165 165 165 N 1 1 ASP 71 -117.05 -76.47 1 1 ASN 79 93.75 -7.00 1 1 GLN 192 -39.47 124.43 1 1 SER 195 -47.53 150.33 1 1 SER 214 -128.53 -75.48 1 1 ASN 223 49.70 22.56 17.10 0.157 2.1 7.0 13035 72 1 THROUGHOUT 3.0 MOLECULAR REPLACEMENT PDB ENTRY 1PPC 0.2 7.0 2.1 7.0 157 1815 29 0 1629 0.015 0.020 0.035 0.030 0.055 0.050 1.1 1.0 1.8 1.5 2.6 2.0 3.8 2.5 0.027 0.030 0.15 0.20 0.22 0.60 0.31 0.60 0.28 0.60 4. 3 20. 15 30. 20 2.1 1YYY 13609 2.0 0.043 0.12 1 15.4 2.00 76 0.061 2.1 2.3 2.5 0.25 1 2. 52 data collection R-AXIS II data reduction R-AXIS II model building X-PLOR refinement PROFFT refinement X-PLOR data scaling R-AXIS II phasing X-PLOR Trypsin inhibitors with rigid tripeptidyl aldehydes 1 N N 2 N N 3 N N 4 N N 1 ALA 56 A ALA 39 HELX_P 1 CYS 58 A CYS 41 5 1 3 1 ASP 165 A ASP 145 HELX_P 1 ALA 171 A ALA 151 1 2 7 1 VAL 231 A VAL 209 HELX_P 1 ALA 243 A ALA 221 5 3 13 disulf 2.092 1 CYS 22 A SG CYS 7 1_555 1 CYS 157 A SG CYS 137 1_555 disulf 2.076 1 CYS 42 A SG CYS 25 1_555 1 CYS 58 A SG CYS 41 1_555 disulf 2.013 1 CYS 128 A SG CYS 109 1_555 1 CYS 232 A SG CYS 210 1_555 disulf 2.002 1 CYS 136 A SG CYS 116 1_555 1 CYS 201 A SG CYS 183 1_555 disulf 2.041 1 CYS 168 A SG CYS 148 1_555 1 CYS 182 A SG CYS 162 1_555 disulf 2.065 1 CYS 191 A SG CYS 173 1_555 1 CYS 220 A SG CYS 197 1_555 metalc 2.188 1 GLU 70 A OE1 GLU 52 1_555 1 CA 701 B CA CA 1_555 metalc 2.438 1 ASN 72 A O ASN 54 1_555 1 CA 701 B CA CA 1_555 metalc 2.293 1 VAL 75 A O VAL 57 1_555 1 CA 701 B CA CA 1_555 metalc 2.635 1 GLU 80 A OE2 GLU 62 1_555 1 CA 701 B CA CA 1_555 metalc 2.438 1 HOH 409 D O HOH 1_555 1 CA 701 B CA CA 1_555 metalc 2.540 1 HOH 574 D O HOH 1_555 1 CA 701 B CA CA 1_555 HYDROLASE/HYDROLASE INHIBITOR SERINE PROTEASE, HYDROLASE-HYDROLASE INHIBITOR complex TRY1_BOVIN UNP 1 1 P00760 FIFLALLGAAVAFPVDDDDKIVGGYTCGANTVPYQVSLNSGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVEG NEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKA PILSDSSCKSAYPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI ASN 21 243 1YYY 16 245 P00760 1 1 1 223 7 6 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel 1 GLN 81 A GLN 63 1 SER 84 A SER 66 1 GLN 64 A GLN 47 1 LEU 67 A LEU 50 1 GLN 30 A GLN 15 1 ASN 34 A ASN 19 1 HIS 40 A HIS 23 1 ASN 48 A ASN 31 1 TRP 51 A TRP 34 1 SER 54 A SER 37 1 MET 104 A MET 86 1 LEU 108 A LEU 90 1 ALA 85 A ALA 67 1 VAL 90 A VAL 72 1 LYS 156 A LYS 136 1 PRO 161 A PRO 141 1 GLN 135 A GLN 115 1 GLY 140 A GLY 120 1 PRO 198 A PRO 180 1 CYS 201 A CYS 183 1 LYS 204 A LYS 186 1 TRP 215 A TRP 193 1 GLY 226 A GLY 204 1 LYS 230 A LYS 208 1 MET 180 A MET 160 1 ALA 183 A ALA 163 BINDING SITE FOR RESIDUE CA 1 701 1 CA 701 Software 6 BINDING SITE FOR RESIDUE 0KV 1 1 1 0KV 1 Software 18 ACTIVE SITE OF TRYPSIN Author 3 1 GLU 70 A GLU 52 6 1_555 1 ASN 72 A ASN 54 6 1_555 1 VAL 75 A VAL 57 6 1_555 1 GLU 80 A GLU 62 6 1_555 1 HOH 409 D HOH 6 1_555 1 HOH 574 D HOH 6 1_555 1 HIS 57 A HIS 40 18 1_555 1 LEU 99 A LEU 81 18 1_555 1 ASP 189 A ASP 171 18 1_555 1 SER 190 A SER 172 18 1_555 1 CYS 191 A CYS 173 18 1_555 1 GLN 192 A GLN 174 18 1_555 1 GLY 193 A GLY 175 18 1_555 1 SER 195 A SER 177 18 1_555 1 SER 214 A SER 192 18 1_555 1 TRP 215 A TRP 193 18 1_555 1 GLY 216 A GLY 194 18 1_555 1 SER 217 A SER 195 18 1_555 1 GLY 219 A GLY 196 18 1_555 1 GLY 226 A GLY 204 18 1_555 1 HOH 412 D HOH 18 1_555 1 HOH 434 D HOH 18 1_555 1 HOH 464 D HOH 18 1_555 1 HOH 554 D HOH 18 1_555 1 HIS 57 A HIS 40 3 1_555 1 ASP 102 A ASP 84 3 1_555 1 SER 195 A SER 177 3 1_555 19 P 21 21 21