0.013523 0.000000 0.000000 0.000000 0.013523 0.000000 0.000000 0.000000 0.006748 0.00000 0.00000 0.00000 Eathiraj, S. Pan, X. Ritacco, C. Lambright, D.G. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 16 90.00 90.00 90.00 73.946 73.946 148.197 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C10 H17 N6 O13 P3 522.196 PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Mg 2 24.305 MAGNESIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 S C N 76 N C N 77 N O N 78 N C N 79 N C N 80 N C N 81 N O N 82 N N N 83 N O N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N N N 95 S C N 96 N C N 97 N O N 98 N C N 99 N C N 100 N C N 101 N O N 102 N O N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N N N 114 N C N 115 N C N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N P N 124 N O N 125 N O N 126 N O N 127 N N N 128 R P N 129 N O N 130 N O N 131 N O N 132 S P N 133 N O N 134 N O N 135 N O N 136 N C N 137 R C N 138 N O N 139 S C N 140 N O N 141 R C N 142 N O N 143 R C Y 144 N N Y 145 N C Y 146 N N Y 147 N C Y 148 N C N 149 N O Y 150 N N Y 151 N C N 152 N N Y 153 N N Y 154 N C N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N N N 173 S C N 174 N C N 175 N O N 176 N C Y 177 N C Y 178 N N Y 179 N C Y 180 N C Y 181 N N N 182 N O N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N O N 194 N H N 195 N H N 196 N N N 197 S C N 198 N C N 199 N O N 200 S C N 201 N C N 202 N C N 203 N C N 204 N O N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N N N 219 S C N 220 N C N 221 N O N 222 N C N 223 N C N 224 N C N 225 N C N 226 N O N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N N N 241 S C N 242 N C N 243 N O N 244 N C N 245 N C N 246 N C N 247 N C N 248 N N N 249 N O N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N N N 266 S C N 267 N C N 268 N O N 269 N C N 270 N C N 271 N S N 272 N C N 273 N O N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N MG N 286 N N N 287 S C N 288 N C N 289 N O N 290 N C Y 291 N C Y 292 N C Y 293 N C Y 294 N C Y 295 N C Y 296 N C N 297 N O N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N N N 310 S C N 311 N C N 312 N O N 313 N C N 314 N C N 315 N C N 316 N O N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N N N 327 S C N 328 N C N 329 N O N 330 N C N 331 N O N 332 N O N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N N N 341 S C N 342 N C N 343 N O N 344 R C N 345 N O N 346 N C N 347 N O N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N N N 358 S C N 359 N C N 360 N O N 361 N C Y 362 N C Y 363 N C Y 364 N C Y 365 N N Y 366 N C Y 367 N C Y 368 N C Y 369 N C Y 370 N C N 371 N O N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N N N 385 S C N 386 N C N 387 N O N 388 N C Y 389 N C Y 390 N C Y 391 N C Y 392 N C Y 393 N C Y 394 N C N 395 N O N 396 N O N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N N N 409 S C N 410 N C N 411 N O N 412 N C N 413 N C N 414 N C N 415 N O N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N doub N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N doub N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing Y 151 N sing Y 152 N sing Y 153 N doub N 154 N sing Y 155 N sing Y 156 N sing Y 157 N doub N 158 N doub Y 159 N sing Y 160 N sing N 161 N sing N 162 N sing Y 163 N doub N 164 N sing N 165 N sing Y 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N doub N 174 N sing N 175 N sing N 176 N sing N 177 N sing Y 178 N sing Y 179 N doub Y 180 N doub N 181 N sing Y 182 N sing N 183 N sing Y 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N doub N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N doub N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N doub N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N doub N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N doub N 282 N sing N 283 N sing N 284 N sing N 285 N sing Y 286 N doub Y 287 N sing Y 288 N sing N 289 N sing Y 290 N doub N 291 N sing Y 292 N doub N 293 N sing Y 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N doub N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N doub N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N doub N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N doub N 351 N sing N 352 N sing N 353 N sing N 354 N sing Y 355 N doub Y 356 N sing Y 357 N sing N 358 N sing Y 359 N doub Y 360 N sing Y 361 N sing N 362 N sing Y 363 N sing Y 364 N doub N 365 N sing Y 366 N doub N 367 N sing Y 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N doub N 379 N sing N 380 N sing N 381 N sing N 382 N sing Y 383 N doub Y 384 N sing Y 385 N sing N 386 N sing Y 387 N doub N 388 N sing Y 389 N doub N 390 N sing Y 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N doub N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing UK Nature NATUAS 0006 0028-0836 436 415 419 10.1038/nature03798 16034420 Structural basis of family-wide Rab GTPase recognition by rabenosyn-5. 2005 10.2210/pdb1yzk/pdb pdb_00001yzk 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 IMAGE PLATE 2003-06-05 MAR scanner 300 mm plate confocal blue optic device SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RUH3R 20752.410 Ras-related protein Rab-11A 1 man polymer 24.305 MAGNESIUM ION 1 syn non-polymer 522.196 PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER 1 syn non-polymer 18.015 water 219 nat water Rab-11, YL8 no no MGHHHHHHGSLVPRGSYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFI ETSALDSTNVEAAFQTILTEIYRI MGHHHHHHGSLVPRGSYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFI ETSALDSTNVEAAFQTILTEIYRI A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia sample RAB11A, RAB11 9606 Homo sapiens 562 Escherichia coli BL21 (DE3) Codon Plus-RIL Cells plasmid modified pET15b 1 2.70 54.01 VAPOR DIFFUSION, HANGING DROP 6.0 NaCl, Glycerol, MES, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 4K 277.0 exptl_crystal_grow chem_comp_atom chem_comp_bond database_2 pdbx_struct_conn_angle struct_conn struct_ref_seq_dif struct_site pdbx_initial_refinement_model repository Initial release Version format compliance Version format compliance Experimental preparation Data collection Database references Derived calculations Refinement description 1 0 2005-07-26 1 1 2008-04-30 1 2 2011-07-13 1 3 2018-01-31 1 4 2024-02-14 1 5 2024-04-03 _exptl_crystal_grow.temp _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2005-02-28 REL REL MG MAGNESIUM ION GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HOH water Polyalanine Rab5c Other experimental model MG 201 2 MG MG 201 A GNP 200 3 GNP GNP 200 A HOH 1 4 HOH HOH 202 A HOH 3 4 HOH HOH 203 A HOH 4 4 HOH HOH 204 A HOH 5 4 HOH HOH 205 A HOH 6 4 HOH HOH 206 A HOH 7 4 HOH HOH 207 A HOH 8 4 HOH HOH 208 A HOH 10 4 HOH HOH 209 A HOH 11 4 HOH HOH 210 A HOH 12 4 HOH HOH 211 A HOH 13 4 HOH HOH 212 A HOH 14 4 HOH HOH 213 A HOH 15 4 HOH HOH 214 A HOH 16 4 HOH HOH 215 A HOH 17 4 HOH HOH 216 A HOH 18 4 HOH HOH 217 A HOH 19 4 HOH HOH 218 A HOH 20 4 HOH HOH 219 A HOH 21 4 HOH HOH 220 A HOH 22 4 HOH HOH 221 A HOH 23 4 HOH HOH 222 A HOH 25 4 HOH HOH 223 A HOH 28 4 HOH HOH 224 A HOH 29 4 HOH HOH 225 A HOH 30 4 HOH HOH 226 A HOH 32 4 HOH HOH 227 A HOH 34 4 HOH HOH 228 A HOH 35 4 HOH HOH 229 A HOH 36 4 HOH HOH 230 A HOH 37 4 HOH HOH 231 A HOH 38 4 HOH HOH 232 A HOH 39 4 HOH HOH 233 A HOH 41 4 HOH HOH 234 A HOH 42 4 HOH HOH 235 A HOH 43 4 HOH HOH 236 A HOH 44 4 HOH HOH 237 A HOH 45 4 HOH HOH 238 A HOH 46 4 HOH HOH 239 A HOH 47 4 HOH HOH 240 A HOH 48 4 HOH HOH 241 A HOH 49 4 HOH HOH 242 A HOH 50 4 HOH HOH 243 A HOH 51 4 HOH HOH 244 A HOH 52 4 HOH HOH 245 A HOH 53 4 HOH HOH 246 A HOH 54 4 HOH HOH 247 A HOH 55 4 HOH HOH 248 A HOH 56 4 HOH HOH 249 A HOH 57 4 HOH HOH 250 A HOH 58 4 HOH HOH 251 A HOH 59 4 HOH HOH 252 A HOH 60 4 HOH HOH 253 A HOH 61 4 HOH HOH 254 A HOH 62 4 HOH HOH 255 A HOH 63 4 HOH HOH 256 A HOH 64 4 HOH HOH 257 A HOH 65 4 HOH HOH 258 A HOH 66 4 HOH HOH 259 A HOH 67 4 HOH HOH 260 A HOH 68 4 HOH HOH 261 A HOH 69 4 HOH HOH 262 A HOH 70 4 HOH HOH 263 A HOH 71 4 HOH HOH 264 A HOH 72 4 HOH HOH 265 A HOH 73 4 HOH HOH 266 A HOH 74 4 HOH HOH 267 A HOH 75 4 HOH HOH 268 A HOH 77 4 HOH HOH 269 A HOH 79 4 HOH HOH 270 A HOH 80 4 HOH HOH 271 A HOH 81 4 HOH HOH 272 A HOH 82 4 HOH HOH 273 A HOH 83 4 HOH HOH 274 A HOH 84 4 HOH HOH 275 A HOH 85 4 HOH HOH 276 A HOH 86 4 HOH HOH 277 A HOH 87 4 HOH HOH 278 A HOH 88 4 HOH HOH 279 A HOH 90 4 HOH HOH 280 A HOH 92 4 HOH HOH 281 A HOH 93 4 HOH HOH 282 A HOH 94 4 HOH HOH 283 A HOH 95 4 HOH HOH 284 A HOH 96 4 HOH HOH 285 A HOH 97 4 HOH HOH 286 A HOH 98 4 HOH HOH 287 A HOH 99 4 HOH HOH 288 A HOH 100 4 HOH HOH 289 A HOH 101 4 HOH HOH 290 A HOH 102 4 HOH HOH 291 A HOH 103 4 HOH HOH 292 A HOH 104 4 HOH HOH 293 A HOH 105 4 HOH HOH 294 A HOH 106 4 HOH HOH 295 A HOH 108 4 HOH HOH 296 A HOH 109 4 HOH HOH 297 A HOH 111 4 HOH HOH 298 A HOH 112 4 HOH HOH 299 A HOH 113 4 HOH HOH 300 A HOH 114 4 HOH HOH 301 A HOH 115 4 HOH HOH 302 A HOH 116 4 HOH HOH 303 A HOH 117 4 HOH HOH 304 A HOH 118 4 HOH HOH 305 A HOH 119 4 HOH HOH 306 A HOH 121 4 HOH HOH 307 A HOH 122 4 HOH HOH 308 A HOH 123 4 HOH HOH 309 A HOH 124 4 HOH HOH 310 A HOH 125 4 HOH HOH 311 A HOH 126 4 HOH HOH 312 A HOH 127 4 HOH HOH 313 A HOH 128 4 HOH HOH 314 A HOH 129 4 HOH HOH 315 A HOH 130 4 HOH HOH 316 A HOH 131 4 HOH HOH 317 A HOH 133 4 HOH HOH 318 A HOH 134 4 HOH HOH 319 A HOH 135 4 HOH HOH 320 A HOH 136 4 HOH HOH 321 A HOH 138 4 HOH HOH 322 A HOH 139 4 HOH HOH 323 A HOH 140 4 HOH HOH 324 A HOH 142 4 HOH HOH 325 A HOH 144 4 HOH HOH 326 A HOH 146 4 HOH HOH 327 A HOH 148 4 HOH HOH 328 A HOH 149 4 HOH HOH 329 A HOH 150 4 HOH HOH 330 A HOH 151 4 HOH HOH 331 A HOH 154 4 HOH HOH 332 A HOH 155 4 HOH HOH 333 A HOH 156 4 HOH HOH 334 A HOH 157 4 HOH HOH 335 A HOH 158 4 HOH HOH 336 A HOH 159 4 HOH HOH 337 A HOH 160 4 HOH HOH 338 A HOH 161 4 HOH HOH 339 A HOH 162 4 HOH HOH 340 A HOH 164 4 HOH HOH 341 A HOH 165 4 HOH HOH 342 A HOH 166 4 HOH HOH 343 A HOH 168 4 HOH HOH 344 A HOH 170 4 HOH HOH 345 A HOH 171 4 HOH HOH 346 A HOH 172 4 HOH HOH 347 A HOH 173 4 HOH HOH 348 A HOH 176 4 HOH HOH 349 A HOH 177 4 HOH HOH 350 A HOH 178 4 HOH HOH 351 A HOH 179 4 HOH HOH 352 A HOH 181 4 HOH HOH 353 A HOH 183 4 HOH HOH 354 A HOH 184 4 HOH HOH 355 A HOH 185 4 HOH HOH 356 A HOH 186 4 HOH HOH 357 A HOH 187 4 HOH HOH 358 A HOH 188 4 HOH HOH 359 A HOH 189 4 HOH HOH 360 A HOH 190 4 HOH HOH 361 A HOH 193 4 HOH HOH 362 A HOH 194 4 HOH HOH 363 A HOH 195 4 HOH HOH 364 A HOH 196 4 HOH HOH 365 A HOH 198 4 HOH HOH 366 A HOH 199 4 HOH HOH 367 A HOH 202 4 HOH HOH 368 A HOH 205 4 HOH HOH 369 A HOH 206 4 HOH HOH 370 A HOH 208 4 HOH HOH 371 A HOH 209 4 HOH HOH 372 A HOH 211 4 HOH HOH 373 A HOH 212 4 HOH HOH 374 A HOH 217 4 HOH HOH 375 A HOH 220 4 HOH HOH 376 A HOH 223 4 HOH HOH 377 A HOH 224 4 HOH HOH 378 A HOH 225 4 HOH HOH 379 A HOH 227 4 HOH HOH 380 A HOH 228 4 HOH HOH 381 A HOH 233 4 HOH HOH 382 A HOH 234 4 HOH HOH 383 A HOH 235 4 HOH HOH 384 A HOH 238 4 HOH HOH 385 A HOH 240 4 HOH HOH 386 A HOH 242 4 HOH HOH 387 A HOH 243 4 HOH HOH 388 A HOH 247 4 HOH HOH 389 A HOH 248 4 HOH HOH 390 A HOH 249 4 HOH HOH 391 A HOH 257 4 HOH HOH 392 A HOH 258 4 HOH HOH 393 A HOH 259 4 HOH HOH 394 A HOH 260 4 HOH HOH 395 A HOH 263 4 HOH HOH 396 A HOH 265 4 HOH HOH 397 A HOH 268 4 HOH HOH 398 A HOH 271 4 HOH HOH 399 A HOH 273 4 HOH HOH 400 A HOH 274 4 HOH HOH 401 A HOH 277 4 HOH HOH 402 A HOH 278 4 HOH HOH 403 A HOH 280 4 HOH HOH 404 A HOH 287 4 HOH HOH 405 A HOH 291 4 HOH HOH 406 A HOH 298 4 HOH HOH 407 A HOH 305 4 HOH HOH 408 A HOH 316 4 HOH HOH 409 A HOH 319 4 HOH HOH 410 A HOH 321 4 HOH HOH 411 A HOH 322 4 HOH HOH 412 A HOH 331 4 HOH HOH 413 A HOH 341 4 HOH HOH 414 A HOH 342 4 HOH HOH 415 A HOH 343 4 HOH HOH 416 A HOH 344 4 HOH HOH 417 A HOH 345 4 HOH HOH 418 A HOH 346 4 HOH HOH 419 A HOH 347 4 HOH HOH 420 A n 1 -8 A n 2 -7 A n 3 -6 A n 4 -5 A n 5 -4 A n 6 -3 A n 7 -2 A n 8 -1 A n 9 0 A n 10 1 A n 11 2 A n 12 3 A n 13 4 A n 14 5 A n 15 6 A n 16 7 A TYR 8 n 17 TYR 8 A ASP 9 n 18 ASP 9 A TYR 10 n 19 TYR 10 A LEU 11 n 20 LEU 11 A PHE 12 n 21 PHE 12 A LYS 13 n 22 LYS 13 A VAL 14 n 23 VAL 14 A VAL 15 n 24 VAL 15 A LEU 16 n 25 LEU 16 A ILE 17 n 26 ILE 17 A GLY 18 n 27 GLY 18 A ASP 19 n 28 ASP 19 A SER 20 n 29 SER 20 A GLY 21 n 30 GLY 21 A VAL 22 n 31 VAL 22 A GLY 23 n 32 GLY 23 A LYS 24 n 33 LYS 24 A SER 25 n 34 SER 25 A ASN 26 n 35 ASN 26 A LEU 27 n 36 LEU 27 A LEU 28 n 37 LEU 28 A SER 29 n 38 SER 29 A ARG 30 n 39 ARG 30 A PHE 31 n 40 PHE 31 A THR 32 n 41 THR 32 A ARG 33 n 42 ARG 33 A ASN 34 n 43 ASN 34 A ALA 35 n 44 GLU 35 A PHE 36 n 45 PHE 36 A ASN 37 n 46 ASN 37 A LEU 38 n 47 LEU 38 A GLU 39 n 48 GLU 39 A SER 40 n 49 SER 40 A ALA 41 n 50 LYS 41 A SER 42 n 51 SER 42 A THR 43 n 52 THR 43 A ILE 44 n 53 ILE 44 A GLY 45 n 54 GLY 45 A VAL 46 n 55 VAL 46 A GLU 47 n 56 GLU 47 A PHE 48 n 57 PHE 48 A ALA 49 n 58 ALA 49 A THR 50 n 59 THR 50 A ARG 51 n 60 ARG 51 A SER 52 n 61 SER 52 A ILE 53 n 62 ILE 53 A GLN 54 n 63 GLN 54 A VAL 55 n 64 VAL 55 A ASP 56 n 65 ASP 56 A GLY 57 n 66 GLY 57 A LYS 58 n 67 LYS 58 A THR 59 n 68 THR 59 A ILE 60 n 69 ILE 60 A LYS 61 n 70 LYS 61 A ALA 62 n 71 ALA 62 A GLN 63 n 72 GLN 63 A ILE 64 n 73 ILE 64 A TRP 65 n 74 TRP 65 A ASP 66 n 75 ASP 66 A THR 67 n 76 THR 67 A ALA 68 n 77 ALA 68 A GLY 69 n 78 GLY 69 A GLN 70 n 79 GLN 70 A GLU 71 n 80 GLU 71 A ARG 72 n 81 ARG 72 A TYR 73 n 82 TYR 73 A ARG 74 n 83 ARG 74 A ALA 75 n 84 ALA 75 A ILE 76 n 85 ILE 76 A THR 77 n 86 THR 77 A SER 78 n 87 SER 78 A ALA 79 n 88 ALA 79 A TYR 80 n 89 TYR 80 A TYR 81 n 90 TYR 81 A ARG 82 n 91 ARG 82 A GLY 83 n 92 GLY 83 A ALA 84 n 93 ALA 84 A VAL 85 n 94 VAL 85 A GLY 86 n 95 GLY 86 A ALA 87 n 96 ALA 87 A LEU 88 n 97 LEU 88 A LEU 89 n 98 LEU 89 A VAL 90 n 99 VAL 90 A TYR 91 n 100 TYR 91 A ASP 92 n 101 ASP 92 A ILE 93 n 102 ILE 93 A ALA 94 n 103 ALA 94 A LYS 95 n 104 LYS 95 A HIS 96 n 105 HIS 96 A LEU 97 n 106 LEU 97 A THR 98 n 107 THR 98 A TYR 99 n 108 TYR 99 A GLU 100 n 109 GLU 100 A ASN 101 n 110 ASN 101 A VAL 102 n 111 VAL 102 A ALA 103 n 112 GLU 103 A ARG 104 n 113 ARG 104 A TRP 105 n 114 TRP 105 A LEU 106 n 115 LEU 106 A LYS 107 n 116 LYS 107 A GLU 108 n 117 GLU 108 A LEU 109 n 118 LEU 109 A ARG 110 n 119 ARG 110 A ASP 111 n 120 ASP 111 A HIS 112 n 121 HIS 112 A ALA 113 n 122 ALA 113 A ASP 114 n 123 ASP 114 A SER 115 n 124 SER 115 A ASN 116 n 125 ASN 116 A ILE 117 n 126 ILE 117 A VAL 118 n 127 VAL 118 A ILE 119 n 128 ILE 119 A MET 120 n 129 MET 120 A LEU 121 n 130 LEU 121 A VAL 122 n 131 VAL 122 A GLY 123 n 132 GLY 123 A ASN 124 n 133 ASN 124 A LYS 125 n 134 LYS 125 A SER 126 n 135 SER 126 A ASP 127 n 136 ASP 127 A LEU 128 n 137 LEU 128 A ALA 129 n 138 ARG 129 A HIS 130 n 139 HIS 130 A LEU 131 n 140 LEU 131 A ARG 132 n 141 ARG 132 A ALA 133 n 142 ALA 133 A VAL 134 n 143 VAL 134 A PRO 135 n 144 PRO 135 A THR 136 n 145 THR 136 A ASP 137 n 146 ASP 137 A GLU 138 n 147 GLU 138 A ALA 139 n 148 ALA 139 A ARG 140 n 149 ARG 140 A ALA 141 n 150 ALA 141 A PHE 142 n 151 PHE 142 A ALA 143 n 152 ALA 143 A ALA 144 n 153 GLU 144 A ALA 145 n 154 LYS 145 A ASN 146 n 155 ASN 146 A GLY 147 n 156 GLY 147 A LEU 148 n 157 LEU 148 A SER 149 n 158 SER 149 A PHE 150 n 159 PHE 150 A ILE 151 n 160 ILE 151 A GLU 152 n 161 GLU 152 A THR 153 n 162 THR 153 A SER 154 n 163 SER 154 A ALA 155 n 164 ALA 155 A LEU 156 n 165 LEU 156 A ASP 157 n 166 ASP 157 A SER 158 n 167 SER 158 A THR 159 n 168 THR 159 A ASN 160 n 169 ASN 160 A VAL 161 n 170 VAL 161 A ALA 162 n 171 GLU 162 A ALA 163 n 172 ALA 163 A ALA 164 n 173 ALA 164 A PHE 165 n 174 PHE 165 A GLN 166 n 175 GLN 166 A THR 167 n 176 THR 167 A ILE 168 n 177 ILE 168 A LEU 169 n 178 LEU 169 A THR 170 n 179 THR 170 A GLU 171 n 180 GLU 171 A ILE 172 n 181 ILE 172 A TYR 173 n 182 TYR 173 A ARG 174 n 183 ARG 174 A ILE 175 n 184 ILE 175 A author_defined_assembly 1 monomeric A SER 25 A OG SER 34 1_555 A MG 201 B MG MG 1_555 A THR 43 A OG1 THR 52 1_555 77.4 A SER 25 A OG SER 34 1_555 A MG 201 B MG MG 1_555 A GNP 200 C O2G GNP 1_555 169.8 A THR 43 A OG1 THR 52 1_555 A MG 201 B MG MG 1_555 A GNP 200 C O2G GNP 1_555 92.4 A SER 25 A OG SER 34 1_555 A MG 201 B MG MG 1_555 A GNP 200 C O2B GNP 1_555 89.6 A THR 43 A OG1 THR 52 1_555 A MG 201 B MG MG 1_555 A GNP 200 C O2B GNP 1_555 167.0 A GNP 200 C O2G GNP 1_555 A MG 201 B MG MG 1_555 A GNP 200 C O2B GNP 1_555 100.7 A SER 25 A OG SER 34 1_555 A MG 201 B MG MG 1_555 A HOH 216 D O HOH 1_555 90.0 A THR 43 A OG1 THR 52 1_555 A MG 201 B MG MG 1_555 A HOH 216 D O HOH 1_555 86.0 A GNP 200 C O2G GNP 1_555 A MG 201 B MG MG 1_555 A HOH 216 D O HOH 1_555 89.3 A GNP 200 C O2B GNP 1_555 A MG 201 B MG MG 1_555 A HOH 216 D O HOH 1_555 94.4 A SER 25 A OG SER 34 1_555 A MG 201 B MG MG 1_555 A HOH 231 D O HOH 1_555 86.7 A THR 43 A OG1 THR 52 1_555 A MG 201 B MG MG 1_555 A HOH 231 D O HOH 1_555 91.9 A GNP 200 C O2G GNP 1_555 A MG 201 B MG MG 1_555 A HOH 231 D O HOH 1_555 93.7 A GNP 200 C O2B GNP 1_555 A MG 201 B MG MG 1_555 A HOH 231 D O HOH 1_555 87.0 A HOH 216 D O HOH 1_555 A MG 201 B MG MG 1_555 A HOH 231 D O HOH 1_555 176.4 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ILE 53 A N ILE 62 A O ILE 60 A O ILE 69 A O TRP 65 A O TRP 74 A N VAL 14 A N VAL 23 A N ILE 17 A N ILE 26 A O VAL 90 A O VAL 99 A N LEU 89 A N LEU 98 A O VAL 122 A O VAL 131 A N LEU 121 A N LEU 130 A O SER 149 A O SER 158 1 A CG GLU 35 A CG GLU 44 1 Y 1 A CD GLU 35 A CD GLU 44 1 Y 1 A OE1 GLU 35 A OE1 GLU 44 1 Y 1 A OE2 GLU 35 A OE2 GLU 44 1 Y 1 A CG LYS 41 A CG LYS 50 1 Y 1 A CD LYS 41 A CD LYS 50 1 Y 1 A CE LYS 41 A CE LYS 50 1 Y 1 A NZ LYS 41 A NZ LYS 50 1 Y 1 A CG GLU 103 A CG GLU 112 1 Y 1 A CD GLU 103 A CD GLU 112 1 Y 1 A OE1 GLU 103 A OE1 GLU 112 1 Y 1 A OE2 GLU 103 A OE2 GLU 112 1 Y 1 A CG ARG 129 A CG ARG 138 1 Y 1 A CD ARG 129 A CD ARG 138 1 Y 1 A NE ARG 129 A NE ARG 138 1 Y 1 A CZ ARG 129 A CZ ARG 138 1 Y 1 A NH1 ARG 129 A NH1 ARG 138 1 Y 1 A NH2 ARG 129 A NH2 ARG 138 1 Y 1 A CG GLU 144 A CG GLU 153 1 Y 1 A CD GLU 144 A CD GLU 153 1 Y 1 A OE1 GLU 144 A OE1 GLU 153 1 Y 1 A OE2 GLU 144 A OE2 GLU 153 1 Y 1 A CG LYS 145 A CG LYS 154 1 Y 1 A CD LYS 145 A CD LYS 154 1 Y 1 A CE LYS 145 A CE LYS 154 1 Y 1 A NZ LYS 145 A NZ LYS 154 1 Y 1 A CG GLU 162 A CG GLU 171 1 Y 1 A CD GLU 162 A CD GLU 171 1 Y 1 A OE1 GLU 162 A OE1 GLU 171 1 Y 1 A OE2 GLU 162 A OE2 GLU 171 1 Y 1 A MET -8 A MET 1 1 Y 1 A GLY -7 A GLY 2 1 Y 1 A HIS -6 A HIS 3 1 Y 1 A HIS -5 A HIS 4 1 Y 1 A HIS -4 A HIS 5 1 Y 1 A HIS -3 A HIS 6 1 Y 1 A HIS -2 A HIS 7 1 Y 1 A HIS -1 A HIS 8 1 Y 1 A GLY 0 A GLY 9 1 Y 1 A SER 1 A SER 10 1 Y 1 A LEU 2 A LEU 11 1 Y 1 A VAL 3 A VAL 12 1 Y 1 A PRO 4 A PRO 13 1 Y 1 A ARG 5 A ARG 14 1 Y 1 A GLY 6 A GLY 15 1 Y 1 A SER 7 A SER 16 1 Y 1 A A O O HOH HOH 255 268 2.19 1_555 5_555 1 A LYS 125 72.21 37.82 1 A LEU 128 -93.13 35.57 1 A SER 158 79.15 -5.94 22.315 -0.30 0.00 0.00 -0.30 0.00 0.60 0.958 0.932 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.22829 0.17753 0.197 0.18006 2.00 6.00 697 14295 12992 5.1 99.81 3.692 0.105 RANDOM 1 THROUGHOUT 0 0 MOLECULAR REPLACEMENT 0.174 0.161 0.80 0.80 1.20 Polyalanine Rab5c MAXIMUM LIKELIHOOD BABINET MODEL WITH MASK 2.00 6.00 219 1561 33 0 1309 0.008 0.022 1365 0.001 0.020 1241 1.067 1.970 1859 0.723 3.000 2855 5.213 5.000 167 32.010 23.115 61 11.381 15.000 220 13.849 15.000 11 0.056 0.200 215 0.003 0.020 1508 0.001 0.020 293 0.200 0.200 268 0.170 0.200 1240 0.174 0.200 665 0.077 0.200 797 0.155 0.200 152 0.062 0.200 1 0.139 0.200 1 0.294 0.200 33 0.188 0.200 34 0.686 1.500 1084 0.081 1.500 347 0.723 2.000 1328 1.196 3.000 644 1.782 4.500 531 0.272 0.234 2.046 45 837 20 97.14 34.1 2.0 50 1YZK 14293 0 0 0.058 1 31.6 7 99.8 2.0 2.06 7.6 1139 0.252 7 99.8 refinement REFMAC 5.2.0005 data reduction DENZO data scaling SCALEPACK phasing AMoRE GppNHp bound Rab11 GTPase 1 N N 2 N N 3 N N 4 N N A GLY 23 A GLY 32 HELX_P A ASN 34 A ASN 43 1 1 12 A THR 77 A THR 86 HELX_P A ARG 82 A ARG 91 1 2 6 A LYS 95 A LYS 104 HELX_P A ASN 101 A ASN 110 1 3 7 A ASN 101 A ASN 110 HELX_P A ALA 113 A ALA 122 1 4 13 A LYS 125 A LYS 134 HELX_P A ARG 132 A ARG 141 5 5 8 A PRO 135 A PRO 144 HELX_P A ASN 146 A ASN 155 1 6 12 A ASN 160 A ASN 169 HELX_P A ILE 175 A ILE 184 1 7 16 metalc 2.111 A SER 25 A OG SER 34 1_555 A MG 201 B MG MG 1_555 metalc 2.167 A THR 43 A OG1 THR 52 1_555 A MG 201 B MG MG 1_555 metalc 1.928 A GNP 200 C O2G GNP 1_555 A MG 201 B MG MG 1_555 metalc 1.998 A GNP 200 C O2B GNP 1_555 A MG 201 B MG MG 1_555 metalc 2.102 A MG 201 B MG MG 1_555 A HOH 216 D O HOH 1_555 metalc 2.164 A MG 201 B MG MG 1_555 A HOH 231 D O HOH 1_555 PROTEIN TRANSPORT Rab GTPase, Rab11, Vesicular trafficking, protein transport RB11A_HUMAN UNP 1 8 P62491 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGA LLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQT ILTEIYRI 8 175 1YZK 8 175 P62491 A 1 17 184 1 cloning artifact MET -8 1YZK A P62491 UNP 1 1 cloning artifact GLY -7 1YZK A P62491 UNP 2 1 cloning artifact HIS -6 1YZK A P62491 UNP 3 1 cloning artifact HIS -5 1YZK A P62491 UNP 4 1 cloning artifact HIS -4 1YZK A P62491 UNP 5 1 cloning artifact HIS -3 1YZK A P62491 UNP 6 1 cloning artifact HIS -2 1YZK A P62491 UNP 7 1 cloning artifact HIS -1 1YZK A P62491 UNP 8 1 cloning artifact GLY 0 1YZK A P62491 UNP 9 1 cloning artifact SER 1 1YZK A P62491 UNP 10 1 cloning artifact LEU 2 1YZK A P62491 UNP 11 1 cloning artifact VAL 3 1YZK A P62491 UNP 12 1 cloning artifact PRO 4 1YZK A P62491 UNP 13 1 cloning artifact ARG 5 1YZK A P62491 UNP 14 1 cloning artifact GLY 6 1YZK A P62491 UNP 15 1 cloning artifact SER 7 1YZK A P62491 UNP 16 6 anti-parallel parallel parallel parallel parallel A VAL 46 A VAL 55 A VAL 55 A VAL 64 A LYS 58 A LYS 67 A THR 67 A THR 76 A TYR 10 A TYR 19 A ILE 17 A ILE 26 A ALA 84 A ALA 93 A ASP 92 A ASP 101 A VAL 118 A VAL 127 A ASN 124 A ASN 133 A SER 149 A SER 158 A GLU 152 A GLU 161 BINDING SITE FOR RESIDUE MG A 201 A MG 201 Software 5 BINDING SITE FOR RESIDUE GNP A 200 A GNP 200 Software 31 A SER 25 A SER 34 5 1_555 A THR 43 A THR 52 5 1_555 A GNP 200 C GNP 5 1_555 A HOH 216 D HOH 5 1_555 A HOH 231 D HOH 5 1_555 A SER 20 A SER 29 31 1_555 A GLY 21 A GLY 30 31 1_555 A VAL 22 A VAL 31 31 1_555 A GLY 23 A GLY 32 31 1_555 A LYS 24 A LYS 33 31 1_555 A SER 25 A SER 34 31 1_555 A ASN 26 A ASN 35 31 1_555 A PHE 36 A PHE 45 31 1_555 A ASN 37 A ASN 46 31 1_555 A LEU 38 A LEU 47 31 1_555 A SER 40 A SER 49 31 1_555 A SER 42 A SER 51 31 1_555 A THR 43 A THR 52 31 1_555 A ALA 68 A ALA 77 31 1_555 A GLY 69 A GLY 78 31 1_555 A ASN 124 A ASN 133 31 1_555 A LYS 125 A LYS 134 31 1_555 A ASP 127 A ASP 136 31 1_555 A LEU 128 A LEU 137 31 1_555 A SER 154 A SER 163 31 1_555 A ALA 155 A ALA 164 31 1_555 A LEU 156 A LEU 165 31 1_555 A MG 201 B MG 31 1_555 A HOH 216 D HOH 31 1_555 A HOH 218 D HOH 31 1_555 A HOH 231 D HOH 31 1_555 A HOH 258 D HOH 31 1_555 A HOH 273 D HOH 31 1_555 A HOH 305 D HOH 31 1_555 A HOH 359 D HOH 31 7_555 A HOH 399 D HOH 31 1_555 97 I 4 2 2