0.017795 0.010274 0.000000 0.000000 0.020548 0.000000 0.000000 0.000000 0.018169 0.00000 0.00000 0.00000 Eathiraj, S. Pan, X. Ritacco, C. Lambright, D.G. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 3 90.00 90.00 120.00 56.194 56.194 55.039 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C10 H17 N6 O13 P3 522.196 PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Mg 2 24.305 MAGNESIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N P N 138 N O N 139 N O N 140 N O N 141 N N N 142 R P N 143 N O N 144 N O N 145 N O N 146 S P N 147 N O N 148 N O N 149 N O N 150 N C N 151 R C N 152 N O N 153 S C N 154 N O N 155 R C N 156 N O N 157 R C Y 158 N N Y 159 N C Y 160 N N Y 161 N C Y 162 N C N 163 N O Y 164 N N Y 165 N C N 166 N N Y 167 N N Y 168 N C N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N N N 187 S C N 188 N C N 189 N O N 190 N C Y 191 N C Y 192 N N Y 193 N C Y 194 N C Y 195 N N N 196 N O N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N O N 208 N H N 209 N H N 210 N N N 211 S C N 212 N C N 213 N O N 214 S C N 215 N C N 216 N C N 217 N C N 218 N O N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N N N 233 S C N 234 N C N 235 N O N 236 N C N 237 N C N 238 N C N 239 N C N 240 N O N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N N N 255 S C N 256 N C N 257 N O N 258 N C N 259 N C N 260 N C N 261 N C N 262 N N N 263 N O N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N N N 280 S C N 281 N C N 282 N O N 283 N C N 284 N C N 285 N S N 286 N C N 287 N O N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N MG N 300 N N N 301 S C N 302 N C N 303 N O N 304 N C Y 305 N C Y 306 N C Y 307 N C Y 308 N C Y 309 N C Y 310 N C N 311 N O N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N N N 324 S C N 325 N C N 326 N O N 327 N C N 328 N C N 329 N C N 330 N O N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N N N 341 S C N 342 N C N 343 N O N 344 N C N 345 N O N 346 N O N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N N N 355 S C N 356 N C N 357 N O N 358 R C N 359 N O N 360 N C N 361 N O N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N N N 372 S C N 373 N C N 374 N O N 375 N C Y 376 N C Y 377 N C Y 378 N C Y 379 N N Y 380 N C Y 381 N C Y 382 N C Y 383 N C Y 384 N C N 385 N O N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N N N 399 S C N 400 N C N 401 N O N 402 N C Y 403 N C Y 404 N C Y 405 N C Y 406 N C Y 407 N C Y 408 N C N 409 N O N 410 N O N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N N N 423 S C N 424 N C N 425 N O N 426 N C N 427 N C N 428 N C N 429 N O N 430 N H N 431 N H N 432 N H N 433 N H N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N doub N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N doub N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing Y 164 N sing Y 165 N sing Y 166 N doub N 167 N sing Y 168 N sing Y 169 N sing Y 170 N doub N 171 N doub Y 172 N sing Y 173 N sing N 174 N sing N 175 N sing Y 176 N doub N 177 N sing N 178 N sing Y 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N doub N 187 N sing N 188 N sing N 189 N sing N 190 N sing Y 191 N sing Y 192 N doub Y 193 N doub N 194 N sing Y 195 N sing N 196 N sing Y 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N doub N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N doub N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N doub N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N doub N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N doub N 295 N sing N 296 N sing N 297 N sing N 298 N sing Y 299 N doub Y 300 N sing Y 301 N sing N 302 N sing Y 303 N doub N 304 N sing Y 305 N doub N 306 N sing Y 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N doub N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N doub N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N doub N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N doub N 364 N sing N 365 N sing N 366 N sing N 367 N sing Y 368 N doub Y 369 N sing Y 370 N sing N 371 N sing Y 372 N doub Y 373 N sing Y 374 N sing N 375 N sing Y 376 N sing Y 377 N doub N 378 N sing Y 379 N doub N 380 N sing Y 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N doub N 392 N sing N 393 N sing N 394 N sing N 395 N sing Y 396 N doub Y 397 N sing Y 398 N sing N 399 N sing Y 400 N doub N 401 N sing Y 402 N doub N 403 N sing Y 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N doub N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing UK Nature NATUAS 0006 0028-0836 436 415 419 10.1038/nature03798 16034420 Structural basis of family-wide Rab GTPase recognition by rabenosyn-5. 2005 10.2210/pdb1z06/pdb pdb_00001z06 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 osmic mirror IMAGE PLATE 2003-02-25 MAR scanner 300 mm plate SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RUH3R 21683.803 Ras-related protein Rab-33B 1 man polymer 24.305 MAGNESIUM ION 1 syn non-polymer 522.196 PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER 1 syn non-polymer 18.015 water 111 nat water no no MGHHHHHHGSLVPRGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMP LFETSAKNPNDNDHVEAIFMTLAHKLKSH MGHHHHHHGSLVPRGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMP LFETSAKNPNDNDHVEAIFMTLAHKLKSH A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n house mouse Mus Escherichia sample Rab33b 10090 Mus musculus 562 Escherichia coli BL21 (DE3) Codon Plus-RIL Cells 6xHis fusion, pET vector modified pET15b 1 2.75 55.0 VAPOR DIFFUSION, HANGING DROP 6.0 20% PEG 6000, 10% Glycerol, 1M Lithium Chlroride, 50mM MES, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K 277 chem_comp_atom chem_comp_bond database_2 pdbx_struct_conn_angle struct_conn struct_ref_seq_dif struct_site pdbx_initial_refinement_model repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Refinement description 1 0 2005-07-26 1 1 2008-04-30 1 2 2011-07-13 1 3 2024-02-14 1 4 2024-04-03 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2005-03-01 REL REL MG MAGNESIUM ION GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HOH water Polyalanine Rab5c GTPase Other experimental model MG 201 2 MG MG 203 A GNP 200 3 GNP GNP 204 A HOH 1 4 HOH HOH 205 A HOH 2 4 HOH HOH 206 A HOH 3 4 HOH HOH 207 A HOH 5 4 HOH HOH 208 A HOH 7 4 HOH HOH 209 A HOH 8 4 HOH HOH 210 A HOH 11 4 HOH HOH 211 A HOH 12 4 HOH HOH 212 A HOH 13 4 HOH HOH 213 A HOH 14 4 HOH HOH 214 A HOH 15 4 HOH HOH 215 A HOH 16 4 HOH HOH 216 A HOH 17 4 HOH HOH 217 A HOH 19 4 HOH HOH 218 A HOH 22 4 HOH HOH 219 A HOH 23 4 HOH HOH 220 A HOH 24 4 HOH HOH 221 A HOH 25 4 HOH HOH 222 A HOH 26 4 HOH HOH 223 A HOH 27 4 HOH HOH 224 A HOH 28 4 HOH HOH 225 A HOH 29 4 HOH HOH 226 A HOH 30 4 HOH HOH 227 A HOH 31 4 HOH HOH 228 A HOH 32 4 HOH HOH 229 A HOH 33 4 HOH HOH 230 A HOH 35 4 HOH HOH 231 A HOH 36 4 HOH HOH 232 A HOH 37 4 HOH HOH 233 A HOH 38 4 HOH HOH 234 A HOH 39 4 HOH HOH 235 A HOH 40 4 HOH HOH 236 A HOH 41 4 HOH HOH 237 A HOH 42 4 HOH HOH 238 A HOH 43 4 HOH HOH 239 A HOH 44 4 HOH HOH 240 A HOH 45 4 HOH HOH 241 A HOH 46 4 HOH HOH 242 A HOH 49 4 HOH HOH 243 A HOH 50 4 HOH HOH 244 A HOH 51 4 HOH HOH 245 A HOH 52 4 HOH HOH 246 A HOH 53 4 HOH HOH 247 A HOH 54 4 HOH HOH 248 A HOH 56 4 HOH HOH 249 A HOH 58 4 HOH HOH 250 A HOH 59 4 HOH HOH 251 A HOH 60 4 HOH HOH 252 A HOH 61 4 HOH HOH 253 A HOH 62 4 HOH HOH 254 A HOH 63 4 HOH HOH 255 A HOH 65 4 HOH HOH 256 A HOH 66 4 HOH HOH 257 A HOH 69 4 HOH HOH 258 A HOH 73 4 HOH HOH 259 A HOH 74 4 HOH HOH 260 A HOH 75 4 HOH HOH 261 A HOH 76 4 HOH HOH 262 A HOH 78 4 HOH HOH 263 A HOH 79 4 HOH HOH 264 A HOH 84 4 HOH HOH 265 A HOH 85 4 HOH HOH 266 A HOH 86 4 HOH HOH 267 A HOH 87 4 HOH HOH 268 A HOH 88 4 HOH HOH 269 A HOH 89 4 HOH HOH 270 A HOH 91 4 HOH HOH 271 A HOH 92 4 HOH HOH 272 A HOH 93 4 HOH HOH 273 A HOH 95 4 HOH HOH 274 A HOH 97 4 HOH HOH 275 A HOH 99 4 HOH HOH 276 A HOH 101 4 HOH HOH 277 A HOH 102 4 HOH HOH 278 A HOH 104 4 HOH HOH 279 A HOH 105 4 HOH HOH 280 A HOH 106 4 HOH HOH 281 A HOH 108 4 HOH HOH 282 A HOH 110 4 HOH HOH 283 A HOH 111 4 HOH HOH 284 A HOH 114 4 HOH HOH 285 A HOH 115 4 HOH HOH 286 A HOH 117 4 HOH HOH 287 A HOH 118 4 HOH HOH 288 A HOH 120 4 HOH HOH 289 A HOH 121 4 HOH HOH 290 A HOH 122 4 HOH HOH 291 A HOH 123 4 HOH HOH 292 A HOH 127 4 HOH HOH 293 A HOH 129 4 HOH HOH 294 A HOH 132 4 HOH HOH 295 A HOH 133 4 HOH HOH 296 A HOH 136 4 HOH HOH 297 A HOH 137 4 HOH HOH 298 A HOH 140 4 HOH HOH 299 A HOH 141 4 HOH HOH 300 A HOH 142 4 HOH HOH 301 A HOH 144 4 HOH HOH 302 A HOH 145 4 HOH HOH 303 A HOH 147 4 HOH HOH 304 A HOH 150 4 HOH HOH 305 A HOH 151 4 HOH HOH 306 A HOH 152 4 HOH HOH 307 A HOH 154 4 HOH HOH 308 A HOH 156 4 HOH HOH 309 A HOH 159 4 HOH HOH 310 A HOH 160 4 HOH HOH 311 A HOH 166 4 HOH HOH 312 A HOH 167 4 HOH HOH 313 A HOH 169 4 HOH HOH 314 A HOH 175 4 HOH HOH 315 A n 1 14 A n 2 15 A n 3 16 A n 4 17 A n 5 18 A n 6 19 A n 7 20 A n 8 21 A n 9 22 A n 10 23 A n 11 24 A n 12 25 A n 13 26 A n 14 27 A n 15 28 A n 16 29 A n 17 30 A n 18 31 A ALA 32 n 19 ARG 32 A ILE 33 n 20 ILE 33 A PHE 34 n 21 PHE 34 A LYS 35 n 22 LYS 35 A ILE 36 n 23 ILE 36 A ILE 37 n 24 ILE 37 A VAL 38 n 25 VAL 38 A ILE 39 n 26 ILE 39 A GLY 40 n 27 GLY 40 A ASP 41 n 28 ASP 41 A SER 42 n 29 SER 42 A ASN 43 n 30 ASN 43 A VAL 44 n 31 VAL 44 A GLY 45 n 32 GLY 45 A LYS 46 n 33 LYS 46 A THR 47 n 34 THR 47 A CYS 48 n 35 CYS 48 A LEU 49 n 36 LEU 49 A THR 50 n 37 THR 50 A TYR 51 n 38 TYR 51 A ARG 52 n 39 ARG 52 A PHE 53 n 40 PHE 53 A CYS 54 n 41 CYS 54 A ALA 55 n 42 ALA 55 A GLY 56 n 43 GLY 56 A ARG 57 n 44 ARG 57 A PHE 58 n 45 PHE 58 A PRO 59 n 46 PRO 59 A ASP 60 n 47 ASP 60 A ARG 61 n 48 ARG 61 A THR 62 n 49 THR 62 A ALA 63 n 50 GLU 63 A ALA 64 n 51 ALA 64 A THR 65 n 52 THR 65 A ALA 66 n 53 ILE 66 A GLY 67 n 54 GLY 67 A VAL 68 n 55 VAL 68 A ASP 69 n 56 ASP 69 A PHE 70 n 57 PHE 70 A ARG 71 n 58 ARG 71 A GLU 72 n 59 GLU 72 A ARG 73 n 60 ARG 73 A ALA 74 n 61 ALA 74 A VAL 75 n 62 VAL 75 A ASP 76 n 63 ASP 76 A ILE 77 n 64 ILE 77 A ASP 78 n 65 ASP 78 A GLY 79 n 66 GLY 79 A GLU 80 n 67 GLU 80 A ARG 81 n 68 ARG 81 A ILE 82 n 69 ILE 82 A LYS 83 n 70 LYS 83 A ILE 84 n 71 ILE 84 A GLN 85 n 72 GLN 85 A LEU 86 n 73 LEU 86 A TRP 87 n 74 TRP 87 A ASP 88 n 75 ASP 88 A THR 89 n 76 THR 89 A ALA 90 n 77 ALA 90 A GLY 91 n 78 GLY 91 A GLN 92 n 79 GLN 92 A GLU 93 n 80 GLU 93 A ALA 94 n 81 ARG 94 A PHE 95 n 82 PHE 95 A ARG 96 n 83 ARG 96 A LYS 97 n 84 LYS 97 A SER 98 n 85 SER 98 A MET 99 n 86 MET 99 A VAL 100 n 87 VAL 100 A GLN 101 n 88 GLN 101 A HIS 102 n 89 HIS 102 A TYR 103 n 90 TYR 103 A TYR 104 n 91 TYR 104 A ARG 105 n 92 ARG 105 A ASN 106 n 93 ASN 106 A VAL 107 n 94 VAL 107 A HIS 108 n 95 HIS 108 A ALA 109 n 96 ALA 109 A VAL 110 n 97 VAL 110 A VAL 111 n 98 VAL 111 A PHE 112 n 99 PHE 112 A VAL 113 n 100 VAL 113 A TYR 114 n 101 TYR 114 A ASP 115 n 102 ASP 115 A MET 116 n 103 MET 116 A THR 117 n 104 THR 117 A ASN 118 n 105 ASN 118 A MET 119 n 106 MET 119 A ALA 120 n 107 ALA 120 A SER 121 n 108 SER 121 A PHE 122 n 109 PHE 122 A HIS 123 n 110 HIS 123 A SER 124 n 111 SER 124 A LEU 125 n 112 LEU 125 A PRO 126 n 113 PRO 126 A ALA 127 n 114 ALA 127 A TRP 128 n 115 TRP 128 A ILE 129 n 116 ILE 129 A GLU 130 n 117 GLU 130 A GLU 131 n 118 GLU 131 A CYS 132 n 119 CYS 132 A LYS 133 n 120 LYS 133 A GLN 134 n 121 GLN 134 A HIS 135 n 122 HIS 135 A LEU 136 n 123 LEU 136 A GLY 137 n 124 LEU 137 A ALA 138 n 125 ALA 138 A ALA 139 n 126 ASN 139 A ALA 140 n 127 ASP 140 A ILE 141 n 128 ILE 141 A PRO 142 n 129 PRO 142 A ARG 143 n 130 ARG 143 A ILE 144 n 131 ILE 144 A LEU 145 n 132 LEU 145 A VAL 146 n 133 VAL 146 A GLY 147 n 134 GLY 147 A ASN 148 n 135 ASN 148 A LYS 149 n 136 LYS 149 A CYS 150 n 137 CYS 150 A ASP 151 n 138 ASP 151 A LEU 152 n 139 LEU 152 A ALA 153 n 140 ARG 153 A SER 154 n 141 SER 154 A ALA 155 n 142 ALA 155 A ILE 156 n 143 ILE 156 A GLN 157 n 144 GLN 157 A VAL 158 n 145 VAL 158 A PRO 159 n 146 PRO 159 A THR 160 n 147 THR 160 A ALA 161 n 148 ASP 161 A LEU 162 n 149 LEU 162 A ALA 163 n 150 ALA 163 A GLN 164 n 151 GLN 164 A ALA 165 n 152 LYS 165 A PHE 166 n 153 PHE 166 A ALA 167 n 154 ALA 167 A ASP 168 n 155 ASP 168 A THR 169 n 156 THR 169 A HIS 170 n 157 HIS 170 A SER 171 n 158 SER 171 A MET 172 n 159 MET 172 A PRO 173 n 160 PRO 173 A LEU 174 n 161 LEU 174 A PHE 175 n 162 PHE 175 A GLU 176 n 163 GLU 176 A THR 177 n 164 THR 177 A SER 178 n 165 SER 178 A ALA 179 n 166 ALA 179 A LYS 180 n 167 LYS 180 A ALA 181 n 168 ASN 181 A ALA 182 n 169 PRO 182 A ALA 183 n 170 ASN 183 A ALA 184 n 171 ASP 184 A ALA 185 n 172 ASN 185 A ALA 186 n 173 ASP 186 A HIS 187 n 174 HIS 187 A VAL 188 n 175 VAL 188 A GLU 189 n 176 GLU 189 A ALA 190 n 177 ALA 190 A ILE 191 n 178 ILE 191 A PHE 192 n 179 PHE 192 A MET 193 n 180 MET 193 A THR 194 n 181 THR 194 A LEU 195 n 182 LEU 195 A ALA 196 n 183 ALA 196 A n 184 197 A n 185 198 A n 186 199 A n 187 200 A n 188 201 A n 189 202 A author_defined_assembly 1 monomeric A THR 47 A OG1 THR 34 1_555 A MG 203 B MG MG 1_555 A THR 65 A OG1 THR 52 1_555 84.2 A THR 47 A OG1 THR 34 1_555 A MG 203 B MG MG 1_555 A GNP 204 C O2G GNP 1_555 171.2 A THR 65 A OG1 THR 52 1_555 A MG 203 B MG MG 1_555 A GNP 204 C O2G GNP 1_555 87.1 A THR 47 A OG1 THR 34 1_555 A MG 203 B MG MG 1_555 A GNP 204 C O2B GNP 1_555 92.1 A THR 65 A OG1 THR 52 1_555 A MG 203 B MG MG 1_555 A GNP 204 C O2B GNP 1_555 176.2 A GNP 204 C O2G GNP 1_555 A MG 203 B MG MG 1_555 A GNP 204 C O2B GNP 1_555 96.6 A THR 47 A OG1 THR 34 1_555 A MG 203 B MG MG 1_555 A HOH 210 D O HOH 1_555 84.9 A THR 65 A OG1 THR 52 1_555 A MG 203 B MG MG 1_555 A HOH 210 D O HOH 1_555 88.9 A GNP 204 C O2G GNP 1_555 A MG 203 B MG MG 1_555 A HOH 210 D O HOH 1_555 95.6 A GNP 204 C O2B GNP 1_555 A MG 203 B MG MG 1_555 A HOH 210 D O HOH 1_555 91.6 A THR 47 A OG1 THR 34 1_555 A MG 203 B MG MG 1_555 A HOH 218 D O HOH 1_555 90.3 A THR 65 A OG1 THR 52 1_555 A MG 203 B MG MG 1_555 A HOH 218 D O HOH 1_555 85.9 A GNP 204 C O2G GNP 1_555 A MG 203 B MG MG 1_555 A HOH 218 D O HOH 1_555 88.5 A GNP 204 C O2B GNP 1_555 A MG 203 B MG MG 1_555 A HOH 218 D O HOH 1_555 93.2 A HOH 210 D O HOH 1_555 A MG 203 B MG MG 1_555 A HOH 218 D O HOH 1_555 173.2 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N VAL 75 A N VAL 62 A O ILE 82 A O ILE 69 A O LYS 83 A O LYS 70 A N PHE 34 A N PHE 21 A N ILE 39 A N ILE 26 A O VAL 111 A O VAL 98 A N PHE 112 A N PHE 99 A O VAL 146 A O VAL 133 A N GLY 147 A N GLY 134 A O PHE 175 A O PHE 162 1 A CG ARG 32 A CG ARG 19 1 Y 1 A CD ARG 32 A CD ARG 19 1 Y 1 A NE ARG 32 A NE ARG 19 1 Y 1 A CZ ARG 32 A CZ ARG 19 1 Y 1 A NH1 ARG 32 A NH1 ARG 19 1 Y 1 A NH2 ARG 32 A NH2 ARG 19 1 Y 1 A CG GLU 63 A CG GLU 50 1 Y 1 A CD GLU 63 A CD GLU 50 1 Y 1 A OE1 GLU 63 A OE1 GLU 50 1 Y 1 A OE2 GLU 63 A OE2 GLU 50 1 Y 1 A CG1 ILE 66 A CG1 ILE 53 1 Y 1 A CG2 ILE 66 A CG2 ILE 53 1 Y 1 A CD1 ILE 66 A CD1 ILE 53 1 Y 1 A CG ARG 94 A CG ARG 81 1 Y 1 A CD ARG 94 A CD ARG 81 1 Y 1 A NE ARG 94 A NE ARG 81 1 Y 1 A CZ ARG 94 A CZ ARG 81 1 Y 1 A NH1 ARG 94 A NH1 ARG 81 1 Y 1 A NH2 ARG 94 A NH2 ARG 81 1 Y 1 A CB LEU 137 A CB LEU 124 1 Y 1 A CG LEU 137 A CG LEU 124 1 Y 1 A CD1 LEU 137 A CD1 LEU 124 1 Y 1 A CD2 LEU 137 A CD2 LEU 124 1 Y 1 A CG ASN 139 A CG ASN 126 1 Y 1 A OD1 ASN 139 A OD1 ASN 126 1 Y 1 A ND2 ASN 139 A ND2 ASN 126 1 Y 1 A CG ASP 140 A CG ASP 127 1 Y 1 A OD1 ASP 140 A OD1 ASP 127 1 Y 1 A OD2 ASP 140 A OD2 ASP 127 1 Y 1 A CG ARG 153 A CG ARG 140 1 Y 1 A CD ARG 153 A CD ARG 140 1 Y 1 A NE ARG 153 A NE ARG 140 1 Y 1 A CZ ARG 153 A CZ ARG 140 1 Y 1 A NH1 ARG 153 A NH1 ARG 140 1 Y 1 A NH2 ARG 153 A NH2 ARG 140 1 Y 1 A CG ASP 161 A CG ASP 148 1 Y 1 A OD1 ASP 161 A OD1 ASP 148 1 Y 1 A OD2 ASP 161 A OD2 ASP 148 1 Y 1 A CG LYS 165 A CG LYS 152 1 Y 1 A CD LYS 165 A CD LYS 152 1 Y 1 A CE LYS 165 A CE LYS 152 1 Y 1 A NZ LYS 165 A NZ LYS 152 1 Y 1 A CG ASN 181 A CG ASN 168 1 Y 1 A OD1 ASN 181 A OD1 ASN 168 1 Y 1 A ND2 ASN 181 A ND2 ASN 168 1 Y 1 A CG PRO 182 A CG PRO 169 1 Y 1 A CD PRO 182 A CD PRO 169 1 Y 1 A CG ASN 183 A CG ASN 170 1 Y 1 A OD1 ASN 183 A OD1 ASN 170 1 Y 1 A ND2 ASN 183 A ND2 ASN 170 1 Y 1 A CG ASP 184 A CG ASP 171 1 Y 1 A OD1 ASP 184 A OD1 ASP 171 1 Y 1 A OD2 ASP 184 A OD2 ASP 171 1 Y 1 A CG ASN 185 A CG ASN 172 1 Y 1 A OD1 ASN 185 A OD1 ASN 172 1 Y 1 A ND2 ASN 185 A ND2 ASN 172 1 Y 1 A CG ASP 186 A CG ASP 173 1 Y 1 A OD1 ASP 186 A OD1 ASP 173 1 Y 1 A OD2 ASP 186 A OD2 ASP 173 1 Y 1 A MET 14 A MET 1 1 Y 1 A GLY 15 A GLY 2 1 Y 1 A HIS 16 A HIS 3 1 Y 1 A HIS 17 A HIS 4 1 Y 1 A HIS 18 A HIS 5 1 Y 1 A HIS 19 A HIS 6 1 Y 1 A HIS 20 A HIS 7 1 Y 1 A HIS 21 A HIS 8 1 Y 1 A GLY 22 A GLY 9 1 Y 1 A SER 23 A SER 10 1 Y 1 A LEU 24 A LEU 11 1 Y 1 A VAL 25 A VAL 12 1 Y 1 A PRO 26 A PRO 13 1 Y 1 A ARG 27 A ARG 14 1 Y 1 A GLY 28 A GLY 15 1 Y 1 A SER 29 A SER 16 1 Y 1 A ARG 30 A ARG 17 1 Y 1 A SER 31 A SER 18 1 Y 1 A HIS 197 A HIS 184 1 Y 1 A LYS 198 A LYS 185 1 Y 1 A LEU 199 A LEU 186 1 Y 1 A LYS 200 A LYS 187 1 Y 1 A SER 201 A SER 188 1 Y 1 A HIS 202 A HIS 189 1 Y 1 8.04 1.20 103.30 111.34 A A A N CA CB PRO PRO PRO 182 182 182 N 1 A ASN 43 87.61 4.97 1 A LYS 149 71.95 34.84 1 A HIS 187 -126.76 -52.39 22.211 -0.43 -0.21 0.00 -0.43 0.00 0.64 0.953 0.937 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.21794 0.18946 0.207 0.19082 1.81 8.00 879 17435 16353 5.1 97.52 2.264 0.072 RANDOM 1 THROUGHOUT 0 MOLECULAR REPLACEMENT 0.127 0.119 0.80 0.80 1.20 Polyalanine Rab5c GTPase MAXIMUM LIKELIHOOD BABINET MODEL WITH MASK 1.81 8.00 111 1413 33 0 1269 0.008 0.022 1330 0.001 0.020 1196 1.275 1.958 1812 0.826 3.000 2759 5.458 5.000 164 34.740 22.982 57 12.230 15.000 205 15.906 15.000 9 0.078 0.200 204 0.003 0.020 1472 0.001 0.020 283 0.205 0.200 240 0.182 0.200 1149 0.175 0.200 646 0.082 0.200 716 0.129 0.200 92 0.096 0.200 1 0.096 0.200 3 0.261 0.200 31 0.131 0.200 16 0.965 1.500 1072 0.123 1.500 335 1.059 2.000 1313 1.349 3.000 609 1.915 4.500 499 0.261 0.215 1.850 66 1084 20 93.12 31.5 1.80 50 1Z06 17431 0 0 0.057 1 29.0 5 96.7 1.80 1.85 7.7 1240 0.249 5 84.2 refinement REFMAC 5.2.0005 data reduction DENZO data scaling SCALEPACK phasing AMoRE GppNHp-Bound Rab33 GTPase 1 N N 2 N N 3 N N 4 N N A GLY 45 A GLY 32 HELX_P A GLY 56 A GLY 43 1 1 12 A GLN 92 A GLN 79 HELX_P A LYS 97 A LYS 84 1 2 6 A MET 99 A MET 86 HELX_P A ARG 105 A ARG 92 1 3 7 A ASN 118 A ASN 105 HELX_P A SER 124 A SER 111 1 4 7 A SER 124 A SER 111 HELX_P A LEU 136 A LEU 123 1 5 13 A LEU 152 A LEU 139 HELX_P A ILE 156 A ILE 143 5 6 5 A PRO 159 A PRO 146 HELX_P A HIS 170 A HIS 157 1 7 12 A ASN 181 A ASN 168 HELX_P A ASP 186 A ASP 173 5 8 6 A HIS 187 A HIS 174 HELX_P A ALA 196 A ALA 183 1 9 10 metalc 2.018 A THR 47 A OG1 THR 34 1_555 A MG 203 B MG MG 1_555 metalc 2.072 A THR 65 A OG1 THR 52 1_555 A MG 203 B MG MG 1_555 metalc 2.021 A MG 203 B MG MG 1_555 A GNP 204 C O2G GNP 1_555 metalc 2.003 A MG 203 B MG MG 1_555 A GNP 204 C O2B GNP 1_555 metalc 2.074 A MG 203 B MG MG 1_555 A HOH 210 D O HOH 1_555 metalc 2.068 A MG 203 B MG MG 1_555 A HOH 218 D O HOH 1_555 PROTEIN TRANSPORT Rab GTPase, Rab33b GTPase, vesicular trafficking, protein transport RB33B_MOUSE UNP 1 29 O35963 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA VVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVE AIFMTLAHKLKSH 29 201 1Z06 30 202 O35963 A 1 17 189 1 cloning artifact MET 14 1Z06 A O35963 UNP 1 1 cloning artifact GLY 15 1Z06 A O35963 UNP 2 1 cloning artifact HIS 16 1Z06 A O35963 UNP 3 1 cloning artifact HIS 17 1Z06 A O35963 UNP 4 1 cloning artifact HIS 18 1Z06 A O35963 UNP 5 1 cloning artifact HIS 19 1Z06 A O35963 UNP 6 1 cloning artifact HIS 20 1Z06 A O35963 UNP 7 1 cloning artifact HIS 21 1Z06 A O35963 UNP 8 1 cloning artifact GLY 22 1Z06 A O35963 UNP 9 1 cloning artifact SER 23 1Z06 A O35963 UNP 10 1 cloning artifact LEU 24 1Z06 A O35963 UNP 11 1 cloning artifact VAL 25 1Z06 A O35963 UNP 12 1 cloning artifact PRO 26 1Z06 A O35963 UNP 13 1 cloning artifact ARG 27 1Z06 A O35963 UNP 14 1 cloning artifact GLY 28 1Z06 A O35963 UNP 15 1 cloning artifact SER 29 1Z06 A O35963 UNP 16 6 anti-parallel parallel parallel parallel parallel A PHE 70 A PHE 57 A ILE 77 A ILE 64 A GLU 80 A GLU 67 A ASP 88 A ASP 75 A ILE 33 A ILE 20 A ILE 39 A ILE 26 A ALA 109 A ALA 96 A ASP 115 A ASP 102 A ARG 143 A ARG 130 A ASN 148 A ASN 135 A LEU 174 A LEU 161 A GLU 176 A GLU 163 BINDING SITE FOR RESIDUE MG A 203 A MG 203 Software 5 BINDING SITE FOR RESIDUE GNP A 204 A GNP 204 Software 27 A THR 47 A THR 34 5 1_555 A THR 65 A THR 52 5 1_555 A GNP 204 C GNP 5 1_555 A HOH 210 D HOH 5 1_555 A HOH 218 D HOH 5 1_555 A SER 42 A SER 29 27 1_555 A ASN 43 A ASN 30 27 1_555 A VAL 44 A VAL 31 27 1_555 A GLY 45 A GLY 32 27 1_555 A LYS 46 A LYS 33 27 1_555 A THR 47 A THR 34 27 1_555 A CYS 48 A CYS 35 27 1_555 A PHE 58 A PHE 45 27 1_555 A THR 62 A THR 49 27 1_555 A ALA 64 A ALA 51 27 1_555 A THR 65 A THR 52 27 1_555 A GLY 91 A GLY 78 27 1_555 A ASN 148 A ASN 135 27 1_555 A LYS 149 A LYS 136 27 1_555 A ASP 151 A ASP 138 27 1_555 A LEU 152 A LEU 139 27 1_555 A SER 178 A SER 165 27 1_555 A ALA 179 A ALA 166 27 1_555 A LYS 180 A LYS 167 27 1_555 A MG 203 B MG 27 1_555 A HOH 210 D HOH 27 1_555 A HOH 215 D HOH 27 1_555 A HOH 218 D HOH 27 1_555 A HOH 227 D HOH 27 1_555 A HOH 258 D HOH 27 1_555 A HOH 272 D HOH 27 1_555 A HOH 285 D HOH 27 1_555 145 P 32