0.011674
0.000000
0.000000
0.000000
0.011674
0.000000
0.000000
0.000000
0.011674
0.00000
0.00000
0.00000
Schubot, F.D.
Cherry, S.
Tropea, J.E.
Austin, B.P.
Waugh, D.S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
24
90.00
90.00
90.00
85.662
85.662
85.662
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
C
N
81
N
O
N
82
N
N
N
83
N
O
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
N
N
95
S
C
N
96
N
C
N
97
N
O
N
98
N
C
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
S
C
N
125
N
C
N
126
N
O
N
127
N
C
Y
128
N
C
Y
129
N
N
Y
130
N
C
Y
131
N
C
Y
132
N
N
N
133
N
O
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
O
N
145
N
H
N
146
N
H
N
147
N
N
N
148
S
C
N
149
N
C
N
150
N
O
N
151
S
C
N
152
N
C
N
153
N
C
N
154
N
C
N
155
N
O
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
N
N
170
S
C
N
171
N
C
N
172
N
O
N
173
N
C
N
174
N
C
N
175
N
C
N
176
N
C
N
177
N
O
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
N
N
192
S
C
N
193
N
C
N
194
N
O
N
195
N
C
N
196
N
C
N
197
N
C
N
198
N
C
N
199
N
N
N
200
N
O
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
N
N
217
S
C
N
218
N
C
N
219
N
O
N
220
N
C
N
221
N
C
N
222
N
S
N
223
N
C
N
224
N
O
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
N
N
237
S
C
N
238
N
C
N
239
N
O
N
240
N
C
Y
241
N
C
Y
242
N
C
Y
243
N
C
Y
244
N
C
Y
245
N
C
Y
246
N
C
N
247
N
O
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
N
N
260
S
C
N
261
N
C
N
262
N
O
N
263
N
C
N
264
N
C
N
265
N
C
N
266
N
O
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
N
N
277
S
C
N
278
N
C
N
279
N
O
N
280
N
C
N
281
N
O
N
282
N
O
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
R
C
N
295
N
O
N
296
N
C
N
297
N
O
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
N
N
308
S
C
N
309
N
C
N
310
N
O
N
311
N
C
Y
312
N
C
Y
313
N
C
Y
314
N
C
Y
315
N
N
Y
316
N
C
Y
317
N
C
Y
318
N
C
Y
319
N
C
Y
320
N
C
N
321
N
O
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
N
N
335
S
C
N
336
N
C
N
337
N
O
N
338
N
C
Y
339
N
C
Y
340
N
C
Y
341
N
C
Y
342
N
C
Y
343
N
C
Y
344
N
C
N
345
N
O
N
346
N
O
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
N
N
359
S
C
N
360
N
C
N
361
N
O
N
362
N
C
N
363
N
C
N
364
N
C
N
365
N
O
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
Y
127
N
sing
Y
128
N
doub
Y
129
N
doub
N
130
N
sing
Y
131
N
sing
N
132
N
sing
Y
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
Y
235
N
doub
Y
236
N
sing
Y
237
N
sing
N
238
N
sing
Y
239
N
doub
N
240
N
sing
Y
241
N
doub
N
242
N
sing
Y
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
doub
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
doub
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
doub
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
Y
304
N
doub
Y
305
N
sing
Y
306
N
sing
N
307
N
sing
Y
308
N
doub
Y
309
N
sing
Y
310
N
sing
N
311
N
sing
Y
312
N
sing
Y
313
N
doub
N
314
N
sing
Y
315
N
doub
N
316
N
sing
Y
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
doub
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
Y
332
N
doub
Y
333
N
sing
Y
334
N
sing
N
335
N
sing
Y
336
N
doub
N
337
N
sing
Y
338
N
doub
N
339
N
sing
Y
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
doub
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
US
Protein Sci.
PRCIEI
0795
0961-8368
14
1679
1683
10.1110/ps.051446405
15930010
Crystal structure of the protease-resistant core domain of Yersinia pestis virulence factor YopR.
2005
10.2210/pdb1z21/pdb
pdb_00001z21
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2003-09-15
BRANDEIS
SINGLE WAVELENGTH
M
x-ray
1
1
1.0
X9B
NSLS
1
SYNCHROTRON
NSLS BEAMLINE X9B
12606.379
Yop proteins translocation protein H
YopR(38-149)
1
man
polymer
18.015
water
118
nat
water
Low calcium response locus protein P
no
no
LKSESAEKTREVLWQQYYASNPPDHAVLEVLATPVREALLARFGQHQGSVVPAIDLPELRSVLQQFDSFGKRWEAILLQV
LEGIKPNESQVGLPYLSELINKELMILLPSNS
LKSESAEKTREVLWQQYYASNPPDHAVLEVLATPVREALLARFGQHQGSVVPAIDLPELRSVLQQFDSFGKRWEAILLQV
LEGIKPNESQVGLPYLSELINKELMILLPSNS
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Yersinia
Escherichia
sample
yscH, lcrP
632
Yersinia pestis
562
Escherichia coli
BL31(DE3)CodonPlus-RIL
Plasmid
pDEST-MBP
1
2.1
40.3
VAPOR DIFFUSION, SITTING DROP
4.2
17% PEG-8000, 85 mM Phosphate-citrate, 0.17 M NaCl, and 15% glycerol, pH 4.2, VAPOR DIFFUSION, SITTING DROP, temperature 291K
291
chem_comp_atom
chem_comp_bond
database_2
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
1
0
2005-06-07
1
1
2008-04-30
1
2
2011-07-13
1
3
2024-02-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
RCSB
Y
RCSB
2005-03-07
REL
REL
HOH
water
O
1
2
HOH
HOH
150
A
O
2
2
HOH
HOH
151
A
O
3
2
HOH
HOH
152
A
O
4
2
HOH
HOH
153
A
O
5
2
HOH
HOH
154
A
O
6
2
HOH
HOH
155
A
O
7
2
HOH
HOH
156
A
O
8
2
HOH
HOH
157
A
O
9
2
HOH
HOH
158
A
O
10
2
HOH
HOH
159
A
O
11
2
HOH
HOH
160
A
O
12
2
HOH
HOH
161
A
O
13
2
HOH
HOH
162
A
O
14
2
HOH
HOH
163
A
O
15
2
HOH
HOH
164
A
O
16
2
HOH
HOH
165
A
O
17
2
HOH
HOH
166
A
O
18
2
HOH
HOH
167
A
O
19
2
HOH
HOH
168
A
O
20
2
HOH
HOH
169
A
O
21
2
HOH
HOH
170
A
O
22
2
HOH
HOH
171
A
O
23
2
HOH
HOH
172
A
O
24
2
HOH
HOH
173
A
O
25
2
HOH
HOH
174
A
O
26
2
HOH
HOH
175
A
O
27
2
HOH
HOH
176
A
O
28
2
HOH
HOH
177
A
O
29
2
HOH
HOH
178
A
O
31
2
HOH
HOH
179
A
O
32
2
HOH
HOH
180
A
O
33
2
HOH
HOH
181
A
O
34
2
HOH
HOH
182
A
O
35
2
HOH
HOH
183
A
O
36
2
HOH
HOH
184
A
O
37
2
HOH
HOH
185
A
O
38
2
HOH
HOH
186
A
O
39
2
HOH
HOH
187
A
O
40
2
HOH
HOH
188
A
O
41
2
HOH
HOH
189
A
O
42
2
HOH
HOH
190
A
O
43
2
HOH
HOH
191
A
O
44
2
HOH
HOH
192
A
O
45
2
HOH
HOH
193
A
O
46
2
HOH
HOH
194
A
O
47
2
HOH
HOH
195
A
O
48
2
HOH
HOH
196
A
O
49
2
HOH
HOH
197
A
O
50
2
HOH
HOH
198
A
O
51
2
HOH
HOH
199
A
O
52
2
HOH
HOH
200
A
O
53
2
HOH
HOH
201
A
O
54
2
HOH
HOH
202
A
O
55
2
HOH
HOH
203
A
O
56
2
HOH
HOH
204
A
O
57
2
HOH
HOH
205
A
O
58
2
HOH
HOH
206
A
O
59
2
HOH
HOH
207
A
O
60
2
HOH
HOH
208
A
O
61
2
HOH
HOH
209
A
O
62
2
HOH
HOH
210
A
O
63
2
HOH
HOH
211
A
O
64
2
HOH
HOH
212
A
O
65
2
HOH
HOH
213
A
O
66
2
HOH
HOH
214
A
O
67
2
HOH
HOH
215
A
O
68
2
HOH
HOH
216
A
O
69
2
HOH
HOH
217
A
O
70
2
HOH
HOH
218
A
O
71
2
HOH
HOH
219
A
O
72
2
HOH
HOH
220
A
O
73
2
HOH
HOH
221
A
O
75
2
HOH
HOH
222
A
O
76
2
HOH
HOH
223
A
O
77
2
HOH
HOH
224
A
O
78
2
HOH
HOH
225
A
O
79
2
HOH
HOH
226
A
O
80
2
HOH
HOH
227
A
O
81
2
HOH
HOH
228
A
O
82
2
HOH
HOH
229
A
O
83
2
HOH
HOH
230
A
O
84
2
HOH
HOH
231
A
O
85
2
HOH
HOH
232
A
O
86
2
HOH
HOH
233
A
O
87
2
HOH
HOH
234
A
O
88
2
HOH
HOH
235
A
O
89
2
HOH
HOH
236
A
O
90
2
HOH
HOH
237
A
O
91
2
HOH
HOH
238
A
O
92
2
HOH
HOH
239
A
O
93
2
HOH
HOH
240
A
O
94
2
HOH
HOH
241
A
O
95
2
HOH
HOH
242
A
O
96
2
HOH
HOH
243
A
O
98
2
HOH
HOH
244
A
O
99
2
HOH
HOH
245
A
O
100
2
HOH
HOH
246
A
O
101
2
HOH
HOH
247
A
O
102
2
HOH
HOH
248
A
O
103
2
HOH
HOH
249
A
O
104
2
HOH
HOH
250
A
O
105
2
HOH
HOH
251
A
O
107
2
HOH
HOH
252
A
O
108
2
HOH
HOH
253
A
O
110
2
HOH
HOH
254
A
O
111
2
HOH
HOH
255
A
O
112
2
HOH
HOH
256
A
O
113
2
HOH
HOH
257
A
O
114
2
HOH
HOH
258
A
O
115
2
HOH
HOH
259
A
O
116
2
HOH
HOH
260
A
O
117
2
HOH
HOH
261
A
O
118
2
HOH
HOH
262
A
O
119
2
HOH
HOH
263
A
O
120
2
HOH
HOH
264
A
O
121
2
HOH
HOH
265
A
O
122
2
HOH
HOH
266
A
O
123
2
HOH
HOH
267
A
n
1
38
A
n
2
39
A
n
3
40
A
n
4
41
A
SER
42
n
5
SER
42
A
ALA
43
n
6
ALA
43
A
GLU
44
n
7
GLU
44
A
LYS
45
n
8
LYS
45
A
THR
46
n
9
THR
46
A
ARG
47
n
10
ARG
47
A
GLU
48
n
11
GLU
48
A
VAL
49
n
12
VAL
49
A
LEU
50
n
13
LEU
50
A
TRP
51
n
14
TRP
51
A
GLN
52
n
15
GLN
52
A
GLN
53
n
16
GLN
53
A
TYR
54
n
17
TYR
54
A
TYR
55
n
18
TYR
55
A
ALA
56
n
19
ALA
56
A
SER
57
n
20
SER
57
A
ASN
58
n
21
ASN
58
A
PRO
59
n
22
PRO
59
A
PRO
60
n
23
PRO
60
A
ASP
61
n
24
ASP
61
A
HIS
62
n
25
HIS
62
A
ALA
63
n
26
ALA
63
A
VAL
64
n
27
VAL
64
A
LEU
65
n
28
LEU
65
A
GLU
66
n
29
GLU
66
A
VAL
67
n
30
VAL
67
A
LEU
68
n
31
LEU
68
A
ALA
69
n
32
ALA
69
A
THR
70
n
33
THR
70
A
PRO
71
n
34
PRO
71
A
VAL
72
n
35
VAL
72
A
ARG
73
n
36
ARG
73
A
GLU
74
n
37
GLU
74
A
ALA
75
n
38
ALA
75
A
LEU
76
n
39
LEU
76
A
LEU
77
n
40
LEU
77
A
ALA
78
n
41
ALA
78
A
ARG
79
n
42
ARG
79
A
PHE
80
n
43
PHE
80
A
GLY
81
n
44
GLY
81
A
GLN
82
n
45
GLN
82
A
HIS
83
n
46
HIS
83
A
GLN
84
n
47
GLN
84
A
GLY
85
n
48
GLY
85
A
SER
86
n
49
SER
86
A
VAL
87
n
50
VAL
87
A
VAL
88
n
51
VAL
88
A
PRO
89
n
52
PRO
89
A
ALA
90
n
53
ALA
90
A
ILE
91
n
54
ILE
91
A
ASP
92
n
55
ASP
92
A
LEU
93
n
56
LEU
93
A
PRO
94
n
57
PRO
94
A
GLU
95
n
58
GLU
95
A
LEU
96
n
59
LEU
96
A
ARG
97
n
60
ARG
97
A
SER
98
n
61
SER
98
A
VAL
99
n
62
VAL
99
A
LEU
100
n
63
LEU
100
A
GLN
101
n
64
GLN
101
A
GLN
102
n
65
GLN
102
A
PHE
103
n
66
PHE
103
A
ASP
104
n
67
ASP
104
A
SER
105
n
68
SER
105
A
PHE
106
n
69
PHE
106
A
GLY
107
n
70
GLY
107
A
LYS
108
n
71
LYS
108
A
ARG
109
n
72
ARG
109
A
TRP
110
n
73
TRP
110
A
GLU
111
n
74
GLU
111
A
ALA
112
n
75
ALA
112
A
ILE
113
n
76
ILE
113
A
LEU
114
n
77
LEU
114
A
LEU
115
n
78
LEU
115
A
GLN
116
n
79
GLN
116
A
VAL
117
n
80
VAL
117
A
LEU
118
n
81
LEU
118
A
GLU
119
n
82
GLU
119
A
GLY
120
n
83
GLY
120
A
ILE
121
n
84
ILE
121
A
n
85
122
A
n
86
123
A
n
87
124
A
n
88
125
A
n
89
126
A
n
90
127
A
n
91
128
A
n
92
129
A
LEU
130
n
93
LEU
130
A
PRO
131
n
94
PRO
131
A
TYR
132
n
95
TYR
132
A
LEU
133
n
96
LEU
133
A
SER
134
n
97
SER
134
A
GLU
135
n
98
GLU
135
A
LEU
136
n
99
LEU
136
A
ILE
137
n
100
ILE
137
A
ASN
138
n
101
ASN
138
A
LYS
139
n
102
LYS
139
A
GLU
140
n
103
GLU
140
A
LEU
141
n
104
LEU
141
A
MET
142
n
105
MET
142
A
ILE
143
n
106
ILE
143
A
LEU
144
n
107
LEU
144
A
LEU
145
n
108
LEU
145
A
n
109
146
A
n
110
147
A
n
111
148
A
n
112
149
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
HOH
209
B
HOH
1
A
HOH
223
B
HOH
1
A
HOH
224
B
HOH
1
A
HOH
259
B
HOH
1
A
CG
GLU
44
A
CG
GLU
7
0
Y
1
A
CG
LYS
45
A
CG
LYS
8
0
Y
1
A
CD
LYS
45
A
CD
LYS
8
0
Y
1
A
NH1
ARG
47
A
NH1
ARG
10
0
Y
1
A
NH1
ARG
79
A
NH1
ARG
42
0
Y
1
A
CB
GLN
82
A
CB
GLN
45
0
Y
1
A
CG
GLN
82
A
CG
GLN
45
0
Y
1
A
LEU
38
A
LEU
1
1
Y
1
A
LYS
39
A
LYS
2
1
Y
1
A
SER
40
A
SER
3
1
Y
1
A
GLU
41
A
GLU
4
1
Y
1
A
LYS
122
A
LYS
85
1
Y
1
A
PRO
123
A
PRO
86
1
Y
1
A
ASN
124
A
ASN
87
1
Y
1
A
GLU
125
A
GLU
88
1
Y
1
A
SER
126
A
SER
89
1
Y
1
A
GLN
127
A
GLN
90
1
Y
1
A
VAL
128
A
VAL
91
1
Y
1
A
GLY
129
A
GLY
92
1
Y
1
A
PRO
146
A
PRO
109
1
Y
1
A
SER
147
A
SER
110
1
Y
1
A
ASN
148
A
ASN
111
1
Y
1
A
SER
149
A
SER
112
1
Y
1
A
A
NH1
O
ARG
HOH
47
267
0.61
1
A
A
CZ
O
ARG
HOH
47
267
1.76
1
-8.69
1.10
119.40
110.71
A
A
A
NH1
CZ
NH2
ARG
ARG
ARG
47
47
47
N
1
5.63
0.50
120.30
125.93
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
47
47
47
N
1
A
A
CZ
NH1
ARG
ARG
47
47
-0.124
0.013
1.326
1.202
N
21.596
0.953
0.936
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.23833
0.20357
0.2691
0.20526
1.499
22.81
640
17807
12054
5.0
71.36
2.544
0.082
RANDOM
1
THROUGHOUT
2
MIR
0.112
0.110
0.80
0.80
1.40
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
1.499
22.81
118
889
0
0
771
0.008
0.021
777
0.002
0.020
731
1.019
1.978
1052
0.743
3.000
1692
4.588
5.000
94
0.057
0.200
123
0.006
0.020
840
0.008
0.020
145
0.250
0.200
310
0.222
0.200
857
0.084
0.200
430
0.216
0.200
21
0.277
0.200
51
0.177
0.200
40
0.180
0.200
1
0.667
1.500
479
1.285
2.000
770
1.762
3.000
298
3.013
4.500
282
0.29
0.405
1.539
19
327
20
1.50
22.82
1Z21
17699
17807
2
0
0.036
0.036
1
46.1
4.5
99.3
1.5
1.54
97.5
refinement
REFMAC
5.1.24
data reduction
HKL-2000
data scaling
SCALEPACK
phasing
SOLVE
Crystal structure of the core domain of Yersinia pestis virulence factor YopR
1
N
N
2
N
N
A
SER
42
A
SER
5
HELX_P
A
SER
57
A
SER
20
1
1
16
A
ASP
61
A
ASP
24
HELX_P
A
GLY
81
A
GLY
44
1
2
21
A
VAL
88
A
VAL
51
HELX_P
A
ASP
104
A
ASP
67
1
3
17
A
GLY
107
A
GLY
70
HELX_P
A
GLY
120
A
GLY
83
1
4
14
A
LEU
130
A
LEU
93
HELX_P
A
LEU
145
A
LEU
108
1
5
16
CELL INVASION
Yersinia pestis, plague, type III secretion, YopR, yop, CELL INVASION
A
ASN
58
A
ASN
21
1
A
PRO
59
A
PRO
22
-0.55
YSCH_YERPE
UNP
1
38
P68590
LKSESAEKTREVLWQQYYASNPPDHAVLEVLATPVREALLARFGQHQGSVVPAIDLPELRSVLQQFDSFGKRWEAILLQV
LEGIKPNESQVGLPYLSELINKELMILLPSNS
38
149
1Z21
38
149
P68590
A
1
1
112
213
P 41 3 2