0.024826 0.000000 -0.000005 0.000000 0.016276 0.000000 0.000000 0.000000 0.015661 0.00000 0.00000 0.00000 Eathiraj, S. Pan, X. Ritacco, C. Lambright, D.G. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 89.99 90.00 40.281 61.440 63.854 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H15 N5 O11 P2 443.201 n GUANOSINE-5'-DIPHOSPHATE RNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Mg 2 24.305 MAGNESIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N P N 89 N O N 90 N O N 91 N O N 92 N O N 93 N P N 94 N O N 95 N O N 96 N O N 97 N C N 98 R C N 99 N O N 100 S C N 101 N O N 102 R C N 103 N O N 104 R C Y 105 N N Y 106 N C Y 107 N N Y 108 N C N 109 N C N 110 N O N 111 N N N 112 N C N 113 N N N 114 N N Y 115 N C N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N N N 132 S C N 133 N C N 134 N O N 135 N C N 136 N C N 137 N C N 138 N O N 139 N N N 140 N O N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N N N 152 S C N 153 N C N 154 N O N 155 N C N 156 N C N 157 N C N 158 N O N 159 N O N 160 N O N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N N N 171 N C N 172 N C N 173 N O N 174 N O N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N N N 181 S C N 182 N C N 183 N O N 184 N C Y 185 N C Y 186 N N Y 187 N C Y 188 N C Y 189 N N N 190 N O N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N O N 202 N H N 203 N H N 204 N N N 205 S C N 206 N C N 207 N O N 208 S C N 209 N C N 210 N C N 211 N C N 212 N O N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N N N 227 S C N 228 N C N 229 N O N 230 N C N 231 N C N 232 N C N 233 N C N 234 N O N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N N N 249 S C N 250 N C N 251 N O N 252 N C N 253 N C N 254 N C N 255 N C N 256 N N N 257 N O N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N S N 280 N C N 281 N O N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N MG N 294 N N N 295 S C N 296 N C N 297 N O N 298 N C Y 299 N C Y 300 N C Y 301 N C Y 302 N C Y 303 N C Y 304 N C N 305 N O N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N N N 318 S C N 319 N C N 320 N O N 321 N C N 322 N C N 323 N C N 324 N O N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N N N 335 S C N 336 N C N 337 N O N 338 N C N 339 N O N 340 N O N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N N N 349 S C N 350 N C N 351 N O N 352 R C N 353 N O N 354 N C N 355 N O N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N N N 366 S C N 367 N C N 368 N O N 369 N C Y 370 N C Y 371 N C Y 372 N C Y 373 N N Y 374 N C Y 375 N C Y 376 N C Y 377 N C Y 378 N C N 379 N O N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N N N 393 S C N 394 N C N 395 N O N 396 N C Y 397 N C Y 398 N C Y 399 N C Y 400 N C Y 401 N C Y 402 N C N 403 N O N 404 N O N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N N N 417 S C N 418 N C N 419 N O N 420 N C N 421 N C N 422 N C N 423 N O N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N doub N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N doub N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing Y 112 N sing Y 113 N sing Y 114 N doub N 115 N sing Y 116 N sing N 117 N sing Y 118 N doub N 119 N doub N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N doub N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N doub N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N doub N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N doub N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N doub N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N doub N 181 N sing N 182 N sing N 183 N sing N 184 N sing Y 185 N sing Y 186 N doub Y 187 N doub N 188 N sing Y 189 N sing N 190 N sing Y 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N doub N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N doub N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N doub N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N doub N 289 N sing N 290 N sing N 291 N sing N 292 N sing Y 293 N doub Y 294 N sing Y 295 N sing N 296 N sing Y 297 N doub N 298 N sing Y 299 N doub N 300 N sing Y 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N doub N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N doub N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N doub N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N doub N 358 N sing N 359 N sing N 360 N sing N 361 N sing Y 362 N doub Y 363 N sing Y 364 N sing N 365 N sing Y 366 N doub Y 367 N sing Y 368 N sing N 369 N sing Y 370 N sing Y 371 N doub N 372 N sing Y 373 N doub N 374 N sing Y 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N doub N 386 N sing N 387 N sing N 388 N sing N 389 N sing Y 390 N doub Y 391 N sing Y 392 N sing N 393 N sing Y 394 N doub N 395 N sing Y 396 N doub N 397 N sing Y 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N doub N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing UK Nature NATUAS 0006 0028-0836 436 415 419 10.1038/nature03798 16034420 Structural basis of family-wide Rab GTPase recognition by rabenosyn-5. 2005 10.2210/pdb1z2a/pdb pdb_00001z2a 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 IMAGE PLATE 2004-03-30 MAR scanner 300 mm plate Osmic mirror SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RUH3R 19066.770 Ras-related protein Rab-23 1 man polymer 24.305 MAGNESIUM ION 1 syn non-polymer 443.201 GUANOSINE-5'-DIPHOSPHATE 1 syn non-polymer 18.015 water 94 nat water no no GSEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQA CVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKY LAEKHLQK GSEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQA CVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKY LAEKHLQK A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n house mouse Mus Escherichia sample Rab23 10090 Mus musculus 562 Escherichia coli BL21 (DE3) Codon Plus-RIL Cells GST Fusion, pGEX pGEX4T1 1 2.14 41.97 VAPOR DIFFUSION, HANGING DROP 5.0 15% PEG 6000, 50mM Na acetate, pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K 277 chem_comp_atom chem_comp_bond database_2 pdbx_struct_conn_angle struct_conn struct_ref_seq_dif struct_site pdbx_initial_refinement_model repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Refinement description 1 0 2005-07-26 1 1 2008-04-30 1 2 2011-07-13 1 3 2024-02-14 1 4 2024-04-03 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2005-03-07 REL REL MG MAGNESIUM ION GDP GUANOSINE-5'-DIPHOSPHATE HOH water Polyalanine Rab3a Other experimental model MG 300 2 MG MG 300 A GDP 201 3 GDP GDP 201 A HOH 2 4 HOH HOH 301 A HOH 5 4 HOH HOH 302 A HOH 8 4 HOH HOH 303 A HOH 9 4 HOH HOH 304 A HOH 10 4 HOH HOH 305 A HOH 14 4 HOH HOH 306 A HOH 17 4 HOH HOH 307 A HOH 18 4 HOH HOH 308 A HOH 21 4 HOH HOH 309 A HOH 23 4 HOH HOH 310 A HOH 25 4 HOH HOH 311 A HOH 26 4 HOH HOH 312 A HOH 27 4 HOH HOH 313 A HOH 30 4 HOH HOH 314 A HOH 31 4 HOH HOH 315 A HOH 32 4 HOH HOH 316 A HOH 36 4 HOH HOH 317 A HOH 37 4 HOH HOH 318 A HOH 39 4 HOH HOH 319 A HOH 44 4 HOH HOH 320 A HOH 47 4 HOH HOH 321 A HOH 48 4 HOH HOH 322 A HOH 49 4 HOH HOH 323 A HOH 51 4 HOH HOH 324 A HOH 55 4 HOH HOH 325 A HOH 57 4 HOH HOH 326 A HOH 60 4 HOH HOH 327 A HOH 61 4 HOH HOH 328 A HOH 65 4 HOH HOH 329 A HOH 66 4 HOH HOH 330 A HOH 67 4 HOH HOH 331 A HOH 68 4 HOH HOH 332 A HOH 69 4 HOH HOH 333 A HOH 74 4 HOH HOH 334 A HOH 75 4 HOH HOH 335 A HOH 78 4 HOH HOH 336 A HOH 81 4 HOH HOH 337 A HOH 82 4 HOH HOH 338 A HOH 83 4 HOH HOH 339 A HOH 86 4 HOH HOH 340 A HOH 88 4 HOH HOH 341 A HOH 89 4 HOH HOH 342 A HOH 101 4 HOH HOH 343 A HOH 106 4 HOH HOH 344 A HOH 107 4 HOH HOH 345 A HOH 108 4 HOH HOH 346 A HOH 109 4 HOH HOH 347 A HOH 111 4 HOH HOH 348 A HOH 112 4 HOH HOH 349 A HOH 113 4 HOH HOH 350 A HOH 115 4 HOH HOH 351 A HOH 116 4 HOH HOH 352 A HOH 117 4 HOH HOH 353 A HOH 119 4 HOH HOH 354 A HOH 121 4 HOH HOH 355 A HOH 122 4 HOH HOH 356 A HOH 123 4 HOH HOH 357 A HOH 126 4 HOH HOH 358 A HOH 127 4 HOH HOH 359 A HOH 128 4 HOH HOH 360 A HOH 129 4 HOH HOH 361 A HOH 130 4 HOH HOH 362 A HOH 131 4 HOH HOH 363 A HOH 132 4 HOH HOH 364 A HOH 134 4 HOH HOH 365 A HOH 136 4 HOH HOH 366 A HOH 137 4 HOH HOH 367 A HOH 140 4 HOH HOH 368 A HOH 141 4 HOH HOH 369 A HOH 142 4 HOH HOH 370 A HOH 143 4 HOH HOH 371 A HOH 144 4 HOH HOH 372 A HOH 145 4 HOH HOH 373 A HOH 146 4 HOH HOH 374 A HOH 147 4 HOH HOH 375 A HOH 148 4 HOH HOH 376 A HOH 149 4 HOH HOH 377 A HOH 152 4 HOH HOH 378 A HOH 153 4 HOH HOH 379 A HOH 155 4 HOH HOH 380 A HOH 159 4 HOH HOH 381 A HOH 161 4 HOH HOH 382 A HOH 163 4 HOH HOH 383 A HOH 165 4 HOH HOH 384 A HOH 166 4 HOH HOH 385 A HOH 167 4 HOH HOH 386 A HOH 168 4 HOH HOH 387 A HOH 172 4 HOH HOH 388 A HOH 173 4 HOH HOH 389 A HOH 174 4 HOH HOH 390 A HOH 176 4 HOH HOH 391 A HOH 177 4 HOH HOH 392 A HOH 178 4 HOH HOH 393 A HOH 180 4 HOH HOH 394 A n 1 5 A n 2 6 A n 3 7 A VAL 8 n 4 VAL 8 A ALA 9 n 5 ALA 9 A ILE 10 n 6 ILE 10 A LYS 11 n 7 LYS 11 A MET 12 n 8 MET 12 A VAL 13 n 9 VAL 13 A VAL 14 n 10 VAL 14 A VAL 15 n 11 VAL 15 A GLY 16 n 12 GLY 16 A ASN 17 n 13 ASN 17 A GLY 18 n 14 GLY 18 A ALA 19 n 15 ALA 19 A VAL 20 n 16 VAL 20 A GLY 21 n 17 GLY 21 A LYS 22 n 18 LYS 22 A SER 23 n 19 SER 23 A SER 24 n 20 SER 24 A MET 25 n 21 MET 25 A ILE 26 n 22 ILE 26 A GLN 27 n 23 GLN 27 A ARG 28 n 24 ARG 28 A TYR 29 n 25 TYR 29 A CYS 30 n 26 CYS 30 A LYS 31 n 27 LYS 31 A GLY 32 n 28 GLY 32 A ILE 33 n 29 ILE 33 A PHE 34 n 30 PHE 34 A THR 35 n 31 THR 35 A LYS 36 n 32 LYS 36 A ASP 37 n 33 ASP 37 A TYR 38 n 34 TYR 38 A ALA 39 n 35 LYS 39 A LYS 40 n 36 LYS 40 A THR 41 n 37 THR 41 A ILE 42 n 38 ILE 42 A GLY 43 n 39 GLY 43 A VAL 44 n 40 VAL 44 A ASP 45 n 41 ASP 45 A PHE 46 n 42 PHE 46 A LEU 47 n 43 LEU 47 A GLU 48 n 44 GLU 48 A ARG 49 n 45 ARG 49 A GLN 50 n 46 GLN 50 A ILE 51 n 47 ILE 51 A ALA 52 n 48 GLN 52 A VAL 53 n 49 VAL 53 A ASN 54 n 50 ASN 54 A ASP 55 n 51 ASP 55 A GLU 56 n 52 GLU 56 A ASP 57 n 53 ASP 57 A VAL 58 n 54 VAL 58 A ARG 59 n 55 ARG 59 A LEU 60 n 56 LEU 60 A MET 61 n 57 MET 61 A LEU 62 n 58 LEU 62 A TRP 63 n 59 TRP 63 A ASP 64 n 60 ASP 64 A THR 65 n 61 THR 65 A ALA 66 n 62 ALA 66 A GLY 67 n 63 GLY 67 A GLN 68 n 64 GLN 68 A GLU 69 n 65 GLU 69 A GLU 70 n 66 GLU 70 A PHE 71 n 67 PHE 71 A ASP 72 n 68 ASP 72 A ALA 73 n 69 ALA 73 A ILE 74 n 70 ILE 74 A THR 75 n 71 THR 75 A LYS 76 n 72 LYS 76 A ALA 77 n 73 ALA 77 A TYR 78 n 74 TYR 78 A TYR 79 n 75 TYR 79 A ARG 80 n 76 ARG 80 A GLY 81 n 77 GLY 81 A ALA 82 n 78 ALA 82 A GLN 83 n 79 GLN 83 A ALA 84 n 80 ALA 84 A CYS 85 n 81 CYS 85 A VAL 86 n 82 VAL 86 A LEU 87 n 83 LEU 87 A VAL 88 n 84 VAL 88 A PHE 89 n 85 PHE 89 A SER 90 n 86 SER 90 A THR 91 n 87 THR 91 A THR 92 n 88 THR 92 A ASP 93 n 89 ASP 93 A ARG 94 n 90 ARG 94 A GLU 95 n 91 GLU 95 A SER 96 n 92 SER 96 A PHE 97 n 93 PHE 97 A GLU 98 n 94 GLU 98 A ALA 99 n 95 ALA 99 A ILE 100 n 96 ILE 100 A SER 101 n 97 SER 101 A SER 102 n 98 SER 102 A TRP 103 n 99 TRP 103 A ARG 104 n 100 ARG 104 A GLU 105 n 101 GLU 105 A LYS 106 n 102 LYS 106 A VAL 107 n 103 VAL 107 A VAL 108 n 104 VAL 108 A ALA 109 n 105 ALA 109 A GLU 110 n 106 GLU 110 A VAL 111 n 107 VAL 111 A GLY 112 n 108 GLY 112 A ASP 113 n 109 ASP 113 A ILE 114 n 110 ILE 114 A PRO 115 n 111 PRO 115 A THR 116 n 112 THR 116 A ALA 117 n 113 ALA 117 A LEU 118 n 114 LEU 118 A VAL 119 n 115 VAL 119 A GLN 120 n 116 GLN 120 A ASN 121 n 117 ASN 121 A LYS 122 n 118 LYS 122 A ILE 123 n 119 ILE 123 A ASP 124 n 120 ASP 124 A LEU 125 n 121 LEU 125 A LEU 126 n 122 LEU 126 A ASP 127 n 123 ASP 127 A ASP 128 n 124 ASP 128 A SER 129 n 125 SER 129 A CYS 130 n 126 CYS 130 A ILE 131 n 127 ILE 131 A ALA 132 n 128 LYS 132 A ASN 133 n 129 ASN 133 A ALA 134 n 130 GLU 134 A GLU 135 n 131 GLU 135 A ALA 136 n 132 ALA 136 A GLU 137 n 133 GLU 137 A GLY 138 n 134 GLY 138 A LEU 139 n 135 LEU 139 A ALA 140 n 136 ALA 140 A LYS 141 n 137 LYS 141 A ARG 142 n 138 ARG 142 A LEU 143 n 139 LEU 143 A LYS 144 n 140 LYS 144 A LEU 145 n 141 LEU 145 A ARG 146 n 142 ARG 146 A PHE 147 n 143 PHE 147 A TYR 148 n 144 TYR 148 A ARG 149 n 145 ARG 149 A THR 150 n 146 THR 150 A SER 151 n 147 SER 151 A VAL 152 n 148 VAL 152 A LYS 153 n 149 LYS 153 A GLU 154 n 150 GLU 154 A ASP 155 n 151 ASP 155 A LEU 156 n 152 LEU 156 A ASN 157 n 153 ASN 157 A VAL 158 n 154 VAL 158 A SER 159 n 155 SER 159 A GLU 160 n 156 GLU 160 A VAL 161 n 157 VAL 161 A PHE 162 n 158 PHE 162 A LYS 163 n 159 LYS 163 A TYR 164 n 160 TYR 164 A LEU 165 n 161 LEU 165 A ALA 166 n 162 ALA 166 A GLU 167 n 163 GLU 167 A LYS 168 n 164 LYS 168 A HIS 169 n 165 HIS 169 A LEU 170 n 166 LEU 170 A GLN 171 n 167 GLN 171 A n 168 172 A author_defined_assembly 1 monomeric A SER 23 A OG SER 19 1_555 A MG 300 B MG MG 1_555 A GDP 201 C O3B GDP 1_555 91.2 A SER 23 A OG SER 19 1_555 A MG 300 B MG MG 1_555 A HOH 310 D O HOH 1_555 91.7 A GDP 201 C O3B GDP 1_555 A MG 300 B MG MG 1_555 A HOH 310 D O HOH 1_555 90.3 A SER 23 A OG SER 19 1_555 A MG 300 B MG MG 1_555 A HOH 313 D O HOH 1_555 174.2 A GDP 201 C O3B GDP 1_555 A MG 300 B MG MG 1_555 A HOH 313 D O HOH 1_555 91.3 A HOH 310 D O HOH 1_555 A MG 300 B MG MG 1_555 A HOH 313 D O HOH 1_555 93.5 A SER 23 A OG SER 19 1_555 A MG 300 B MG MG 1_555 A HOH 314 D O HOH 1_555 84.3 A GDP 201 C O3B GDP 1_555 A MG 300 B MG MG 1_555 A HOH 314 D O HOH 1_555 87.8 A HOH 310 D O HOH 1_555 A MG 300 B MG MG 1_555 A HOH 314 D O HOH 1_555 175.5 A HOH 313 D O HOH 1_555 A MG 300 B MG MG 1_555 A HOH 314 D O HOH 1_555 90.6 A SER 23 A OG SER 19 1_555 A MG 300 B MG MG 1_555 A HOH 324 D O HOH 1_555 83.6 A GDP 201 C O3B GDP 1_555 A MG 300 B MG MG 1_555 A HOH 324 D O HOH 1_555 174.7 A HOH 310 D O HOH 1_555 A MG 300 B MG MG 1_555 A HOH 324 D O HOH 1_555 91.2 A HOH 313 D O HOH 1_555 A MG 300 B MG MG 1_555 A HOH 324 D O HOH 1_555 93.7 A HOH 314 D O HOH 1_555 A MG 300 B MG MG 1_555 A HOH 324 D O HOH 1_555 90.4 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N VAL 53 A N VAL 49 A O GLU 56 A O GLU 52 A O MET 61 A O MET 57 A N ILE 10 A N ILE 6 A N VAL 15 A N VAL 11 A O VAL 88 A O VAL 84 A N LEU 87 A N LEU 83 A O VAL 119 A O VAL 115 A N LEU 118 A N LEU 114 A O ARG 146 A O ARG 142 1 A CG LYS 39 A CG LYS 35 1 Y 1 A CD LYS 39 A CD LYS 35 1 Y 1 A CE LYS 39 A CE LYS 35 1 Y 1 A NZ LYS 39 A NZ LYS 35 1 Y 1 A CG GLN 52 A CG GLN 48 1 Y 1 A CD GLN 52 A CD GLN 48 1 Y 1 A OE1 GLN 52 A OE1 GLN 48 1 Y 1 A NE2 GLN 52 A NE2 GLN 48 1 Y 1 A CG LYS 132 A CG LYS 128 1 Y 1 A CD LYS 132 A CD LYS 128 1 Y 1 A CE LYS 132 A CE LYS 128 1 Y 1 A NZ LYS 132 A NZ LYS 128 1 Y 1 A CG GLU 134 A CG GLU 130 1 Y 1 A CD GLU 134 A CD GLU 130 1 Y 1 A OE1 GLU 134 A OE1 GLU 130 1 Y 1 A OE2 GLU 134 A OE2 GLU 130 1 Y 1 A GLY 5 A GLY 1 1 Y 1 A SER 6 A SER 2 1 Y 1 A GLU 7 A GLU 3 1 Y 1 A LYS 172 A LYS 168 1 Y 1 A ALA 73 -147.63 27.74 1 A LEU 125 -107.36 46.91 1 A VAL 158 -107.11 -60.38 25.353 -0.76 0.00 0.00 1.44 0.00 -0.67 0.935 0.909 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.27761 0.22982 0.243 0.2322 1.90 8.00 600 12522 11684 4.9 96.21 RANDOM 1 THROUGHOUT 0 MOLECULAR REPLACEMENT 0.189 0.80 0.80 1.20 Polyalanine Rab3a MAXIMUM LIKELIHOOD MASK 1.90 8.00 94 1416 29 0 1293 0.009 0.022 1340 1.085 1.982 1813 5.276 5.000 163 33.267 24.426 61 14.512 15.000 241 15.147 15.000 9 0.062 0.200 207 0.003 0.020 980 0.177 0.200 529 0.294 0.200 905 0.129 0.200 73 0.174 0.200 25 0.169 0.200 12 0.462 1.500 844 0.807 2.000 1303 0.996 3.000 587 1.670 4.500 510 0.354 0.339 1.949 37 691 20 81.71 34.8 1.90 50.0 1Z2A 12482 12522 0 0 0.044 1 24.5 4 95.9 1.90 1.96 5.3 834 0.268 4 79.4 refinement REFMAC 5.2.0005 data reduction DENZO data scaling SCALEPACK phasing AMoRE GDP-Bound Rab23 GTPase crystallized in P2(1)2(1)2(1) space group 1 N N 2 N N 3 N N 4 N N A GLY 21 A GLY 17 HELX_P A GLY 32 A GLY 28 1 1 12 A GLY 67 A GLY 63 HELX_P A PHE 71 A PHE 67 5 2 5 A THR 75 A THR 71 HELX_P A ARG 80 A ARG 76 1 3 6 A ASP 93 A ASP 89 HELX_P A ALA 99 A ALA 95 1 4 7 A ALA 99 A ALA 95 HELX_P A GLY 112 A GLY 108 1 5 14 A LYS 122 A LYS 118 HELX_P A SER 129 A SER 125 5 6 8 A LYS 132 A LYS 128 HELX_P A LYS 144 A LYS 140 1 7 13 A VAL 158 A VAL 154 HELX_P A GLN 171 A GLN 167 1 8 14 metalc 2.133 A SER 23 A OG SER 19 1_555 A MG 300 B MG MG 1_555 metalc 2.079 A GDP 201 C O3B GDP 1_555 A MG 300 B MG MG 1_555 metalc 2.085 A MG 300 B MG MG 1_555 A HOH 310 D O HOH 1_555 metalc 2.198 A MG 300 B MG MG 1_555 A HOH 313 D O HOH 1_555 metalc 2.086 A MG 300 B MG MG 1_555 A HOH 314 D O HOH 1_555 metalc 2.296 A MG 300 B MG MG 1_555 A HOH 324 D O HOH 1_555 PROTEIN TRANSPORT Rab GTPase, Rab23, Vesicular trafficking, Protein Transport RAB23_MOUSE UNP 1 7 P35288 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV LVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLA EKHLQK 7 172 1Z2A 7 172 P35288 A 1 3 168 1 cloning artifact GLY 5 1Z2A A P35288 UNP 1 1 cloning artifact SER 6 1Z2A A P35288 UNP 2 6 anti-parallel parallel parallel parallel parallel A PHE 46 A PHE 42 A VAL 53 A VAL 49 A GLU 56 A GLU 52 A TRP 63 A TRP 59 A ALA 9 A ALA 5 A VAL 15 A VAL 11 A ALA 84 A ALA 80 A SER 90 A SER 86 A THR 116 A THR 112 A ASN 121 A ASN 117 A ARG 146 A ARG 142 A ARG 149 A ARG 145 BINDING SITE FOR RESIDUE MG A 300 A MG 300 Software 6 BINDING SITE FOR RESIDUE GDP A 201 A GDP 201 Software 23 A SER 23 A SER 19 6 1_555 A GDP 201 C GDP 6 1_555 A HOH 310 D HOH 6 1_555 A HOH 313 D HOH 6 1_555 A HOH 314 D HOH 6 1_555 A HOH 324 D HOH 6 1_555 A ALA 19 A ALA 15 23 1_555 A VAL 20 A VAL 16 23 1_555 A GLY 21 A GLY 17 23 1_555 A LYS 22 A LYS 18 23 1_555 A SER 23 A SER 19 23 1_555 A SER 24 A SER 20 23 1_555 A PHE 34 A PHE 30 23 1_555 A ASP 37 A ASP 33 23 1_555 A TYR 38 A TYR 34 23 1_555 A LYS 40 A LYS 36 23 1_555 A ASN 121 A ASN 117 23 1_555 A LYS 122 A LYS 118 23 1_555 A ASP 124 A ASP 120 23 1_555 A SER 151 A SER 147 23 1_555 A VAL 152 A VAL 148 23 1_555 A LYS 153 A LYS 149 23 1_555 A MG 300 B MG 23 1_555 A HOH 310 D HOH 23 1_555 A HOH 313 D HOH 23 1_555 A HOH 314 D HOH 23 1_555 A HOH 316 D HOH 23 1_555 A HOH 365 D HOH 23 1_555 A HOH 383 D HOH 23 1_555 19 P 21 21 21