0.0338 0.0000 0.0100 0.0000 0.0165 0.0000 0.0000 0.0000 0.0237 0.0000 0.0000 0.0000 Gavira, J.A. DiGiamamarino, E. Tempel, W. Liu, Z.J. Wang, B.C. Meehan, E. Ng, J.D. Southeast Collaboratory for Structural Genomics (SECSG) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 2 90.00 106.45 90.00 29.604 60.457 43.980 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C4 H10 O2 90.121 (R,R)-2,3-BUTANEDIOL non-polymer Cl -1 35.453 CHLORIDE ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Na 1 22.990 SODIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking UNKNOWN ATOM OR ION non-polymer C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N O N 75 R C N 76 N C N 77 R C N 78 N O N 79 N C N 80 N H N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N CL N 91 N N N 92 R C N 93 N C N 94 N O N 95 N C N 96 N S N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N N N 106 S C N 107 N C N 108 N O N 109 N C N 110 N C N 111 N C N 112 N O N 113 N N N 114 N O N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N N N 126 S C N 127 N C N 128 N O N 129 N C N 130 N C N 131 N C N 132 N O N 133 N O N 134 N O N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N N N 145 N C N 146 N C N 147 N O N 148 N O N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N N N 155 S C N 156 N C N 157 N O N 158 N C Y 159 N C Y 160 N N Y 161 N C Y 162 N C Y 163 N N N 164 N O N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N O N 176 N H N 177 N H N 178 N N N 179 S C N 180 N C N 181 N O N 182 S C N 183 N C N 184 N C N 185 N C N 186 N O N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N N N 201 S C N 202 N C N 203 N O N 204 N C N 205 N C N 206 N C N 207 N C N 208 N O N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N N N 223 S C N 224 N C N 225 N O N 226 N C N 227 N C N 228 N C N 229 N C N 230 N N N 231 N O N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N N N 248 S C N 249 N C N 250 N O N 251 N C N 252 N C N 253 N S N 254 N C N 255 N O N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N NA N 268 N N N 269 S C N 270 N C N 271 N O N 272 N C Y 273 N C Y 274 N C Y 275 N C Y 276 N C Y 277 N C Y 278 N C N 279 N O N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N N N 292 S C N 293 N C N 294 N O N 295 N C N 296 N C N 297 N C N 298 N O N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N N N 309 S C N 310 N C N 311 N O N 312 N C N 313 N O N 314 N O N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N N N 323 S C N 324 N C N 325 N O N 326 R C N 327 N O N 328 N C N 329 N O N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N N N 340 S C N 341 N C N 342 N O N 343 N C Y 344 N C Y 345 N C Y 346 N C Y 347 N N Y 348 N C Y 349 N C Y 350 N C Y 351 N C Y 352 N C N 353 N O N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N N N 367 S C N 368 N C N 369 N O N 370 N C Y 371 N C Y 372 N C Y 373 N C Y 374 N C Y 375 N C Y 376 N C N 377 N O N 378 N O N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N N N 391 S C N 392 N C N 393 N O N 394 N C N 395 N C N 396 N C N 397 N O N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N doub N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N doub N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N doub N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N doub N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N doub N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N doub N 151 N sing N 152 N sing N 153 N sing N 154 N sing Y 155 N sing Y 156 N doub Y 157 N doub N 158 N sing Y 159 N sing N 160 N sing Y 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N doub N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N doub N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N doub N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N doub N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N doub N 259 N sing N 260 N sing N 261 N sing N 262 N sing Y 263 N doub Y 264 N sing Y 265 N sing N 266 N sing Y 267 N doub N 268 N sing Y 269 N doub N 270 N sing Y 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N doub N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N doub N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N doub N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N doub N 328 N sing N 329 N sing N 330 N sing N 331 N sing Y 332 N doub Y 333 N sing Y 334 N sing N 335 N sing Y 336 N doub Y 337 N sing Y 338 N sing N 339 N sing Y 340 N sing Y 341 N doub N 342 N sing Y 343 N doub N 344 N sing Y 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N doub N 356 N sing N 357 N sing N 358 N sing N 359 N sing Y 360 N doub Y 361 N sing Y 362 N sing N 363 N sing Y 364 N doub N 365 N sing Y 366 N doub N 367 N sing Y 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N doub N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing To be published 0353 The 1.1A crystallographic structure of ubiquitin-conjugating enzyme (ubc-2) from Caenorhabditis elegans: functional and evolutionary significance 10.2210/pdb1z2u/pdb pdb_00001z2u 100 1 CCD 2002-11-17 MAR CCD 165 mm SINGLE WAVELENGTH M x-ray 1 0.97 1.0 22-ID APS 0.97 SYNCHROTRON APS BEAMLINE 22-ID 17005.438 Ubiquitin-conjugating enzyme E2 2 6.3.2.19 1 man polymer 35.453 CHLORIDE ION 6 syn non-polymer 22.990 SODIUM ION 1 syn non-polymer 90.121 (R,R)-2,3-BUTANEDIOL 2 syn non-polymer UNKNOWN ATOM OR ION 10 syn non-polymer 18.015 water 113 nat water Ubiquitin-protein ligase 2, Ubiquitin carrier protein 2 no no GSHMALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPN INSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYAM GSHMALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPN INSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYAM A M7.1 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Caenorhabditis Escherichia Escherichia coli sample ubc-2, let-70 6239 Caenorhabditis elegans 469008 Escherichia coli BL21(DE3) BL21(DE3) plasmid pET28 1 2.2 44.2 capillary counter-diffusion 5.0 7mg/mL protein in 2mM sodium citrate, 10% (v/v) ethanol, 1.5M Sodium Chloride, pH 5.0, capillary counter-diffusion, temperature 277.5K 277.5 Southeast Collaboratory for Structural Genomics SECSG PSI, Protein Structure Initiative software software chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn struct_ref_seq_dif struct_site repository Initial release Version format compliance Version format compliance Refinement description Data collection Refinement description Data collection Database references Derived calculations Refinement description 1 0 2005-03-22 1 1 2008-04-01 1 2 2011-07-13 1 3 2017-10-11 1 4 2019-07-24 1 5 2023-08-23 _software.classification _software.name _software.classification _software.contact_author _software.contact_author_email _software.date _software.language _software.location _software.name _software.type _software.version _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_symmetry _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y RCSB Y RCSB 2005-03-09 REL REL CL CHLORIDE ION NA SODIUM ION BU3 (R,R)-2,3-BUTANEDIOL UNX UNKNOWN ATOM OR ION HOH water 1QCQ pdb entry 1qcq PDB experimental model CL 601 2 CL CL 601 A CL 602 2 CL CL 602 A CL 603 2 CL CL 603 A CL 604 2 CL CL 604 A CL 605 2 CL CL 605 A CL 606 2 CL CL 606 A NA 701 3 NA NA 701 A BU3 201 4 BU3 BU3 201 A BU3 202 4 BU3 BU3 202 A UNX 501 5 UNX UNX 501 A UNX 502 5 UNX UNX 502 A UNX 503 5 UNX UNX 503 A UNX 504 5 UNX UNX 504 A UNX 505 5 UNX UNX 505 A UNX 506 5 UNX UNX 506 A UNX 507 5 UNX UNX 507 A UNX 508 5 UNX UNX 508 A UNX 509 5 UNX UNX 509 A UNX 510 5 UNX UNX 510 A HOH 301 6 HOH HOH 301 A HOH 302 6 HOH HOH 302 A HOH 303 6 HOH HOH 303 A HOH 304 6 HOH HOH 304 A HOH 305 6 HOH HOH 305 A HOH 306 6 HOH HOH 306 A HOH 307 6 HOH HOH 307 A HOH 308 6 HOH HOH 308 A HOH 309 6 HOH HOH 309 A HOH 310 6 HOH HOH 310 A HOH 311 6 HOH HOH 311 A HOH 312 6 HOH HOH 312 A HOH 313 6 HOH HOH 313 A HOH 314 6 HOH HOH 314 A HOH 315 6 HOH HOH 315 A HOH 316 6 HOH HOH 316 A HOH 317 6 HOH HOH 317 A HOH 318 6 HOH HOH 318 A HOH 319 6 HOH HOH 319 A HOH 320 6 HOH HOH 320 A HOH 321 6 HOH HOH 321 A HOH 322 6 HOH HOH 322 A HOH 323 6 HOH HOH 323 A HOH 324 6 HOH HOH 324 A HOH 325 6 HOH HOH 325 A HOH 326 6 HOH HOH 326 A HOH 327 6 HOH HOH 327 A HOH 328 6 HOH HOH 328 A HOH 329 6 HOH HOH 329 A HOH 330 6 HOH HOH 330 A HOH 331 6 HOH HOH 331 A HOH 332 6 HOH HOH 332 A HOH 333 6 HOH HOH 333 A HOH 334 6 HOH HOH 334 A HOH 335 6 HOH HOH 335 A HOH 336 6 HOH HOH 336 A HOH 337 6 HOH HOH 337 A HOH 338 6 HOH HOH 338 A HOH 339 6 HOH HOH 339 A HOH 340 6 HOH HOH 340 A HOH 341 6 HOH HOH 341 A HOH 342 6 HOH HOH 342 A HOH 343 6 HOH HOH 343 A HOH 344 6 HOH HOH 344 A HOH 345 6 HOH HOH 345 A HOH 346 6 HOH HOH 346 A HOH 347 6 HOH HOH 347 A HOH 348 6 HOH HOH 348 A HOH 349 6 HOH HOH 349 A HOH 350 6 HOH HOH 350 A HOH 351 6 HOH HOH 351 A HOH 352 6 HOH HOH 352 A HOH 353 6 HOH HOH 353 A HOH 354 6 HOH HOH 354 A HOH 355 6 HOH HOH 355 A HOH 356 6 HOH HOH 356 A HOH 357 6 HOH HOH 357 A HOH 358 6 HOH HOH 358 A HOH 359 6 HOH HOH 359 A HOH 360 6 HOH HOH 360 A HOH 361 6 HOH HOH 361 A HOH 362 6 HOH HOH 362 A HOH 363 6 HOH HOH 363 A HOH 364 6 HOH HOH 364 A HOH 365 6 HOH HOH 365 A HOH 366 6 HOH HOH 366 A HOH 367 6 HOH HOH 367 A HOH 368 6 HOH HOH 368 A HOH 369 6 HOH HOH 369 A HOH 370 6 HOH HOH 370 A HOH 371 6 HOH HOH 371 A HOH 372 6 HOH HOH 372 A HOH 373 6 HOH HOH 373 A HOH 374 6 HOH HOH 374 A HOH 375 6 HOH HOH 375 A HOH 376 6 HOH HOH 376 A HOH 377 6 HOH HOH 377 A HOH 378 6 HOH HOH 378 A HOH 379 6 HOH HOH 379 A HOH 380 6 HOH HOH 380 A HOH 381 6 HOH HOH 381 A HOH 382 6 HOH HOH 382 A HOH 383 6 HOH HOH 383 A HOH 384 6 HOH HOH 384 A HOH 385 6 HOH HOH 385 A HOH 386 6 HOH HOH 386 A HOH 387 6 HOH HOH 387 A HOH 388 6 HOH HOH 388 A HOH 389 6 HOH HOH 389 A HOH 390 6 HOH HOH 390 A HOH 391 6 HOH HOH 391 A HOH 392 6 HOH HOH 392 A HOH 393 6 HOH HOH 393 A HOH 394 6 HOH HOH 394 A HOH 395 6 HOH HOH 395 A HOH 396 6 HOH HOH 396 A HOH 397 6 HOH HOH 397 A HOH 398 6 HOH HOH 398 A HOH 399 6 HOH HOH 399 A HOH 400 6 HOH HOH 400 A HOH 401 6 HOH HOH 401 A HOH 402 6 HOH HOH 402 A HOH 403 6 HOH HOH 403 A HOH 404 6 HOH HOH 404 A HOH 405 6 HOH HOH 405 A HOH 406 6 HOH HOH 406 A HOH 407 6 HOH HOH 407 A HOH 408 6 HOH HOH 408 A HOH 409 6 HOH HOH 409 A HOH 410 6 HOH HOH 410 A HOH 411 6 HOH HOH 411 A HOH 412 6 HOH HOH 412 A HOH 413 6 HOH HOH 413 A GLY -2 n 1 GLY -2 A SER -1 n 2 SER -1 A HIS 0 n 3 HIS 0 A MET 1 n 4 MET 1 A ALA 2 n 5 ALA 2 A LEU 3 n 6 LEU 3 A LYS 4 n 7 LYS 4 A ARG 5 n 8 ARG 5 A ILE 6 n 9 ILE 6 A GLN 7 n 10 GLN 7 A LYS 8 n 11 LYS 8 A GLU 9 n 12 GLU 9 A LEU 10 n 13 LEU 10 A GLN 11 n 14 GLN 11 A ASP 12 n 15 ASP 12 A LEU 13 n 16 LEU 13 A GLY 14 n 17 GLY 14 A ARG 15 n 18 ARG 15 A ASP 16 n 19 ASP 16 A PRO 17 n 20 PRO 17 A PRO 18 n 21 PRO 18 A ALA 19 n 22 ALA 19 A GLN 20 n 23 GLN 20 A CYS 21 n 24 CYS 21 A SER 22 n 25 SER 22 A ALA 23 n 26 ALA 23 A GLY 24 n 27 GLY 24 A PRO 25 n 28 PRO 25 A VAL 26 n 29 VAL 26 A GLY 27 n 30 GLY 27 A ASP 28 n 31 ASP 28 A ASP 29 n 32 ASP 29 A LEU 30 n 33 LEU 30 A PHE 31 n 34 PHE 31 A HIS 32 n 35 HIS 32 A TRP 33 n 36 TRP 33 A GLN 34 n 37 GLN 34 A ALA 35 n 38 ALA 35 A THR 36 n 39 THR 36 A ILE 37 n 40 ILE 37 A MET 38 n 41 MET 38 A GLY 39 n 42 GLY 39 A PRO 40 n 43 PRO 40 A PRO 41 n 44 PRO 41 A GLU 42 n 45 GLU 42 A SER 43 n 46 SER 43 A PRO 44 n 47 PRO 44 A TYR 45 n 48 TYR 45 A GLN 46 n 49 GLN 46 A GLY 47 n 50 GLY 47 A GLY 48 n 51 GLY 48 A VAL 49 n 52 VAL 49 A PHE 50 n 53 PHE 50 A PHE 51 n 54 PHE 51 A LEU 52 n 55 LEU 52 A THR 53 n 56 THR 53 A ILE 54 n 57 ILE 54 A HIS 55 n 58 HIS 55 A PHE 56 n 59 PHE 56 A PRO 57 n 60 PRO 57 A THR 58 n 61 THR 58 A ASP 59 n 62 ASP 59 A TYR 60 n 63 TYR 60 A PRO 61 n 64 PRO 61 A PHE 62 n 65 PHE 62 A LYS 63 n 66 LYS 63 A PRO 64 n 67 PRO 64 A PRO 65 n 68 PRO 65 A LYS 66 n 69 LYS 66 A VAL 67 n 70 VAL 67 A ALA 68 n 71 ALA 68 A PHE 69 n 72 PHE 69 A THR 70 n 73 THR 70 A THR 71 n 74 THR 71 A ARG 72 n 75 ARG 72 A ILE 73 n 76 ILE 73 A TYR 74 n 77 TYR 74 A HIS 75 n 78 HIS 75 A PRO 76 n 79 PRO 76 A ASN 77 n 80 ASN 77 A ILE 78 n 81 ILE 78 A ASN 79 n 82 ASN 79 A SER 80 n 83 SER 80 A ASN 81 n 84 ASN 81 A GLY 82 n 85 GLY 82 A SER 83 n 86 SER 83 A ILE 84 n 87 ILE 84 A CYS 85 n 88 CYS 85 A LEU 86 n 89 LEU 86 A ASP 87 n 90 ASP 87 A ILE 88 n 91 ILE 88 A LEU 89 n 92 LEU 89 A ARG 90 n 93 ARG 90 A SER 91 n 94 SER 91 A GLN 92 n 95 GLN 92 A TRP 93 n 96 TRP 93 A SER 94 n 97 SER 94 A PRO 95 n 98 PRO 95 A ALA 96 n 99 ALA 96 A LEU 97 n 100 LEU 97 A THR 98 n 101 THR 98 A ILE 99 n 102 ILE 99 A SER 100 n 103 SER 100 A LYS 101 n 104 LYS 101 A VAL 102 n 105 VAL 102 A LEU 103 n 106 LEU 103 A LEU 104 n 107 LEU 104 A SER 105 n 108 SER 105 A ILE 106 n 109 ILE 106 A CYS 107 n 110 CYS 107 A SER 108 n 111 SER 108 A LEU 109 n 112 LEU 109 A LEU 110 n 113 LEU 110 A CYS 111 n 114 CYS 111 A ASP 112 n 115 ASP 112 A PRO 113 n 116 PRO 113 A ASN 114 n 117 ASN 114 A PRO 115 n 118 PRO 115 A ASP 116 n 119 ASP 116 A ASP 117 n 120 ASP 117 A PRO 118 n 121 PRO 118 A LEU 119 n 122 LEU 119 A VAL 120 n 123 VAL 120 A PRO 121 n 124 PRO 121 A GLU 122 n 125 GLU 122 A ILE 123 n 126 ILE 123 A ALA 124 n 127 ALA 124 A ARG 125 n 128 ARG 125 A ILE 126 n 129 ILE 126 A TYR 127 n 130 TYR 127 A LYS 128 n 131 LYS 128 A THR 129 n 132 THR 129 A ASP 130 n 133 ASP 130 A ARG 131 n 134 ARG 131 A GLU 132 n 135 GLU 132 A ARG 133 n 136 ARG 133 A TYR 134 n 137 TYR 134 A ASN 135 n 138 ASN 135 A GLN 136 n 139 GLN 136 A LEU 137 n 140 LEU 137 A ALA 138 n 141 ALA 138 A ARG 139 n 142 ARG 139 A GLU 140 n 143 GLU 140 A TRP 141 n 144 TRP 141 A THR 142 n 145 THR 142 A GLN 143 n 146 GLN 143 A LYS 144 n 147 LYS 144 A TYR 145 n 148 TYR 145 A ALA 146 n 149 ALA 146 A MET 147 n 150 MET 147 A author_defined_assembly 1 monomeric A SER -1 A OG SER 2 1_556 A NA 701 H NA NA 1_555 A ASP 112 A OD1 ASP 115 1_555 80.2 A SER -1 A OG SER 2 1_556 A NA 701 H NA NA 1_555 A PRO 113 A O PRO 116 1_555 171.0 A ASP 112 A OD1 ASP 115 1_555 A NA 701 H NA NA 1_555 A PRO 113 A O PRO 116 1_555 90.8 A SER -1 A OG SER 2 1_556 A NA 701 H NA NA 1_555 A TYR 127 A OH TYR 130 1_555 88.8 A ASP 112 A OD1 ASP 115 1_555 A NA 701 H NA NA 1_555 A TYR 127 A OH TYR 130 1_555 95.4 A PRO 113 A O PRO 116 1_555 A NA 701 H NA NA 1_555 A TYR 127 A OH TYR 130 1_555 91.6 A SER -1 A OG SER 2 1_556 A NA 701 H NA NA 1_555 A BU3 201 I O6 BU3 1_455 87.1 A ASP 112 A OD1 ASP 115 1_555 A NA 701 H NA NA 1_555 A BU3 201 I O6 BU3 1_455 150.5 A PRO 113 A O PRO 116 1_555 A NA 701 H NA NA 1_555 A BU3 201 I O6 BU3 1_455 101.1 A TYR 127 A OH TYR 130 1_555 A NA 701 H NA NA 1_555 A BU3 201 I O6 BU3 1_455 111.0 A SER -1 A OG SER 2 1_556 A NA 701 H NA NA 1_555 A BU3 201 I O5 BU3 1_455 90.1 A ASP 112 A OD1 ASP 115 1_555 A NA 701 H NA NA 1_555 A BU3 201 I O5 BU3 1_455 85.1 A PRO 113 A O PRO 116 1_555 A NA 701 H NA NA 1_555 A BU3 201 I O5 BU3 1_455 89.6 A TYR 127 A OH TYR 130 1_555 A NA 701 H NA NA 1_555 A BU3 201 I O5 BU3 1_455 178.6 A BU3 201 I O6 BU3 1_455 A NA 701 H NA NA 1_555 A BU3 201 I O5 BU3 1_455 68.3 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N VAL 26 A N VAL 29 A O HIS 32 A O HIS 35 A N ILE 37 A N ILE 40 A O PHE 50 A O PHE 53 A N HIS 55 A N HIS 58 A O LYS 66 A O LYS 69 1 A CD GLN 7 A CD GLN 10 1 Y 1 A OE1 GLN 7 A OE1 GLN 10 1 Y 1 A NE2 GLN 7 A NE2 GLN 10 1 Y 1 A CD LYS 8 A CD LYS 11 1 Y 1 A CE LYS 8 A CE LYS 11 1 Y 1 A NZ LYS 8 A NZ LYS 11 1 Y 1 A CD GLN 11 A CD GLN 14 1 Y 1 A OE1 GLN 11 A OE1 GLN 14 1 Y 1 A NE2 GLN 11 A NE2 GLN 14 1 Y 1 A CD LYS 66 A CD LYS 69 1 Y 1 A CE LYS 66 A CE LYS 69 1 Y 1 A NZ LYS 66 A NZ LYS 69 1 Y 1 A CG ASP 87 A CG ASP 90 1 Y 1 A OD1 ASP 87 A OD1 ASP 90 1 Y 1 A OD2 ASP 87 A OD2 ASP 90 1 Y 1 A CG ARG 90 A CG ARG 93 1 Y 1 A CD ARG 90 A CD ARG 93 1 Y 1 A NE ARG 90 A NE ARG 93 1 Y 1 A CZ ARG 90 A CZ ARG 93 1 Y 1 A NH1 ARG 90 A NH1 ARG 93 1 Y 1 A NH2 ARG 90 A NH2 ARG 93 1 Y 1 A NZ LYS 101 A NZ LYS 104 1 Y 1 A ASP 16 -158.11 70.50 1 A ARG 90 -136.25 -108.25 7.614 0.264 0.000 -0.109 0.037 0.000 -0.362 0.971 0.966 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.1493 0.1305 0.132 1.1 30 5900 57952 10.181 96.162 0.148 0.128 0.600 0.014 0.028 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT 0.028 0.028 0.800 0.800 1.200 pdb entry 1qcq MASK BULK SOLVENT 1.1 30 113 1317 29 0 1175 0.014 0.022 1315 0.002 0.020 1236 1.335 1.978 1801 0.889 3.000 2891 14.377 5.000 149 28.045 22.982 57 12.506 15.000 228 13.566 15.000 10 0.086 0.200 214 0.007 0.020 1373 0.001 0.020 254 0.216 0.200 268 0.184 0.200 1229 0.188 0.200 640 0.086 0.200 764 0.111 0.200 60 0.111 0.200 2 0.386 0.200 14 0.221 0.200 64 0.047 0.200 11 0.024 0.200 1 1.724 2.000 782 0.873 2.000 294 2.548 3.000 1315 1.588 3.000 1097 2.292 2.000 554 1.041 2.000 1032 3.151 3.000 486 1.639 3.000 1794 6.899 3.000 130 2.914 3.000 2515 1.206 3.000 2662 0.157 0.132 1.128 411 3444 4442 20 86.785 0.133 0.109 1.159 398 3552 4289 20 92.096 0.134 0.102 1.192 445 3558 4251 20 94.166 0.119 0.096 1.229 381 3481 4084 20 94.564 0.127 0.099 1.269 400 3359 3943 20 95.334 0.129 0.098 1.314 375 3266 3801 20 95.791 0.127 0.103 1.363 356 3248 3746 20 96.209 0.135 0.104 1.419 354 3100 3570 20 96.751 0.125 0.104 1.482 323 3031 3430 20 97.784 0.139 0.109 1.554 313 2870 3249 20 97.969 0.13 0.109 1.638 309 2751 3120 20 98.077 0.128 0.12 1.738 285 2632 2951 20 98.848 0.14 0.124 1.857 275 2473 2776 20 98.991 0.153 0.137 2.006 265 2278 2563 20 99.220 0.151 0.13 2.197 230 2139 2377 20 99.663 0.143 0.142 2.455 220 1941 2165 20 99.815 0.164 0.155 2.833 189 1719 1912 20 99.791 0.183 0.161 3.466 181 1431 1613 20 99.938 0.171 0.159 4.886 117 1152 1271 20 99.843 0.229 0.226 42.182 73 627 712 20 98.315 1.10 30.00 1Z2U 58674 0.055 0.907 1 5.50 97.4 0.143 1.10 1.14 5541 0.940 3.0 92.6 0.128 1.14 1.18 5725 0.923 3.7 95.3 0.113 1.18 1.24 5778 0.966 4.1 96.6 0.103 1.24 1.30 5808 0.957 4.3 96.8 0.087 1.30 1.39 5849 0.977 4.4 97.4 0.088 1.39 1.49 5917 0.983 4.9 98.2 0.088 1.49 1.64 5936 0.956 7.5 98.6 0.065 1.64 1.88 5962 0.947 7.6 99.2 0.051 1.88 2.37 6032 0.881 7.6 99.7 0.046 2.37 30.00 6126 0.695 7.4 99.8 refinement Murshudov, G.N. ccp4@dl.ac.uk 24/04/2001 Fortran http://www.ccp4.ac.uk/main.html REFMAC program refmac_5.2.0005 refinement Axel T. Brunger axel.brunger@yale.edu Fortran_77 http://cns.csb.yale.edu/v1.1/ CNS package data scaling Zbyszek Otwinowski zbyszek@mix.swmed.edu http://www.lnls.br/infra/linhasluz/denzo-hkl.htm SCALEPACK package data collection MAR345 phasing CNS The 1.1A crystallographic structure of ubiquitin-conjugating enzyme (ubc-2) from Caenorhabditis elegans: functional and evolutionary significance 1 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 3 N N 4 N N 4 N N 5 N N 5 N N 5 N N 5 N N 5 N N 5 N N 5 N N 5 N N 5 N N 5 N N 6 N N A HIS 0 A HIS 3 HELX_P A ASP 16 A ASP 19 1 1 17 A LEU 86 A LEU 89 HELX_P A ARG 90 A ARG 93 5 2 5 A THR 98 A THR 101 HELX_P A ASP 112 A ASP 115 1 3 15 A VAL 120 A VAL 123 HELX_P A ASP 130 A ASP 133 1 4 11 A ASP 130 A ASP 133 HELX_P A ALA 146 A ALA 149 1 5 17 metalc 2.530 A SER -1 A OG SER 2 1_556 A NA 701 H NA NA 1_555 metalc 2.311 A ASP 112 A OD1 ASP 115 1_555 A NA 701 H NA NA 1_555 metalc 2.289 A PRO 113 A O PRO 116 1_555 A NA 701 H NA NA 1_555 metalc 2.471 A TYR 127 A OH TYR 130 1_555 A NA 701 H NA NA 1_555 metalc 2.386 A BU3 201 I O6 BU3 1_455 A NA 701 H NA NA 1_555 metalc 2.430 A BU3 201 I O5 BU3 1_455 A NA 701 H NA NA 1_555 LIGASE PSI, SECSG, ubiquitin-conjugating enzyme, Caenorhabditis elegans, proteosome pathway, Structural Genomics, Protein Structure Initiative, Southeast Collaboratory for Structural Genomics, LIGASE A TYR 60 A TYR 63 1 A PRO 61 A PRO 64 7.07 UBC2_CAEEL UNP 1 1 P35129 MALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYAM 1 147 1Z2U 1 147 P35129 A 1 4 150 1 cloning artifact GLY -2 1Z2U A P35129 UNP 1 1 cloning artifact SER -1 1Z2U A P35129 UNP 2 1 cloning artifact HIS 0 1Z2U A P35129 UNP 3 4 anti-parallel anti-parallel anti-parallel A CYS 21 A CYS 24 A VAL 26 A VAL 29 A ASP 29 A ASP 32 A MET 38 A MET 41 A VAL 49 A VAL 52 A HIS 55 A HIS 58 A LYS 66 A LYS 69 A PHE 69 A PHE 72 BINDING SITE FOR RESIDUE CL A 601 A CL 601 Software 4 BINDING SITE FOR RESIDUE CL A 602 A CL 602 Software 4 BINDING SITE FOR RESIDUE CL A 603 A CL 603 Software 5 BINDING SITE FOR RESIDUE CL A 604 A CL 604 Software 1 BINDING SITE FOR RESIDUE CL A 605 A CL 605 Software 4 BINDING SITE FOR RESIDUE CL A 606 A CL 606 Software 3 BINDING SITE FOR RESIDUE NA A 701 A NA 701 Software 5 BINDING SITE FOR RESIDUE BU3 A 201 A BU3 201 Software 9 BINDING SITE FOR RESIDUE BU3 A 202 A BU3 202 Software 3 BINDING SITE FOR RESIDUE UNX A 501 A UNX 501 Software 5 BINDING SITE FOR RESIDUE UNX A 502 A UNX 502 Software 1 BINDING SITE FOR RESIDUE UNX A 503 A UNX 503 Software 1 BINDING SITE FOR RESIDUE UNX A 504 A UNX 504 Software 2 BINDING SITE FOR RESIDUE UNX A 505 A UNX 505 Software 3 BINDING SITE FOR RESIDUE UNX A 506 A UNX 506 Software 6 BINDING SITE FOR RESIDUE UNX A 507 A UNX 507 Software 3 BINDING SITE FOR RESIDUE UNX A 508 A UNX 508 Software 5 BINDING SITE FOR RESIDUE UNX A 509 A UNX 509 Software 4 BINDING SITE FOR RESIDUE UNX A 510 A UNX 510 Software 2 A THR 58 A THR 61 4 1_555 A ASP 59 A ASP 62 4 1_555 A LYS 63 A LYS 66 4 1_555 A UNX 502 L UNX 4 1_555 A SER -1 A SER 2 4 1_656 A ARG 131 A ARG 134 4 1_655 A LYS 144 A LYS 147 4 1_555 A HOH 318 U HOH 4 1_656 A HIS 0 A HIS 3 5 1_556 A LEU 3 A LEU 6 5 1_556 A ARG 131 A ARG 134 5 1_555 A HOH 315 U HOH 5 1_556 A HOH 356 U HOH 5 1_555 A ARG 15 A ARG 18 1 1_555 A GLY -2 A GLY 1 4 1_555 A HIS 0 A HIS 3 4 1_555 A LYS 4 A LYS 7 4 1_555 A MET 147 A MET 150 4 1_454 A BU3 201 I BU3 3 1_555 A HOH 317 U HOH 3 1_655 A HOH 334 U HOH 3 1_555 A SER -1 A SER 2 5 1_556 A ASP 112 A ASP 115 5 1_555 A PRO 113 A PRO 116 5 1_555 A TYR 127 A TYR 130 5 1_555 A BU3 201 I BU3 5 1_455 A SER -1 A SER 2 9 1_656 A ASP 112 A ASP 115 9 1_655 A PRO 113 A PRO 116 9 1_655 A PRO 115 A PRO 118 9 1_655 A ASP 116 A ASP 119 9 1_655 A HOH 319 U HOH 9 1_655 A HOH 353 U HOH 9 1_655 A CL 606 G CL 9 1_555 A NA 701 H NA 9 1_655 A ARG 15 A ARG 18 3 1_555 A HOH 383 U HOH 3 1_555 A HOH 404 U HOH 3 1_555 A ASP 28 A ASP 31 5 1_556 A ASP 29 A ASP 32 5 1_556 A LEU 30 A LEU 33 5 1_556 A PHE 31 A PHE 34 5 1_556 A ARG 139 A ARG 142 5 1_555 A CL 601 B CL 1 1_555 A ASP 130 A ASP 133 1 1_555 A SER 22 A SER 25 2 1_555 A THR 36 A THR 39 2 1_555 A LEU 86 A LEU 89 3 1_555 A ASN 114 A ASN 117 3 1_555 A HOH 364 U HOH 3 1_555 A VAL 26 A VAL 29 6 1_555 A ASP 29 A ASP 32 6 1_555 A SER 94 A SER 97 6 1_655 A ARG 139 A ARG 142 6 1_554 A UNX 508 R UNX 6 1_555 A UNX 509 S UNX 6 1_555 A GLN 34 A GLN 37 3 1_555 A ALA 35 A ALA 38 3 1_555 A THR 36 A THR 39 3 1_555 A GLY 27 A GLY 30 5 1_555 A ASP 28 A ASP 31 5 1_555 A ALA 96 A ALA 99 5 1_655 A ARG 139 A ARG 142 5 1_554 A UNX 506 P UNX 5 1_555 A HIS 32 A HIS 35 4 1_555 A SER 94 A SER 97 4 1_655 A UNX 506 P UNX 4 1_555 A UNX 510 T UNX 4 1_555 A GLN 136 A GLN 139 2 1_554 A UNX 509 S UNX 2 1_555 4 P 1 21 1