1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Bertini, I.
Calderone, V.
Cosenza, M.
Fragai, M.
Lee, Y.M.
Luchinat, C.
Mangani, S.
Terni, B.
Turano, P.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Ca 2
40.078
CALCIUM ION
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C13 H20 N2 O5 S
316.373
N-ISOBUTYL-N-[4-METHOXYPHENYLSULFONYL]GLYCYL HYDROXAMIC ACID
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
US
Proc.Natl.Acad.Sci.Usa
PNASA6
0040
0027-8424
102
5334
5339
10.1073/pnas.0407106102
15809432
Conformational variability of matrix metalloproteinases: Beyond a single 3D structure.
2005
10.2210/pdb1z3j/pdb
pdb_00001z3j
Chirality errors at CA center of VAL 108 A
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
17615.670
Macrophage metalloelastase
3.4.24.65
residues 106-263
F171D
1
man
polymer
65.409
ZINC ION
2
syn
non-polymer
40.078
CALCIUM ION
3
syn
non-polymer
316.373
N-ISOBUTYL-N-[4-METHOXYPHENYLSULFONYL]GLYCYL HYDROXAMIC ACID
1
syn
non-polymer
HME, Matrix metalloproteinase-12, MMP-12, Macrophage elastase, ME
no
no
MGPVWRKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDDHAFDGKGGILAHA
FGPGSGIGGDAHFDEDEFWTTHSGGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG
MGPVWRKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDDHAFDGKGGILAHA
FGPGSGIGGDAHFDEDEFWTTHSGGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
sample
9606
Homo sapiens
562
Escherichia coli
plasmid
pET21 (Novagen)
database_2
pdbx_nmr_software
pdbx_nmr_spectrometer
pdbx_struct_assembly
pdbx_struct_conn_angle
pdbx_struct_oper_list
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2005-04-19
1
1
2008-04-30
1
2
2011-07-13
1
3
2021-10-20
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_pdbx_nmr_spectrometer.model
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
same structure, 20 models ensemble
N
RCSB
Y
RCSB
2005-03-13
REL
ZN
ZINC ION
CA
CALCIUM ION
NGH
N-ISOBUTYL-N-[4-METHOXYPHENYLSULFONYL]GLYCYL HYDROXAMIC ACID
This structure was determined using distance, dihedral angle and H-bond restraints with dipolar coupling restraints
minimized average structure
200
1
3D_13C-separated_NOESY
3D_15N-separated_NOESY
2D NOESY
HNHA
Isotope-Filtered 2D NOESY
0.3 M NaCl
7.2
ambient
298
K
distance geometry, simulated annealing, torsion angle dynamics, residue dipolar coupling
1
minimized average structure
0.9 mM MMP12 U-15N,13C; 10mM deuterated Tris; 5 mM CaCl2; 0.1 mM ZnCl2; 0.3 M NaCl; 90% H2O, 10% D2O
90% H2O/10% D2O
BRUNGER
collection
XwinNMR
3.1
BRUNGER
processing
XwinNMR
3.1
Guntert
data analysis
XEASY
1.3
Guntert
structure solution
DYANA
1.5
refinement
Amber
6.0
900
Bruker
AVANCE
800
Bruker
AVANCE
700
Bruker
AVANCE
500
Bruker
DRX
ZN
264
2
ZN
ZN
264
A
ZN
265
2
ZN
ZN
265
A
CA
266
3
CA
CA
266
A
CA
267
3
CA
CA
267
A
CA
268
3
CA
CA
268
A
NGH
269
4
NGH
NGH
269
A
MET
105
n
1
MET
105
A
GLY
106
n
2
GLY
106
A
PRO
107
n
3
PRO
107
A
VAL
108
n
4
VAL
108
A
TRP
109
n
5
TRP
109
A
ARG
110
n
6
ARG
110
A
LYS
111
n
7
LYS
111
A
HIS
112
n
8
HIS
112
A
TYR
113
n
9
TYR
113
A
ILE
114
n
10
ILE
114
A
THR
115
n
11
THR
115
A
TYR
116
n
12
TYR
116
A
ARG
117
n
13
ARG
117
A
ILE
118
n
14
ILE
118
A
ASN
119
n
15
ASN
119
A
ASN
120
n
16
ASN
120
A
TYR
121
n
17
TYR
121
A
THR
122
n
18
THR
122
A
PRO
123
n
19
PRO
123
A
ASP
124
n
20
ASP
124
A
MET
125
n
21
MET
125
A
ASN
126
n
22
ASN
126
A
ARG
127
n
23
ARG
127
A
GLU
128
n
24
GLU
128
A
ASP
129
n
25
ASP
129
A
VAL
130
n
26
VAL
130
A
ASP
131
n
27
ASP
131
A
TYR
132
n
28
TYR
132
A
ALA
133
n
29
ALA
133
A
ILE
134
n
30
ILE
134
A
ARG
135
n
31
ARG
135
A
LYS
136
n
32
LYS
136
A
ALA
137
n
33
ALA
137
A
PHE
138
n
34
PHE
138
A
GLN
139
n
35
GLN
139
A
VAL
140
n
36
VAL
140
A
TRP
141
n
37
TRP
141
A
SER
142
n
38
SER
142
A
ASN
143
n
39
ASN
143
A
VAL
144
n
40
VAL
144
A
THR
145
n
41
THR
145
A
PRO
146
n
42
PRO
146
A
LEU
147
n
43
LEU
147
A
LYS
148
n
44
LYS
148
A
PHE
149
n
45
PHE
149
A
SER
150
n
46
SER
150
A
LYS
151
n
47
LYS
151
A
ILE
152
n
48
ILE
152
A
ASN
153
n
49
ASN
153
A
THR
154
n
50
THR
154
A
GLY
155
n
51
GLY
155
A
MET
156
n
52
MET
156
A
ALA
157
n
53
ALA
157
A
ASP
158
n
54
ASP
158
A
ILE
159
n
55
ILE
159
A
LEU
160
n
56
LEU
160
A
VAL
161
n
57
VAL
161
A
VAL
162
n
58
VAL
162
A
PHE
163
n
59
PHE
163
A
ALA
164
n
60
ALA
164
A
ARG
165
n
61
ARG
165
A
GLY
166
n
62
GLY
166
A
ALA
167
n
63
ALA
167
A
HIS
168
n
64
HIS
168
A
GLY
169
n
65
GLY
169
A
ASP
170
n
66
ASP
170
A
ASP
171
n
67
ASP
171
A
HIS
172
n
68
HIS
172
A
ALA
173
n
69
ALA
173
A
PHE
174
n
70
PHE
174
A
ASP
175
n
71
ASP
175
A
GLY
176
n
72
GLY
176
A
LYS
177
n
73
LYS
177
A
GLY
178
n
74
GLY
178
A
GLY
179
n
75
GLY
179
A
ILE
180
n
76
ILE
180
A
LEU
181
n
77
LEU
181
A
ALA
182
n
78
ALA
182
A
HIS
183
n
79
HIS
183
A
ALA
184
n
80
ALA
184
A
PHE
185
n
81
PHE
185
A
GLY
186
n
82
GLY
186
A
PRO
187
n
83
PRO
187
A
GLY
188
n
84
GLY
188
A
SER
189
n
85
SER
189
A
GLY
190
n
86
GLY
190
A
ILE
191
n
87
ILE
191
A
GLY
192
n
88
GLY
192
A
GLY
193
n
89
GLY
193
A
ASP
194
n
90
ASP
194
A
ALA
195
n
91
ALA
195
A
HIS
196
n
92
HIS
196
A
PHE
197
n
93
PHE
197
A
ASP
198
n
94
ASP
198
A
GLU
199
n
95
GLU
199
A
ASP
200
n
96
ASP
200
A
GLU
201
n
97
GLU
201
A
PHE
202
n
98
PHE
202
A
TRP
203
n
99
TRP
203
A
THR
204
n
100
THR
204
A
THR
205
n
101
THR
205
A
HIS
206
n
102
HIS
206
A
SER
207
n
103
SER
207
A
GLY
208
n
104
GLY
208
A
GLY
209
n
105
GLY
209
A
THR
210
n
106
THR
210
A
ASN
211
n
107
ASN
211
A
LEU
212
n
108
LEU
212
A
PHE
213
n
109
PHE
213
A
LEU
214
n
110
LEU
214
A
THR
215
n
111
THR
215
A
ALA
216
n
112
ALA
216
A
VAL
217
n
113
VAL
217
A
HIS
218
n
114
HIS
218
A
GLU
219
n
115
GLU
219
A
ILE
220
n
116
ILE
220
A
GLY
221
n
117
GLY
221
A
HIS
222
n
118
HIS
222
A
SER
223
n
119
SER
223
A
LEU
224
n
120
LEU
224
A
GLY
225
n
121
GLY
225
A
LEU
226
n
122
LEU
226
A
GLY
227
n
123
GLY
227
A
HIS
228
n
124
HIS
228
A
SER
229
n
125
SER
229
A
SER
230
n
126
SER
230
A
ASP
231
n
127
ASP
231
A
PRO
232
n
128
PRO
232
A
LYS
233
n
129
LYS
233
A
ALA
234
n
130
ALA
234
A
VAL
235
n
131
VAL
235
A
MET
236
n
132
MET
236
A
PHE
237
n
133
PHE
237
A
PRO
238
n
134
PRO
238
A
THR
239
n
135
THR
239
A
TYR
240
n
136
TYR
240
A
LYS
241
n
137
LYS
241
A
TYR
242
n
138
TYR
242
A
VAL
243
n
139
VAL
243
A
ASP
244
n
140
ASP
244
A
ILE
245
n
141
ILE
245
A
ASN
246
n
142
ASN
246
A
THR
247
n
143
THR
247
A
PHE
248
n
144
PHE
248
A
ARG
249
n
145
ARG
249
A
LEU
250
n
146
LEU
250
A
SER
251
n
147
SER
251
A
ALA
252
n
148
ALA
252
A
ASP
253
n
149
ASP
253
A
ASP
254
n
150
ASP
254
A
ILE
255
n
151
ILE
255
A
ARG
256
n
152
ARG
256
A
GLY
257
n
153
GLY
257
A
ILE
258
n
154
ILE
258
A
GLN
259
n
155
GLN
259
A
SER
260
n
156
SER
260
A
LEU
261
n
157
LEU
261
A
TYR
262
n
158
TYR
262
A
GLY
263
n
159
GLY
263
A
author_defined_assembly
1
monomeric
A
ASP
124
A
OD2
ASP
20
1_555
A
CA
266
D
CA
CA
1_555
A
ASP
124
A
OD1
ASP
20
1_555
52.4
A
ASP
124
A
OD2
ASP
20
1_555
A
CA
266
D
CA
CA
1_555
A
GLU
199
A
OE2
GLU
95
1_555
130.7
A
ASP
124
A
OD1
ASP
20
1_555
A
CA
266
D
CA
CA
1_555
A
GLU
199
A
OE2
GLU
95
1_555
78.6
A
ASP
124
A
OD2
ASP
20
1_555
A
CA
266
D
CA
CA
1_555
A
GLU
199
A
O
GLU
95
1_555
147.2
A
ASP
124
A
OD1
ASP
20
1_555
A
CA
266
D
CA
CA
1_555
A
GLU
199
A
O
GLU
95
1_555
137.1
A
GLU
199
A
OE2
GLU
95
1_555
A
CA
266
D
CA
CA
1_555
A
GLU
199
A
O
GLU
95
1_555
72.8
A
ASP
124
A
OD2
ASP
20
1_555
A
CA
266
D
CA
CA
1_555
A
GLU
201
A
O
GLU
97
1_555
81.2
A
ASP
124
A
OD1
ASP
20
1_555
A
CA
266
D
CA
CA
1_555
A
GLU
201
A
O
GLU
97
1_555
118.0
A
GLU
199
A
OE2
GLU
95
1_555
A
CA
266
D
CA
CA
1_555
A
GLU
201
A
O
GLU
97
1_555
134.4
A
GLU
199
A
O
GLU
95
1_555
A
CA
266
D
CA
CA
1_555
A
GLU
201
A
O
GLU
97
1_555
67.2
A
HIS
168
A
NE2
HIS
64
1_555
A
ZN
265
C
ZN
ZN
1_555
A
ASP
170
A
OD1
ASP
66
1_555
84.1
A
HIS
168
A
NE2
HIS
64
1_555
A
ZN
265
C
ZN
ZN
1_555
A
ASP
170
A
OD2
ASP
66
1_555
143.6
A
ASP
170
A
OD1
ASP
66
1_555
A
ZN
265
C
ZN
ZN
1_555
A
ASP
170
A
OD2
ASP
66
1_555
59.5
A
HIS
168
A
NE2
HIS
64
1_555
A
ZN
265
C
ZN
ZN
1_555
A
HIS
183
A
NE2
HIS
79
1_555
107.2
A
ASP
170
A
OD1
ASP
66
1_555
A
ZN
265
C
ZN
ZN
1_555
A
HIS
183
A
NE2
HIS
79
1_555
114.8
A
ASP
170
A
OD2
ASP
66
1_555
A
ZN
265
C
ZN
ZN
1_555
A
HIS
183
A
NE2
HIS
79
1_555
89.6
A
HIS
168
A
NE2
HIS
64
1_555
A
ZN
265
C
ZN
ZN
1_555
A
HIS
196
A
ND1
HIS
92
1_555
95.3
A
ASP
170
A
OD1
ASP
66
1_555
A
ZN
265
C
ZN
ZN
1_555
A
HIS
196
A
ND1
HIS
92
1_555
158.7
A
ASP
170
A
OD2
ASP
66
1_555
A
ZN
265
C
ZN
ZN
1_555
A
HIS
196
A
ND1
HIS
92
1_555
118.5
A
HIS
183
A
NE2
HIS
79
1_555
A
ZN
265
C
ZN
ZN
1_555
A
HIS
196
A
ND1
HIS
92
1_555
85.8
A
ASP
175
A
OD2
ASP
71
1_555
A
CA
267
E
CA
CA
1_555
A
ASP
175
A
OD1
ASP
71
1_555
26.1
A
ASP
175
A
OD2
ASP
71
1_555
A
CA
267
E
CA
CA
1_555
A
GLY
176
A
O
GLY
72
1_555
101.8
A
ASP
175
A
OD1
ASP
71
1_555
A
CA
267
E
CA
CA
1_555
A
GLY
176
A
O
GLY
72
1_555
78.3
A
ASP
175
A
OD2
ASP
71
1_555
A
CA
267
E
CA
CA
1_555
A
GLY
178
A
O
GLY
74
1_555
63.3
A
ASP
175
A
OD1
ASP
71
1_555
A
CA
267
E
CA
CA
1_555
A
GLY
178
A
O
GLY
74
1_555
74.6
A
GLY
176
A
O
GLY
72
1_555
A
CA
267
E
CA
CA
1_555
A
GLY
178
A
O
GLY
74
1_555
90.6
A
ASP
175
A
OD2
ASP
71
1_555
A
CA
267
E
CA
CA
1_555
A
ILE
180
A
O
ILE
76
1_555
70.8
A
ASP
175
A
OD1
ASP
71
1_555
A
CA
267
E
CA
CA
1_555
A
ILE
180
A
O
ILE
76
1_555
96.3
A
GLY
176
A
O
GLY
72
1_555
A
CA
267
E
CA
CA
1_555
A
ILE
180
A
O
ILE
76
1_555
165.5
A
GLY
178
A
O
GLY
74
1_555
A
CA
267
E
CA
CA
1_555
A
ILE
180
A
O
ILE
76
1_555
74.9
A
ASP
175
A
OD2
ASP
71
1_555
A
CA
267
E
CA
CA
1_555
A
ASP
198
A
OD1
ASP
94
1_555
94.5
A
ASP
175
A
OD1
ASP
71
1_555
A
CA
267
E
CA
CA
1_555
A
ASP
198
A
OD1
ASP
94
1_555
96.4
A
GLY
176
A
O
GLY
72
1_555
A
CA
267
E
CA
CA
1_555
A
ASP
198
A
OD1
ASP
94
1_555
119.5
A
GLY
178
A
O
GLY
74
1_555
A
CA
267
E
CA
CA
1_555
A
ASP
198
A
OD1
ASP
94
1_555
146.6
A
ILE
180
A
O
ILE
76
1_555
A
CA
267
E
CA
CA
1_555
A
ASP
198
A
OD1
ASP
94
1_555
74.2
A
ASP
175
A
OD2
ASP
71
1_555
A
CA
267
E
CA
CA
1_555
A
ASP
198
A
OD2
ASP
94
1_555
138.2
A
ASP
175
A
OD1
ASP
71
1_555
A
CA
267
E
CA
CA
1_555
A
ASP
198
A
OD2
ASP
94
1_555
121.6
A
GLY
176
A
O
GLY
72
1_555
A
CA
267
E
CA
CA
1_555
A
ASP
198
A
OD2
ASP
94
1_555
78.7
A
GLY
178
A
O
GLY
74
1_555
A
CA
267
E
CA
CA
1_555
A
ASP
198
A
OD2
ASP
94
1_555
157.4
A
ILE
180
A
O
ILE
76
1_555
A
CA
267
E
CA
CA
1_555
A
ASP
198
A
OD2
ASP
94
1_555
115.3
A
ASP
198
A
OD1
ASP
94
1_555
A
CA
267
E
CA
CA
1_555
A
ASP
198
A
OD2
ASP
94
1_555
53.1
A
ASP
175
A
OD2
ASP
71
1_555
A
CA
267
E
CA
CA
1_555
A
GLU
201
A
OE2
GLU
97
1_555
142.7
A
ASP
175
A
OD1
ASP
71
1_555
A
CA
267
E
CA
CA
1_555
A
GLU
201
A
OE2
GLU
97
1_555
143.2
A
GLY
176
A
O
GLY
72
1_555
A
CA
267
E
CA
CA
1_555
A
GLU
201
A
OE2
GLU
97
1_555
76.4
A
GLY
178
A
O
GLY
74
1_555
A
CA
267
E
CA
CA
1_555
A
GLU
201
A
OE2
GLU
97
1_555
79.4
A
ILE
180
A
O
ILE
76
1_555
A
CA
267
E
CA
CA
1_555
A
GLU
201
A
OE2
GLU
97
1_555
101.7
A
ASP
198
A
OD1
ASP
94
1_555
A
CA
267
E
CA
CA
1_555
A
GLU
201
A
OE2
GLU
97
1_555
119.2
A
ASP
198
A
OD2
ASP
94
1_555
A
CA
267
E
CA
CA
1_555
A
GLU
201
A
OE2
GLU
97
1_555
78.7
A
GLY
190
A
O
GLY
86
1_555
A
CA
268
F
CA
CA
1_555
A
ILE
191
A
O
ILE
87
1_555
69.8
A
GLY
190
A
O
GLY
86
1_555
A
CA
268
F
CA
CA
1_555
A
GLY
192
A
O
GLY
88
1_555
80.3
A
ILE
191
A
O
ILE
87
1_555
A
CA
268
F
CA
CA
1_555
A
GLY
192
A
O
GLY
88
1_555
58.0
A
GLY
190
A
O
GLY
86
1_555
A
CA
268
F
CA
CA
1_555
A
ASP
194
A
OD2
ASP
90
1_555
84.6
A
ILE
191
A
O
ILE
87
1_555
A
CA
268
F
CA
CA
1_555
A
ASP
194
A
OD2
ASP
90
1_555
58.7
A
GLY
192
A
O
GLY
88
1_555
A
CA
268
F
CA
CA
1_555
A
ASP
194
A
OD2
ASP
90
1_555
116.3
A
GLY
190
A
O
GLY
86
1_555
A
CA
268
F
CA
CA
1_555
A
ASP
194
A
OD1
ASP
90
1_555
134.4
A
ILE
191
A
O
ILE
87
1_555
A
CA
268
F
CA
CA
1_555
A
ASP
194
A
OD1
ASP
90
1_555
77.2
A
GLY
192
A
O
GLY
88
1_555
A
CA
268
F
CA
CA
1_555
A
ASP
194
A
OD1
ASP
90
1_555
107.8
A
ASP
194
A
OD2
ASP
90
1_555
A
CA
268
F
CA
CA
1_555
A
ASP
194
A
OD1
ASP
90
1_555
51.0
A
HIS
218
A
NE2
HIS
114
1_555
A
ZN
264
B
ZN
ZN
1_555
A
HIS
222
A
NE2
HIS
118
1_555
79.8
A
HIS
218
A
NE2
HIS
114
1_555
A
ZN
264
B
ZN
ZN
1_555
A
HIS
228
A
NE2
HIS
124
1_555
109.1
A
HIS
222
A
NE2
HIS
118
1_555
A
ZN
264
B
ZN
ZN
1_555
A
HIS
228
A
NE2
HIS
124
1_555
80.1
A
HIS
218
A
NE2
HIS
114
1_555
A
ZN
264
B
ZN
ZN
1_555
A
NGH
269
G
O4
NGH
1_555
77.4
A
HIS
222
A
NE2
HIS
118
1_555
A
ZN
264
B
ZN
ZN
1_555
A
NGH
269
G
O4
NGH
1_555
97.0
A
HIS
228
A
NE2
HIS
124
1_555
A
ZN
264
B
ZN
ZN
1_555
A
NGH
269
G
O4
NGH
1_555
172.0
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
SER
150
A
O
SER
46
A
N
ILE
114
A
N
ILE
10
A
N
ARG
117
A
N
ARG
13
A
O
VAL
161
A
O
VAL
57
A
N
VAL
162
A
N
VAL
58
A
O
PHE
197
A
O
PHE
93
A
O
HIS
196
A
O
HIS
92
A
N
HIS
183
A
N
HIS
79
A
N
THR
204
A
N
THR
100
A
O
THR
210
A
O
THR
106
1
A
CA
VAL
108
WRONG HAND
1
A
A
TRP
ARG
109
110
116.90
1
A
A
TYR
GLY
262
263
-38.93
1
A
ARG
110
0.081
SIDE CHAIN
1
A
TYR
116
0.089
SIDE CHAIN
1
A
ARG
127
0.093
SIDE CHAIN
1
A
PHE
149
0.240
SIDE CHAIN
1
A
PHE
163
0.113
SIDE CHAIN
1
A
ASP
194
0.070
SIDE CHAIN
1
A
HIS
196
0.120
SIDE CHAIN
1
A
HIS
218
0.098
SIDE CHAIN
1
A
PHE
248
0.127
SIDE CHAIN
1
A
TYR
262
0.167
SIDE CHAIN
1
-15.78
1.90
111.40
95.62
A
A
A
CB
CA
C
VAL
VAL
VAL
108
108
108
N
1
11.46
1.90
110.20
121.66
A
A
A
CB
CA
C
LEU
LEU
LEU
181
181
181
N
1
A
VAL
108
136.21
36.67
1
A
ARG
110
11.27
-77.04
1
A
LYS
111
-137.03
-69.91
1
A
HIS
112
63.85
-66.54
1
A
ALA
164
-123.30
-168.63
1
A
ALA
173
64.04
-67.00
1
A
ASP
175
-174.64
20.97
1
A
HIS
228
7.84
113.75
1
A
PHE
248
40.64
85.02
minimized average
Solution Structure of MMP12 in the presence of N-isobutyl-N-4-methoxyphenylsulfonyl]glycyl hydroxamic acid (NNGH)
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
3
N
N
4
N
N
A
ASN
126
A
ASN
22
HELX_P
A
THR
145
A
THR
41
1
1
20
A
LEU
212
A
LEU
108
HELX_P
A
GLY
225
A
GLY
121
1
2
14
A
SER
251
A
SER
147
HELX_P
A
SER
260
A
SER
156
1
3
10
metalc
2.266
A
ASP
124
A
OD2
ASP
20
1_555
A
CA
266
D
CA
CA
1_555
metalc
2.530
A
ASP
124
A
OD1
ASP
20
1_555
A
CA
266
D
CA
CA
1_555
metalc
2.324
A
HIS
168
A
NE2
HIS
64
1_555
A
ZN
265
C
ZN
ZN
1_555
metalc
2.062
A
ASP
170
A
OD1
ASP
66
1_555
A
ZN
265
C
ZN
ZN
1_555
metalc
2.198
A
ASP
170
A
OD2
ASP
66
1_555
A
ZN
265
C
ZN
ZN
1_555
metalc
3.987
A
ASP
175
A
OD2
ASP
71
1_555
A
CA
267
E
CA
CA
1_555
metalc
2.232
A
ASP
175
A
OD1
ASP
71
1_555
A
CA
267
E
CA
CA
1_555
metalc
2.383
A
GLY
176
A
O
GLY
72
1_555
A
CA
267
E
CA
CA
1_555
metalc
2.375
A
GLY
178
A
O
GLY
74
1_555
A
CA
267
E
CA
CA
1_555
metalc
2.347
A
ILE
180
A
O
ILE
76
1_555
A
CA
267
E
CA
CA
1_555
metalc
2.212
A
HIS
183
A
NE2
HIS
79
1_555
A
ZN
265
C
ZN
ZN
1_555
metalc
2.619
A
GLY
190
A
O
GLY
86
1_555
A
CA
268
F
CA
CA
1_555
metalc
2.990
A
ILE
191
A
O
ILE
87
1_555
A
CA
268
F
CA
CA
1_555
metalc
2.399
A
GLY
192
A
O
GLY
88
1_555
A
CA
268
F
CA
CA
1_555
metalc
2.594
A
ASP
194
A
OD2
ASP
90
1_555
A
CA
268
F
CA
CA
1_555
metalc
2.262
A
ASP
194
A
OD1
ASP
90
1_555
A
CA
268
F
CA
CA
1_555
metalc
2.261
A
HIS
196
A
ND1
HIS
92
1_555
A
ZN
265
C
ZN
ZN
1_555
metalc
2.311
A
ASP
198
A
OD1
ASP
94
1_555
A
CA
267
E
CA
CA
1_555
metalc
2.417
A
ASP
198
A
OD2
ASP
94
1_555
A
CA
267
E
CA
CA
1_555
metalc
2.261
A
GLU
199
A
OE2
GLU
95
1_555
A
CA
266
D
CA
CA
1_555
metalc
2.256
A
GLU
199
A
O
GLU
95
1_555
A
CA
266
D
CA
CA
1_555
metalc
2.487
A
GLU
201
A
O
GLU
97
1_555
A
CA
266
D
CA
CA
1_555
metalc
2.241
A
GLU
201
A
OE2
GLU
97
1_555
A
CA
267
E
CA
CA
1_555
metalc
2.077
A
HIS
218
A
NE2
HIS
114
1_555
A
ZN
264
B
ZN
ZN
1_555
metalc
2.080
A
HIS
222
A
NE2
HIS
118
1_555
A
ZN
264
B
ZN
ZN
1_555
metalc
2.132
A
HIS
228
A
NE2
HIS
124
1_555
A
ZN
264
B
ZN
ZN
1_555
metalc
2.114
A
ZN
264
B
ZN
ZN
1_555
A
NGH
269
G
O4
NGH
1_555
HYDROLASE
macrophage metalloelastase, MMP-12, solution structure, NNGH, zinc, HYDROLASE
A
MET
105
A
MET
1
1
A
GLY
106
A
GLY
2
5.82
A
PRO
107
A
PRO
3
1
A
VAL
108
A
VAL
4
-5.88
MMP12_HUMAN
UNP
1
106
P39900
GPVWRKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDFHAFDGKGGILAHAF
GPGSGIGGDAHFDEDEFWTTHSGGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG
106
263
1Z3J
106
263
P39900
A
1
2
159
1
initiating methionine
MET
105
1Z3J
A
P39900
UNP
1
1
PHE
engineered mutation
ASP
171
1Z3J
A
P39900
UNP
171
67
5
2
parallel
parallel
parallel
anti-parallel
parallel
A
LYS
148
A
LYS
44
A
LYS
151
A
LYS
47
A
TYR
113
A
TYR
9
A
ILE
118
A
ILE
14
A
ILE
159
A
ILE
55
A
PHE
163
A
PHE
59
A
ALA
195
A
ALA
91
A
PHE
197
A
PHE
93
A
ALA
182
A
ALA
78
A
ALA
184
A
ALA
80
A
TRP
203
A
TRP
99
A
THR
204
A
THR
100
A
THR
210
A
THR
106
A
ASN
211
A
ASN
107
BINDING SITE FOR RESIDUE ZN A 264
A
ZN
264
Software
4
BINDING SITE FOR RESIDUE ZN A 265
A
ZN
265
Software
4
BINDING SITE FOR RESIDUE CA A 266
A
CA
266
Software
4
BINDING SITE FOR RESIDUE CA A 267
A
CA
267
Software
6
BINDING SITE FOR RESIDUE CA A 268
A
CA
268
Software
4
BINDING SITE FOR RESIDUE NGH A 269
A
NGH
269
Software
13
A
HIS
218
A
HIS
114
4
1_555
A
HIS
222
A
HIS
118
4
1_555
A
HIS
228
A
HIS
124
4
1_555
A
NGH
269
G
NGH
4
1_555
A
HIS
168
A
HIS
64
4
1_555
A
ASP
170
A
ASP
66
4
1_555
A
HIS
183
A
HIS
79
4
1_555
A
HIS
196
A
HIS
92
4
1_555
A
THR
122
A
THR
18
4
1_555
A
ASP
124
A
ASP
20
4
1_555
A
GLU
199
A
GLU
95
4
1_555
A
GLU
201
A
GLU
97
4
1_555
A
ASP
175
A
ASP
71
6
1_555
A
GLY
176
A
GLY
72
6
1_555
A
GLY
178
A
GLY
74
6
1_555
A
ILE
180
A
ILE
76
6
1_555
A
ASP
198
A
ASP
94
6
1_555
A
GLU
201
A
GLU
97
6
1_555
A
GLY
190
A
GLY
86
4
1_555
A
ILE
191
A
ILE
87
4
1_555
A
GLY
192
A
GLY
88
4
1_555
A
ASP
194
A
ASP
90
4
1_555
A
GLY
179
A
GLY
75
13
1_555
A
ILE
180
A
ILE
76
13
1_555
A
LEU
181
A
LEU
77
13
1_555
A
ALA
182
A
ALA
78
13
1_555
A
LEU
214
A
LEU
110
13
1_555
A
THR
215
A
THR
111
13
1_555
A
HIS
218
A
HIS
114
13
1_555
A
GLU
219
A
GLU
115
13
1_555
A
HIS
222
A
HIS
118
13
1_555
A
PRO
238
A
PRO
134
13
1_555
A
THR
239
A
THR
135
13
1_555
A
TYR
240
A
TYR
136
13
1_555
A
ZN
264
B
ZN
13
1_555
1
P 1