1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Syvitski, R.T.
Burton, I.
Mattatall, N.R.
Douglas, S.E.
Jakeman, D.L.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
H2 N
16.023
AMINO GROUP
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Biochemistry
BICHAW
0033
0006-2960
44
7282
7293
10.1021/bi0504005
15882067
Structural characterization of the antimicrobial peptide pleurocidin from winter flounder.
2005
10.2210/pdb1z64/pdb
pdb_00001z64
2716.191
Pleruocidin
residues 23-47
1
man
polymer
no
yes
GWGSFFKKAAHVGKHVGKAALTHYL(NH2)
GWGSFFKKAAHVGKHVGKAALTHYLX
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
winter flounder
Pseudopleuronectes
Escherichia
sample
8265
Pseudopleuronectes americanus
562
Escherichia coli
plasmid
database_2
pdbx_nmr_software
pdbx_nmr_spectrometer
pdbx_struct_assembly
pdbx_struct_oper_list
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2005-04-12
1
1
2008-04-30
1
2
2011-07-13
1
3
2022-03-02
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_pdbx_nmr_spectrometer.model
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
N
RCSB
Y
RCSB
2005-03-21
REL
Structure was determined using 2D and 3D hetronuclear techniques
structures with the least restraint violations
50
11
2D NOESY
2D TOCSY
3D_15N-separated_NOESY
DOSY
0mM NaCl
7.0
atmospheric
atm
293
K
distance geometry; simulated annealing; molecular dynamics
1
closest to the average
2mM peptide U-15; 50mM phosphate buffer
90/10 H2O/D2O, 140mM DPC
Bruker
processing
XwinNMR
2.6
Donald Kneller
data analysis
Sparky
3.105
Brunger
structure solution
X-PLOR
3.1
Brunger
refinement
X-PLOR
3.1
500
Bruker
AVANCE
GLY
1
n
1
GLY
1
A
TRP
2
n
2
TRP
2
A
GLY
3
n
3
GLY
3
A
SER
4
n
4
SER
4
A
PHE
5
n
5
PHE
5
A
PHE
6
n
6
PHE
6
A
LYS
7
n
7
LYS
7
A
LYS
8
n
8
LYS
8
A
ALA
9
n
9
ALA
9
A
ALA
10
n
10
ALA
10
A
HIS
11
n
11
HIS
11
A
VAL
12
n
12
VAL
12
A
GLY
13
n
13
GLY
13
A
LYS
14
n
14
LYS
14
A
HIS
15
n
15
HIS
15
A
VAL
16
n
16
VAL
16
A
GLY
17
n
17
GLY
17
A
LYS
18
n
18
LYS
18
A
ALA
19
n
19
ALA
19
A
ALA
20
n
20
ALA
20
A
LEU
21
n
21
LEU
21
A
THR
22
n
22
THR
22
A
HIS
23
n
23
HIS
23
A
TYR
24
n
24
TYR
24
A
LEU
25
n
25
LEU
25
A
NH2
26
n
26
NH2
26
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
A
O
H
LYS
HIS
7
11
1.49
1
A
A
O
H
ALA
GLY
9
13
1.53
2
A
A
O
H
ALA
HIS
19
23
1.47
2
A
A
O
H
GLY
LEU
17
21
1.58
3
A
A
O
H
GLY
LEU
17
21
1.60
4
A
A
O
H
GLY
LEU
17
21
1.58
5
A
A
O
H
LYS
HIS
7
11
1.50
5
A
A
O
H
ALA
GLY
9
13
1.57
6
A
A
O
H
LYS
HIS
7
11
1.49
8
A
A
O
H
LYS
HIS
7
11
1.49
8
A
A
O
H
ALA
GLY
9
13
1.54
8
A
A
O
H
VAL
ALA
16
20
1.57
9
A
A
O
H
LYS
HIS
7
11
1.50
9
A
A
O
H
ALA
GLY
9
13
1.55
10
A
A
O
H
LYS
HIS
7
11
1.48
10
A
A
O
H
ALA
GLY
9
13
1.54
1
A
SER
4
-47.78
-86.62
1
A
PHE
6
-43.75
-75.07
1
A
HIS
23
-125.95
-59.47
2
A
TRP
2
-151.65
-48.62
2
A
SER
4
-47.42
-79.51
2
A
ALA
19
-79.14
-70.61
3
A
TRP
2
56.93
17.46
3
A
SER
4
-40.54
-81.30
3
A
HIS
23
172.63
29.28
3
A
TYR
24
57.76
18.57
4
A
SER
4
-43.05
-90.26
4
A
LYS
18
-72.49
-72.16
4
A
HIS
23
176.39
23.18
4
A
TYR
24
57.05
19.08
5
A
SER
4
-45.45
-86.21
5
A
PHE
6
-44.01
-75.43
5
A
HIS
23
-127.53
-62.12
6
A
TRP
2
-101.83
-62.71
6
A
SER
4
-47.38
-86.15
6
A
PHE
6
-43.40
-74.92
6
A
LEU
21
-120.11
-54.34
7
A
SER
4
-47.29
-76.03
7
A
LYS
18
-74.14
-72.50
7
A
HIS
23
176.42
23.43
7
A
TYR
24
55.46
19.53
8
A
SER
4
-45.74
-85.28
8
A
PHE
6
-43.22
-74.93
9
A
SER
4
-50.42
-86.70
9
A
PHE
6
-43.43
-74.48
9
A
HIS
23
-136.39
-44.56
10
A
TRP
2
-172.83
31.10
10
A
SER
4
-43.71
-85.89
10
A
PHE
6
-42.30
-73.06
10
A
HIS
23
-138.52
-47.17
11
A
SER
4
-53.14
-90.39
11
A
PHE
5
-47.93
-16.94
11
A
ALA
19
-79.92
-72.87
NMR Solution Structure of Pleurocidin in DPC Micelles
1
N
N
A
TRP
2
A
TRP
2
HELX_P
A
LEU
21
A
LEU
21
1
1
20
covale
1.305
both
A
LEU
25
A
C
LEU
25
1_555
A
NH2
26
A
N
NH2
26
1_555
ANTIMICROBIAL PROTEIN
helix; micelle, Antimicrobial protein
PLE1_PSEAM
UNP
1
23
P81941
GWGSFFKKAAHVGKHVGKAALTHYL
23
47
1Z64
1
25
P81941
A
1
1
25
1
amidation
NH2
26
1Z64
A
P81941
UNP
26
BINDING SITE FOR RESIDUE NH2 A 26
A
NH2
26
Software
1
A
LEU
25
A
LEU
25
1
1_555