1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Syvitski, R.T. Burton, I. Mattatall, N.R. Douglas, S.E. Jakeman, D.L. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking H2 N 16.023 AMINO GROUP non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Biochemistry BICHAW 0033 0006-2960 44 7282 7293 10.1021/bi0504005 15882067 Structural characterization of the antimicrobial peptide pleurocidin from winter flounder. 2005 10.2210/pdb1z64/pdb pdb_00001z64 2716.191 Pleruocidin residues 23-47 1 man polymer no yes GWGSFFKKAAHVGKHVGKAALTHYL(NH2) GWGSFFKKAAHVGKHVGKAALTHYLX A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n winter flounder Pseudopleuronectes Escherichia sample 8265 Pseudopleuronectes americanus 562 Escherichia coli plasmid database_2 pdbx_nmr_software pdbx_nmr_spectrometer pdbx_struct_assembly pdbx_struct_oper_list struct_conn struct_ref_seq_dif struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2005-04-12 1 1 2008-04-30 1 2 2011-07-13 1 3 2022-03-02 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _pdbx_nmr_spectrometer.model _struct_conn.pdbx_leaving_atom_flag _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id N RCSB Y RCSB 2005-03-21 REL Structure was determined using 2D and 3D hetronuclear techniques structures with the least restraint violations 50 11 2D NOESY 2D TOCSY 3D_15N-separated_NOESY DOSY 0mM NaCl 7.0 atmospheric atm 293 K distance geometry; simulated annealing; molecular dynamics 1 closest to the average 2mM peptide U-15; 50mM phosphate buffer 90/10 H2O/D2O, 140mM DPC Bruker processing XwinNMR 2.6 Donald Kneller data analysis Sparky 3.105 Brunger structure solution X-PLOR 3.1 Brunger refinement X-PLOR 3.1 500 Bruker AVANCE GLY 1 n 1 GLY 1 A TRP 2 n 2 TRP 2 A GLY 3 n 3 GLY 3 A SER 4 n 4 SER 4 A PHE 5 n 5 PHE 5 A PHE 6 n 6 PHE 6 A LYS 7 n 7 LYS 7 A LYS 8 n 8 LYS 8 A ALA 9 n 9 ALA 9 A ALA 10 n 10 ALA 10 A HIS 11 n 11 HIS 11 A VAL 12 n 12 VAL 12 A GLY 13 n 13 GLY 13 A LYS 14 n 14 LYS 14 A HIS 15 n 15 HIS 15 A VAL 16 n 16 VAL 16 A GLY 17 n 17 GLY 17 A LYS 18 n 18 LYS 18 A ALA 19 n 19 ALA 19 A ALA 20 n 20 ALA 20 A LEU 21 n 21 LEU 21 A THR 22 n 22 THR 22 A HIS 23 n 23 HIS 23 A TYR 24 n 24 TYR 24 A LEU 25 n 25 LEU 25 A NH2 26 n 26 NH2 26 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A A O H LYS HIS 7 11 1.49 1 A A O H ALA GLY 9 13 1.53 2 A A O H ALA HIS 19 23 1.47 2 A A O H GLY LEU 17 21 1.58 3 A A O H GLY LEU 17 21 1.60 4 A A O H GLY LEU 17 21 1.58 5 A A O H LYS HIS 7 11 1.50 5 A A O H ALA GLY 9 13 1.57 6 A A O H LYS HIS 7 11 1.49 8 A A O H LYS HIS 7 11 1.49 8 A A O H ALA GLY 9 13 1.54 8 A A O H VAL ALA 16 20 1.57 9 A A O H LYS HIS 7 11 1.50 9 A A O H ALA GLY 9 13 1.55 10 A A O H LYS HIS 7 11 1.48 10 A A O H ALA GLY 9 13 1.54 1 A SER 4 -47.78 -86.62 1 A PHE 6 -43.75 -75.07 1 A HIS 23 -125.95 -59.47 2 A TRP 2 -151.65 -48.62 2 A SER 4 -47.42 -79.51 2 A ALA 19 -79.14 -70.61 3 A TRP 2 56.93 17.46 3 A SER 4 -40.54 -81.30 3 A HIS 23 172.63 29.28 3 A TYR 24 57.76 18.57 4 A SER 4 -43.05 -90.26 4 A LYS 18 -72.49 -72.16 4 A HIS 23 176.39 23.18 4 A TYR 24 57.05 19.08 5 A SER 4 -45.45 -86.21 5 A PHE 6 -44.01 -75.43 5 A HIS 23 -127.53 -62.12 6 A TRP 2 -101.83 -62.71 6 A SER 4 -47.38 -86.15 6 A PHE 6 -43.40 -74.92 6 A LEU 21 -120.11 -54.34 7 A SER 4 -47.29 -76.03 7 A LYS 18 -74.14 -72.50 7 A HIS 23 176.42 23.43 7 A TYR 24 55.46 19.53 8 A SER 4 -45.74 -85.28 8 A PHE 6 -43.22 -74.93 9 A SER 4 -50.42 -86.70 9 A PHE 6 -43.43 -74.48 9 A HIS 23 -136.39 -44.56 10 A TRP 2 -172.83 31.10 10 A SER 4 -43.71 -85.89 10 A PHE 6 -42.30 -73.06 10 A HIS 23 -138.52 -47.17 11 A SER 4 -53.14 -90.39 11 A PHE 5 -47.93 -16.94 11 A ALA 19 -79.92 -72.87 NMR Solution Structure of Pleurocidin in DPC Micelles 1 N N A TRP 2 A TRP 2 HELX_P A LEU 21 A LEU 21 1 1 20 covale 1.305 both A LEU 25 A C LEU 25 1_555 A NH2 26 A N NH2 26 1_555 ANTIMICROBIAL PROTEIN helix; micelle, Antimicrobial protein PLE1_PSEAM UNP 1 23 P81941 GWGSFFKKAAHVGKHVGKAALTHYL 23 47 1Z64 1 25 P81941 A 1 1 25 1 amidation NH2 26 1Z64 A P81941 UNP 26 BINDING SITE FOR RESIDUE NH2 A 26 A NH2 26 Software 1 A LEU 25 A LEU 25 1 1_555