0.023358
0.000000
0.004392
0.000000
0.023867
0.000000
0.000000
0.000000
0.019034
0.00000
0.00000
0.00000
Tan, K.
Wang, J.
Lawler, J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
90
100.649
90
42.812
41.899
53.458
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
R
C
N
309
N
O
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
N
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
N
359
N
O
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
N
C
N
377
N
C
N
378
N
C
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
UK
Structure
STRUE6
2005
0969-2126
14
33
42
10.1016/j.str.2005.09.017
16407063
The structures of the thrombospondin-1 N-terminal domain and its complex with a synthetic pentameric heparin.
2006
10.2210/pdb1z78/pdb
pdb_00001z78
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2004-03-31
ADSC QUANTUM 4
SINGLE WAVELENGTH
M
x-ray
1
1.07218
1.0
19-ID
APS
1.07218
SYNCHROTRON
APS BEAMLINE 19-ID
23598.799
Thrombospondin 1
N-terminal domain
1
man
polymer
18.015
water
98
nat
water
no
no
NRIPESGGDNSVFDIFELTGAARKGSGRRLVKGPDPSSPAFRIEDANLIPPVPDDKFQDLVDAVRTEKGFLLLASLRQMK
KTRGTLLALERKDHSGQVFSVVSNGKAGTLDLSLTVQGKQHVVSVEEALLATGQWKSITLFVQEDRAQLYIDCEKMENAE
LDVPIQSVFTRDLASIARLRIAKGGVNDNFQGVLQNVRFVFGTTPEDILRNKGCS
NRIPESGGDNSVFDIFELTGAARKGSGRRLVKGPDPSSPAFRIEDANLIPPVPDDKFQDLVDAVRTEKGFLLLASLRQMK
KTRGTLLALERKDHSGQVFSVVSNGKAGTLDLSLTVQGKQHVVSVEEALLATGQWKSITLFVQEDRAQLYIDCEKMENAE
LDVPIQSVFTRDLASIARLRIAKGGVNDNFQGVLQNVRFVFGTTPEDILRNKGCS
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
fruit fly
Drosophila
sample
THBS1, TSP, TSP1
9606
Homo sapiens
7227
Drosophila melanogaster
Drosophila S2 Cells
plasmid
pMT/BiP/v5-HisA
1
1.9
35.1
VAPOR DIFFUSION, HANGING DROP
4.6
30% PEG1500 and 0.1 M NaAc, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Refinement description
1
0
2006-01-17
1
1
2008-04-30
1
2
2011-07-13
1
3
2024-04-03
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
RCSB
Y
RCSB
2005-03-24
REL
REL
HOH
water
1ZA4
NTSP-1 structure from NTSP-1/Arixtra complex to be deposited
PDB
experimental model
HOH
1
2
HOH
HOH
216
A
HOH
2
2
HOH
HOH
217
A
HOH
3
2
HOH
HOH
218
A
HOH
4
2
HOH
HOH
219
A
HOH
5
2
HOH
HOH
220
A
HOH
6
2
HOH
HOH
221
A
HOH
7
2
HOH
HOH
222
A
HOH
8
2
HOH
HOH
223
A
HOH
9
2
HOH
HOH
224
A
HOH
10
2
HOH
HOH
225
A
HOH
11
2
HOH
HOH
226
A
HOH
12
2
HOH
HOH
227
A
HOH
13
2
HOH
HOH
228
A
HOH
14
2
HOH
HOH
229
A
HOH
15
2
HOH
HOH
230
A
HOH
16
2
HOH
HOH
231
A
HOH
17
2
HOH
HOH
232
A
HOH
18
2
HOH
HOH
233
A
HOH
19
2
HOH
HOH
234
A
HOH
20
2
HOH
HOH
235
A
HOH
21
2
HOH
HOH
236
A
HOH
22
2
HOH
HOH
237
A
HOH
23
2
HOH
HOH
238
A
HOH
24
2
HOH
HOH
239
A
HOH
25
2
HOH
HOH
240
A
HOH
26
2
HOH
HOH
241
A
HOH
27
2
HOH
HOH
242
A
HOH
28
2
HOH
HOH
243
A
HOH
29
2
HOH
HOH
244
A
HOH
30
2
HOH
HOH
245
A
HOH
31
2
HOH
HOH
246
A
HOH
32
2
HOH
HOH
247
A
HOH
34
2
HOH
HOH
248
A
HOH
35
2
HOH
HOH
249
A
HOH
36
2
HOH
HOH
250
A
HOH
37
2
HOH
HOH
251
A
HOH
38
2
HOH
HOH
252
A
HOH
39
2
HOH
HOH
253
A
HOH
40
2
HOH
HOH
254
A
HOH
41
2
HOH
HOH
255
A
HOH
42
2
HOH
HOH
256
A
HOH
43
2
HOH
HOH
257
A
HOH
44
2
HOH
HOH
258
A
HOH
45
2
HOH
HOH
259
A
HOH
46
2
HOH
HOH
260
A
HOH
47
2
HOH
HOH
261
A
HOH
48
2
HOH
HOH
262
A
HOH
49
2
HOH
HOH
263
A
HOH
50
2
HOH
HOH
264
A
HOH
51
2
HOH
HOH
265
A
HOH
52
2
HOH
HOH
266
A
HOH
53
2
HOH
HOH
267
A
HOH
54
2
HOH
HOH
268
A
HOH
56
2
HOH
HOH
269
A
HOH
57
2
HOH
HOH
270
A
HOH
58
2
HOH
HOH
271
A
HOH
59
2
HOH
HOH
272
A
HOH
60
2
HOH
HOH
273
A
HOH
61
2
HOH
HOH
274
A
HOH
62
2
HOH
HOH
275
A
HOH
63
2
HOH
HOH
276
A
HOH
64
2
HOH
HOH
277
A
HOH
65
2
HOH
HOH
278
A
HOH
66
2
HOH
HOH
279
A
HOH
67
2
HOH
HOH
280
A
HOH
68
2
HOH
HOH
281
A
HOH
69
2
HOH
HOH
282
A
HOH
70
2
HOH
HOH
283
A
HOH
71
2
HOH
HOH
284
A
HOH
72
2
HOH
HOH
285
A
HOH
73
2
HOH
HOH
286
A
HOH
74
2
HOH
HOH
287
A
HOH
75
2
HOH
HOH
288
A
HOH
76
2
HOH
HOH
289
A
HOH
77
2
HOH
HOH
290
A
HOH
78
2
HOH
HOH
291
A
HOH
79
2
HOH
HOH
292
A
HOH
80
2
HOH
HOH
293
A
HOH
82
2
HOH
HOH
294
A
HOH
83
2
HOH
HOH
295
A
HOH
84
2
HOH
HOH
296
A
HOH
85
2
HOH
HOH
297
A
HOH
86
2
HOH
HOH
298
A
HOH
87
2
HOH
HOH
299
A
HOH
88
2
HOH
HOH
300
A
HOH
89
2
HOH
HOH
301
A
HOH
90
2
HOH
HOH
302
A
HOH
91
2
HOH
HOH
303
A
HOH
92
2
HOH
HOH
304
A
HOH
93
2
HOH
HOH
305
A
HOH
94
2
HOH
HOH
306
A
HOH
95
2
HOH
HOH
307
A
HOH
96
2
HOH
HOH
308
A
HOH
97
2
HOH
HOH
309
A
HOH
98
2
HOH
HOH
310
A
HOH
99
2
HOH
HOH
311
A
HOH
100
2
HOH
HOH
312
A
HOH
101
2
HOH
HOH
313
A
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
n
6
6
A
n
7
7
A
n
8
8
A
n
9
9
A
ASN
10
n
10
ASN
10
A
SER
11
n
11
SER
11
A
VAL
12
n
12
VAL
12
A
PHE
13
n
13
PHE
13
A
ASP
14
n
14
ASP
14
A
ILE
15
n
15
ILE
15
A
PHE
16
n
16
PHE
16
A
GLU
17
n
17
GLU
17
A
LEU
18
n
18
LEU
18
A
THR
19
n
19
THR
19
A
GLY
20
n
20
GLY
20
A
ALA
21
n
21
ALA
21
A
ALA
22
n
22
ALA
22
A
ARG
23
n
23
ARG
23
A
LYS
24
n
24
LYS
24
A
GLY
25
n
25
GLY
25
A
SER
26
n
26
SER
26
A
GLY
27
n
27
GLY
27
A
ARG
28
n
28
ARG
28
A
ARG
29
n
29
ARG
29
A
LEU
30
n
30
LEU
30
A
VAL
31
n
31
VAL
31
A
LYS
32
n
32
LYS
32
A
GLY
33
n
33
GLY
33
A
PRO
34
n
34
PRO
34
A
ASP
35
n
35
ASP
35
A
PRO
36
n
36
PRO
36
A
SER
37
n
37
SER
37
A
SER
38
n
38
SER
38
A
PRO
39
n
39
PRO
39
A
ALA
40
n
40
ALA
40
A
PHE
41
n
41
PHE
41
A
ARG
42
n
42
ARG
42
A
ILE
43
n
43
ILE
43
A
GLU
44
n
44
GLU
44
A
ASP
45
n
45
ASP
45
A
ALA
46
n
46
ALA
46
A
ASN
47
n
47
ASN
47
A
LEU
48
n
48
LEU
48
A
ILE
49
n
49
ILE
49
A
PRO
50
n
50
PRO
50
A
PRO
51
n
51
PRO
51
A
VAL
52
n
52
VAL
52
A
PRO
53
n
53
PRO
53
A
ASP
54
n
54
ASP
54
A
ASP
55
n
55
ASP
55
A
LYS
56
n
56
LYS
56
A
PHE
57
n
57
PHE
57
A
GLN
58
n
58
GLN
58
A
ASP
59
n
59
ASP
59
A
LEU
60
n
60
LEU
60
A
VAL
61
n
61
VAL
61
A
ASP
62
n
62
ASP
62
A
ALA
63
n
63
ALA
63
A
VAL
64
n
64
VAL
64
A
ARG
65
n
65
ARG
65
A
THR
66
n
66
THR
66
A
GLU
67
n
67
GLU
67
A
LYS
68
n
68
LYS
68
A
GLY
69
n
69
GLY
69
A
PHE
70
n
70
PHE
70
A
LEU
71
n
71
LEU
71
A
LEU
72
n
72
LEU
72
A
LEU
73
n
73
LEU
73
A
ALA
74
n
74
ALA
74
A
SER
75
n
75
SER
75
A
LEU
76
n
76
LEU
76
A
ARG
77
n
77
ARG
77
A
GLN
78
n
78
GLN
78
A
MET
79
n
79
MET
79
A
LYS
80
n
80
LYS
80
A
LYS
81
n
81
LYS
81
A
THR
82
n
82
THR
82
A
ARG
83
n
83
ARG
83
A
GLY
84
n
84
GLY
84
A
THR
85
n
85
THR
85
A
LEU
86
n
86
LEU
86
A
LEU
87
n
87
LEU
87
A
ALA
88
n
88
ALA
88
A
LEU
89
n
89
LEU
89
A
GLU
90
n
90
GLU
90
A
ARG
91
n
91
ARG
91
A
LYS
92
n
92
LYS
92
A
ASP
93
n
93
ASP
93
A
HIS
94
n
94
HIS
94
A
SER
95
n
95
SER
95
A
GLY
96
n
96
GLY
96
A
GLN
97
n
97
GLN
97
A
VAL
98
n
98
VAL
98
A
PHE
99
n
99
PHE
99
A
SER
100
n
100
SER
100
A
VAL
101
n
101
VAL
101
A
VAL
102
n
102
VAL
102
A
SER
103
n
103
SER
103
A
ASN
104
n
104
ASN
104
A
GLY
105
n
105
GLY
105
A
LYS
106
n
106
LYS
106
A
ALA
107
n
107
ALA
107
A
GLY
108
n
108
GLY
108
A
THR
109
n
109
THR
109
A
LEU
110
n
110
LEU
110
A
ASP
111
n
111
ASP
111
A
LEU
112
n
112
LEU
112
A
SER
113
n
113
SER
113
A
LEU
114
n
114
LEU
114
A
THR
115
n
115
THR
115
A
VAL
116
n
116
VAL
116
A
GLN
117
n
117
GLN
117
A
GLY
118
n
118
GLY
118
A
LYS
119
n
119
LYS
119
A
GLN
120
n
120
GLN
120
A
HIS
121
n
121
HIS
121
A
VAL
122
n
122
VAL
122
A
VAL
123
n
123
VAL
123
A
SER
124
n
124
SER
124
A
VAL
125
n
125
VAL
125
A
GLU
126
n
126
GLU
126
A
GLU
127
n
127
GLU
127
A
ALA
128
n
128
ALA
128
A
LEU
129
n
129
LEU
129
A
LEU
130
n
130
LEU
130
A
ALA
131
n
131
ALA
131
A
THR
132
n
132
THR
132
A
GLY
133
n
133
GLY
133
A
GLN
134
n
134
GLN
134
A
TRP
135
n
135
TRP
135
A
LYS
136
n
136
LYS
136
A
SER
137
n
137
SER
137
A
ILE
138
n
138
ILE
138
A
THR
139
n
139
THR
139
A
LEU
140
n
140
LEU
140
A
PHE
141
n
141
PHE
141
A
VAL
142
n
142
VAL
142
A
GLN
143
n
143
GLN
143
A
GLU
144
n
144
GLU
144
A
ASP
145
n
145
ASP
145
A
ARG
146
n
146
ARG
146
A
ALA
147
n
147
ALA
147
A
GLN
148
n
148
GLN
148
A
LEU
149
n
149
LEU
149
A
TYR
150
n
150
TYR
150
A
ILE
151
n
151
ILE
151
A
ASP
152
n
152
ASP
152
A
CYS
153
n
153
CYS
153
A
GLU
154
n
154
GLU
154
A
LYS
155
n
155
LYS
155
A
MET
156
n
156
MET
156
A
GLU
157
n
157
GLU
157
A
ASN
158
n
158
ASN
158
A
ALA
159
n
159
ALA
159
A
GLU
160
n
160
GLU
160
A
LEU
161
n
161
LEU
161
A
ASP
162
n
162
ASP
162
A
VAL
163
n
163
VAL
163
A
PRO
164
n
164
PRO
164
A
ILE
165
n
165
ILE
165
A
GLN
166
n
166
GLN
166
A
SER
167
n
167
SER
167
A
VAL
168
n
168
VAL
168
A
PHE
169
n
169
PHE
169
A
THR
170
n
170
THR
170
A
ARG
171
n
171
ARG
171
A
ASP
172
n
172
ASP
172
A
LEU
173
n
173
LEU
173
A
ALA
174
n
174
ALA
174
A
SER
175
n
175
SER
175
A
ILE
176
n
176
ILE
176
A
ALA
177
n
177
ALA
177
A
ARG
178
n
178
ARG
178
A
LEU
179
n
179
LEU
179
A
ARG
180
n
180
ARG
180
A
ILE
181
n
181
ILE
181
A
ALA
182
n
182
ALA
182
A
LYS
183
n
183
LYS
183
A
GLY
184
n
184
GLY
184
A
GLY
185
n
185
GLY
185
A
VAL
186
n
186
VAL
186
A
ASN
187
n
187
ASN
187
A
ASP
188
n
188
ASP
188
A
ASN
189
n
189
ASN
189
A
PHE
190
n
190
PHE
190
A
GLN
191
n
191
GLN
191
A
GLY
192
n
192
GLY
192
A
VAL
193
n
193
VAL
193
A
LEU
194
n
194
LEU
194
A
GLN
195
n
195
GLN
195
A
ASN
196
n
196
ASN
196
A
VAL
197
n
197
VAL
197
A
ARG
198
n
198
ARG
198
A
PHE
199
n
199
PHE
199
A
VAL
200
n
200
VAL
200
A
PHE
201
n
201
PHE
201
A
GLY
202
n
202
GLY
202
A
THR
203
n
203
THR
203
A
THR
204
n
204
THR
204
A
PRO
205
n
205
PRO
205
A
GLU
206
n
206
GLU
206
A
ASP
207
n
207
ASP
207
A
ILE
208
n
208
ILE
208
A
LEU
209
n
209
LEU
209
A
ARG
210
n
210
ARG
210
A
ASN
211
n
211
ASN
211
A
LYS
212
n
212
LYS
212
A
GLY
213
n
213
GLY
213
A
CYS
214
n
214
CYS
214
A
SER
215
n
215
SER
215
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
PHE
13
A
N
PHE
13
A
O
PHE
199
A
O
PHE
199
A
O
LEU
194
A
O
LEU
194
A
N
PHE
41
A
N
PHE
41
A
O
ARG
42
A
O
ARG
42
A
N
ARG
29
A
N
ARG
29
A
N
PHE
13
A
N
PHE
13
A
O
PHE
199
A
O
PHE
199
A
O
VAL
200
A
O
VAL
200
A
N
LEU
71
A
N
LEU
71
A
N
LEU
72
A
N
LEU
72
A
O
LEU
140
A
O
LEU
140
A
N
PHE
141
A
N
PHE
141
A
O
GLN
148
A
O
GLN
148
A
N
ALA
147
A
N
ALA
147
A
O
ALA
159
A
O
ALA
159
A
O
HIS
121
A
O
HIS
121
A
N
LEU
114
A
N
LEU
114
A
O
ASP
111
A
O
ASP
111
A
N
VAL
102
A
N
VAL
102
A
O
PHE
99
A
O
PHE
99
A
N
LEU
89
A
N
LEU
89
A
N
ALA
88
A
N
ALA
88
A
O
ARG
180
A
O
ARG
180
1
A
ASN
1
A
ASN
1
1
Y
1
A
ARG
2
A
ARG
2
1
Y
1
A
ILE
3
A
ILE
3
1
Y
1
A
PRO
4
A
PRO
4
1
Y
1
A
GLU
5
A
GLU
5
1
Y
1
A
SER
6
A
SER
6
1
Y
1
A
GLY
7
A
GLY
7
1
Y
1
A
GLY
8
A
GLY
8
1
Y
1
A
ASP
9
A
ASP
9
1
Y
1
A
ALA
21
-71.41
20.35
1
A
SER
26
-172.20
92.19
1
A
GLN
117
27.28
102.51
1
A
GLU
144
57.80
-121.89
1
A
ASP
152
69.74
-127.28
1
A
GLU
154
-133.70
-133.36
1
A
LYS
155
10.86
108.25
1
A
ASP
172
-116.59
54.94
1
A
VAL
186
-97.45
-116.21
26.91
0.259
0.236
0.253
0.237
1.8
30
1472
17415
14668
9.4
84.23
Random
1
3
MOLECULAR REPLACEMENT
NTSP-1 structure from NTSP-1/Arixtra complex to be deposited
Engh & Huber
0.341
0.313
3
0.315
0.282
1.8
30
101
1695
0
0
1594
0.0066
1.63
26.92
1.39
0.2834
0.2714
1.82
26
201
0.379
0.3646
1.84
37
495
0.2834
0.2521
1.87
19
172
22.74
1.8
50
1Z78
17415
0
0
0.068
1
32.12
6.9
99.6
0.427
1.80
1.86
2.75
1672
3.1
96.8
data collection
HKL-2000
data reduction
HKL-2000
phasing
AMoRE
refinement
CNS
1.1
data scaling
HKL-2000
Crystal Structure of the Thrombospondin-1 N-terminal domain
1
N
N
2
N
N
A
ILE
15
A
ILE
15
HELX_P
A
GLY
20
A
GLY
20
1
1
6
A
ASP
45
A
ASP
45
HELX_P
A
ILE
49
A
ILE
49
5
2
5
A
PRO
53
A
PRO
53
HELX_P
A
LYS
68
A
LYS
68
1
3
16
A
PRO
164
A
PRO
164
HELX_P
A
VAL
168
A
VAL
168
5
4
5
A
THR
204
A
THR
204
HELX_P
A
ARG
210
A
ARG
210
1
5
7
A
ASN
211
A
ASN
211
HELX_P
A
GLY
213
A
GLY
213
5
6
3
disulf
2.031
A
CYS
153
A
SG
CYS
153
1_555
A
CYS
214
A
SG
CYS
214
1_555
CELL ADHESION
TSP-1, NTSP-1, CELL ADHESION
TSP1_HUMAN
UNP
1
19
P07996
NRIPESGGDNSVFDIFELTGAARKGSGRRLVKGPDPSSPAFRIEDANLIPPVPDDKFQDLVDAVRTEKGFLLLASLRQMK
KTRGTLLALERKDHSGQVFSVVSNGKAGTLDLSLTVQGKQHVVSVEEALLATGQWKSITLFVQEDRAQLYIDCEKMENAE
LDVPIQSVFTRDLASIARLRIAKGGVNDNFQGVLQNVRFVFGTTPEDILRNKGCS
19
233
1Z78
1
215
P07996
A
1
1
215
4
6
5
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
VAL
12
A
VAL
12
A
ASP
14
A
ASP
14
A
GLY
192
A
GLY
192
A
VAL
200
A
VAL
200
A
ALA
40
A
ALA
40
A
ILE
43
A
ILE
43
A
ARG
28
A
ARG
28
A
VAL
31
A
VAL
31
A
VAL
12
A
VAL
12
A
ASP
14
A
ASP
14
A
GLY
192
A
GLY
192
A
VAL
200
A
VAL
200
A
GLY
69
A
GLY
69
A
GLN
78
A
GLN
78
A
LYS
136
A
LYS
136
A
GLN
143
A
GLN
143
A
ARG
146
A
ARG
146
A
ILE
151
A
ILE
151
A
MET
156
A
MET
156
A
GLU
160
A
GLU
160
A
LYS
119
A
LYS
119
A
VAL
125
A
VAL
125
A
THR
109
A
THR
109
A
VAL
116
A
VAL
116
A
GLN
97
A
GLN
97
A
ASN
104
A
ASN
104
A
ARG
83
A
ARG
83
A
ARG
91
A
ARG
91
A
ALA
177
A
ALA
177
A
ILE
181
A
ILE
181
4
P 1 21 1