data_1Z7I # _entry.id 1Z7I # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1Z7I pdb_00001z7i 10.2210/pdb1z7i/pdb NDB AD0045 ? ? RCSB RCSB032395 ? ? WWPDB D_1000032395 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-04-05 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 2 0 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.occupancy' 2 4 'Structure model' '_database_2.pdbx_DOI' 3 4 'Structure model' '_database_2.pdbx_database_accession' 4 4 'Structure model' '_struct_conn.pdbx_dist_value' 5 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 7 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 8 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 9 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 10 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 11 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 12 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 13 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 14 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 15 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 16 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1Z7I _pdbx_database_status.recvd_initial_deposition_date 2005-03-24 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1DNS . unspecified PDB 1D78 . unspecified PDB 1D79 . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Huang, Z.' 1 'Carrasco, N.' 2 'Jiang, J.' 3 # _citation.id primary _citation.title 'Selenium derivatization of nucleic acids for crystallography.' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 35 _citation.page_first 477 _citation.page_last 485 _citation.year 2007 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17169989 _citation.pdbx_database_id_DOI 10.1093/nar/gkl1070 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Jiang, J.' 1 ? primary 'Sheng, J.' 2 ? primary 'Carrasco, N.' 3 ? primary 'Huang, Z.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*GP*(UMS)P*GP*TP*AP*CP*AP*C)-3'" 2505.577 1 ? ? ;2'-Selenium A-DNA DUPLEX ; ? 2 non-polymer syn SPERMINE 202.340 1 ? ? ? ? 3 water nat water 18.015 44 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DG)(UMS)(DG)(DT)(DA)(DC)(DA)(DC)' _entity_poly.pdbx_seq_one_letter_code_can GUGTACAC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 SPERMINE SPM 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 UMS n 1 3 DG n 1 4 DT n 1 5 DA n 1 6 DC n 1 7 DA n 1 8 DC n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Solid Phase Synthesis via Phosphoramidite Chemistry' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 SPM non-polymer . SPERMINE ? 'C10 H26 N4' 202.340 UMS 'DNA linking' n "2'-METHYLSELENYL-2'-DEOXYURIDINE-5'-PHOSPHATE" ? 'C10 H15 N2 O8 P Se' 401.168 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG G A . n A 1 2 UMS 2 2 2 UMS UMS A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 DT 4 4 4 DT T A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 DC 6 6 6 DC C A . n A 1 7 DA 7 7 7 DA A A . n A 1 8 DC 8 8 8 DC C A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SPM 1 50 50 SPM SPM A . C 3 HOH 1 51 1 HOH HOH A . C 3 HOH 2 52 2 HOH HOH A . C 3 HOH 3 53 3 HOH HOH A . C 3 HOH 4 54 4 HOH HOH A . C 3 HOH 5 55 5 HOH HOH A . C 3 HOH 6 56 6 HOH HOH A . C 3 HOH 7 57 7 HOH HOH A . C 3 HOH 8 58 8 HOH HOH A . C 3 HOH 9 59 9 HOH HOH A . C 3 HOH 10 60 10 HOH HOH A . C 3 HOH 11 61 11 HOH HOH A . C 3 HOH 12 62 12 HOH HOH A . C 3 HOH 13 63 13 HOH HOH A . C 3 HOH 14 64 14 HOH HOH A . C 3 HOH 15 65 15 HOH HOH A . C 3 HOH 16 66 16 HOH HOH A . C 3 HOH 17 67 17 HOH HOH A . C 3 HOH 18 68 18 HOH HOH A . C 3 HOH 19 69 19 HOH HOH A . C 3 HOH 20 70 20 HOH HOH A . C 3 HOH 21 71 21 HOH HOH A . C 3 HOH 22 72 22 HOH HOH A . C 3 HOH 23 73 23 HOH HOH A . C 3 HOH 24 74 24 HOH HOH A . C 3 HOH 25 75 25 HOH HOH A . C 3 HOH 26 76 26 HOH HOH A . C 3 HOH 27 77 27 HOH HOH A . C 3 HOH 28 78 28 HOH HOH A . C 3 HOH 29 79 29 HOH HOH A . C 3 HOH 30 80 30 HOH HOH A . C 3 HOH 31 81 31 HOH HOH A . C 3 HOH 32 82 32 HOH HOH A . C 3 HOH 33 83 33 HOH HOH A . C 3 HOH 34 84 34 HOH HOH A . C 3 HOH 35 85 35 HOH HOH A . C 3 HOH 36 86 36 HOH HOH A . C 3 HOH 37 87 37 HOH HOH A . C 3 HOH 38 88 38 HOH HOH A . C 3 HOH 39 89 39 HOH HOH A . C 3 HOH 40 90 40 HOH HOH A . C 3 HOH 41 91 41 HOH HOH A . C 3 HOH 42 92 42 HOH HOH A . C 3 HOH 43 93 43 HOH HOH A . C 3 HOH 44 94 44 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 A SPM 50 ? N1 ? B SPM 1 N1 2 1 N 1 A SPM 50 ? C2 ? B SPM 1 C2 3 1 N 1 A SPM 50 ? C3 ? B SPM 1 C3 4 1 N 1 A SPM 50 ? C4 ? B SPM 1 C4 5 1 N 1 A SPM 50 ? C8 ? B SPM 1 C8 6 1 N 1 A SPM 50 ? C9 ? B SPM 1 C9 7 1 N 1 A SPM 50 ? N10 ? B SPM 1 N10 8 1 N 1 A SPM 50 ? C11 ? B SPM 1 C11 9 1 N 1 A SPM 50 ? C12 ? B SPM 1 C12 10 1 N 1 A SPM 50 ? C13 ? B SPM 1 C13 11 1 N 1 A SPM 50 ? N14 ? B SPM 1 N14 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 CBASS 'data collection' . ? 2 SCALEPACK 'data scaling' . ? 3 CNS phasing . ? 4 # _cell.entry_id 1Z7I _cell.length_a 42.076 _cell.length_b 42.076 _cell.length_c 23.935 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Z7I _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1Z7I _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.01 _exptl_crystal.density_percent_sol 59 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details ;10% v/v MPD, 40 mM Sodium Cacodylate (pH 6.0), 12 mM Spermine tetra-HCl, 80 mM Sodium Chloride, 20 mM Magnesium Chloride, VAPOR DIFFUSION, HANGING DROP, temperature 298K ; _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 MPD ? ? ? 1 2 1 'Sodium Cacodylate' ? ? ? 1 3 1 'Spermine tetra-HCl' ? ? ? 1 4 1 'Sodium Chloride' ? ? ? 1 5 1 'Magnesium Chloride' ? ? ? 1 6 1 H2O ? ? ? 1 7 2 MPD ? ? ? 1 8 2 'Sodium Cacodylate' ? ? ? 1 9 2 'Sodium Chloride' ? ? ? 1 10 2 'Magnesium Chloride' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 273 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'BRANDEIS - B4' _diffrn_detector.pdbx_collection_date 2004-02-13 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.979 1.0 2 0.9794 1.0 3 0.940 1.0 4 0.920 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X12C' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X12C _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.979, 0.9794, 0.940, 0.920' # _reflns.entry_id 1Z7I _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 50 _reflns.d_resolution_high 1.28 _reflns.number_obs 6029 _reflns.number_all 6325 _reflns.percent_possible_obs 95.3 _reflns.pdbx_Rmerge_I_obs 0.08 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 14.8 _reflns.B_iso_Wilson_estimate 14.9 _reflns.pdbx_redundancy 12.4 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.28 _reflns_shell.d_res_low 1.30 _reflns_shell.percent_possible_all 70 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1Z7I _refine.ls_number_reflns_obs 5275 _refine.ls_number_reflns_all 5901 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF 450767.65 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.81 _refine.ls_d_res_high 1.28 _refine.ls_percent_reflns_obs 89.3 _refine.ls_R_factor_obs 0.177 _refine.ls_R_factor_all 0.182 _refine.ls_R_factor_R_work 0.177 _refine.ls_R_factor_R_free 0.2 _refine.ls_R_factor_R_free_error 0.008 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 11.0 _refine.ls_number_reflns_R_free 581 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 15.0 _refine.aniso_B[1][1] 0.70 _refine.aniso_B[2][2] 0.70 _refine.aniso_B[3][3] -1.41 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.3 _refine.solvent_model_param_bsol 22.2222 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MAD, MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values dna-rna_ums.par _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1Z7I _refine_analyze.Luzzati_coordinate_error_obs 0.13 _refine_analyze.Luzzati_sigma_a_obs 0.11 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.15 _refine_analyze.Luzzati_sigma_a_free 0.10 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 162 _refine_hist.pdbx_number_atoms_ligand 3 _refine_hist.number_atoms_solvent 44 _refine_hist.number_atoms_total 209 _refine_hist.d_res_high 1.28 _refine_hist.d_res_low 20.81 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.012 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.8 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 33.1 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 2.07 ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.23 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 1.50 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 1.28 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 1.92 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.28 _refine_ls_shell.d_res_low 1.36 _refine_ls_shell.number_reflns_R_work 552 _refine_ls_shell.R_factor_R_work 0.237 _refine_ls_shell.percent_reflns_obs 66.6 _refine_ls_shell.R_factor_R_free 0.231 _refine_ls_shell.R_factor_R_free_error 0.026 _refine_ls_shell.percent_reflns_R_free 12.8 _refine_ls_shell.number_reflns_R_free 81 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 WATER_REP.PARAM DNA-RNA.TOP 'X-RAY DIFFRACTION' 3 ION.PARAM WATER.TOP 'X-RAY DIFFRACTION' 4 DNA-RNA_UMS.PAR ION.TOP 'X-RAY DIFFRACTION' 5 CAC.PAR UMS.TOP 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 1Z7I _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1Z7I _struct.title ;2'-Me-Se Derivitation of A-DNA Octamer G(UMSe)GTACAC ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1Z7I _struct_keywords.pdbx_keywords DNA _struct_keywords.text ;2'-Methylseleno-uridine, Se-DNA, Selenium Derivatization, DNA ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1Z7I _struct_ref.pdbx_db_accession 1Z7I _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1Z7I _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 8 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1Z7I _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 8 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 8 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_555 y,x,-z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DG 1 "O3'" ? ? ? 1_555 A UMS 2 P ? ? A DG 1 A UMS 2 1_555 ? ? ? ? ? ? ? 1.587 ? ? covale2 covale both ? A UMS 2 "O3'" ? ? ? 1_555 A DG 3 P ? ? A UMS 2 A DG 3 1_555 ? ? ? ? ? ? ? 1.583 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DC 8 N3 ? ? A DG 1 A DC 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DC 8 O2 ? ? A DG 1 A DC 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DC 8 N4 ? ? A DG 1 A DC 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A UMS 2 N3 ? ? ? 1_555 A DA 7 N1 ? ? A UMS 2 A DA 7 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A UMS 2 O4 ? ? ? 1_555 A DA 7 N6 ? ? A UMS 2 A DA 7 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DC 6 N3 ? ? A DG 3 A DC 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DC 6 O2 ? ? A DG 3 A DC 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DC 6 N4 ? ? A DG 3 A DC 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DT 4 N3 ? ? ? 1_555 A DA 5 N1 ? ? A DT 4 A DA 5 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DT 4 O4 ? ? ? 1_555 A DA 5 N6 ? ? A DT 4 A DA 5 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 5 N1 ? ? ? 1_555 A DT 4 N3 ? ? A DA 5 A DT 4 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 5 N6 ? ? ? 1_555 A DT 4 O4 ? ? A DA 5 A DT 4 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 6 N3 ? ? ? 1_555 A DG 3 N1 ? ? A DC 6 A DG 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 6 N4 ? ? ? 1_555 A DG 3 O6 ? ? A DC 6 A DG 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 6 O2 ? ? ? 1_555 A DG 3 N2 ? ? A DC 6 A DG 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 7 N1 ? ? ? 1_555 A UMS 2 N3 ? ? A DA 7 A UMS 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DA 7 N6 ? ? ? 1_555 A UMS 2 O4 ? ? A DA 7 A UMS 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 8 N3 ? ? ? 1_555 A DG 1 N1 ? ? A DC 8 A DG 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 8 N4 ? ? ? 1_555 A DG 1 O6 ? ? A DC 8 A DG 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 8 O2 ? ? ? 1_555 A DG 1 N2 ? ? A DC 8 A DG 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id SPM _struct_site.pdbx_auth_seq_id 50 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 5 _struct_site.details 'BINDING SITE FOR RESIDUE SPM A 50' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 DC A 6 ? DC A 6 . ? 1_555 ? 2 AC1 5 DA A 7 ? DA A 7 . ? 1_555 ? 3 AC1 5 HOH C . ? HOH A 52 . ? 3_644 ? 4 AC1 5 HOH C . ? HOH A 61 . ? 7_555 ? 5 AC1 5 HOH C . ? HOH A 78 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 101.88 108.00 -6.12 0.70 N 2 1 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 102.27 108.00 -5.73 0.70 N 3 1 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 102.02 108.00 -5.98 0.70 N # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id DC _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 8 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.066 _pdbx_validate_planes.type 'SIDE CHAIN' # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id UMS _pdbx_struct_mod_residue.label_seq_id 2 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id UMS _pdbx_struct_mod_residue.auth_seq_id 2 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id DU _pdbx_struct_mod_residue.details ? # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 82 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id C _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 SPM N1 N N N 147 SPM C2 C N N 148 SPM C3 C N N 149 SPM C4 C N N 150 SPM N5 N N N 151 SPM C6 C N N 152 SPM C7 C N N 153 SPM C8 C N N 154 SPM C9 C N N 155 SPM N10 N N N 156 SPM C11 C N N 157 SPM C12 C N N 158 SPM C13 C N N 159 SPM N14 N N N 160 SPM HN11 H N N 161 SPM HN12 H N N 162 SPM H21 H N N 163 SPM H22 H N N 164 SPM H31 H N N 165 SPM H32 H N N 166 SPM H41 H N N 167 SPM H42 H N N 168 SPM HN5 H N N 169 SPM H61 H N N 170 SPM H62 H N N 171 SPM H71 H N N 172 SPM H72 H N N 173 SPM H81 H N N 174 SPM H82 H N N 175 SPM H91 H N N 176 SPM H92 H N N 177 SPM HN0 H N N 178 SPM H111 H N N 179 SPM H112 H N N 180 SPM H121 H N N 181 SPM H122 H N N 182 SPM H131 H N N 183 SPM H132 H N N 184 SPM HN41 H N N 185 SPM HN42 H N N 186 UMS OP3 O N N 187 UMS P P N N 188 UMS OP1 O N N 189 UMS OP2 O N N 190 UMS "O5'" O N N 191 UMS "C5'" C N N 192 UMS "C4'" C N R 193 UMS "O4'" O N N 194 UMS "C3'" C N R 195 UMS "O3'" O N N 196 UMS "C2'" C N R 197 UMS "SE2'" SE N N 198 UMS "C1'" C N R 199 UMS "CA'" C N N 200 UMS N1 N N N 201 UMS C2 C N N 202 UMS O2 O N N 203 UMS N3 N N N 204 UMS C4 C N N 205 UMS O4 O N N 206 UMS C5 C N N 207 UMS C6 C N N 208 UMS HOP3 H N N 209 UMS HOP2 H N N 210 UMS "H5'" H N N 211 UMS "H5'2" H N N 212 UMS "H4'" H N N 213 UMS "H3'" H N N 214 UMS "HO3'" H N N 215 UMS "H2'" H N N 216 UMS "H1'" H N N 217 UMS "HA'" H N N 218 UMS "HA'2" H N N 219 UMS "HA'3" H N N 220 UMS H3 H N N 221 UMS H5 H N N 222 UMS H6 H N N 223 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 SPM N1 C2 sing N N 152 SPM N1 HN11 sing N N 153 SPM N1 HN12 sing N N 154 SPM C2 C3 sing N N 155 SPM C2 H21 sing N N 156 SPM C2 H22 sing N N 157 SPM C3 C4 sing N N 158 SPM C3 H31 sing N N 159 SPM C3 H32 sing N N 160 SPM C4 N5 sing N N 161 SPM C4 H41 sing N N 162 SPM C4 H42 sing N N 163 SPM N5 C6 sing N N 164 SPM N5 HN5 sing N N 165 SPM C6 C7 sing N N 166 SPM C6 H61 sing N N 167 SPM C6 H62 sing N N 168 SPM C7 C8 sing N N 169 SPM C7 H71 sing N N 170 SPM C7 H72 sing N N 171 SPM C8 C9 sing N N 172 SPM C8 H81 sing N N 173 SPM C8 H82 sing N N 174 SPM C9 N10 sing N N 175 SPM C9 H91 sing N N 176 SPM C9 H92 sing N N 177 SPM N10 C11 sing N N 178 SPM N10 HN0 sing N N 179 SPM C11 C12 sing N N 180 SPM C11 H111 sing N N 181 SPM C11 H112 sing N N 182 SPM C12 C13 sing N N 183 SPM C12 H121 sing N N 184 SPM C12 H122 sing N N 185 SPM C13 N14 sing N N 186 SPM C13 H131 sing N N 187 SPM C13 H132 sing N N 188 SPM N14 HN41 sing N N 189 SPM N14 HN42 sing N N 190 UMS OP3 P sing N N 191 UMS OP3 HOP3 sing N N 192 UMS P OP1 doub N N 193 UMS P OP2 sing N N 194 UMS P "O5'" sing N N 195 UMS OP2 HOP2 sing N N 196 UMS "O5'" "C5'" sing N N 197 UMS "C5'" "C4'" sing N N 198 UMS "C5'" "H5'" sing N N 199 UMS "C5'" "H5'2" sing N N 200 UMS "C4'" "O4'" sing N N 201 UMS "C4'" "C3'" sing N N 202 UMS "C4'" "H4'" sing N N 203 UMS "O4'" "C1'" sing N N 204 UMS "C3'" "O3'" sing N N 205 UMS "C3'" "C2'" sing N N 206 UMS "C3'" "H3'" sing N N 207 UMS "O3'" "HO3'" sing N N 208 UMS "C2'" "SE2'" sing N N 209 UMS "C2'" "C1'" sing N N 210 UMS "C2'" "H2'" sing N N 211 UMS "SE2'" "CA'" sing N N 212 UMS "C1'" N1 sing N N 213 UMS "C1'" "H1'" sing N N 214 UMS "CA'" "HA'" sing N N 215 UMS "CA'" "HA'2" sing N N 216 UMS "CA'" "HA'3" sing N N 217 UMS N1 C2 sing N N 218 UMS N1 C6 sing N N 219 UMS C2 O2 doub N N 220 UMS C2 N3 sing N N 221 UMS N3 C4 sing N N 222 UMS N3 H3 sing N N 223 UMS C4 O4 doub N N 224 UMS C4 C5 sing N N 225 UMS C5 C6 doub N N 226 UMS C5 H5 sing N N 227 UMS C6 H6 sing N N 228 # _ndb_struct_conf_na.entry_id 1Z7I _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 A DC 8 7_555 -0.273 -0.113 -0.248 -16.737 -13.029 -1.719 1 A_DG1:DC8_A A 1 ? A 8 ? 19 1 1 A UMS 2 1_555 A DA 7 7_555 -0.055 -0.099 0.148 -7.610 -12.053 2.877 2 A_UMS2:DA7_A A 2 ? A 7 ? 20 1 1 A DG 3 1_555 A DC 6 7_555 -0.255 -0.136 0.188 -3.852 -12.627 2.289 3 A_DG3:DC6_A A 3 ? A 6 ? 19 1 1 A DT 4 1_555 A DA 5 7_555 -0.094 -0.138 0.208 -2.817 -11.481 -4.402 4 A_DT4:DA5_A A 4 ? A 5 ? 20 1 1 A DA 5 1_555 A DT 4 7_555 0.094 -0.138 0.208 2.817 -11.481 -4.402 5 A_DA5:DT4_A A 5 ? A 4 ? 20 1 1 A DC 6 1_555 A DG 3 7_555 0.255 -0.136 0.188 3.852 -12.627 2.289 6 A_DC6:DG3_A A 6 ? A 3 ? 19 1 1 A DA 7 1_555 A UMS 2 7_555 0.055 -0.099 0.148 7.610 -12.053 2.877 7 A_DA7:UMS2_A A 7 ? A 2 ? 20 1 1 A DC 8 1_555 A DG 1 7_555 0.273 -0.113 -0.248 16.737 -13.029 -1.719 8 A_DC8:DG1_A A 8 ? A 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 A DC 8 7_555 A UMS 2 1_555 A DA 7 7_555 0.530 -0.955 3.151 -1.854 13.355 29.525 -3.831 -1.245 2.464 24.651 3.421 32.396 1 AA_DG1UMS2:DA7DC8_AA A 1 ? A 8 ? A 2 ? A 7 ? 1 A UMS 2 1_555 A DA 7 7_555 A DG 3 1_555 A DC 6 7_555 0.648 -1.399 3.015 0.871 13.430 29.267 -4.536 -1.040 2.196 24.981 -1.620 32.152 2 AA_UMS2DG3:DC6DA7_AA A 2 ? A 7 ? A 3 ? A 6 ? 1 A DG 3 1_555 A DC 6 7_555 A DT 4 1_555 A DA 5 7_555 -0.436 -1.435 3.252 1.037 1.208 36.346 -2.464 0.840 3.191 1.935 -1.661 36.379 3 AA_DG3DT4:DA5DC6_AA A 3 ? A 6 ? A 4 ? A 5 ? 1 A DT 4 1_555 A DA 5 7_555 A DA 5 1_555 A DT 4 7_555 0.000 -1.437 3.013 0.000 7.930 29.803 -4.044 0.000 2.555 15.086 0.000 30.817 4 AA_DT4DA5:DT4DA5_AA A 4 ? A 5 ? A 5 ? A 4 ? 1 A DA 5 1_555 A DT 4 7_555 A DC 6 1_555 A DG 3 7_555 0.436 -1.435 3.252 -1.037 1.208 36.346 -2.464 -0.840 3.191 1.935 1.661 36.379 5 AA_DA5DC6:DG3DT4_AA A 5 ? A 4 ? A 6 ? A 3 ? 1 A DC 6 1_555 A DG 3 7_555 A DA 7 1_555 A UMS 2 7_555 -0.648 -1.399 3.015 -0.871 13.430 29.267 -4.536 1.040 2.196 24.981 1.620 32.152 6 AA_DC6DA7:UMS2DG3_AA A 6 ? A 3 ? A 7 ? A 2 ? 1 A DA 7 1_555 A UMS 2 7_555 A DC 8 1_555 A DG 1 7_555 -0.530 -0.955 3.151 1.854 13.355 29.525 -3.831 1.245 2.464 24.651 -3.421 32.396 7 AA_DA7DC8:DG1UMS2_AA A 7 ? A 2 ? A 8 ? A 1 ? # _atom_sites.entry_id 1Z7I _atom_sites.fract_transf_matrix[1][1] 0.023767 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023767 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.041780 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P SE # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O "O5'" . DG A 1 1 ? 19.215 28.381 5.426 1.00 13.26 ? 1 DG A "O5'" 1 ATOM 2 C "C5'" . DG A 1 1 ? 17.807 28.299 5.255 1.00 12.18 ? 1 DG A "C5'" 1 ATOM 3 C "C4'" . DG A 1 1 ? 17.219 29.433 4.439 1.00 11.12 ? 1 DG A "C4'" 1 ATOM 4 O "O4'" . DG A 1 1 ? 17.392 30.625 5.246 1.00 11.04 ? 1 DG A "O4'" 1 ATOM 5 C "C3'" . DG A 1 1 ? 17.920 29.771 3.131 1.00 10.74 ? 1 DG A "C3'" 1 ATOM 6 O "O3'" . DG A 1 1 ? 17.424 29.032 2.052 1.00 11.07 ? 1 DG A "O3'" 1 ATOM 7 C "C2'" . DG A 1 1 ? 17.655 31.267 2.985 1.00 10.32 ? 1 DG A "C2'" 1 ATOM 8 C "C1'" . DG A 1 1 ? 17.584 31.782 4.408 1.00 10.12 ? 1 DG A "C1'" 1 ATOM 9 N N9 . DG A 1 1 ? 18.950 32.207 4.784 1.00 10.72 ? 1 DG A N9 1 ATOM 10 C C8 . DG A 1 1 ? 19.940 31.477 5.405 1.00 10.64 ? 1 DG A C8 1 ATOM 11 N N7 . DG A 1 1 ? 21.069 32.136 5.521 1.00 11.91 ? 1 DG A N7 1 ATOM 12 C C5 . DG A 1 1 ? 20.806 33.386 4.966 1.00 10.06 ? 1 DG A C5 1 ATOM 13 C C6 . DG A 1 1 ? 21.650 34.557 4.824 1.00 11.10 ? 1 DG A C6 1 ATOM 14 O O6 . DG A 1 1 ? 22.833 34.716 5.206 1.00 12.32 ? 1 DG A O6 1 ATOM 15 N N1 . DG A 1 1 ? 20.979 35.597 4.201 1.00 11.97 ? 1 DG A N1 1 ATOM 16 C C2 . DG A 1 1 ? 19.671 35.555 3.782 1.00 12.61 ? 1 DG A C2 1 ATOM 17 N N2 . DG A 1 1 ? 19.204 36.667 3.221 1.00 13.73 ? 1 DG A N2 1 ATOM 18 N N3 . DG A 1 1 ? 18.877 34.499 3.908 1.00 11.55 ? 1 DG A N3 1 ATOM 19 C C4 . DG A 1 1 ? 19.507 33.457 4.507 1.00 10.74 ? 1 DG A C4 1 HETATM 20 P P . UMS A 1 2 ? 18.400 28.595 0.880 1.00 12.03 ? 2 UMS A P 1 HETATM 21 O OP1 . UMS A 1 2 ? 17.605 27.715 -0.003 1.00 12.93 ? 2 UMS A OP1 1 HETATM 22 O OP2 . UMS A 1 2 ? 19.691 28.137 1.414 1.00 14.32 ? 2 UMS A OP2 1 HETATM 23 O "O5'" . UMS A 1 2 ? 18.713 29.917 0.118 1.00 11.01 ? 2 UMS A "O5'" 1 HETATM 24 C "C5'" . UMS A 1 2 ? 17.674 30.623 -0.536 1.00 11.59 ? 2 UMS A "C5'" 1 HETATM 25 C "C4'" . UMS A 1 2 ? 18.166 31.944 -1.081 1.00 10.88 ? 2 UMS A "C4'" 1 HETATM 26 O "O4'" . UMS A 1 2 ? 18.462 32.777 0.065 1.00 11.18 ? 2 UMS A "O4'" 1 HETATM 27 C "C3'" . UMS A 1 2 ? 19.483 31.954 -1.828 1.00 12.98 ? 2 UMS A "C3'" 1 HETATM 28 O "O3'" . UMS A 1 2 ? 19.357 31.648 -3.141 1.00 14.63 ? 2 UMS A "O3'" 1 HETATM 29 C "C2'" . UMS A 1 2 ? 19.918 33.399 -1.704 1.00 12.67 ? 2 UMS A "C2'" 1 HETATM 30 SE "SE2'" . UMS A 1 2 ? 18.649 34.619 -2.869 1.00 15.41 ? 2 UMS A "SE2'" 1 HETATM 31 C "C1'" . UMS A 1 2 ? 19.457 33.751 -0.303 1.00 12.03 ? 2 UMS A "C1'" 1 HETATM 32 C "CA'" . UMS A 1 2 ? 19.571 36.223 -2.662 1.00 15.97 ? 2 UMS A "CA'" 1 HETATM 33 N N1 . UMS A 1 2 ? 20.636 33.399 0.595 1.00 11.49 ? 2 UMS A N1 1 HETATM 34 C C2 . UMS A 1 2 ? 21.581 34.405 0.724 1.00 11.16 ? 2 UMS A C2 1 HETATM 35 O O2 . UMS A 1 2 ? 21.487 35.472 0.141 1.00 13.11 ? 2 UMS A O2 1 HETATM 36 N N3 . UMS A 1 2 ? 22.652 34.119 1.531 1.00 10.81 ? 2 UMS A N3 1 HETATM 37 C C4 . UMS A 1 2 ? 22.903 32.936 2.179 1.00 10.10 ? 2 UMS A C4 1 HETATM 38 O O4 . UMS A 1 2 ? 23.922 32.811 2.856 1.00 11.76 ? 2 UMS A O4 1 HETATM 39 C C5 . UMS A 1 2 ? 21.895 31.903 1.990 1.00 10.90 ? 2 UMS A C5 1 HETATM 40 C C6 . UMS A 1 2 ? 20.810 32.185 1.233 1.00 11.43 ? 2 UMS A C6 1 ATOM 41 P P . DG A 1 3 ? 20.529 30.840 -3.834 1.00 17.00 ? 3 DG A P 1 ATOM 42 O OP1 . DG A 1 3 ? 19.778 30.405 -4.987 1.00 15.77 ? 3 DG A OP1 1 ATOM 43 O OP2 . DG A 1 3 ? 21.171 29.856 -2.922 1.00 16.22 ? 3 DG A OP2 1 ATOM 44 O "O5'" . DG A 1 3 ? 21.616 31.892 -4.178 1.00 15.91 ? 3 DG A "O5'" 1 ATOM 45 C "C5'" . DG A 1 3 ? 21.280 32.980 -5.004 1.00 15.67 ? 3 DG A "C5'" 1 ATOM 46 C "C4'" . DG A 1 3 ? 22.334 34.050 -4.926 1.00 14.26 ? 3 DG A "C4'" 1 ATOM 47 O "O4'" . DG A 1 3 ? 22.373 34.338 -3.502 1.00 15.44 ? 3 DG A "O4'" 1 ATOM 48 C "C3'" . DG A 1 3 ? 23.770 33.666 -5.271 1.00 14.21 ? 3 DG A "C3'" 1 ATOM 49 O "O3'" . DG A 1 3 ? 24.031 33.926 -6.620 1.00 13.71 ? 3 DG A "O3'" 1 ATOM 50 C "C2'" . DG A 1 3 ? 24.562 34.610 -4.379 1.00 14.56 ? 3 DG A "C2'" 1 ATOM 51 C "C1'" . DG A 1 3 ? 23.626 34.950 -3.216 1.00 12.97 ? 3 DG A "C1'" 1 ATOM 52 N N9 . DG A 1 3 ? 24.128 34.129 -2.100 1.00 11.07 ? 3 DG A N9 1 ATOM 53 C C8 . DG A 1 3 ? 23.743 32.894 -1.620 1.00 11.33 ? 3 DG A C8 1 ATOM 54 N N7 . DG A 1 3 ? 24.489 32.474 -0.621 1.00 11.54 ? 3 DG A N7 1 ATOM 55 C C5 . DG A 1 3 ? 25.424 33.500 -0.429 1.00 8.93 ? 3 DG A C5 1 ATOM 56 C C6 . DG A 1 3 ? 26.517 33.643 0.529 1.00 8.41 ? 3 DG A C6 1 ATOM 57 O O6 . DG A 1 3 ? 26.871 32.857 1.426 1.00 9.75 ? 3 DG A O6 1 ATOM 58 N N1 . DG A 1 3 ? 27.204 34.837 0.343 1.00 9.22 ? 3 DG A N1 1 ATOM 59 C C2 . DG A 1 3 ? 26.912 35.775 -0.605 1.00 8.21 ? 3 DG A C2 1 ATOM 60 N N2 . DG A 1 3 ? 27.698 36.862 -0.649 1.00 9.73 ? 3 DG A N2 1 ATOM 61 N N3 . DG A 1 3 ? 25.918 35.667 -1.467 1.00 10.39 ? 3 DG A N3 1 ATOM 62 C C4 . DG A 1 3 ? 25.220 34.515 -1.323 1.00 9.99 ? 3 DG A C4 1 ATOM 63 P P . DT A 1 4 ? 25.369 33.415 -7.286 1.00 14.35 ? 4 DT A P 1 ATOM 64 O OP1 . DT A 1 4 ? 25.171 33.738 -8.732 1.00 17.25 ? 4 DT A OP1 1 ATOM 65 O OP2 . DT A 1 4 ? 25.688 32.094 -6.908 1.00 14.62 ? 4 DT A OP2 1 ATOM 66 O "O5'" . DT A 1 4 ? 26.511 34.310 -6.718 1.00 12.35 ? 4 DT A "O5'" 1 ATOM 67 C "C5'" . DT A 1 4 ? 26.540 35.677 -7.033 1.00 13.07 ? 4 DT A "C5'" 1 ATOM 68 C "C4'" . DT A 1 4 ? 27.772 36.333 -6.460 1.00 12.87 ? 4 DT A "C4'" 1 ATOM 69 O "O4'" . DT A 1 4 ? 27.625 36.223 -5.019 1.00 12.10 ? 4 DT A "O4'" 1 ATOM 70 C "C3'" . DT A 1 4 ? 29.080 35.625 -6.774 1.00 12.35 ? 4 DT A "C3'" 1 ATOM 71 O "O3'" . DT A 1 4 ? 29.654 36.162 -7.930 1.00 12.99 ? 4 DT A "O3'" 1 ATOM 72 C "C2'" . DT A 1 4 ? 29.928 35.921 -5.543 1.00 12.66 ? 4 DT A "C2'" 1 ATOM 73 C "C1'" . DT A 1 4 ? 28.930 36.180 -4.425 1.00 11.55 ? 4 DT A "C1'" 1 ATOM 74 N N1 . DT A 1 4 ? 28.859 34.908 -3.597 1.00 10.98 ? 4 DT A N1 1 ATOM 75 C C2 . DT A 1 4 ? 29.749 34.822 -2.550 1.00 9.55 ? 4 DT A C2 1 ATOM 76 O O2 . DT A 1 4 ? 30.598 35.665 -2.345 1.00 9.79 ? 4 DT A O2 1 ATOM 77 N N3 . DT A 1 4 ? 29.634 33.699 -1.768 1.00 7.93 ? 4 DT A N3 1 ATOM 78 C C4 . DT A 1 4 ? 28.747 32.652 -1.955 1.00 8.42 ? 4 DT A C4 1 ATOM 79 O O4 . DT A 1 4 ? 28.721 31.728 -1.158 1.00 9.50 ? 4 DT A O4 1 ATOM 80 C C5 . DT A 1 4 ? 27.894 32.771 -3.115 1.00 9.60 ? 4 DT A C5 1 ATOM 81 C C7 . DT A 1 4 ? 26.944 31.660 -3.439 1.00 12.34 ? 4 DT A C7 1 ATOM 82 C C6 . DT A 1 4 ? 27.982 33.875 -3.858 1.00 10.69 ? 4 DT A C6 1 ATOM 83 P P . DA A 1 5 ? 30.801 35.389 -8.667 1.00 14.38 ? 5 DA A P 1 ATOM 84 O OP1 . DA A 1 5 ? 30.925 36.075 -9.995 1.00 16.99 ? 5 DA A OP1 1 ATOM 85 O OP2 . DA A 1 5 ? 30.632 33.928 -8.620 1.00 16.77 ? 5 DA A OP2 1 ATOM 86 O "O5'" . DA A 1 5 ? 32.022 35.754 -7.784 1.00 12.00 ? 5 DA A "O5'" 1 ATOM 87 C "C5'" . DA A 1 5 ? 33.043 34.818 -7.507 1.00 12.07 ? 5 DA A "C5'" 1 ATOM 88 C "C4'" . DA A 1 5 ? 33.964 35.414 -6.475 1.00 9.45 ? 5 DA A "C4'" 1 ATOM 89 O "O4'" . DA A 1 5 ? 33.155 35.484 -5.265 1.00 10.56 ? 5 DA A "O4'" 1 ATOM 90 C "C3'" . DA A 1 5 ? 35.145 34.529 -6.121 1.00 11.07 ? 5 DA A "C3'" 1 ATOM 91 O "O3'" . DA A 1 5 ? 36.286 34.910 -6.822 1.00 11.08 ? 5 DA A "O3'" 1 ATOM 92 C "C2'" . DA A 1 5 ? 35.297 34.711 -4.625 1.00 10.93 ? 5 DA A "C2'" 1 ATOM 93 C "C1'" . DA A 1 5 ? 33.874 34.963 -4.154 1.00 9.15 ? 5 DA A "C1'" 1 ATOM 94 N N9 . DA A 1 5 ? 33.210 33.710 -3.736 1.00 7.78 ? 5 DA A N9 1 ATOM 95 C C8 . DA A 1 5 ? 32.159 33.066 -4.363 1.00 8.36 ? 5 DA A C8 1 ATOM 96 N N7 . DA A 1 5 ? 31.712 32.027 -3.694 1.00 8.69 ? 5 DA A N7 1 ATOM 97 C C5 . DA A 1 5 ? 32.533 31.964 -2.577 1.00 7.89 ? 5 DA A C5 1 ATOM 98 C C6 . DA A 1 5 ? 32.575 31.100 -1.463 1.00 7.35 ? 5 DA A C6 1 ATOM 99 N N6 . DA A 1 5 ? 31.724 30.087 -1.298 1.00 8.31 ? 5 DA A N6 1 ATOM 100 N N1 . DA A 1 5 ? 33.519 31.314 -0.522 1.00 8.07 ? 5 DA A N1 1 ATOM 101 C C2 . DA A 1 5 ? 34.369 32.325 -0.703 1.00 8.06 ? 5 DA A C2 1 ATOM 102 N N3 . DA A 1 5 ? 34.435 33.209 -1.696 1.00 7.56 ? 5 DA A N3 1 ATOM 103 C C4 . DA A 1 5 ? 33.478 32.974 -2.605 1.00 7.17 ? 5 DA A C4 1 ATOM 104 P P . DC A 1 6 ? 37.252 33.788 -7.387 1.00 12.15 ? 6 DC A P 1 ATOM 105 O OP1 . DC A 1 6 ? 38.306 34.500 -8.165 1.00 15.19 ? 6 DC A OP1 1 ATOM 106 O OP2 . DC A 1 6 ? 36.512 32.691 -8.004 1.00 13.89 ? 6 DC A OP2 1 ATOM 107 O "O5'" . DC A 1 6 ? 37.898 33.159 -6.118 1.00 10.71 ? 6 DC A "O5'" 1 ATOM 108 C "C5'" . DC A 1 6 ? 38.735 33.945 -5.293 1.00 10.29 ? 6 DC A "C5'" 1 ATOM 109 C "C4'" . DC A 1 6 ? 39.156 33.204 -4.050 1.00 10.84 ? 6 DC A "C4'" 1 ATOM 110 O "O4'" . DC A 1 6 ? 37.963 33.069 -3.229 1.00 11.01 ? 6 DC A "O4'" 1 ATOM 111 C "C3'" . DC A 1 6 ? 39.633 31.787 -4.250 1.00 11.23 ? 6 DC A "C3'" 1 ATOM 112 O "O3'" . DC A 1 6 ? 40.984 31.710 -4.588 1.00 13.66 ? 6 DC A "O3'" 1 ATOM 113 C "C2'" . DC A 1 6 ? 39.302 31.150 -2.909 1.00 11.90 ? 6 DC A "C2'" 1 ATOM 114 C "C1'" . DC A 1 6 ? 38.021 31.853 -2.490 1.00 10.62 ? 6 DC A "C1'" 1 ATOM 115 N N1 . DC A 1 6 ? 36.868 31.012 -2.875 1.00 9.49 ? 6 DC A N1 1 ATOM 116 C C2 . DC A 1 6 ? 36.494 29.990 -2.002 1.00 8.85 ? 6 DC A C2 1 ATOM 117 O O2 . DC A 1 6 ? 37.195 29.804 -0.990 1.00 10.60 ? 6 DC A O2 1 ATOM 118 N N3 . DC A 1 6 ? 35.419 29.223 -2.286 1.00 8.82 ? 6 DC A N3 1 ATOM 119 C C4 . DC A 1 6 ? 34.741 29.418 -3.405 1.00 8.64 ? 6 DC A C4 1 ATOM 120 N N4 . DC A 1 6 ? 33.692 28.632 -3.642 1.00 9.21 ? 6 DC A N4 1 ATOM 121 C C5 . DC A 1 6 ? 35.109 30.430 -4.340 1.00 7.81 ? 6 DC A C5 1 ATOM 122 C C6 . DC A 1 6 ? 36.177 31.198 -4.046 1.00 8.77 ? 6 DC A C6 1 ATOM 123 P P . DA A 1 7 ? 41.499 30.468 -5.406 1.00 15.12 ? 7 DA A P 1 ATOM 124 O OP1 . DA A 1 7 ? 42.871 30.820 -5.918 1.00 16.03 ? 7 DA A OP1 1 ATOM 125 O OP2 . DA A 1 7 ? 40.475 29.942 -6.356 1.00 15.74 ? 7 DA A OP2 1 ATOM 126 O "O5'" . DA A 1 7 ? 41.622 29.360 -4.333 1.00 13.12 ? 7 DA A "O5'" 1 ATOM 127 C "C5'" . DA A 1 7 ? 42.476 29.545 -3.209 1.00 12.78 ? 7 DA A "C5'" 1 ATOM 128 C "C4'" . DA A 1 7 ? 42.453 28.341 -2.300 1.00 10.98 ? 7 DA A "C4'" 1 ATOM 129 O "O4'" . DA A 1 7 ? 41.121 28.288 -1.727 1.00 10.96 ? 7 DA A "O4'" 1 ATOM 130 C "C3'" . DA A 1 7 ? 42.628 27.013 -3.009 1.00 11.87 ? 7 DA A "C3'" 1 ATOM 131 O "O3'" . DA A 1 7 ? 43.971 26.619 -2.991 1.00 13.09 ? 7 DA A "O3'" 1 ATOM 132 C "C2'" . DA A 1 7 ? 41.748 26.051 -2.231 1.00 12.03 ? 7 DA A "C2'" 1 ATOM 133 C "C1'" . DA A 1 7 ? 40.702 26.945 -1.581 1.00 9.29 ? 7 DA A "C1'" 1 ATOM 134 N N9 . DA A 1 7 ? 39.440 26.824 -2.307 1.00 9.66 ? 7 DA A N9 1 ATOM 135 C C8 . DA A 1 7 ? 39.019 27.548 -3.374 1.00 9.60 ? 7 DA A C8 1 ATOM 136 N N7 . DA A 1 7 ? 37.808 27.235 -3.786 1.00 9.23 ? 7 DA A N7 1 ATOM 137 C C5 . DA A 1 7 ? 37.422 26.222 -2.922 1.00 8.20 ? 7 DA A C5 1 ATOM 138 C C6 . DA A 1 7 ? 36.240 25.459 -2.801 1.00 8.45 ? 7 DA A C6 1 ATOM 139 N N6 . DA A 1 7 ? 35.160 25.630 -3.571 1.00 9.36 ? 7 DA A N6 1 ATOM 140 N N1 . DA A 1 7 ? 36.194 24.519 -1.853 1.00 10.28 ? 7 DA A N1 1 ATOM 141 C C2 . DA A 1 7 ? 37.256 24.356 -1.066 1.00 10.70 ? 7 DA A C2 1 ATOM 142 N N3 . DA A 1 7 ? 38.418 25.015 -1.071 1.00 9.51 ? 7 DA A N3 1 ATOM 143 C C4 . DA A 1 7 ? 38.427 25.947 -2.019 1.00 8.19 ? 7 DA A C4 1 ATOM 144 P P . DC A 1 8 ? 44.520 25.708 -4.150 1.00 14.51 ? 8 DC A P 1 ATOM 145 O OP1 . DC A 1 8 ? 45.995 25.706 -3.946 1.00 16.73 ? 8 DC A OP1 1 ATOM 146 O OP2 . DC A 1 8 ? 43.954 26.123 -5.468 1.00 17.40 ? 8 DC A OP2 1 ATOM 147 O "O5'" . DC A 1 8 ? 43.982 24.301 -3.806 1.00 13.67 ? 8 DC A "O5'" 1 ATOM 148 C "C5'" . DC A 1 8 ? 44.328 23.666 -2.552 1.00 14.56 ? 8 DC A "C5'" 1 ATOM 149 C "C4'" . DC A 1 8 ? 43.691 22.295 -2.420 1.00 14.71 ? 8 DC A "C4'" 1 ATOM 150 O "O4'" . DC A 1 8 ? 42.255 22.501 -2.347 1.00 15.31 ? 8 DC A "O4'" 1 ATOM 151 C "C3'" . DC A 1 8 ? 43.927 21.293 -3.554 1.00 16.29 ? 8 DC A "C3'" 1 ATOM 152 O "O3'" . DC A 1 8 ? 44.035 19.987 -3.001 1.00 19.30 ? 8 DC A "O3'" 1 ATOM 153 C "C2'" . DC A 1 8 ? 42.633 21.338 -4.347 1.00 16.94 ? 8 DC A "C2'" 1 ATOM 154 C "C1'" . DC A 1 8 ? 41.592 21.661 -3.278 1.00 15.60 ? 8 DC A "C1'" 1 ATOM 155 N N1 . DC A 1 8 ? 40.422 22.397 -3.806 1.00 13.87 ? 8 DC A N1 1 ATOM 156 C C2 . DC A 1 8 ? 39.120 21.897 -3.581 1.00 12.87 ? 8 DC A C2 1 ATOM 157 O O2 . DC A 1 8 ? 38.968 20.934 -2.841 1.00 12.82 ? 8 DC A O2 1 ATOM 158 N N3 . DC A 1 8 ? 38.082 22.488 -4.181 1.00 10.86 ? 8 DC A N3 1 ATOM 159 C C4 . DC A 1 8 ? 38.268 23.541 -4.961 1.00 11.43 ? 8 DC A C4 1 ATOM 160 N N4 . DC A 1 8 ? 37.215 24.047 -5.600 1.00 11.47 ? 8 DC A N4 1 ATOM 161 C C5 . DC A 1 8 ? 39.557 24.121 -5.148 1.00 12.39 ? 8 DC A C5 1 ATOM 162 C C6 . DC A 1 8 ? 40.594 23.524 -4.553 1.00 13.45 ? 8 DC A C6 1 HETATM 163 N N5 . SPM B 2 . ? 35.072 27.012 -6.428 1.00 21.77 ? 50 SPM A N5 1 HETATM 164 C C6 . SPM B 2 . ? 36.227 27.619 -6.051 1.00 24.43 ? 50 SPM A C6 1 HETATM 165 C C7 . SPM B 2 . ? 37.425 28.609 -6.278 1.00 22.53 ? 50 SPM A C7 1 HETATM 166 O O . HOH C 3 . ? 35.899 35.624 -1.341 1.00 9.76 ? 51 HOH A O 1 HETATM 167 O O . HOH C 3 . ? 47.179 25.397 -1.655 1.00 16.57 ? 52 HOH A O 1 HETATM 168 O O . HOH C 3 . ? 38.131 36.735 -2.563 1.00 15.37 ? 53 HOH A O 1 HETATM 169 O O . HOH C 3 . ? 40.819 23.610 0.072 1.00 17.02 ? 54 HOH A O 1 HETATM 170 O O . HOH C 3 . ? 19.876 27.512 8.051 1.00 19.73 ? 55 HOH A O 1 HETATM 171 O O . HOH C 3 . ? 24.456 29.955 0.625 1.00 19.14 ? 56 HOH A O 1 HETATM 172 O O . HOH C 3 . ? 16.680 25.336 0.904 1.00 18.19 ? 57 HOH A O 1 HETATM 173 O O . HOH C 3 . ? 20.788 38.072 0.188 1.00 16.29 ? 58 HOH A O 1 HETATM 174 O O . HOH C 3 . ? 25.835 31.053 2.924 1.00 17.63 ? 59 HOH A O 1 HETATM 175 O O . HOH C 3 . ? 27.779 29.198 -0.901 1.00 20.97 ? 60 HOH A O 1 HETATM 176 O O . HOH C 3 . ? 24.665 33.307 6.523 1.00 18.45 ? 61 HOH A O 1 HETATM 177 O O . HOH C 3 . ? 25.552 37.620 -3.388 1.00 18.60 ? 62 HOH A O 1 HETATM 178 O O . HOH C 3 . ? 28.214 30.738 -6.754 1.00 20.91 ? 63 HOH A O 1 HETATM 179 O O . HOH C 3 . ? 21.893 28.772 -0.197 1.00 22.42 ? 64 HOH A O 1 HETATM 180 O O . HOH C 3 . ? 40.639 18.016 -4.060 1.00 22.50 ? 65 HOH A O 1 HETATM 181 O O . HOH C 3 . ? 42.154 25.511 -7.132 1.00 20.43 ? 66 HOH A O 1 HETATM 182 O O . HOH C 3 . ? 40.237 27.321 -7.392 1.00 22.74 ? 67 HOH A O 1 HETATM 183 O O . HOH C 3 . ? 29.964 30.144 -4.765 1.00 23.05 ? 68 HOH A O 1 HETATM 184 O O . HOH C 3 . ? 23.230 30.706 6.613 1.00 28.84 ? 69 HOH A O 1 HETATM 185 O O . HOH C 3 . ? 17.253 27.161 -2.569 1.00 26.67 ? 70 HOH A O 1 HETATM 186 O O . HOH C 3 . ? 39.245 37.001 -7.139 1.00 24.97 ? 71 HOH A O 1 HETATM 187 O O . HOH C 3 . ? 24.615 29.643 -5.731 1.00 30.66 ? 72 HOH A O 1 HETATM 188 O O . HOH C 3 . ? 25.378 38.822 -5.902 1.00 26.49 ? 73 HOH A O 1 HETATM 189 O O . HOH C 3 . ? 31.742 26.408 -5.127 1.00 31.28 ? 74 HOH A O 1 HETATM 190 O O . HOH C 3 . ? 24.066 29.151 -3.431 1.00 27.42 ? 75 HOH A O 1 HETATM 191 O O . HOH C 3 . ? 32.147 28.889 -6.323 1.00 25.02 ? 76 HOH A O 1 HETATM 192 O O . HOH C 3 . ? 28.024 29.787 3.015 1.00 33.72 ? 77 HOH A O 1 HETATM 193 O O . HOH C 3 . ? 35.843 30.138 -7.908 1.00 27.43 ? 78 HOH A O 1 HETATM 194 O O . HOH C 3 . ? 38.589 30.080 -11.287 1.00 35.37 ? 79 HOH A O 1 HETATM 195 O O . HOH C 3 . ? 44.573 28.818 -6.553 1.00 32.87 ? 80 HOH A O 1 HETATM 196 O O . HOH C 3 . ? 28.490 36.772 -11.597 1.00 32.04 ? 81 HOH A O 1 HETATM 197 O O . HOH C 3 . ? 38.578 38.578 0.000 0.50 25.92 ? 82 HOH A O 1 HETATM 198 O O . HOH C 3 . ? 41.788 18.348 -1.340 1.00 31.16 ? 83 HOH A O 1 HETATM 199 O O . HOH C 3 . ? 35.269 28.735 -9.955 1.00 34.40 ? 84 HOH A O 1 HETATM 200 O O . HOH C 3 . ? 25.490 28.509 -1.209 1.00 32.13 ? 85 HOH A O 1 HETATM 201 O O . HOH C 3 . ? 27.789 33.472 -10.901 1.00 36.80 ? 86 HOH A O 1 HETATM 202 O O . HOH C 3 . ? 33.010 31.095 -7.509 1.00 32.27 ? 87 HOH A O 1 HETATM 203 O O . HOH C 3 . ? 20.914 27.149 10.752 1.00 32.68 ? 88 HOH A O 1 HETATM 204 O O . HOH C 3 . ? 42.766 26.198 -9.699 1.00 31.03 ? 89 HOH A O 1 HETATM 205 O O . HOH C 3 . ? 40.677 31.238 -9.324 1.00 39.10 ? 90 HOH A O 1 HETATM 206 O O . HOH C 3 . ? 41.798 28.876 -9.742 1.00 35.93 ? 91 HOH A O 1 HETATM 207 O O . HOH C 3 . ? 33.112 37.335 -10.964 1.00 28.24 ? 92 HOH A O 1 HETATM 208 O O . HOH C 3 . ? 40.758 26.327 -11.980 1.00 36.49 ? 93 HOH A O 1 HETATM 209 O O . HOH C 3 . ? 35.472 36.463 -10.398 1.00 37.62 ? 94 HOH A O 1 #