0.01440 0.00000 0.00000 0.00000 0.01440 0.00000 0.00000 0.00000 0.00531 0.00000 0.00000 0.00000 Joint Center for Structural Genomics (JCSG) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.000 90.000 90.000 69.444 69.444 188.165 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking To be published 0353 Crystal structure of Peptide chain release factor 1 (RF-1) (SMU.1085) from Streptococcus mutans at 2.34 A resolution 10.2210/pdb1zbt/pdb pdb_00001zbt 100 1 KOHZU: Double Crystal Si(111) CCD 2005-01-21 ADSC QUANTUM 210 Double Crystal Si(111) MAD M x-ray 1 0.99187 1.0 0.97960 1.0 0.97942 1.0 8.2.1 ALS 0.99187,0.97960,0.97942 SYNCHROTRON ALS BEAMLINE 8.2.1 42635.152 Peptide chain release factor 1 1 man polymer 18.015 water 61 nat water RF-1 no yes MGSDKIHHHHHH(MSE)NIYDQLQAVEDRYEELGELLSDPDVVSDTKRF(MSE)ELSREEANSRETVAVYREYKQVVQNI ADAQE(MSE)IKDASGDPELEE(MSE)AKEELKNSKVAKEEYEEKLRFLLLPKDPNDDKNIILEIRGAAGGDEAALFAGD LLN(MSE)YQKYAENQGWKFEV(MSE)EASANGVGGLKEVVA(MSE)VSGQSVYSKLKYESGAHRVQRVPVTESQGRVHT STATVLV(MSE)PEVEEVEYEIDPKDLRVDIYHASGAGGQNVNKVATAVRIIHLPTNIKVE(MSE)QEERTQQKNRDKA (MSE)KIIRARVADHFAQIAQDEQDAERKSTVGTGDRSERIRTYNFPQNRVTDHRIGLTLQKLDSILSGKLDEVIDALIL YDQTQKLEELNK MGSDKIHHHHHHMNIYDQLQAVEDRYEELGELLSDPDVVSDTKRFMELSREEANSRETVAVYREYKQVVQNIADAQEMIK DASGDPELEEMAKEELKNSKVAKEEYEEKLRFLLLPKDPNDDKNIILEIRGAAGGDEAALFAGDLLNMYQKYAENQGWKF EVMEASANGVGGLKEVVAMVSGQSVYSKLKYESGAHRVQRVPVTESQGRVHTSTATVLVMPEVEEVEYEIDPKDLRVDIY HASGAGGQNVNKVATAVRIIHLPTNIKVEMQEERTQQKNRDKAMKIIRARVADHFAQIAQDEQDAERKSTVGTGDRSERI RTYNFPQNRVTDHRIGLTLQKLDSILSGKLDEVIDALILYDQTQKLEELNK A 358002 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Streptococcus Escherichia sample prfA, rf1 1309 Streptococcus mutans 562 Escherichia coli Plasmid 1 3.18 61.03 VAPOR DIFFUSION,SITTING DROP,NANODROP 6.5 13.0% PEG-8000, 0.2M Ca(OAc)2, 20.0% Glycerol, 0.1M Cacodylate pH 6.5, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K 277 Joint Center for Structural Genomics JCSG PSI, Protein Structure Initiative database_2 struct_conn struct_ref_seq_dif repository Initial release Version format compliance Advisory Version format compliance Database references Derived calculations 1 0 2005-05-03 1 1 2008-04-30 1 2 2011-07-13 1 3 2023-01-25 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_ref_seq_dif.details Y RCSB Y RCSB 2005-04-08 REL REL HOH water HOH 1 2 HOH HOH 360 A HOH 2 2 HOH HOH 361 A HOH 3 2 HOH HOH 362 A HOH 4 2 HOH HOH 363 A HOH 5 2 HOH HOH 364 A HOH 6 2 HOH HOH 365 A HOH 7 2 HOH HOH 366 A HOH 8 2 HOH HOH 367 A HOH 9 2 HOH HOH 368 A HOH 10 2 HOH HOH 369 A HOH 11 2 HOH HOH 370 A HOH 12 2 HOH HOH 371 A HOH 13 2 HOH HOH 372 A HOH 14 2 HOH HOH 373 A HOH 15 2 HOH HOH 374 A HOH 16 2 HOH HOH 375 A HOH 17 2 HOH HOH 376 A HOH 18 2 HOH HOH 377 A HOH 19 2 HOH HOH 378 A HOH 20 2 HOH HOH 379 A HOH 21 2 HOH HOH 380 A HOH 22 2 HOH HOH 381 A HOH 23 2 HOH HOH 382 A HOH 24 2 HOH HOH 383 A HOH 25 2 HOH HOH 384 A HOH 26 2 HOH HOH 385 A HOH 27 2 HOH HOH 386 A HOH 28 2 HOH HOH 387 A HOH 29 2 HOH HOH 388 A HOH 30 2 HOH HOH 389 A HOH 31 2 HOH HOH 390 A HOH 32 2 HOH HOH 391 A HOH 33 2 HOH HOH 392 A HOH 34 2 HOH HOH 393 A HOH 35 2 HOH HOH 394 A HOH 36 2 HOH HOH 395 A HOH 37 2 HOH HOH 396 A HOH 38 2 HOH HOH 397 A HOH 39 2 HOH HOH 398 A HOH 40 2 HOH HOH 399 A HOH 41 2 HOH HOH 400 A HOH 42 2 HOH HOH 401 A HOH 43 2 HOH HOH 402 A HOH 44 2 HOH HOH 403 A HOH 45 2 HOH HOH 404 A HOH 46 2 HOH HOH 405 A HOH 47 2 HOH HOH 406 A HOH 48 2 HOH HOH 407 A HOH 49 2 HOH HOH 408 A HOH 50 2 HOH HOH 409 A HOH 51 2 HOH HOH 410 A HOH 52 2 HOH HOH 411 A HOH 53 2 HOH HOH 412 A HOH 54 2 HOH HOH 413 A HOH 55 2 HOH HOH 414 A HOH 56 2 HOH HOH 415 A HOH 57 2 HOH HOH 416 A HOH 58 2 HOH HOH 417 A HOH 59 2 HOH HOH 418 A HOH 60 2 HOH HOH 419 A HOH 61 2 HOH HOH 420 A n 1 -11 A n 2 -10 A n 3 -9 A n 4 -8 A n 5 -7 A n 6 -6 A n 7 -5 A n 8 -4 A n 9 -3 A n 10 -2 A HIS -1 n 11 HIS -1 A HIS 0 n 12 HIS 0 A MSE 1 n 13 MSE 1 A ASN 2 n 14 ASN 2 A ILE 3 n 15 ILE 3 A TYR 4 n 16 TYR 4 A ASP 5 n 17 ASP 5 A GLN 6 n 18 GLN 6 A LEU 7 n 19 LEU 7 A GLN 8 n 20 GLN 8 A ALA 9 n 21 ALA 9 A VAL 10 n 22 VAL 10 A GLU 11 n 23 GLU 11 A ASP 12 n 24 ASP 12 A ARG 13 n 25 ARG 13 A TYR 14 n 26 TYR 14 A GLU 15 n 27 GLU 15 A GLU 16 n 28 GLU 16 A LEU 17 n 29 LEU 17 A n 30 18 A n 31 19 A n 32 20 A n 33 21 A n 34 22 A n 35 23 A n 36 24 A n 37 25 A n 38 26 A n 39 27 A n 40 28 A n 41 29 A n 42 30 A n 43 31 A n 44 32 A n 45 33 A n 46 34 A n 47 35 A n 48 36 A n 49 37 A ARG 38 n 50 ARG 38 A GLU 39 n 51 GLU 39 A GLU 40 n 52 GLU 40 A ALA 41 n 53 ALA 41 A ASN 42 n 54 ASN 42 A SER 43 n 55 SER 43 A ARG 44 n 56 ARG 44 A GLU 45 n 57 GLU 45 A THR 46 n 58 THR 46 A VAL 47 n 59 VAL 47 A ALA 48 n 60 ALA 48 A VAL 49 n 61 VAL 49 A TYR 50 n 62 TYR 50 A ARG 51 n 63 ARG 51 A GLU 52 n 64 GLU 52 A TYR 53 n 65 TYR 53 A LYS 54 n 66 LYS 54 A GLN 55 n 67 GLN 55 A VAL 56 n 68 VAL 56 A VAL 57 n 69 VAL 57 A GLN 58 n 70 GLN 58 A ASN 59 n 71 ASN 59 A ILE 60 n 72 ILE 60 A ALA 61 n 73 ALA 61 A ASP 62 n 74 ASP 62 A ALA 63 n 75 ALA 63 A GLN 64 n 76 GLN 64 A GLU 65 n 77 GLU 65 A MSE 66 n 78 MSE 66 A n 79 67 A n 80 68 A n 81 69 A n 82 70 A n 83 71 A n 84 72 A n 85 73 A PRO 74 n 86 PRO 74 A GLU 75 n 87 GLU 75 A LEU 76 n 88 LEU 76 A GLU 77 n 89 GLU 77 A GLU 78 n 90 GLU 78 A MSE 79 n 91 MSE 79 A ALA 80 n 92 ALA 80 A LYS 81 n 93 LYS 81 A GLU 82 n 94 GLU 82 A GLU 83 n 95 GLU 83 A LEU 84 n 96 LEU 84 A LYS 85 n 97 LYS 85 A ASN 86 n 98 ASN 86 A SER 87 n 99 SER 87 A LYS 88 n 100 LYS 88 A VAL 89 n 101 VAL 89 A ALA 90 n 102 ALA 90 A LYS 91 n 103 LYS 91 A GLU 92 n 104 GLU 92 A GLU 93 n 105 GLU 93 A TYR 94 n 106 TYR 94 A GLU 95 n 107 GLU 95 A GLU 96 n 108 GLU 96 A LYS 97 n 109 LYS 97 A LEU 98 n 110 LEU 98 A ARG 99 n 111 ARG 99 A PHE 100 n 112 PHE 100 A LEU 101 n 113 LEU 101 A LEU 102 n 114 LEU 102 A LEU 103 n 115 LEU 103 A PRO 104 n 116 PRO 104 A LYS 105 n 117 LYS 105 A ASP 106 n 118 ASP 106 A PRO 107 n 119 PRO 107 A ASN 108 n 120 ASN 108 A ASP 109 n 121 ASP 109 A ASP 110 n 122 ASP 110 A LYS 111 n 123 LYS 111 A ASN 112 n 124 ASN 112 A ILE 113 n 125 ILE 113 A ILE 114 n 126 ILE 114 A LEU 115 n 127 LEU 115 A GLU 116 n 128 GLU 116 A ILE 117 n 129 ILE 117 A ARG 118 n 130 ARG 118 A GLY 119 n 131 GLY 119 A ALA 120 n 132 ALA 120 A ALA 121 n 133 ALA 121 A GLY 122 n 134 GLY 122 A GLY 123 n 135 GLY 123 A ASP 124 n 136 ASP 124 A GLU 125 n 137 GLU 125 A ALA 126 n 138 ALA 126 A ALA 127 n 139 ALA 127 A LEU 128 n 140 LEU 128 A PHE 129 n 141 PHE 129 A ALA 130 n 142 ALA 130 A GLY 131 n 143 GLY 131 A ASP 132 n 144 ASP 132 A LEU 133 n 145 LEU 133 A LEU 134 n 146 LEU 134 A ASN 135 n 147 ASN 135 A MSE 136 n 148 MSE 136 A TYR 137 n 149 TYR 137 A GLN 138 n 150 GLN 138 A LYS 139 n 151 LYS 139 A TYR 140 n 152 TYR 140 A ALA 141 n 153 ALA 141 A GLU 142 n 154 GLU 142 A ASN 143 n 155 ASN 143 A GLN 144 n 156 GLN 144 A GLY 145 n 157 GLY 145 A TRP 146 n 158 TRP 146 A LYS 147 n 159 LYS 147 A PHE 148 n 160 PHE 148 A GLU 149 n 161 GLU 149 A VAL 150 n 162 VAL 150 A MSE 151 n 163 MSE 151 A GLU 152 n 164 GLU 152 A ALA 153 n 165 ALA 153 A SER 154 n 166 SER 154 A ALA 155 n 167 ALA 155 A ASN 156 n 168 ASN 156 A GLY 157 n 169 GLY 157 A VAL 158 n 170 VAL 158 A GLY 159 n 171 GLY 159 A GLY 160 n 172 GLY 160 A LEU 161 n 173 LEU 161 A LYS 162 n 174 LYS 162 A GLU 163 n 175 GLU 163 A VAL 164 n 176 VAL 164 A VAL 165 n 177 VAL 165 A ALA 166 n 178 ALA 166 A MSE 167 n 179 MSE 167 A VAL 168 n 180 VAL 168 A SER 169 n 181 SER 169 A GLY 170 n 182 GLY 170 A GLN 171 n 183 GLN 171 A SER 172 n 184 SER 172 A VAL 173 n 185 VAL 173 A TYR 174 n 186 TYR 174 A SER 175 n 187 SER 175 A LYS 176 n 188 LYS 176 A LEU 177 n 189 LEU 177 A LYS 178 n 190 LYS 178 A TYR 179 n 191 TYR 179 A GLU 180 n 192 GLU 180 A SER 181 n 193 SER 181 A GLY 182 n 194 GLY 182 A ALA 183 n 195 ALA 183 A HIS 184 n 196 HIS 184 A ARG 185 n 197 ARG 185 A VAL 186 n 198 VAL 186 A GLN 187 n 199 GLN 187 A ARG 188 n 200 ARG 188 A VAL 189 n 201 VAL 189 A PRO 190 n 202 PRO 190 A VAL 191 n 203 VAL 191 A THR 192 n 204 THR 192 A GLU 193 n 205 GLU 193 A SER 194 n 206 SER 194 A GLN 195 n 207 GLN 195 A GLY 196 n 208 GLY 196 A ARG 197 n 209 ARG 197 A VAL 198 n 210 VAL 198 A HIS 199 n 211 HIS 199 A THR 200 n 212 THR 200 A SER 201 n 213 SER 201 A THR 202 n 214 THR 202 A ALA 203 n 215 ALA 203 A THR 204 n 216 THR 204 A VAL 205 n 217 VAL 205 A LEU 206 n 218 LEU 206 A VAL 207 n 219 VAL 207 A MSE 208 n 220 MSE 208 A PRO 209 n 221 PRO 209 A GLU 210 n 222 GLU 210 A VAL 211 n 223 VAL 211 A GLU 212 n 224 GLU 212 A GLU 213 n 225 GLU 213 A VAL 214 n 226 VAL 214 A GLU 215 n 227 GLU 215 A TYR 216 n 228 TYR 216 A GLU 217 n 229 GLU 217 A ILE 218 n 230 ILE 218 A ASP 219 n 231 ASP 219 A PRO 220 n 232 PRO 220 A LYS 221 n 233 LYS 221 A ASP 222 n 234 ASP 222 A LEU 223 n 235 LEU 223 A ARG 224 n 236 ARG 224 A VAL 225 n 237 VAL 225 A ASP 226 n 238 ASP 226 A ILE 227 n 239 ILE 227 A TYR 228 n 240 TYR 228 A HIS 229 n 241 HIS 229 A ALA 230 n 242 ALA 230 A n 243 231 A n 244 232 A n 245 233 A n 246 234 A n 247 235 A n 248 236 A n 249 237 A n 250 238 A n 251 239 A LYS 240 n 252 LYS 240 A VAL 241 n 253 VAL 241 A ALA 242 n 254 ALA 242 A THR 243 n 255 THR 243 A ALA 244 n 256 ALA 244 A VAL 245 n 257 VAL 245 A ARG 246 n 258 ARG 246 A ILE 247 n 259 ILE 247 A ILE 248 n 260 ILE 248 A HIS 249 n 261 HIS 249 A LEU 250 n 262 LEU 250 A PRO 251 n 263 PRO 251 A THR 252 n 264 THR 252 A ASN 253 n 265 ASN 253 A ILE 254 n 266 ILE 254 A LYS 255 n 267 LYS 255 A VAL 256 n 268 VAL 256 A GLU 257 n 269 GLU 257 A MSE 258 n 270 MSE 258 A GLN 259 n 271 GLN 259 A GLU 260 n 272 GLU 260 A GLU 261 n 273 GLU 261 A ARG 262 n 274 ARG 262 A THR 263 n 275 THR 263 A GLN 264 n 276 GLN 264 A GLN 265 n 277 GLN 265 A LYS 266 n 278 LYS 266 A ASN 267 n 279 ASN 267 A ARG 268 n 280 ARG 268 A ASP 269 n 281 ASP 269 A LYS 270 n 282 LYS 270 A ALA 271 n 283 ALA 271 A MSE 272 n 284 MSE 272 A LYS 273 n 285 LYS 273 A ILE 274 n 286 ILE 274 A ILE 275 n 287 ILE 275 A ARG 276 n 288 ARG 276 A ALA 277 n 289 ALA 277 A ARG 278 n 290 ARG 278 A VAL 279 n 291 VAL 279 A ALA 280 n 292 ALA 280 A ASP 281 n 293 ASP 281 A HIS 282 n 294 HIS 282 A PHE 283 n 295 PHE 283 A ALA 284 n 296 ALA 284 A GLN 285 n 297 GLN 285 A ILE 286 n 298 ILE 286 A ALA 287 n 299 ALA 287 A GLN 288 n 300 GLN 288 A ASP 289 n 301 ASP 289 A GLU 290 n 302 GLU 290 A GLN 291 n 303 GLN 291 A ASP 292 n 304 ASP 292 A ALA 293 n 305 ALA 293 A n 306 294 A n 307 295 A n 308 296 A n 309 297 A THR 298 n 310 THR 298 A VAL 299 n 311 VAL 299 A GLY 300 n 312 GLY 300 A THR 301 n 313 THR 301 A GLY 302 n 314 GLY 302 A ASP 303 n 315 ASP 303 A ARG 304 n 316 ARG 304 A SER 305 n 317 SER 305 A GLU 306 n 318 GLU 306 A ARG 307 n 319 ARG 307 A ILE 308 n 320 ILE 308 A ARG 309 n 321 ARG 309 A THR 310 n 322 THR 310 A TYR 311 n 323 TYR 311 A ASN 312 n 324 ASN 312 A PHE 313 n 325 PHE 313 A PRO 314 n 326 PRO 314 A GLN 315 n 327 GLN 315 A ASN 316 n 328 ASN 316 A ARG 317 n 329 ARG 317 A VAL 318 n 330 VAL 318 A THR 319 n 331 THR 319 A ASP 320 n 332 ASP 320 A HIS 321 n 333 HIS 321 A ARG 322 n 334 ARG 322 A ILE 323 n 335 ILE 323 A GLY 324 n 336 GLY 324 A LEU 325 n 337 LEU 325 A THR 326 n 338 THR 326 A LEU 327 n 339 LEU 327 A GLN 328 n 340 GLN 328 A LYS 329 n 341 LYS 329 A LEU 330 n 342 LEU 330 A ASP 331 n 343 ASP 331 A SER 332 n 344 SER 332 A ILE 333 n 345 ILE 333 A LEU 334 n 346 LEU 334 A SER 335 n 347 SER 335 A GLY 336 n 348 GLY 336 A LYS 337 n 349 LYS 337 A LEU 338 n 350 LEU 338 A ASP 339 n 351 ASP 339 A GLU 340 n 352 GLU 340 A VAL 341 n 353 VAL 341 A ILE 342 n 354 ILE 342 A ASP 343 n 355 ASP 343 A ALA 344 n 356 ALA 344 A LEU 345 n 357 LEU 345 A ILE 346 n 358 ILE 346 A LEU 347 n 359 LEU 347 A TYR 348 n 360 TYR 348 A ASP 349 n 361 ASP 349 A GLN 350 n 362 GLN 350 A THR 351 n 363 THR 351 A GLN 352 n 364 GLN 352 A LYS 353 n 365 LYS 353 A LEU 354 n 366 LEU 354 A GLU 355 n 367 GLU 355 A GLU 356 n 368 GLU 356 A LEU 357 n 369 LEU 357 A ASN 358 n 370 ASN 358 A n 371 359 A 3.6453 -3.0661 1.8500 4.9089 -4.5348 15.0597 0.1057 0.1355 -0.2483 -0.2464 -0.0724 0.0864 1.1578 0.2245 -0.0334 -0.0565 -0.0558 0.0866 0.3333 -0.1272 0.1853 refined 25.8679 40.0378 90.3676 X-RAY DIFFRACTION 2.2695 0.2705 2.3980 1.9056 0.2490 7.7041 0.1995 0.6711 -0.2114 -0.2614 0.0725 -0.1255 0.6626 0.5641 -0.2720 -0.1871 0.0236 0.0392 -0.2401 -0.0453 -0.1267 refined 58.0055 44.3855 74.9136 X-RAY DIFFRACTION 0.0516 0.1643 -0.1296 0.8362 1.1338 7.9665 -0.0038 0.1016 0.1187 -0.3090 0.0322 0.0805 -0.2882 -0.2367 -0.0283 -0.1891 -0.0452 0.0001 -0.1963 0.0038 -0.0186 refined 52.1119 48.4231 68.2666 X-RAY DIFFRACTION A 74 A 86 A 104 A 116 X-RAY DIFFRACTION 1 ALL A 105 A 117 A 210 A 222 X-RAY DIFFRACTION 2 ALL A 298 A 310 A 358 A 370 X-RAY DIFFRACTION 3 ALL author_defined_assembly 1 monomeric A MSE 1 SELENOMETHIONINE A MSE 13 MET A MSE 66 SELENOMETHIONINE A MSE 78 MET A MSE 79 SELENOMETHIONINE A MSE 91 MET A MSE 136 SELENOMETHIONINE A MSE 148 MET A MSE 151 SELENOMETHIONINE A MSE 163 MET A MSE 167 SELENOMETHIONINE A MSE 179 MET A MSE 208 SELENOMETHIONINE A MSE 220 MET A MSE 258 SELENOMETHIONINE A MSE 270 MET A MSE 272 SELENOMETHIONINE A MSE 284 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N SER 154 A N SER 166 A O GLU 163 A O GLU 175 A O ALA 166 A O ALA 178 A N LEU 115 A N LEU 127 A N ILE 114 A N ILE 126 A O MSE 208 A O MSE 220 A O SER 201 A O SER 213 A N VAL 186 A N VAL 198 A N ARG 185 A N ARG 197 A O ARG 309 A O ARG 321 A N THR 310 A N THR 322 A O THR 319 A O THR 331 A N VAL 318 A N VAL 330 A O LEU 327 A O LEU 339 A N ASP 226 A N ASP 238 A O ARG 246 A O ARG 258 A N HIS 249 A N HIS 261 A O ILE 254 A O ILE 266 1 A CG HIS -1 A CG HIS 11 1 Y 1 A ND1 HIS -1 A ND1 HIS 11 1 Y 1 A CD2 HIS -1 A CD2 HIS 11 1 Y 1 A CE1 HIS -1 A CE1 HIS 11 1 Y 1 A NE2 HIS -1 A NE2 HIS 11 1 Y 1 A CG ARG 13 A CG ARG 25 1 Y 1 A CD ARG 13 A CD ARG 25 1 Y 1 A NE ARG 13 A NE ARG 25 1 Y 1 A CZ ARG 13 A CZ ARG 25 1 Y 1 A NH1 ARG 13 A NH1 ARG 25 1 Y 1 A NH2 ARG 13 A NH2 ARG 25 1 Y 1 A CG ARG 38 A CG ARG 50 1 Y 1 A CD ARG 38 A CD ARG 50 1 Y 1 A NE ARG 38 A NE ARG 50 1 Y 1 A CZ ARG 38 A CZ ARG 50 1 Y 1 A NH1 ARG 38 A NH1 ARG 50 1 Y 1 A NH2 ARG 38 A NH2 ARG 50 1 Y 1 A CG GLU 39 A CG GLU 51 1 Y 1 A CD GLU 39 A CD GLU 51 1 Y 1 A OE1 GLU 39 A OE1 GLU 51 1 Y 1 A OE2 GLU 39 A OE2 GLU 51 1 Y 1 A CG GLU 40 A CG GLU 52 1 Y 1 A CD GLU 40 A CD GLU 52 1 Y 1 A OE1 GLU 40 A OE1 GLU 52 1 Y 1 A OE2 GLU 40 A OE2 GLU 52 1 Y 1 A CG ARG 44 A CG ARG 56 1 Y 1 A CD ARG 44 A CD ARG 56 1 Y 1 A NE ARG 44 A NE ARG 56 1 Y 1 A CZ ARG 44 A CZ ARG 56 1 Y 1 A NH1 ARG 44 A NH1 ARG 56 1 Y 1 A NH2 ARG 44 A NH2 ARG 56 1 Y 1 A CG GLU 45 A CG GLU 57 1 Y 1 A CD GLU 45 A CD GLU 57 1 Y 1 A OE1 GLU 45 A OE1 GLU 57 1 Y 1 A OE2 GLU 45 A OE2 GLU 57 1 Y 1 A CG GLU 65 A CG GLU 77 1 Y 1 A CD GLU 65 A CD GLU 77 1 Y 1 A OE1 GLU 65 A OE1 GLU 77 1 Y 1 A OE2 GLU 65 A OE2 GLU 77 1 Y 1 A CG MSE 66 A CG MSE 78 1 Y 1 A SE MSE 66 A SE MSE 78 1 Y 1 A CE MSE 66 A CE MSE 78 1 Y 1 A CG GLU 75 A CG GLU 87 1 Y 1 A CD GLU 75 A CD GLU 87 1 Y 1 A OE1 GLU 75 A OE1 GLU 87 1 Y 1 A OE2 GLU 75 A OE2 GLU 87 1 Y 1 A CG GLU 77 A CG GLU 89 1 Y 1 A CD GLU 77 A CD GLU 89 1 Y 1 A OE1 GLU 77 A OE1 GLU 89 1 Y 1 A OE2 GLU 77 A OE2 GLU 89 1 Y 1 A CG LYS 81 A CG LYS 93 1 Y 1 A CD LYS 81 A CD LYS 93 1 Y 1 A CE LYS 81 A CE LYS 93 1 Y 1 A NZ LYS 81 A NZ LYS 93 1 Y 1 A CG LYS 85 A CG LYS 97 1 Y 1 A CD LYS 85 A CD LYS 97 1 Y 1 A CE LYS 85 A CE LYS 97 1 Y 1 A NZ LYS 85 A NZ LYS 97 1 Y 1 A CG GLU 92 A CG GLU 104 1 Y 1 A CD GLU 92 A CD GLU 104 1 Y 1 A OE1 GLU 92 A OE1 GLU 104 1 Y 1 A OE2 GLU 92 A OE2 GLU 104 1 Y 1 A NE ARG 99 A NE ARG 111 1 Y 1 A CZ ARG 99 A CZ ARG 111 1 Y 1 A NH1 ARG 99 A NH1 ARG 111 1 Y 1 A NH2 ARG 99 A NH2 ARG 111 1 Y 1 A CD GLU 142 A CD GLU 154 1 Y 1 A OE1 GLU 142 A OE1 GLU 154 1 Y 1 A OE2 GLU 142 A OE2 GLU 154 1 Y 1 A CE LYS 162 A CE LYS 174 1 Y 1 A NZ LYS 162 A NZ LYS 174 1 Y 1 A CG GLN 171 A CG GLN 183 1 Y 1 A CD GLN 171 A CD GLN 183 1 Y 1 A OE1 GLN 171 A OE1 GLN 183 1 Y 1 A NE2 GLN 171 A NE2 GLN 183 1 Y 1 A CG LYS 266 A CG LYS 278 1 Y 1 A CD LYS 266 A CD LYS 278 1 Y 1 A CE LYS 266 A CE LYS 278 1 Y 1 A NZ LYS 266 A NZ LYS 278 1 Y 1 A OG1 THR 298 A OG1 THR 310 1 Y 1 A CG2 THR 298 A CG2 THR 310 1 Y 1 A CG GLU 306 A CG GLU 318 1 Y 1 A CD GLU 306 A CD GLU 318 1 Y 1 A OE1 GLU 306 A OE1 GLU 318 1 Y 1 A OE2 GLU 306 A OE2 GLU 318 1 Y 1 A MET -11 A MET 1 1 Y 1 A GLY -10 A GLY 2 1 Y 1 A SER -9 A SER 3 1 Y 1 A ASP -8 A ASP 4 1 Y 1 A LYS -7 A LYS 5 1 Y 1 A ILE -6 A ILE 6 1 Y 1 A HIS -5 A HIS 7 1 Y 1 A HIS -4 A HIS 8 1 Y 1 A HIS -3 A HIS 9 1 Y 1 A HIS -2 A HIS 10 1 Y 1 A GLY 18 A GLY 30 1 Y 1 A GLU 19 A GLU 31 1 Y 1 A LEU 20 A LEU 32 1 Y 1 A LEU 21 A LEU 33 1 Y 1 A SER 22 A SER 34 1 Y 1 A ASP 23 A ASP 35 1 Y 1 A PRO 24 A PRO 36 1 Y 1 A ASP 25 A ASP 37 1 Y 1 A VAL 26 A VAL 38 1 Y 1 A VAL 27 A VAL 39 1 Y 1 A SER 28 A SER 40 1 Y 1 A ASP 29 A ASP 41 1 Y 1 A THR 30 A THR 42 1 Y 1 A LYS 31 A LYS 43 1 Y 1 A ARG 32 A ARG 44 1 Y 1 A PHE 33 A PHE 45 1 Y 1 A MSE 34 A MSE 46 1 Y 1 A GLU 35 A GLU 47 1 Y 1 A LEU 36 A LEU 48 1 Y 1 A SER 37 A SER 49 1 Y 1 A ILE 67 A ILE 79 1 Y 1 A LYS 68 A LYS 80 1 Y 1 A ASP 69 A ASP 81 1 Y 1 A ALA 70 A ALA 82 1 Y 1 A SER 71 A SER 83 1 Y 1 A GLY 72 A GLY 84 1 Y 1 A ASP 73 A ASP 85 1 Y 1 A SER 231 A SER 243 1 Y 1 A GLY 232 A GLY 244 1 Y 1 A ALA 233 A ALA 245 1 Y 1 A GLY 234 A GLY 246 1 Y 1 A GLY 235 A GLY 247 1 Y 1 A GLN 236 A GLN 248 1 Y 1 A ASN 237 A ASN 249 1 Y 1 A VAL 238 A VAL 250 1 Y 1 A ASN 239 A ASN 251 1 Y 1 A GLU 294 A GLU 306 1 Y 1 A ARG 295 A ARG 307 1 Y 1 A LYS 296 A LYS 308 1 Y 1 A SER 297 A SER 309 1 Y 1 A LYS 359 A LYS 371 1 Y 1 A ARG 44 -29.62 -58.88 1 A ALA 120 -103.48 -115.45 1 A VAL 158 -152.92 37.88 1 A SER 172 37.41 54.43 1 A LYS 329 -142.11 21.17 1 A LEU 357 -84.20 48.17 51.292 2.180 0.000 0.000 2.180 0.000 -4.360 0.940 0.903 OTHER REFINEMENT REMARKS: 1). HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 2). ELECTRON DENSITY FOR PORTIONS OF THE N-TERMINAL DOMAIN IS QUITE POOR; THEREFORE, SEVERAL RESIDUES IN THIS REGION COULD NOT BE MODELED. 3). ELECTRON DENSITIES FOR TWO SURFACE LOOPS BETWEEN RESIDUES 231-239 AND RESIDUES 294-297 ARE POOR. CONSEQUENTLY, THESE LOOPS WERE NOT MODELED. 0.275 0.221 0.223 0.22326 2.340 28.58 1033 19101 5.100 99.270 18.297 0.203 RANDOM LIKELY RESIDUAL 1 THROUGHOUT MAD 0.282 0.240 0.800 0.800 1.200 MAXIMUM LIKELIHOOD WITH PHASES BABINET MODEL WITH MASK 2.340 28.58 61 2547 0 0 2486 0.013 0.022 2516 0.002 0.020 2287 1.255 1.960 3398 0.740 3.000 5301 6.109 5.000 315 33.180 25.360 125 16.843 15.000 447 20.346 15.000 16 0.068 0.200 390 0.003 0.020 2815 0.001 0.020 468 0.206 0.200 540 0.173 0.200 2405 0.175 0.200 1236 0.084 0.200 1633 0.114 0.200 79 0.172 0.200 7 0.162 0.200 46 0.114 0.200 9 1.650 3.000 1650 0.315 3.000 649 2.592 5.000 2536 4.814 8.000 988 6.639 11.000 862 0.363 0.3 2.401 70 1379 20 99.380 2.34 28.58 1ZBT 20155 0.088 1 8.100 3.500 99.600 2.34 2.47 1.300 2891 0.583 1 3.500 99.800 2.47 2.62 1.700 2722 0.463 1 3.600 100.000 2.62 2.80 2.400 2593 0.321 1 3.500 99.900 2.80 3.02 3.400 2424 0.227 1 3.500 100.000 3.02 3.31 5.500 2243 0.14 1 3.500 99.900 3.31 3.70 9.600 2019 0.079 1 3.500 99.700 3.70 4.27 13.800 1819 0.05 1 3.500 99.700 4.27 5.23 17.500 1532 0.039 1 3.500 99.200 5.23 7.40 15.700 1216 0.045 1 3.400 98.300 7.40 28.58 22.400 696 0.027 1 3.100 94.600 refinement Murshudov, G.N. ccp4@dl.ac.uk Fortran http://www.ccp4.ac.uk/main.html REFMAC program 5.2.0005 data scaling Phil Evans pre@mrc-lmb.cam.ac.uk Fortran http://www.ccp4.ac.uk/dist/html/INDEX.html SCALA program data extraction PDB sw-help@rcsb.rutgers.edu Jan. 30, 2005 C++ http://pdb.rutgers.edu/software/ PDB_EXTRACT package 1.600 data reduction XDS data scaling CCP4 (SCALA) phasing SHARP Crystal structure of Peptide chain release factor 1 (RF-1) (SMU.1085) from Streptococcus mutans at 2.34 A resolution 1 N N 2 N N A ASN 2 A ASN 14 HELX_P A LEU 17 A LEU 29 1 1 16 A GLU 39 A GLU 51 HELX_P A MSE 66 A MSE 78 1 2 28 A PRO 74 A PRO 86 HELX_P A PHE 100 A PHE 112 1 3 27 A GLY 123 A GLY 135 HELX_P A GLY 145 A GLY 157 1 4 23 A SER 172 A SER 184 HELX_P A LYS 178 A LYS 190 1 5 7 A TYR 179 A TYR 191 HELX_P A SER 181 A SER 193 5 6 3 A GLU 212 A GLU 224 HELX_P A TYR 216 A TYR 228 5 7 5 A ASP 219 A ASP 231 HELX_P A LYS 221 A LYS 233 5 8 3 A THR 263 A THR 275 HELX_P A GLN 291 A GLN 303 1 9 29 A LYS 329 A LYS 341 HELX_P A SER 335 A SER 347 1 10 7 A LEU 338 A LEU 350 HELX_P A LEU 357 A LEU 369 1 11 20 covale 1.329 both A HIS 0 A C HIS 12 1_555 A MSE 1 A N MSE 13 1_555 covale 1.327 both A MSE 1 A C MSE 13 1_555 A ASN 2 A N ASN 14 1_555 covale 1.337 both A GLU 65 A C GLU 77 1_555 A MSE 66 A N MSE 78 1_555 covale 1.332 both A GLU 78 A C GLU 90 1_555 A MSE 79 A N MSE 91 1_555 covale 1.331 both A MSE 79 A C MSE 91 1_555 A ALA 80 A N ALA 92 1_555 covale 1.328 both A ASN 135 A C ASN 147 1_555 A MSE 136 A N MSE 148 1_555 covale 1.323 both A MSE 136 A C MSE 148 1_555 A TYR 137 A N TYR 149 1_555 covale 1.324 both A VAL 150 A C VAL 162 1_555 A MSE 151 A N MSE 163 1_555 covale 1.322 both A MSE 151 A C MSE 163 1_555 A GLU 152 A N GLU 164 1_555 covale 1.320 both A ALA 166 A C ALA 178 1_555 A MSE 167 A N MSE 179 1_555 covale 1.336 both A MSE 167 A C MSE 179 1_555 A VAL 168 A N VAL 180 1_555 covale 1.325 both A VAL 207 A C VAL 219 1_555 A MSE 208 A N MSE 220 1_555 covale 1.345 both A MSE 208 A C MSE 220 1_555 A PRO 209 A N PRO 221 1_555 covale 1.323 both A GLU 257 A C GLU 269 1_555 A MSE 258 A N MSE 270 1_555 covale 1.327 both A MSE 258 A C MSE 270 1_555 A GLN 259 A N GLN 271 1_555 covale 1.324 both A ALA 271 A C ALA 283 1_555 A MSE 272 A N MSE 284 1_555 covale 1.339 both A MSE 272 A C MSE 284 1_555 A LYS 273 A N LYS 285 1_555 TRANSLATION SMU.1085, Peptide chain release factor 1 (RF-1), Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI, TRANSLATION RF1_STRMU UNP 1 1 Q8DU64 MNIYDQLQAVEDRYEELGELLSDPDVVSDTKRFMELSREEANSRETVAVYREYKQVVQNIADAQEMIKDASGDPELEEMA KEELKNSKVAKEEYEEKLRFLLLPKDPNDDKNIILEIRGAAGGDEAALFAGDLLNMYQKYAENQGWKFEVMEASANGVGG LKEVVAMVSGQSVYSKLKYESGAHRVQRVPVTESQGRVHTSTATVLVMPEVEEVEYEIDPKDLRVDIYHASGAGGQNVNK VATAVRIIHLPTNIKVEMQEERTQQKNRDKAMKIIRARVADHFAQIAQDEQDAERKSTVGTGDRSERIRTYNFPQNRVTD HRIGLTLQKLDSILSGKLDEVIDALILYDQTQKLEELNK 1 359 1ZBT 1 359 Q8DU64 A 1 13 371 1 expression tag MET -11 1ZBT A Q8DU64 UNP 1 1 expression tag GLY -10 1ZBT A Q8DU64 UNP 2 1 expression tag SER -9 1ZBT A Q8DU64 UNP 3 1 expression tag ASP -8 1ZBT A Q8DU64 UNP 4 1 expression tag LYS -7 1ZBT A Q8DU64 UNP 5 1 expression tag ILE -6 1ZBT A Q8DU64 UNP 6 1 expression tag HIS -5 1ZBT A Q8DU64 UNP 7 1 expression tag HIS -4 1ZBT A Q8DU64 UNP 8 1 expression tag HIS -3 1ZBT A Q8DU64 UNP 9 1 expression tag HIS -2 1ZBT A Q8DU64 UNP 10 1 expression tag HIS -1 1ZBT A Q8DU64 UNP 11 1 expression tag HIS 0 1ZBT A Q8DU64 UNP 12 1 MET modified residue MSE 1 1ZBT A Q8DU64 UNP 1 13 1 MET modified residue MSE 34 1ZBT A Q8DU64 UNP 34 46 1 MET modified residue MSE 66 1ZBT A Q8DU64 UNP 66 78 1 MET modified residue MSE 79 1ZBT A Q8DU64 UNP 79 91 1 MET modified residue MSE 136 1ZBT A Q8DU64 UNP 136 148 1 MET modified residue MSE 151 1ZBT A Q8DU64 UNP 151 163 1 MET modified residue MSE 167 1ZBT A Q8DU64 UNP 167 179 1 MET modified residue MSE 208 1ZBT A Q8DU64 UNP 208 220 1 MET modified residue MSE 258 1ZBT A Q8DU64 UNP 258 270 1 MET modified residue MSE 272 1ZBT A Q8DU64 UNP 272 284 8 3 anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel A LYS 147 A LYS 159 A ALA 155 A ALA 167 A LEU 161 A LEU 173 A SER 169 A SER 181 A ILE 113 A ILE 125 A GLY 119 A GLY 131 A HIS 199 A HIS 211 A PRO 209 A PRO 221 A GLY 182 A GLY 194 A ARG 188 A ARG 200 A ARG 307 A ARG 319 A ASN 312 A ASN 324 A ARG 317 A ARG 329 A ASP 320 A ASP 332 A LEU 325 A LEU 337 A LEU 327 A LEU 339 A LEU 223 A LEU 235 A TYR 228 A TYR 240 A ALA 244 A ALA 256 A HIS 249 A HIS 261 A ILE 254 A ILE 266 A MSE 258 A MSE 270 96 P 43 21 2