0.014038
0.000000
0.000000
0.000000
0.014038
0.000000
0.000000
0.000000
0.006901
0.00000
0.00000
0.00000
Brown, M.A.
Zhao, Q.
Baker, K.A.
Naik, C.
Chen, C.
Pukac, L.
Singh, M.
Tsareva, T.
Parice, Y.
Mahoney, A.
Roschke, V.
Sanyal, I.
Choe, S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.00
90.00
90.00
71.234
71.234
144.897
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
R
C
N
309
N
O
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
N
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
N
359
N
O
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
N
C
N
377
N
C
N
378
N
C
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
280
25111
25118
10.1074/jbc.M503328200
15851468
Crystal structure of BMP-9 and functional interactions with pro-region and receptors
2005
10.2210/pdb1zkz/pdb
pdb_00001zkz
100
1
CCD
2004-05-21
ADSC QUANTUM 315
double crystal
SINGLE WAVELENGTH
M
x-ray
1
1.0000
1.0
BL9-2
SSRL
1.0000
SYNCHROTRON
SSRL BEAMLINE BL9-2
12102.971
Growth/differentiation factor 2
Growth/differentiation factor 2, residues 320-429
1
man
polymer
18.015
water
40
nat
water
GDF-2, Bone morphogenetic protein 9, BMP-9
no
no
SAGAGSHCQKTSLRVNFEDIGWDSWIIAPKEYEAYECKGGCFFPLADDVTPTKHAIVQTLVHLKFPTKVGKACCVPTKLS
PISVLYKDDMGVPTLKYHYEGMSVAECGCR
SAGAGSHCQKTSLRVNFEDIGWDSWIIAPKEYEAYECKGGCFFPLADDVTPTKHAIVQTLVHLKFPTKVGKACCVPTKLS
PISVLYKDDMGVPTLKYHYEGMSVAECGCR
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Chinese hamster
Cricetulus
sample
GDF2, BMP9
9606
Homo sapiens
10029
Cricetulus griseus
CHO-DG44
ovary cells
PLASMID
pC4
1
3.8
67.6
VAPOR DIFFUSION, HANGING DROP
7.5
1-1.2 M Sodium Chloride, 7-10 mM Hexadecyltrimethylammonium Bromide 10 mM Magnesium Chloride, pH 7.5, temperature 296K, VAPOR DIFFUSION, HANGING DROP
296
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Refinement description
Data collection
Database references
Refinement description
1
0
2005-05-24
1
1
2008-04-01
1
2
2011-07-13
1
3
2017-10-11
1
4
2023-08-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
RCSB
Y
RCSB
2005-05-04
REL
REL
HOH
water
3BMP
PDB ENTRY 3BMP
PDB
experimental model
HOH
112
2
HOH
HOH
112
A
HOH
113
2
HOH
HOH
113
A
HOH
114
2
HOH
HOH
114
A
HOH
115
2
HOH
HOH
115
A
HOH
116
2
HOH
HOH
116
A
HOH
117
2
HOH
HOH
117
A
HOH
118
2
HOH
HOH
118
A
HOH
119
2
HOH
HOH
119
A
HOH
120
2
HOH
HOH
120
A
HOH
121
2
HOH
HOH
121
A
HOH
122
2
HOH
HOH
122
A
HOH
123
2
HOH
HOH
123
A
HOH
124
2
HOH
HOH
124
A
HOH
125
2
HOH
HOH
125
A
HOH
126
2
HOH
HOH
126
A
HOH
127
2
HOH
HOH
127
A
HOH
128
2
HOH
HOH
128
A
HOH
129
2
HOH
HOH
129
A
HOH
130
2
HOH
HOH
130
A
HOH
131
2
HOH
HOH
131
A
HOH
132
2
HOH
HOH
132
A
HOH
133
2
HOH
HOH
133
A
HOH
134
2
HOH
HOH
134
A
HOH
135
2
HOH
HOH
135
A
HOH
136
2
HOH
HOH
136
A
HOH
137
2
HOH
HOH
137
A
HOH
138
2
HOH
HOH
138
A
HOH
139
2
HOH
HOH
139
A
HOH
140
2
HOH
HOH
140
A
HOH
141
2
HOH
HOH
141
A
HOH
142
2
HOH
HOH
142
A
HOH
143
2
HOH
HOH
143
A
HOH
144
2
HOH
HOH
144
A
HOH
145
2
HOH
HOH
145
A
HOH
146
2
HOH
HOH
146
A
HOH
147
2
HOH
HOH
147
A
HOH
148
2
HOH
HOH
148
A
HOH
149
2
HOH
HOH
149
A
HOH
150
2
HOH
HOH
150
A
HOH
151
2
HOH
HOH
151
A
2.500
25.152
n
1
1
A
n
2
2
A
n
3
3
A
ALA
4
n
4
ALA
4
A
GLY
5
n
5
GLY
5
A
SER
6
n
6
SER
6
A
HIS
7
n
7
HIS
7
A
CYS
8
n
8
CYS
8
A
GLN
9
n
9
GLN
9
A
LYS
10
n
10
LYS
10
A
THR
11
n
11
THR
11
A
SER
12
n
12
SER
12
A
LEU
13
n
13
LEU
13
A
ARG
14
n
14
ARG
14
A
VAL
15
n
15
VAL
15
A
ASN
16
n
16
ASN
16
A
PHE
17
n
17
PHE
17
A
GLU
18
n
18
GLU
18
A
ASP
19
n
19
ASP
19
A
ILE
20
n
20
ILE
20
A
GLY
21
n
21
GLY
21
A
TRP
22
n
22
TRP
22
A
ASP
23
n
23
ASP
23
A
SER
24
n
24
SER
24
A
TRP
25
n
25
TRP
25
A
ILE
26
n
26
ILE
26
A
ILE
27
n
27
ILE
27
A
ALA
28
n
28
ALA
28
A
PRO
29
n
29
PRO
29
A
LYS
30
n
30
LYS
30
A
GLU
31
n
31
GLU
31
A
TYR
32
n
32
TYR
32
A
GLU
33
n
33
GLU
33
A
ALA
34
n
34
ALA
34
A
TYR
35
n
35
TYR
35
A
GLU
36
n
36
GLU
36
A
CYS
37
n
37
CYS
37
A
LYS
38
n
38
LYS
38
A
GLY
39
n
39
GLY
39
A
GLY
40
n
40
GLY
40
A
CYS
41
n
41
CYS
41
A
PHE
42
n
42
PHE
42
A
PHE
43
n
43
PHE
43
A
PRO
44
n
44
PRO
44
A
LEU
45
n
45
LEU
45
A
ALA
46
n
46
ALA
46
A
ASP
47
n
47
ASP
47
A
ASP
48
n
48
ASP
48
A
VAL
49
n
49
VAL
49
A
THR
50
n
50
THR
50
A
PRO
51
n
51
PRO
51
A
THR
52
n
52
THR
52
A
LYS
53
n
53
LYS
53
A
HIS
54
n
54
HIS
54
A
ALA
55
n
55
ALA
55
A
ILE
56
n
56
ILE
56
A
VAL
57
n
57
VAL
57
A
GLN
58
n
58
GLN
58
A
THR
59
n
59
THR
59
A
LEU
60
n
60
LEU
60
A
VAL
61
n
61
VAL
61
A
HIS
62
n
62
HIS
62
A
LEU
63
n
63
LEU
63
A
LYS
64
n
64
LYS
64
A
PHE
65
n
65
PHE
65
A
PRO
66
n
66
PRO
66
A
THR
67
n
67
THR
67
A
LYS
68
n
68
LYS
68
A
VAL
69
n
69
VAL
69
A
GLY
70
n
70
GLY
70
A
LYS
71
n
71
LYS
71
A
ALA
72
n
72
ALA
72
A
CYS
73
n
73
CYS
73
A
CYS
74
n
74
CYS
74
A
VAL
75
n
75
VAL
75
A
PRO
76
n
76
PRO
76
A
THR
77
n
77
THR
77
A
LYS
78
n
78
LYS
78
A
LEU
79
n
79
LEU
79
A
SER
80
n
80
SER
80
A
PRO
81
n
81
PRO
81
A
ILE
82
n
82
ILE
82
A
SER
83
n
83
SER
83
A
VAL
84
n
84
VAL
84
A
LEU
85
n
85
LEU
85
A
TYR
86
n
86
TYR
86
A
LYS
87
n
87
LYS
87
A
ASP
88
n
88
ASP
88
A
ASP
89
n
89
ASP
89
A
MET
90
n
90
MET
90
A
GLY
91
n
91
GLY
91
A
VAL
92
n
92
VAL
92
A
PRO
93
n
93
PRO
93
A
THR
94
n
94
THR
94
A
LEU
95
n
95
LEU
95
A
LYS
96
n
96
LYS
96
A
TYR
97
n
97
TYR
97
A
HIS
98
n
98
HIS
98
A
TYR
99
n
99
TYR
99
A
GLU
100
n
100
GLU
100
A
GLY
101
n
101
GLY
101
A
MET
102
n
102
MET
102
A
SER
103
n
103
SER
103
A
VAL
104
n
104
VAL
104
A
ALA
105
n
105
ALA
105
A
GLU
106
n
106
GLU
106
A
CYS
107
n
107
CYS
107
A
GLY
108
n
108
GLY
108
A
CYS
109
n
109
CYS
109
A
ARG
110
n
110
ARG
110
A
0.0000
0.0000
0.0000
0.0000
0.0000
0.0000
0.0000
0.0000
0.0000
0.0000
0.0000
0.0000
0.0000
0.0000
0.0000
0.0000
0.0000
0.0000
refined
4.5969
13.2237
-31.0303745
X-RAY DIFFRACTION
0.0000
0.0000
0.0000
0.0000
0.0000
0.0000
0.0000
0.0000
0.0000
0.0000
0.0000
0.0000
0.0000
0.0000
0.0000
0.0000
0.0000
0.0000
refined
12.2603
12.9723
-10.0131
X-RAY DIFFRACTION
0.0000
0.0000
0.0000
0.0000
0.0000
0.0000
0.0000
0.0000
0.0000
0.0000
0.0000
0.0000
0.0000
0.0000
0.0000
0.0000
0.0000
0.0000
refined
21.5955
17.8092
-9.5500
X-RAY DIFFRACTION
0.0000
0.0000
0.0000
0.0000
0.0000
0.0000
0.0000
0.0000
0.0000
0.0000
0.0000
0.0000
0.0000
0.0000
0.0000
0.0000
0.0000
0.0000
refined
6.9016
1.7012
-35.5279
X-RAY DIFFRACTION
A
4
A
4
A
34
A
34
X-RAY DIFFRACTION
1
A
35
A
35
A
54
A
54
X-RAY DIFFRACTION
2
A
55
A
55
A
78
A
78
X-RAY DIFFRACTION
3
A
79
A
79
A
108
A
108
X-RAY DIFFRACTION
4
author_and_software_defined_assembly
PISA,PQS
2
dimeric
2650
-19
11790
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
5_554
-x+1/2,y,-z-1/4
crystal symmetry operation
35.6170000000
0.0000000000
-36.2242500000
A
N
VAL
15
A
N
VAL
15
A
O
TYR
32
A
O
TYR
32
A
N
ALA
28
A
N
ALA
28
A
O
LEU
85
A
O
LEU
85
A
N
TYR
86
A
N
TYR
86
A
O
THR
94
A
O
THR
94
1
A
SER
1
A
SER
1
1
Y
1
A
ALA
2
A
ALA
2
1
Y
1
A
GLY
3
A
GLY
3
1
Y
1
A
THR
50
-34.46
1
A
A
THR
PRO
50
51
-129.81
1
-17.60
2.50
121.70
104.10
A
A
A
C
N
CA
ALA
TYR
TYR
34
35
35
Y
1
-25.89
1.90
121.10
95.21
A
A
A
O
C
N
THR
THR
PRO
50
50
51
Y
1
A
A
C
N
THR
PRO
50
51
0.246
0.019
1.338
1.584
Y
1
A
A
O
O
HOH
HOH
150
150
2.07
1_555
15_555
1
A
THR
50
102.18
-23.80
1
A
PRO
51
-44.21
151.27
63.434
-0.45
0.00
0.00
-0.45
0.00
0.91
0.935
0.904
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.27181
0.23074
0.23254
2.33
23.8
392
8346
7954
4.7
99.52
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.801
0.213
0.80
0.80
1.20
PDB ENTRY 3BMP
MAXIMUM LIKELIHOOD
MASK
2.33
23.8
40
871
0
0
831
0.017
0.022
857
1.866
1.962
1165
9.234
5.000
106
34.911
24.062
32
17.338
15.000
143
10.867
15.000
2
0.103
0.200
127
0.020
0.020
638
0.222
0.200
329
0.306
0.200
565
0.143
0.200
39
0.173
0.200
38
0.366
0.200
5
2.465
1.500
534
4.403
2.000
866
3.060
3.000
323
4.439
4.500
299
0.303
0.239
2.387
25
574
20
96.77
2.32
23.8
1ZKZ
8346
8142
0.077
1
13.500
0.357
2.32
2.40
1
11.300
0.328
2.40
2.50
1
12.700
0.27
2.50
2.61
1
13.700
0.192
2.61
2.75
1
14.100
0.145
2.75
2.92
1
14.300
0.099
2.92
3.15
1
14.200
0.082
3.15
3.47
1
14.200
0.08
3.47
3.97
1
13.900
0.07
3.97
5.00
1
13.500
0.045
5.00
50.00
1
12.600
data reduction
Zbyszek Otwinowski
zbyszek@mix.swmed.edu
http://www.lnls.br/infra/linhasluz/denzo-hkl.htm
DENZO
package
data scaling
Zbyszek Otwinowski
zbyszek@mix.swmed.edu
http://www.lnls.br/infra/linhasluz/denzo-hkl.htm
SCALEPACK
package
phasing
R. J. Read
cimr-phaser@lists.cam.ac.uk
http://www-structmed.cimr.cam.ac.uk/phaser/
PHASER
program
refinement
Murshudov, G.N.
ccp4@dl.ac.uk
Fortran
http://www.ccp4.ac.uk/main.html
REFMAC
program
5.2.0005
data extraction
PDB
sw-help@rcsb.rutgers.edu
Jan. 30, 2005
C++
http://pdb.rutgers.edu/software/
PDB_EXTRACT
package
1.600
data reduction
HKL-2000
data scaling
CCP4
(TRUNCATE)
Crystal Structure of BMP9
1
N
N
2
N
N
The biological assembly is a homodimer.
A
THR
52
A
THR
52
HELX_P
A
PHE
65
A
PHE
65
1
1
14
disulf
2.067
A
CYS
8
A
SG
CYS
8
1_555
A
CYS
74
A
SG
CYS
74
1_555
disulf
2.060
A
CYS
37
A
SG
CYS
37
1_555
A
CYS
107
A
SG
CYS
107
1_555
disulf
2.038
A
CYS
41
A
SG
CYS
41
1_555
A
CYS
109
A
SG
CYS
109
1_555
HORMONE/GROWTH FACTOR
glycoprotein, growth factor, cytokine, HORMONE-GROWTH FACTOR COMPLEX
A
ALA
28
A
ALA
28
1
A
PRO
29
A
PRO
29
-4.47
A
PHE
43
A
PHE
43
1
A
PRO
44
A
PRO
44
-3.11
GDF2_HUMAN
UNP
1
320
Q9UK05
SAGAGSHCQKTSLRVNFEDIGWDSWIIAPKEYEAYECKGGCFFPLADDVTPTKHAIVQTLVHLKFPTKVGKACCVPTKLS
PISVLYKDDMGVPTLKYHYEGMSVAECGCR
320
429
1ZKZ
1
110
Q9UK05
A
1
1
110
2
3
anti-parallel
anti-parallel
anti-parallel
A
GLN
9
A
GLN
9
A
ASN
16
A
ASN
16
A
GLU
31
A
GLU
31
A
LYS
38
A
LYS
38
A
ILE
26
A
ILE
26
A
ALA
28
A
ALA
28
A
CYS
74
A
CYS
74
A
LYS
87
A
LYS
87
A
PRO
93
A
PRO
93
A
CYS
109
A
CYS
109
98
I 41 2 2