0.007023
0.000000
0.005009
0.000000
0.017009
0.000000
0.000000
0.000000
0.014811
0.00000
0.00000
0.00000
Wisedchaisri, G.
Wu, M.
Rice, A.E.
Roberts, D.M.
Sherman, D.R.
Hol, W.G.J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
125.50
90.00
142.397
58.791
82.933
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
O
N
75
N
P
N
76
N
O
N
77
N
O
N
78
N
O
N
79
N
C
N
80
R
C
N
81
N
O
N
82
S
C
N
83
N
O
N
84
N
C
N
85
R
C
Y
86
N
N
Y
87
N
C
Y
88
N
N
Y
89
N
C
Y
90
N
C
N
91
N
N
Y
92
N
N
Y
93
N
C
Y
94
N
N
Y
95
N
C
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
O
N
111
N
P
N
112
N
O
N
113
N
O
N
114
N
O
N
115
N
C
N
116
R
C
N
117
N
O
N
118
S
C
N
119
N
O
N
120
N
C
N
121
R
C
N
122
N
N
N
123
N
C
N
124
N
O
N
125
N
N
N
126
N
C
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
O
N
145
N
P
N
146
N
O
N
147
N
O
N
148
N
O
N
149
N
C
N
150
R
C
N
151
N
O
N
152
S
C
N
153
N
O
N
154
N
C
N
155
R
C
Y
156
N
N
Y
157
N
C
Y
158
N
N
Y
159
N
C
N
160
N
C
N
161
N
O
N
162
N
N
N
163
N
C
N
164
N
N
N
165
N
N
Y
166
N
C
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
O
N
182
N
P
N
183
N
O
N
184
N
O
N
185
N
O
N
186
N
C
N
187
R
C
N
188
N
O
N
189
S
C
N
190
N
O
N
191
N
C
N
192
R
C
N
193
N
N
N
194
N
C
N
195
N
O
N
196
N
N
N
197
N
C
N
198
N
O
N
199
N
C
N
200
N
C
N
201
N
C
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
N
N
218
S
C
N
219
N
C
N
220
N
O
N
221
N
C
N
222
N
C
N
223
N
C
N
224
N
O
N
225
N
N
N
226
N
O
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
N
N
238
S
C
N
239
N
C
N
240
N
O
N
241
N
C
N
242
N
C
N
243
N
C
N
244
N
O
N
245
N
O
N
246
N
O
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
N
N
257
N
C
N
258
N
C
N
259
N
O
N
260
N
O
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
N
N
267
S
C
N
268
N
C
N
269
N
O
N
270
N
C
Y
271
N
C
Y
272
N
N
Y
273
N
C
Y
274
N
C
Y
275
N
N
N
276
N
O
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
N
N
288
S
C
N
289
N
C
N
290
N
O
N
291
S
C
N
292
N
C
N
293
N
C
N
294
N
C
N
295
N
O
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
N
N
310
S
C
N
311
N
C
N
312
N
O
N
313
N
C
N
314
N
C
N
315
N
C
N
316
N
C
N
317
N
O
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
N
N
332
S
C
N
333
N
C
N
334
N
O
N
335
N
C
N
336
N
C
N
337
N
C
N
338
N
C
N
339
N
N
N
340
N
O
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
N
N
357
S
C
N
358
N
C
N
359
N
O
N
360
N
C
N
361
N
C
N
362
N
S
N
363
N
C
N
364
N
O
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
N
N
377
S
C
N
378
N
C
N
379
N
O
N
380
N
C
Y
381
N
C
Y
382
N
C
Y
383
N
C
Y
384
N
C
Y
385
N
C
Y
386
N
C
N
387
N
O
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
N
N
400
S
C
N
401
N
C
N
402
N
O
N
403
N
C
N
404
N
C
N
405
N
C
N
406
N
O
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
N
N
417
S
C
N
418
N
C
N
419
N
O
N
420
N
C
N
421
N
O
N
422
N
O
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
N
N
431
S
C
N
432
N
C
N
433
N
O
N
434
R
C
N
435
N
O
N
436
N
C
N
437
N
O
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
N
N
448
S
C
N
449
N
C
N
450
N
O
N
451
N
C
Y
452
N
C
Y
453
N
C
Y
454
N
C
Y
455
N
C
Y
456
N
C
Y
457
N
C
N
458
N
O
N
459
N
O
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
N
N
472
S
C
N
473
N
C
N
474
N
O
N
475
N
C
N
476
N
C
N
477
N
C
N
478
N
O
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
Y
93
N
sing
Y
94
N
sing
Y
95
N
doub
N
96
N
sing
Y
97
N
sing
Y
98
N
sing
Y
99
N
doub
N
100
N
sing
Y
101
N
doub
N
102
N
sing
N
103
N
sing
Y
104
N
sing
Y
105
N
doub
N
106
N
sing
Y
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
doub
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
doub
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
doub
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
Y
166
N
sing
Y
167
N
sing
Y
168
N
doub
N
169
N
sing
Y
170
N
sing
N
171
N
sing
Y
172
N
doub
N
173
N
doub
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
doub
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
doub
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
doub
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
doub
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
doub
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
doub
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
doub
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
doub
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
doub
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
doub
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
Y
276
N
sing
Y
277
N
doub
Y
278
N
doub
N
279
N
sing
Y
280
N
sing
N
281
N
sing
Y
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
doub
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
doub
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
doub
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
doub
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
doub
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
Y
382
N
doub
Y
383
N
sing
Y
384
N
sing
N
385
N
sing
Y
386
N
doub
N
387
N
sing
Y
388
N
doub
N
389
N
sing
Y
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
doub
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
doub
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
doub
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
doub
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
Y
451
N
doub
Y
452
N
sing
Y
453
N
sing
N
454
N
sing
Y
455
N
doub
N
456
N
sing
Y
457
N
doub
N
458
N
sing
Y
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
doub
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
354
630
641
10.1016/j.jmb.2005.09.048
16246368
Structures of Mycobacterium tuberculosis DosR and DosR-DNA complex involved in gene activation during adaptation to hypoxic latency.
2005
10.2210/pdb1zlk/pdb
pdb_00001zlk
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2003-03-30
SINGLE WAVELENGTH
M
x-ray
1
0.96411
1.0
19-ID
APS
0.96411
SYNCHROTRON
APS BEAMLINE 19-ID
13182.437
5'-D(*GP*GP*CP*CP*CP*GP*CP*GP*CP*TP*TP*TP*GP*GP*GP*GP*AP*CP*TP*AP*AP*AP*GP*TP*CP*CP*CP*TP*AP*AP*CP*CP*CP*TP*GP*GP*CP*CP*AP*CP*GP*AP*T)-3'
1
syn
polymer
13302.508
5'-D(*CP*GP*TP*GP*GP*CP*CP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*AP*CP*TP*TP*TP*AP*GP*TP*CP*CP*CP*CP*AP*AP*AP*GP*CP*GP*CP*GP*GP*GP*CP*CP*AP*T)-3'
1
syn
polymer
10513.998
Dormancy Survival Regulator
C-terminal domain
2
man
polymer
DosR
no
no
(DG)(DG)(DC)(DC)(DC)(DG)(DC)(DG)(DC)(DT)(DT)(DT)(DG)(DG)(DG)(DG)(DA)(DC)(DT)(DA)
(DA)(DA)(DG)(DT)(DC)(DC)(DC)(DT)(DA)(DA)(DC)(DC)(DC)(DT)(DG)(DG)(DC)(DC)(DA)(DC)
(DG)(DA)(DT)
GGCCCGCGCTTTGGGGACTAAAGTCCCTAACCCTGGCCACGAT
C
polydeoxyribonucleotide
no
no
(DC)(DG)(DT)(DG)(DG)(DC)(DC)(DA)(DG)(DG)(DG)(DT)(DT)(DA)(DG)(DG)(DG)(DA)(DC)(DT)
(DT)(DT)(DA)(DG)(DT)(DC)(DC)(DC)(DC)(DA)(DA)(DA)(DG)(DC)(DG)(DC)(DG)(DG)(DG)(DC)
(DC)(DA)(DT)
CGTGGCCAGGGTTAGGGACTTTAGTCCCCAAAGCGCGGGCCAT
D
polydeoxyribonucleotide
no
no
MGSSHHHHHHSSGLVPRGSHMQDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKTVKNYVSRLLAKLGMERRTQAAV
FATELKRSRPPGDGP
MGSSHHHHHHSSGLVPRGSHMQDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKTVKNYVSRLLAKLGMERRTQAAV
FATELKRSRPPGDGP
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Mycobacterium
Escherichia
Escherichia coli
sample
dosR, devR, Rv3133c
1773
Mycobacterium tuberculosis
469008
Escherichia coli BL21(DE3)
BL21(DE3)
Plasmid
pET28(+)
1
2.97
58.64
VAPOR DIFFUSION, SITTING DROP
8.0
PEG 400, HEPES, calcium chloride, pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K
298
PEG 400
1
HEPES
1
calcium chloride
1
H2O
1
PEG 400
2
HEPES
2
calcium chloride
2
H2O
2
16.952
1
C
10
D
31
13.257
C_DT10:DA31_D
1
-7.473
-0.258
0.038
0.181
15.313
1
20
C
11
D
30
2.220
C_DT11:DA30_D
2
-10.556
-0.478
-0.122
0.260
2.102
1
19
C
14
D
27
0.037
C_DG14:DC27_D
3
-4.723
-0.376
-0.415
0.195
-18.187
1
19
C
15
D
26
-10.467
C_DG15:DC26_D
4
-3.296
0.185
-1.101
-0.168
-26.486
1
19
C
16
D
25
-6.386
C_DG16:DC25_D
5
-17.869
-0.222
-1.797
-0.594
-15.398
1
20
C
17
D
24
1.586
C_DA17:DT24_D
6
-10.302
0.345
-1.157
-0.302
29.601
1
19
C
18
D
23
2.531
C_DC18:DG23_D
7
-15.438
-0.311
-0.995
-0.208
28.207
1
20
C
19
D
22
2.388
C_DT19:DA22_D
8
-25.627
-0.251
-0.880
0.057
6.451
1
20
C
20
D
21
-0.105
C_DA20:DT21_D
9
-20.138
0.925
-0.033
-0.188
2.345
1
20
C
21
D
20
-1.117
C_DA21:DT20_D
10
-21.287
0.193
0.121
-0.391
-17.087
C
22
D
19
10.524
C_DA22:DT19_D
11
-18.520
0.111
-0.498
0.301
-25.384
1
19
C
23
D
18
5.231
C_DG23:DC18_D
12
-6.584
0.151
-1.373
-0.159
2.421
1
20
C
24
D
17
0.550
C_DT24:DA17_D
13
-8.084
-0.605
-0.938
-0.424
16.047
1
19
C
25
D
16
-2.820
C_DC25:DG16_D
14
-17.485
0.218
-1.232
-0.611
9.413
1
19
C
26
D
15
-8.686
C_DC26:DG15_D
15
-4.928
-0.372
-0.374
-0.294
-7.657
1
19
C
27
D
14
1.553
C_DC27:DG14_D
16
-1.057
0.280
0.104
0.153
4.675
1
20
C
28
D
13
-0.847
C_DT28:DA13_D
17
-0.774
0.354
0.478
0.056
11.365
C
29
D
12
4.794
C_DA29:DT12_D
18
-10.383
0.494
-0.469
0.337
-3.558
1
20
C
30
D
11
3.646
C_DA30:DT11_D
19
-12.036
0.835
-0.357
0.085
7.034
1
19
C
31
D
10
-2.470
C_DC31:DG10_D
20
-14.293
0.969
-0.470
-0.586
3.121
34.094
C
C
10
11
4.919
D
D
31
30
3.132
2.871
0.213
0.005
CC_DT10DT11:DA30DA31_DD
1
4.876
-8.353
33.634
-0.431
0.383
3.345
42.351
C
C
14
15
22.788
D
D
27
26
3.504
16.061
-1.772
-0.185
CC_DG14DG15:DC26DC27_DD
2
-4.114
5.838
39.108
-2.048
1.993
3.463
27.344
C
C
15
16
18.159
D
D
26
25
3.668
8.448
-1.092
-0.024
CC_DG15DG16:DC25DC26_DD
3
0.597
-1.282
26.023
-2.396
2.475
3.043
27.443
C
C
16
17
20.701
D
D
25
24
3.308
9.421
0.346
0.749
CC_DG16DA17:DT24DC25_DD
4
-9.394
20.640
24.057
-0.831
-3.134
2.404
23.930
C
C
17
18
-13.223
D
D
24
23
2.341
-5.430
1.012
-0.212
CC_DA17DC18:DG23DT24_DD
5
2.008
-4.889
23.229
0.788
-1.960
3.212
38.263
C
C
18
19
13.089
D
D
23
22
3.273
8.493
-0.381
0.385
CC_DC18DT19:DA22DG23_DD
6
4.608
-7.102
37.067
-0.488
1.164
3.942
36.646
C
C
19
20
4.356
D
D
22
21
4.004
2.736
0.629
-0.405
CC_DT19DA20:DT21DA22_DD
7
-1.214
1.933
36.528
-1.101
-1.204
3.222
34.057
C
C
20
21
-3.234
D
D
21
20
3.209
-1.892
0.181
-0.246
CC_DA20DA21:DT20DT21_DD
8
2.109
-3.605
33.942
-0.124
0.021
3.403
36.979
C
C
21
22
15.407
D
D
20
19
3.689
9.650
0.353
-0.723
CC_DA21DA22:DT19DT20_DD
9
3.779
-6.034
35.546
-2.579
0.007
3.572
37.401
C
C
22
23
14.041
D
D
19
18
3.606
8.920
0.118
0.307
CC_DA22DG23:DC18DT19_DD
10
-1.643
2.587
36.323
-0.829
-0.426
2.769
23.325
C
C
23
24
0.676
D
D
18
17
2.619
0.272
-1.201
-0.373
CC_DG23DT24:DA17DC18_DD
11
-3.671
9.116
23.037
-0.999
1.930
3.004
28.289
C
C
24
25
19.309
D
D
17
16
3.148
9.207
-0.465
0.553
CC_DT24DC25:DG16DA17_DD
12
5.648
-11.845
26.185
-0.957
2.232
3.388
28.390
C
C
25
26
13.061
D
D
16
15
3.714
6.315
0.575
-0.279
CC_DC25DC26:DG15DG16_DD
13
-5.432
11.234
27.164
-2.184
-2.561
3.626
40.401
C
C
26
27
10.552
D
D
15
14
3.636
7.246
1.729
-0.336
CC_DC26DC27:DG14DG15_DD
14
2.670
-3.888
39.687
-1.399
-2.168
2.923
30.927
C
C
27
28
7.033
D
D
14
13
3.026
3.735
-0.546
-1.032
CC_DC27DT28:DA13DG14_DD
15
-3.204
6.033
30.542
-2.596
0.457
3.020
34.485
C
C
28
29
9.751
D
D
13
12
3.273
5.710
-0.275
-0.470
CC_DT28DA29:DT12DA13_DD
16
7.567
-12.921
33.194
-1.662
1.618
3.670
39.079
C
C
29
30
13.762
D
D
12
11
3.720
9.088
-0.800
-0.150
CC_DA29DA30:DT11DT12_DD
17
-6.417
9.718
37.522
-1.487
0.304
2.802
34.619
C
C
30
31
2.122
D
D
11
10
2.793
1.262
-0.365
0.010
CC_DA30DC31:DG10DT11_DD
18
-1.154
1.940
34.578
-0.149
0.461
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ncs_dom_lim
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Refinement description
1
0
2006-01-31
1
1
2008-04-30
1
2
2011-07-13
1
3
2023-08-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ncs_dom_lim.beg_auth_comp_id
_struct_ncs_dom_lim.end_auth_comp_id
_struct_ref_seq_dif.details
Crystal Structure of the Mycobacterium tuberculosis Hypoxic Response Regulator DosR C-terminal Domain
RCSB
Y
RCSB
2005-05-06
REL
REL
1ZLJ
pdb entry 1ZLJ
PDB
experimental model
n
1
1
C
n
2
2
C
n
3
3
C
n
4
4
C
n
5
5
C
n
6
6
C
n
7
7
C
G
8
n
8
DG
8
C
C
9
n
9
DC
9
C
T
10
n
10
DT
10
C
T
11
n
11
DT
11
C
T
12
n
12
DT
12
C
G
13
n
13
DG
13
C
G
14
n
14
DG
14
C
G
15
n
15
DG
15
C
G
16
n
16
DG
16
C
A
17
n
17
DA
17
C
C
18
n
18
DC
18
C
T
19
n
19
DT
19
C
A
20
n
20
DA
20
C
A
21
n
21
DA
21
C
A
22
n
22
DA
22
C
G
23
n
23
DG
23
C
T
24
n
24
DT
24
C
C
25
n
25
DC
25
C
C
26
n
26
DC
26
C
C
27
n
27
DC
27
C
T
28
n
28
DT
28
C
A
29
n
29
DA
29
C
A
30
n
30
DA
30
C
C
31
n
31
DC
31
C
n
32
32
C
n
33
33
C
n
34
34
C
n
35
35
C
n
36
36
C
n
37
37
C
n
38
38
C
n
39
39
C
n
40
40
C
n
41
41
C
n
42
42
C
n
43
43
C
n
1
0
D
n
2
1
D
n
3
2
D
n
4
3
D
n
5
4
D
n
6
5
D
n
7
6
D
A
7
n
8
DA
7
D
G
8
n
9
DG
8
D
G
9
n
10
DG
9
D
G
10
n
11
DG
10
D
T
11
n
12
DT
11
D
T
12
n
13
DT
12
D
A
13
n
14
DA
13
D
G
14
n
15
DG
14
D
G
15
n
16
DG
15
D
G
16
n
17
DG
16
D
A
17
n
18
DA
17
D
C
18
n
19
DC
18
D
T
19
n
20
DT
19
D
T
20
n
21
DT
20
D
T
21
n
22
DT
21
D
A
22
n
23
DA
22
D
G
23
n
24
DG
23
D
T
24
n
25
DT
24
D
C
25
n
26
DC
25
D
C
26
n
27
DC
26
D
C
27
n
28
DC
27
D
C
28
n
29
DC
28
D
A
29
n
30
DA
29
D
A
30
n
31
DA
30
D
A
31
n
32
DA
31
D
n
33
32
D
n
34
33
D
n
35
34
D
n
36
35
D
n
37
36
D
n
38
37
D
n
39
38
D
n
40
39
D
n
41
40
D
n
42
41
D
n
43
42
D
n
1
123
A
n
2
124
A
n
3
125
A
n
4
126
A
n
5
127
A
n
6
128
A
n
7
129
A
n
8
130
A
n
9
131
A
n
10
132
A
n
11
133
A
n
12
134
A
n
13
135
A
n
14
136
A
n
15
137
A
n
16
138
A
n
17
139
A
n
18
140
A
n
19
141
A
n
20
142
A
n
21
143
A
n
22
144
A
ASP
145
n
23
ASP
145
A
PRO
146
n
24
PRO
146
A
LEU
147
n
25
LEU
147
A
SER
148
n
26
SER
148
A
GLY
149
n
27
GLY
149
A
LEU
150
n
28
LEU
150
A
THR
151
n
29
THR
151
A
ASP
152
n
30
ASP
152
A
GLN
153
n
31
GLN
153
A
GLU
154
n
32
GLU
154
A
ARG
155
n
33
ARG
155
A
THR
156
n
34
THR
156
A
LEU
157
n
35
LEU
157
A
LEU
158
n
36
LEU
158
A
GLY
159
n
37
GLY
159
A
LEU
160
n
38
LEU
160
A
LEU
161
n
39
LEU
161
A
SER
162
n
40
SER
162
A
GLU
163
n
41
GLU
163
A
GLY
164
n
42
GLY
164
A
LEU
165
n
43
LEU
165
A
THR
166
n
44
THR
166
A
ASN
167
n
45
ASN
167
A
LYS
168
n
46
LYS
168
A
GLN
169
n
47
GLN
169
A
ILE
170
n
48
ILE
170
A
ALA
171
n
49
ALA
171
A
ASP
172
n
50
ASP
172
A
ARG
173
n
51
ARG
173
A
MET
174
n
52
MET
174
A
PHE
175
n
53
PHE
175
A
LEU
176
n
54
LEU
176
A
ALA
177
n
55
ALA
177
A
GLU
178
n
56
GLU
178
A
LYS
179
n
57
LYS
179
A
THR
180
n
58
THR
180
A
VAL
181
n
59
VAL
181
A
LYS
182
n
60
LYS
182
A
ASN
183
n
61
ASN
183
A
TYR
184
n
62
TYR
184
A
VAL
185
n
63
VAL
185
A
SER
186
n
64
SER
186
A
ARG
187
n
65
ARG
187
A
LEU
188
n
66
LEU
188
A
LEU
189
n
67
LEU
189
A
ALA
190
n
68
ALA
190
A
LYS
191
n
69
LYS
191
A
LEU
192
n
70
LEU
192
A
GLY
193
n
71
GLY
193
A
MET
194
n
72
MET
194
A
GLU
195
n
73
GLU
195
A
ARG
196
n
74
ARG
196
A
ARG
197
n
75
ARG
197
A
THR
198
n
76
THR
198
A
GLN
199
n
77
GLN
199
A
ALA
200
n
78
ALA
200
A
ALA
201
n
79
ALA
201
A
VAL
202
n
80
VAL
202
A
PHE
203
n
81
PHE
203
A
ALA
204
n
82
ALA
204
A
THR
205
n
83
THR
205
A
GLU
206
n
84
GLU
206
A
LEU
207
n
85
LEU
207
A
LYS
208
n
86
LYS
208
A
ARG
209
n
87
ARG
209
A
n
88
210
A
n
89
211
A
n
90
212
A
n
91
213
A
n
92
214
A
n
93
215
A
n
94
216
A
n
95
217
A
n
1
123
B
n
2
124
B
n
3
125
B
n
4
126
B
n
5
127
B
n
6
128
B
n
7
129
B
n
8
130
B
n
9
131
B
n
10
132
B
n
11
133
B
n
12
134
B
n
13
135
B
n
14
136
B
n
15
137
B
n
16
138
B
n
17
139
B
n
18
140
B
n
19
141
B
n
20
142
B
n
21
143
B
n
22
144
B
ASP
145
n
23
ASP
145
B
PRO
146
n
24
PRO
146
B
LEU
147
n
25
LEU
147
B
SER
148
n
26
SER
148
B
GLY
149
n
27
GLY
149
B
LEU
150
n
28
LEU
150
B
THR
151
n
29
THR
151
B
ASP
152
n
30
ASP
152
B
GLN
153
n
31
GLN
153
B
GLU
154
n
32
GLU
154
B
ARG
155
n
33
ARG
155
B
THR
156
n
34
THR
156
B
LEU
157
n
35
LEU
157
B
LEU
158
n
36
LEU
158
B
GLY
159
n
37
GLY
159
B
LEU
160
n
38
LEU
160
B
LEU
161
n
39
LEU
161
B
SER
162
n
40
SER
162
B
GLU
163
n
41
GLU
163
B
GLY
164
n
42
GLY
164
B
LEU
165
n
43
LEU
165
B
THR
166
n
44
THR
166
B
ASN
167
n
45
ASN
167
B
LYS
168
n
46
LYS
168
B
GLN
169
n
47
GLN
169
B
ILE
170
n
48
ILE
170
B
ALA
171
n
49
ALA
171
B
ASP
172
n
50
ASP
172
B
ARG
173
n
51
ARG
173
B
MET
174
n
52
MET
174
B
PHE
175
n
53
PHE
175
B
LEU
176
n
54
LEU
176
B
ALA
177
n
55
ALA
177
B
GLU
178
n
56
GLU
178
B
LYS
179
n
57
LYS
179
B
THR
180
n
58
THR
180
B
VAL
181
n
59
VAL
181
B
LYS
182
n
60
LYS
182
B
ASN
183
n
61
ASN
183
B
TYR
184
n
62
TYR
184
B
VAL
185
n
63
VAL
185
B
SER
186
n
64
SER
186
B
ARG
187
n
65
ARG
187
B
LEU
188
n
66
LEU
188
B
LEU
189
n
67
LEU
189
B
ALA
190
n
68
ALA
190
B
LYS
191
n
69
LYS
191
B
LEU
192
n
70
LEU
192
B
GLY
193
n
71
GLY
193
B
MET
194
n
72
MET
194
B
GLU
195
n
73
GLU
195
B
ARG
196
n
74
ARG
196
B
ARG
197
n
75
ARG
197
B
THR
198
n
76
THR
198
B
GLN
199
n
77
GLN
199
B
ALA
200
n
78
ALA
200
B
ALA
201
n
79
ALA
201
B
VAL
202
n
80
VAL
202
B
PHE
203
n
81
PHE
203
B
ALA
204
n
82
ALA
204
B
THR
205
n
83
THR
205
B
GLU
206
n
84
GLU
206
B
LEU
207
n
85
LEU
207
B
LYS
208
n
86
LYS
208
B
ARG
209
n
87
ARG
209
B
n
88
210
B
n
89
211
B
n
90
212
B
n
91
213
B
n
92
214
B
n
93
215
B
n
94
216
B
n
95
217
B
author_defined_assembly
4
tetrameric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
CG
ARG
209
C
CG
ARG
87
1
Y
1
A
CD
ARG
209
C
CD
ARG
87
1
Y
1
A
NE
ARG
209
C
NE
ARG
87
1
Y
1
A
CZ
ARG
209
C
CZ
ARG
87
1
Y
1
A
NH1
ARG
209
C
NH1
ARG
87
1
Y
1
A
NH2
ARG
209
C
NH2
ARG
87
1
Y
1
B
CG
ARG
209
D
CG
ARG
87
1
Y
1
B
CD
ARG
209
D
CD
ARG
87
1
Y
1
B
NE
ARG
209
D
NE
ARG
87
1
Y
1
B
CZ
ARG
209
D
CZ
ARG
87
1
Y
1
B
NH1
ARG
209
D
NH1
ARG
87
1
Y
1
B
NH2
ARG
209
D
NH2
ARG
87
1
Y
1
C
DG
1
A
DG
1
1
Y
1
C
DG
2
A
DG
2
1
Y
1
C
DC
3
A
DC
3
1
Y
1
C
DC
4
A
DC
4
1
Y
1
C
DC
5
A
DC
5
1
Y
1
C
DG
6
A
DG
6
1
Y
1
C
DC
7
A
DC
7
1
Y
1
C
DC
32
A
DC
32
1
Y
1
C
DC
33
A
DC
33
1
Y
1
C
DT
34
A
DT
34
1
Y
1
C
DG
35
A
DG
35
1
Y
1
C
DG
36
A
DG
36
1
Y
1
C
DC
37
A
DC
37
1
Y
1
C
DC
38
A
DC
38
1
Y
1
C
DA
39
A
DA
39
1
Y
1
C
DC
40
A
DC
40
1
Y
1
C
DG
41
A
DG
41
1
Y
1
C
DA
42
A
DA
42
1
Y
1
C
DT
43
A
DT
43
1
Y
1
D
DC
0
B
DC
1
1
Y
1
D
DG
1
B
DG
2
1
Y
1
D
DT
2
B
DT
3
1
Y
1
D
DG
3
B
DG
4
1
Y
1
D
DG
4
B
DG
5
1
Y
1
D
DC
5
B
DC
6
1
Y
1
D
DC
6
B
DC
7
1
Y
1
D
DG
32
B
DG
33
1
Y
1
D
DC
33
B
DC
34
1
Y
1
D
DG
34
B
DG
35
1
Y
1
D
DC
35
B
DC
36
1
Y
1
D
DG
36
B
DG
37
1
Y
1
D
DG
37
B
DG
38
1
Y
1
D
DG
38
B
DG
39
1
Y
1
D
DC
39
B
DC
40
1
Y
1
D
DC
40
B
DC
41
1
Y
1
D
DA
41
B
DA
42
1
Y
1
D
DT
42
B
DT
43
1
Y
1
A
MET
123
C
MET
1
1
Y
1
A
GLY
124
C
GLY
2
1
Y
1
A
SER
125
C
SER
3
1
Y
1
A
SER
126
C
SER
4
1
Y
1
A
HIS
127
C
HIS
5
1
Y
1
A
HIS
128
C
HIS
6
1
Y
1
A
HIS
129
C
HIS
7
1
Y
1
A
HIS
130
C
HIS
8
1
Y
1
A
HIS
131
C
HIS
9
1
Y
1
A
HIS
132
C
HIS
10
1
Y
1
A
SER
133
C
SER
11
1
Y
1
A
SER
134
C
SER
12
1
Y
1
A
GLY
135
C
GLY
13
1
Y
1
A
LEU
136
C
LEU
14
1
Y
1
A
VAL
137
C
VAL
15
1
Y
1
A
PRO
138
C
PRO
16
1
Y
1
A
ARG
139
C
ARG
17
1
Y
1
A
GLY
140
C
GLY
18
1
Y
1
A
SER
141
C
SER
19
1
Y
1
A
HIS
142
C
HIS
20
1
Y
1
A
MET
143
C
MET
21
1
Y
1
A
GLN
144
C
GLN
22
1
Y
1
A
SER
210
C
SER
88
1
Y
1
A
ARG
211
C
ARG
89
1
Y
1
A
PRO
212
C
PRO
90
1
Y
1
A
PRO
213
C
PRO
91
1
Y
1
A
GLY
214
C
GLY
92
1
Y
1
A
ASP
215
C
ASP
93
1
Y
1
A
GLY
216
C
GLY
94
1
Y
1
A
PRO
217
C
PRO
95
1
Y
1
B
MET
123
D
MET
1
1
Y
1
B
GLY
124
D
GLY
2
1
Y
1
B
SER
125
D
SER
3
1
Y
1
B
SER
126
D
SER
4
1
Y
1
B
HIS
127
D
HIS
5
1
Y
1
B
HIS
128
D
HIS
6
1
Y
1
B
HIS
129
D
HIS
7
1
Y
1
B
HIS
130
D
HIS
8
1
Y
1
B
HIS
131
D
HIS
9
1
Y
1
B
HIS
132
D
HIS
10
1
Y
1
B
SER
133
D
SER
11
1
Y
1
B
SER
134
D
SER
12
1
Y
1
B
GLY
135
D
GLY
13
1
Y
1
B
LEU
136
D
LEU
14
1
Y
1
B
VAL
137
D
VAL
15
1
Y
1
B
PRO
138
D
PRO
16
1
Y
1
B
ARG
139
D
ARG
17
1
Y
1
B
GLY
140
D
GLY
18
1
Y
1
B
SER
141
D
SER
19
1
Y
1
B
HIS
142
D
HIS
20
1
Y
1
B
MET
143
D
MET
21
1
Y
1
B
GLN
144
D
GLN
22
1
Y
1
B
SER
210
D
SER
88
1
Y
1
B
ARG
211
D
ARG
89
1
Y
1
B
PRO
212
D
PRO
90
1
Y
1
B
PRO
213
D
PRO
91
1
Y
1
B
GLY
214
D
GLY
92
1
Y
1
B
ASP
215
D
ASP
93
1
Y
1
B
GLY
216
D
GLY
94
1
Y
1
B
PRO
217
D
PRO
95
1
Y
1
1.85
0.30
108.30
110.15
C
C
C
O4'
C1'
N1
DC
DC
DC
9
9
9
N
1
2.13
0.30
108.30
110.43
C
C
C
O4'
C1'
N9
DG
DG
DG
14
14
14
N
1
3.35
0.30
108.30
111.65
C
C
C
O4'
C1'
N9
DA
DA
DA
17
17
17
N
1
3.87
0.30
108.30
112.17
C
C
C
O4'
C1'
N9
DA
DA
DA
20
20
20
N
1
3.27
0.30
108.30
111.57
C
C
C
O4'
C1'
N9
DA
DA
DA
21
21
21
N
1
-5.05
0.80
102.40
97.35
C
C
C
C3'
C2'
C1'
DC
DC
DC
26
26
26
N
1
4.77
0.30
108.30
113.07
C
C
C
O4'
C1'
N1
DC
DC
DC
26
26
26
N
1
3.82
0.30
108.30
112.12
C
C
C
O4'
C1'
N1
DC
DC
DC
27
27
27
N
1
2.65
0.30
108.30
110.95
C
C
C
O4'
C1'
N1
DT
DT
DT
28
28
28
N
1
2.30
0.30
108.30
110.60
D
D
D
O4'
C1'
N1
DT
DT
DT
11
11
11
N
1
3.23
0.30
108.30
111.53
D
D
D
O4'
C1'
N9
DG
DG
DG
14
14
14
N
1
3.67
0.30
108.30
111.97
D
D
D
O4'
C1'
N9
DA
DA
DA
17
17
17
N
1
4.76
0.30
108.30
113.06
D
D
D
O4'
C1'
N1
DC
DC
DC
26
26
26
N
1
4.32
0.30
108.30
112.62
D
D
D
O4'
C1'
N1
DC
DC
DC
27
27
27
N
1
2.72
0.30
108.30
111.02
D
D
D
O4'
C1'
N1
DC
DC
DC
28
28
28
N
1
A
THR
151
-61.98
-174.27
1
B
THR
151
-64.48
-173.30
1
B
ASP
152
-45.90
-70.67
82.903
-1.05
0.00
2.86
-4.00
0.00
8.37
0.892
0.865
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.28802
0.27154
0.27233
0.27233
3.10
50.0
407
7800
7800
5.0
79.66
23.638
0.394
RANDOM
1
Overall
THROUGHOUT
0
MOLECULAR REPLACEMENT
0.996
0.499
0.80
0.80
1.40
pdb entry 1ZLJ
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
3.10
50.0
0
2018
0
1008
1010
0.007
0.021
2148
0.001
0.020
1471
1.086
2.565
3104
0.841
3.000
3503
4.242
5.000
128
0.048
0.200
313
0.003
0.020
1622
0.001
0.020
206
0.220
0.300
524
0.258
0.300
1961
0.088
0.500
1001
0.227
0.500
67
0.254
0.300
7
0.262
0.300
29
0.087
0.500
1
1
C
1
384
X-RAY DIFFRACTION
tight positional
0.05
0.10
1
C
1
619
X-RAY DIFFRACTION
medium positional
0.19
0.40
2
A
2
360
X-RAY DIFFRACTION
medium positional
0.14
0.40
0.569
0.427
3.183
15
385
20
72.8
3.1
50
1ZLK
8211
0.092
1
10.7
3.1
79.5
0.482
3.1
3.21
2.03
60.7
refinement
REFMAC
5.1.24
data reduction
HKL-2000
data scaling
SCALEPACK
phasing
MOLREP
Crystal Structure of the Mycobacterium tuberculosis Hypoxic Response Regulator DosR C-terminal Domain-DNA Complex
1
N
N
2
N
N
3
N
N
3
N
N
The asymmetric unit contains 2 biological protein monomers forming one functional dimer bound to double-stranded oligonucleotide.
A
LEU
160
C
LEU
38
HELX_P
A
GLY
164
C
GLY
42
5
1
5
A
THR
166
C
THR
44
HELX_P
A
ARG
173
C
ARG
51
1
2
8
A
ALA
177
C
ALA
55
HELX_P
A
GLY
193
C
GLY
71
1
3
17
A
ARG
196
C
ARG
74
HELX_P
A
ARG
209
C
ARG
87
1
4
14
B
ARG
155
D
ARG
33
HELX_P
B
LEU
160
D
LEU
38
1
5
6
B
LEU
161
D
LEU
39
HELX_P
B
GLY
164
D
GLY
42
5
6
4
B
THR
166
D
THR
44
HELX_P
B
ARG
173
D
ARG
51
1
7
8
B
ALA
177
D
ALA
55
HELX_P
B
GLY
193
D
GLY
71
1
8
17
B
ARG
196
D
ARG
74
HELX_P
B
ARG
209
D
ARG
87
1
9
14
hydrog
DT-DA PAIR
C
DT
10
A
N3
DT
10
1_555
D
DA
31
B
N1
DA
32
1_555
hydrog
WATSON-CRICK
C
DT
11
A
N3
DT
11
1_555
D
DA
30
B
N1
DA
31
1_555
hydrog
WATSON-CRICK
C
DT
11
A
O4
DT
11
1_555
D
DA
30
B
N6
DA
31
1_555
hydrog
WATSON-CRICK
C
DG
14
A
N1
DG
14
1_555
D
DC
27
B
N3
DC
28
1_555
hydrog
WATSON-CRICK
C
DG
14
A
N2
DG
14
1_555
D
DC
27
B
O2
DC
28
1_555
hydrog
WATSON-CRICK
C
DG
14
A
O6
DG
14
1_555
D
DC
27
B
N4
DC
28
1_555
hydrog
WATSON-CRICK
C
DG
15
A
N1
DG
15
1_555
D
DC
26
B
N3
DC
27
1_555
hydrog
WATSON-CRICK
C
DG
15
A
N2
DG
15
1_555
D
DC
26
B
O2
DC
27
1_555
hydrog
WATSON-CRICK
C
DG
15
A
O6
DG
15
1_555
D
DC
26
B
N4
DC
27
1_555
hydrog
WATSON-CRICK
C
DG
16
A
N1
DG
16
1_555
D
DC
25
B
N3
DC
26
1_555
hydrog
WATSON-CRICK
C
DG
16
A
N2
DG
16
1_555
D
DC
25
B
O2
DC
26
1_555
hydrog
WATSON-CRICK
C
DG
16
A
O6
DG
16
1_555
D
DC
25
B
N4
DC
26
1_555
hydrog
DG-DC PAIR
C
DG
16
A
N2
DG
16
1_555
D
DC
26
B
O2
DC
27
1_555
hydrog
WATSON-CRICK
C
DA
17
A
N1
DA
17
1_555
D
DT
24
B
N3
DT
25
1_555
hydrog
WATSON-CRICK
C
DA
17
A
N6
DA
17
1_555
D
DT
24
B
O4
DT
25
1_555
hydrog
WATSON-CRICK
C
DC
18
A
N3
DC
18
1_555
D
DG
23
B
N1
DG
24
1_555
hydrog
WATSON-CRICK
C
DC
18
A
N4
DC
18
1_555
D
DG
23
B
O6
DG
24
1_555
hydrog
WATSON-CRICK
C
DC
18
A
O2
DC
18
1_555
D
DG
23
B
N2
DG
24
1_555
hydrog
WATSON-CRICK
C
DT
19
A
N3
DT
19
1_555
D
DA
22
B
N1
DA
23
1_555
hydrog
WATSON-CRICK
C
DT
19
A
O4
DT
19
1_555
D
DA
22
B
N6
DA
23
1_555
hydrog
DT-DG MISPAIR
C
DT
19
A
O2
DT
19
1_555
D
DG
23
B
N2
DG
24
1_555
hydrog
WATSON-CRICK
C
DA
20
A
N1
DA
20
1_555
D
DT
21
B
N3
DT
22
1_555
hydrog
WATSON-CRICK
C
DA
20
A
N6
DA
20
1_555
D
DT
21
B
O4
DT
22
1_555
hydrog
WATSON-CRICK
C
DA
21
A
N1
DA
21
1_555
D
DT
20
B
N3
DT
21
1_555
hydrog
WATSON-CRICK
C
DA
21
A
N6
DA
21
1_555
D
DT
20
B
O4
DT
21
1_555
hydrog
DA-DT PAIR
C
DA
22
A
N1
DA
22
1_555
D
DT
19
B
N3
DT
20
1_555
hydrog
WATSON-CRICK
C
DG
23
A
N1
DG
23
1_555
D
DC
18
B
N3
DC
19
1_555
hydrog
WATSON-CRICK
C
DG
23
A
N2
DG
23
1_555
D
DC
18
B
O2
DC
19
1_555
hydrog
WATSON-CRICK
C
DG
23
A
O6
DG
23
1_555
D
DC
18
B
N4
DC
19
1_555
hydrog
WATSON-CRICK
C
DT
24
A
N3
DT
24
1_555
D
DA
17
B
N1
DA
18
1_555
hydrog
WATSON-CRICK
C
DT
24
A
O4
DT
24
1_555
D
DA
17
B
N6
DA
18
1_555
hydrog
WATSON-CRICK
C
DC
25
A
N3
DC
25
1_555
D
DG
16
B
N1
DG
17
1_555
hydrog
WATSON-CRICK
C
DC
25
A
N4
DC
25
1_555
D
DG
16
B
O6
DG
17
1_555
hydrog
WATSON-CRICK
C
DC
25
A
O2
DC
25
1_555
D
DG
16
B
N2
DG
17
1_555
hydrog
WATSON-CRICK
C
DC
26
A
N3
DC
26
1_555
D
DG
15
B
N1
DG
16
1_555
hydrog
WATSON-CRICK
C
DC
26
A
N4
DC
26
1_555
D
DG
15
B
O6
DG
16
1_555
hydrog
WATSON-CRICK
C
DC
26
A
O2
DC
26
1_555
D
DG
15
B
N2
DG
16
1_555
hydrog
WATSON-CRICK
C
DC
27
A
N3
DC
27
1_555
D
DG
14
B
N1
DG
15
1_555
hydrog
WATSON-CRICK
C
DC
27
A
N4
DC
27
1_555
D
DG
14
B
O6
DG
15
1_555
hydrog
WATSON-CRICK
C
DC
27
A
O2
DC
27
1_555
D
DG
14
B
N2
DG
15
1_555
hydrog
WATSON-CRICK
C
DT
28
A
N3
DT
28
1_555
D
DA
13
B
N1
DA
14
1_555
hydrog
WATSON-CRICK
C
DT
28
A
O4
DT
28
1_555
D
DA
13
B
N6
DA
14
1_555
hydrog
DA-DT PAIR
C
DA
29
A
N1
DA
29
1_555
D
DT
12
B
N3
DT
13
1_555
hydrog
WATSON-CRICK
C
DA
30
A
N1
DA
30
1_555
D
DT
11
B
N3
DT
12
1_555
hydrog
WATSON-CRICK
C
DA
30
A
N6
DA
30
1_555
D
DT
11
B
O4
DT
12
1_555
hydrog
WATSON-CRICK
C
DC
31
A
N3
DC
31
1_555
D
DG
10
B
N1
DG
11
1_555
hydrog
WATSON-CRICK
C
DC
31
A
N4
DC
31
1_555
D
DG
10
B
O6
DG
11
1_555
hydrog
WATSON-CRICK
C
DC
31
A
O2
DC
31
1_555
D
DG
10
B
N2
DG
11
1_555
Transcription/DNA
helix-turn-helix, protein-DNA complex, Transcription-DNA COMPLEX
A
B
C
D
C
D
A
ASP
145
C
ASP
23
A
ARG
209
C
ARG
87
2
B
ASP
145
D
ASP
23
B
ARG
209
D
ARG
87
2
C
DG
14
A
DG
14
C
DT
19
A
DT
19
4
D
DG
14
B
DG
15
D
DT
19
B
DT
20
4
C
DA
22
A
DA
22
C
DC
27
A
DC
27
4
D
DA
22
B
DA
23
D
DC
27
B
DC
28
4
NP_217649
GB
3
144
15610269
QDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKTVKNYVSRLLAKLGMERRTQAAVFATELKRSRPPGDGP
1ZLK
PDB
1
1ZLK
1ZLK
PDB
2
1ZLK
144
217
1ZLK
144
217
15610269
A
1
22
95
144
217
1ZLK
144
217
15610269
B
1
22
95
1
43
1ZLK
1
43
1ZLK
C
2
1
43
0
42
1ZLK
0
42
1ZLK
D
3
1
43
1
cloning artifact
MET
123
1ZLK
A
15610269
GB
1
1
cloning artifact
GLY
124
1ZLK
A
15610269
GB
2
1
cloning artifact
SER
125
1ZLK
A
15610269
GB
3
1
cloning artifact
SER
126
1ZLK
A
15610269
GB
4
1
expression tag
HIS
127
1ZLK
A
15610269
GB
5
1
expression tag
HIS
128
1ZLK
A
15610269
GB
6
1
expression tag
HIS
129
1ZLK
A
15610269
GB
7
1
expression tag
HIS
130
1ZLK
A
15610269
GB
8
1
expression tag
HIS
131
1ZLK
A
15610269
GB
9
1
expression tag
HIS
132
1ZLK
A
15610269
GB
10
1
cloning artifact
SER
133
1ZLK
A
15610269
GB
11
1
cloning artifact
SER
134
1ZLK
A
15610269
GB
12
1
cloning artifact
GLY
135
1ZLK
A
15610269
GB
13
1
cloning artifact
LEU
136
1ZLK
A
15610269
GB
14
1
cloning artifact
VAL
137
1ZLK
A
15610269
GB
15
1
cloning artifact
PRO
138
1ZLK
A
15610269
GB
16
1
cloning artifact
ARG
139
1ZLK
A
15610269
GB
17
1
cloning artifact
GLY
140
1ZLK
A
15610269
GB
18
1
cloning artifact
SER
141
1ZLK
A
15610269
GB
19
1
cloning artifact
HIS
142
1ZLK
A
15610269
GB
20
1
cloning artifact
MET
143
1ZLK
A
15610269
GB
21
2
cloning artifact
MET
123
1ZLK
B
15610269
GB
1
2
cloning artifact
GLY
124
1ZLK
B
15610269
GB
2
2
cloning artifact
SER
125
1ZLK
B
15610269
GB
3
2
cloning artifact
SER
126
1ZLK
B
15610269
GB
4
2
expression tag
HIS
127
1ZLK
B
15610269
GB
5
2
expression tag
HIS
128
1ZLK
B
15610269
GB
6
2
expression tag
HIS
129
1ZLK
B
15610269
GB
7
2
expression tag
HIS
130
1ZLK
B
15610269
GB
8
2
expression tag
HIS
131
1ZLK
B
15610269
GB
9
2
expression tag
HIS
132
1ZLK
B
15610269
GB
10
2
cloning artifact
SER
133
1ZLK
B
15610269
GB
11
2
cloning artifact
SER
134
1ZLK
B
15610269
GB
12
2
cloning artifact
GLY
135
1ZLK
B
15610269
GB
13
2
cloning artifact
LEU
136
1ZLK
B
15610269
GB
14
2
cloning artifact
VAL
137
1ZLK
B
15610269
GB
15
2
cloning artifact
PRO
138
1ZLK
B
15610269
GB
16
2
cloning artifact
ARG
139
1ZLK
B
15610269
GB
17
2
cloning artifact
GLY
140
1ZLK
B
15610269
GB
18
2
cloning artifact
SER
141
1ZLK
B
15610269
GB
19
2
cloning artifact
HIS
142
1ZLK
B
15610269
GB
20
2
cloning artifact
MET
143
1ZLK
B
15610269
GB
21
5
C 1 2 1