0.007557
0.004363
0.000000
0.000000
0.008726
0.000000
0.000000
0.000000
0.015774
0.00000
0.00000
0.00000
Saerens, D.
Pellis, M.
Loris, R.
Pardon, E.
Dumoulin, M.
Matagne, A.
Wyns, L.
Muyldermans, S.
Conrath, K.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90
90
120
132.331
132.331
63.397
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
352
597
607
10.1016/j.jmb.2005.07.038
16095608
Identification of a universal VHH framework to graft non-canonical antigen-binding loops of camel single-domain antibodies
2005
100
1
CCD
2005-04-13
MARRESEARCH
SINGLE WAVELENGTH
M
x-ray
1
0.8300
1.0
X11
EMBL/DESY, Hamburg
0.8300
SYNCHROTRON
EMBL/DESY, HAMBURG BEAMLINE X11
15214.724
Antibody cabbcII-10:lys3
N-terminus, 142 residues
1
man
polymer
14331.160
Lysozyme C
3.2.1.17
2
nat
polymer
18.015
water
50
nat
water
immunoglobulin heavy chain VHDJ region
1,4-beta-N-acetylmuramidase C; Allergen Gal d 4; Gal d IV
E.C.3.2.1.17
no
no
QVQLVESGGGSVQAGGSLRLSCTASGYTIGPYCMGWFRQAPGGEREAVAAINMGGGITYYADSVKGRFTISRDNAKNTVT
LQMNSLKPEDTAMYYCAADSTIYASYYECGHGLSTGGYGYDSWGQGTQVTVSSRGRHHHHHH
QVQLVESGGGSVQAGGSLRLSCTASGYTIGPYCMGWFRQAPGGEREAVAAINMGGGITYYADSVKGRFTISRDNAKNTVT
LQMNSLKPEDTAMYYCAADSTIYASYYECGHGLSTGGYGYDSWGQGTQVTVSSRGRHHHHHH
A
polypeptide(L)
no
no
KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPC
SALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL
KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPC
SALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL
L,M
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Arabian camel
Camelus
Escherichia
sample
9838
Camelus dromedarius
562
Escherichia coli
WK6
plasmid
pHEN6
chicken
Gallus
sample
9031
Gallus gallus
1
3.56
65.19
VAPOR DIFFUSION, HANGING DROP
7.5
NaCl, Hepes, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
repository
Initial release
Version format compliance
Version format compliance
1
0
2005-10-04
1
1
2008-04-30
1
2
2011-07-13
CabLys3 in complex with hen egg white lysozyme
CabLys3 in complex with lysozyme
CabLys3 in complex with lysozyme
CabLys3 in complex with hen egg white lysozyme
N
RCSB
Y
RCSB
2005-05-11
REL
REL
HOH
water
HOH
1
3
HOH
HOH
143
A
HOH
2
3
HOH
HOH
144
A
HOH
3
3
HOH
HOH
145
A
HOH
4
3
HOH
HOH
146
A
HOH
5
3
HOH
HOH
147
A
HOH
6
3
HOH
HOH
148
A
HOH
7
3
HOH
HOH
149
A
HOH
8
3
HOH
HOH
150
A
HOH
9
3
HOH
HOH
151
A
HOH
10
3
HOH
HOH
152
A
HOH
11
3
HOH
HOH
153
A
HOH
12
3
HOH
HOH
154
A
HOH
13
3
HOH
HOH
155
A
HOH
14
3
HOH
HOH
156
A
HOH
15
3
HOH
HOH
157
A
HOH
17
3
HOH
HOH
158
A
HOH
47
3
HOH
HOH
159
A
HOH
50
3
HOH
HOH
160
A
HOH
16
3
HOH
HOH
130
L
HOH
18
3
HOH
HOH
131
L
HOH
19
3
HOH
HOH
132
L
HOH
20
3
HOH
HOH
133
L
HOH
21
3
HOH
HOH
134
L
HOH
22
3
HOH
HOH
135
L
HOH
23
3
HOH
HOH
136
L
HOH
24
3
HOH
HOH
137
L
HOH
25
3
HOH
HOH
138
L
HOH
26
3
HOH
HOH
139
L
HOH
27
3
HOH
HOH
140
L
HOH
48
3
HOH
HOH
141
L
HOH
28
3
HOH
HOH
130
M
HOH
29
3
HOH
HOH
131
M
HOH
30
3
HOH
HOH
132
M
HOH
31
3
HOH
HOH
133
M
HOH
32
3
HOH
HOH
134
M
HOH
33
3
HOH
HOH
135
M
HOH
34
3
HOH
HOH
136
M
HOH
35
3
HOH
HOH
137
M
HOH
36
3
HOH
HOH
138
M
HOH
37
3
HOH
HOH
139
M
HOH
38
3
HOH
HOH
140
M
HOH
39
3
HOH
HOH
141
M
HOH
40
3
HOH
HOH
142
M
HOH
41
3
HOH
HOH
143
M
HOH
42
3
HOH
HOH
144
M
HOH
43
3
HOH
HOH
145
M
HOH
44
3
HOH
HOH
146
M
HOH
45
3
HOH
HOH
147
M
HOH
46
3
HOH
HOH
148
M
HOH
49
3
HOH
HOH
149
M
GLN
1
n
1
GLN
1
A
VAL
2
n
2
VAL
2
A
GLN
3
n
3
GLN
3
A
LEU
4
n
4
LEU
4
A
VAL
5
n
5
VAL
5
A
GLU
6
n
6
GLU
6
A
SER
7
n
7
SER
7
A
GLY
8
n
8
GLY
8
A
GLY
9
n
9
GLY
9
A
GLY
10
n
10
GLY
10
A
SER
11
n
11
SER
11
A
VAL
12
n
12
VAL
12
A
GLN
13
n
13
GLN
13
A
ALA
14
n
14
ALA
14
A
GLY
15
n
15
GLY
15
A
GLY
16
n
16
GLY
16
A
SER
17
n
17
SER
17
A
LEU
18
n
18
LEU
18
A
ARG
19
n
19
ARG
19
A
LEU
20
n
20
LEU
20
A
SER
21
n
21
SER
21
A
CYS
22
n
22
CYS
22
A
THR
23
n
23
THR
23
A
ALA
24
n
24
ALA
24
A
SER
25
n
25
SER
25
A
GLY
26
n
26
GLY
26
A
TYR
27
n
27
TYR
27
A
THR
28
n
28
THR
28
A
ILE
29
n
29
ILE
29
A
GLY
30
n
30
GLY
30
A
PRO
31
n
31
PRO
31
A
TYR
32
n
32
TYR
32
A
CYS
33
n
33
CYS
33
A
MET
34
n
34
MET
34
A
GLY
35
n
35
GLY
35
A
TRP
36
n
36
TRP
36
A
PHE
37
n
37
PHE
37
A
ARG
38
n
38
ARG
38
A
GLN
39
n
39
GLN
39
A
ALA
40
n
40
ALA
40
A
PRO
41
n
41
PRO
41
A
GLY
42
n
42
GLY
42
A
GLY
43
n
43
GLY
43
A
GLU
44
n
44
GLU
44
A
ARG
45
n
45
ARG
45
A
GLU
46
n
46
GLU
46
A
ALA
47
n
47
ALA
47
A
VAL
48
n
48
VAL
48
A
ALA
49
n
49
ALA
49
A
ALA
50
n
50
ALA
50
A
ILE
51
n
51
ILE
51
A
ASN
52
n
52
ASN
52
A
MET
53
n
53
MET
53
A
GLY
54
n
54
GLY
54
A
GLY
55
n
55
GLY
55
A
GLY
56
n
56
GLY
56
A
ILE
57
n
57
ILE
57
A
THR
58
n
58
THR
58
A
TYR
59
n
59
TYR
59
A
TYR
60
n
60
TYR
60
A
ALA
61
n
61
ALA
61
A
ASP
62
n
62
ASP
62
A
SER
63
n
63
SER
63
A
VAL
64
n
64
VAL
64
A
LYS
65
n
65
LYS
65
A
GLY
66
n
66
GLY
66
A
ARG
67
n
67
ARG
67
A
PHE
68
n
68
PHE
68
A
THR
69
n
69
THR
69
A
ILE
70
n
70
ILE
70
A
SER
71
n
71
SER
71
A
ARG
72
n
72
ARG
72
A
ASP
73
n
73
ASP
73
A
ASN
74
n
74
ASN
74
A
ALA
75
n
75
ALA
75
A
LYS
76
n
76
LYS
76
A
ASN
77
n
77
ASN
77
A
THR
78
n
78
THR
78
A
VAL
79
n
79
VAL
79
A
THR
80
n
80
THR
80
A
LEU
81
n
81
LEU
81
A
GLN
82
n
82
GLN
82
A
MET
83
n
83
MET
83
A
ASN
84
n
84
ASN
84
A
SER
85
n
85
SER
85
A
LEU
86
n
86
LEU
86
A
LYS
87
n
87
LYS
87
A
PRO
88
n
88
PRO
88
A
GLU
89
n
89
GLU
89
A
ASP
90
n
90
ASP
90
A
THR
91
n
91
THR
91
A
ALA
92
n
92
ALA
92
A
MET
93
n
93
MET
93
A
TYR
94
n
94
TYR
94
A
TYR
95
n
95
TYR
95
A
CYS
96
n
96
CYS
96
A
ALA
97
n
97
ALA
97
A
ALA
98
n
98
ALA
98
A
ASP
99
n
99
ASP
99
A
SER
100
n
100
SER
100
A
THR
101
n
101
THR
101
A
ILE
102
n
102
ILE
102
A
TYR
103
n
103
TYR
103
A
ALA
104
n
104
ALA
104
A
SER
105
n
105
SER
105
A
TYR
106
n
106
TYR
106
A
TYR
107
n
107
TYR
107
A
GLU
108
n
108
GLU
108
A
CYS
109
n
109
CYS
109
A
GLY
110
n
110
GLY
110
A
HIS
111
n
111
HIS
111
A
GLY
112
n
112
GLY
112
A
LEU
113
n
113
LEU
113
A
SER
114
n
114
SER
114
A
THR
115
n
115
THR
115
A
GLY
116
n
116
GLY
116
A
GLY
117
n
117
GLY
117
A
TYR
118
n
118
TYR
118
A
GLY
119
n
119
GLY
119
A
TYR
120
n
120
TYR
120
A
ASP
121
n
121
ASP
121
A
SER
122
n
122
SER
122
A
TRP
123
n
123
TRP
123
A
GLY
124
n
124
GLY
124
A
GLN
125
n
125
GLN
125
A
GLY
126
n
126
GLY
126
A
THR
127
n
127
THR
127
A
GLN
128
n
128
GLN
128
A
VAL
129
n
129
VAL
129
A
THR
130
n
130
THR
130
A
VAL
131
n
131
VAL
131
A
SER
132
n
132
SER
132
A
SER
133
n
133
SER
133
A
n
134
134
A
n
135
135
A
n
136
136
A
n
137
137
A
n
138
138
A
n
139
139
A
n
140
140
A
n
141
141
A
n
142
142
A
LYS
1
n
1
LYS
1
L
VAL
2
n
2
VAL
2
L
PHE
3
n
3
PHE
3
L
GLY
4
n
4
GLY
4
L
ARG
5
n
5
ARG
5
L
CYS
6
n
6
CYS
6
L
GLU
7
n
7
GLU
7
L
LEU
8
n
8
LEU
8
L
ALA
9
n
9
ALA
9
L
ALA
10
n
10
ALA
10
L
ALA
11
n
11
ALA
11
L
MET
12
n
12
MET
12
L
LYS
13
n
13
LYS
13
L
ARG
14
n
14
ARG
14
L
HIS
15
n
15
HIS
15
L
GLY
16
n
16
GLY
16
L
LEU
17
n
17
LEU
17
L
ASP
18
n
18
ASP
18
L
ASN
19
n
19
ASN
19
L
TYR
20
n
20
TYR
20
L
ARG
21
n
21
ARG
21
L
GLY
22
n
22
GLY
22
L
TYR
23
n
23
TYR
23
L
SER
24
n
24
SER
24
L
LEU
25
n
25
LEU
25
L
GLY
26
n
26
GLY
26
L
ASN
27
n
27
ASN
27
L
TRP
28
n
28
TRP
28
L
VAL
29
n
29
VAL
29
L
CYS
30
n
30
CYS
30
L
ALA
31
n
31
ALA
31
L
ALA
32
n
32
ALA
32
L
LYS
33
n
33
LYS
33
L
PHE
34
n
34
PHE
34
L
GLU
35
n
35
GLU
35
L
SER
36
n
36
SER
36
L
ASN
37
n
37
ASN
37
L
PHE
38
n
38
PHE
38
L
ASN
39
n
39
ASN
39
L
THR
40
n
40
THR
40
L
GLN
41
n
41
GLN
41
L
ALA
42
n
42
ALA
42
L
THR
43
n
43
THR
43
L
ASN
44
n
44
ASN
44
L
ARG
45
n
45
ARG
45
L
ASN
46
n
46
ASN
46
L
THR
47
n
47
THR
47
L
ASP
48
n
48
ASP
48
L
GLY
49
n
49
GLY
49
L
SER
50
n
50
SER
50
L
THR
51
n
51
THR
51
L
ASP
52
n
52
ASP
52
L
TYR
53
n
53
TYR
53
L
GLY
54
n
54
GLY
54
L
ILE
55
n
55
ILE
55
L
LEU
56
n
56
LEU
56
L
GLN
57
n
57
GLN
57
L
ILE
58
n
58
ILE
58
L
ASN
59
n
59
ASN
59
L
SER
60
n
60
SER
60
L
ARG
61
n
61
ARG
61
L
TRP
62
n
62
TRP
62
L
TRP
63
n
63
TRP
63
L
CYS
64
n
64
CYS
64
L
ASN
65
n
65
ASN
65
L
ASP
66
n
66
ASP
66
L
GLY
67
n
67
GLY
67
L
ARG
68
n
68
ARG
68
L
THR
69
n
69
THR
69
L
PRO
70
n
70
PRO
70
L
GLY
71
n
71
GLY
71
L
SER
72
n
72
SER
72
L
ARG
73
n
73
ARG
73
L
ASN
74
n
74
ASN
74
L
LEU
75
n
75
LEU
75
L
CYS
76
n
76
CYS
76
L
ASN
77
n
77
ASN
77
L
ILE
78
n
78
ILE
78
L
PRO
79
n
79
PRO
79
L
CYS
80
n
80
CYS
80
L
SER
81
n
81
SER
81
L
ALA
82
n
82
ALA
82
L
LEU
83
n
83
LEU
83
L
LEU
84
n
84
LEU
84
L
SER
85
n
85
SER
85
L
SER
86
n
86
SER
86
L
ASP
87
n
87
ASP
87
L
ILE
88
n
88
ILE
88
L
THR
89
n
89
THR
89
L
ALA
90
n
90
ALA
90
L
SER
91
n
91
SER
91
L
VAL
92
n
92
VAL
92
L
ASN
93
n
93
ASN
93
L
CYS
94
n
94
CYS
94
L
ALA
95
n
95
ALA
95
L
LYS
96
n
96
LYS
96
L
LYS
97
n
97
LYS
97
L
ILE
98
n
98
ILE
98
L
VAL
99
n
99
VAL
99
L
SER
100
n
100
SER
100
L
ASP
101
n
101
ASP
101
L
GLY
102
n
102
GLY
102
L
ASN
103
n
103
ASN
103
L
GLY
104
n
104
GLY
104
L
MET
105
n
105
MET
105
L
ASN
106
n
106
ASN
106
L
ALA
107
n
107
ALA
107
L
TRP
108
n
108
TRP
108
L
VAL
109
n
109
VAL
109
L
ALA
110
n
110
ALA
110
L
TRP
111
n
111
TRP
111
L
ARG
112
n
112
ARG
112
L
ASN
113
n
113
ASN
113
L
ARG
114
n
114
ARG
114
L
CYS
115
n
115
CYS
115
L
LYS
116
n
116
LYS
116
L
GLY
117
n
117
GLY
117
L
THR
118
n
118
THR
118
L
ASP
119
n
119
ASP
119
L
VAL
120
n
120
VAL
120
L
GLN
121
n
121
GLN
121
L
ALA
122
n
122
ALA
122
L
TRP
123
n
123
TRP
123
L
ILE
124
n
124
ILE
124
L
ARG
125
n
125
ARG
125
L
GLY
126
n
126
GLY
126
L
CYS
127
n
127
CYS
127
L
ARG
128
n
128
ARG
128
L
LEU
129
n
129
LEU
129
L
LYS
1
n
1
LYS
1
M
VAL
2
n
2
VAL
2
M
PHE
3
n
3
PHE
3
M
GLY
4
n
4
GLY
4
M
ARG
5
n
5
ARG
5
M
CYS
6
n
6
CYS
6
M
GLU
7
n
7
GLU
7
M
LEU
8
n
8
LEU
8
M
ALA
9
n
9
ALA
9
M
ALA
10
n
10
ALA
10
M
ALA
11
n
11
ALA
11
M
MET
12
n
12
MET
12
M
LYS
13
n
13
LYS
13
M
ARG
14
n
14
ARG
14
M
HIS
15
n
15
HIS
15
M
GLY
16
n
16
GLY
16
M
LEU
17
n
17
LEU
17
M
ASP
18
n
18
ASP
18
M
ASN
19
n
19
ASN
19
M
TYR
20
n
20
TYR
20
M
ARG
21
n
21
ARG
21
M
GLY
22
n
22
GLY
22
M
TYR
23
n
23
TYR
23
M
SER
24
n
24
SER
24
M
LEU
25
n
25
LEU
25
M
GLY
26
n
26
GLY
26
M
ASN
27
n
27
ASN
27
M
TRP
28
n
28
TRP
28
M
VAL
29
n
29
VAL
29
M
CYS
30
n
30
CYS
30
M
ALA
31
n
31
ALA
31
M
ALA
32
n
32
ALA
32
M
LYS
33
n
33
LYS
33
M
PHE
34
n
34
PHE
34
M
GLU
35
n
35
GLU
35
M
SER
36
n
36
SER
36
M
ASN
37
n
37
ASN
37
M
PHE
38
n
38
PHE
38
M
ASN
39
n
39
ASN
39
M
THR
40
n
40
THR
40
M
GLN
41
n
41
GLN
41
M
ALA
42
n
42
ALA
42
M
THR
43
n
43
THR
43
M
ASN
44
n
44
ASN
44
M
ARG
45
n
45
ARG
45
M
ASN
46
n
46
ASN
46
M
THR
47
n
47
THR
47
M
ASP
48
n
48
ASP
48
M
GLY
49
n
49
GLY
49
M
SER
50
n
50
SER
50
M
THR
51
n
51
THR
51
M
ASP
52
n
52
ASP
52
M
TYR
53
n
53
TYR
53
M
GLY
54
n
54
GLY
54
M
ILE
55
n
55
ILE
55
M
LEU
56
n
56
LEU
56
M
GLN
57
n
57
GLN
57
M
ILE
58
n
58
ILE
58
M
ASN
59
n
59
ASN
59
M
SER
60
n
60
SER
60
M
ARG
61
n
61
ARG
61
M
TRP
62
n
62
TRP
62
M
TRP
63
n
63
TRP
63
M
CYS
64
n
64
CYS
64
M
ASN
65
n
65
ASN
65
M
ASP
66
n
66
ASP
66
M
GLY
67
n
67
GLY
67
M
ARG
68
n
68
ARG
68
M
THR
69
n
69
THR
69
M
PRO
70
n
70
PRO
70
M
GLY
71
n
71
GLY
71
M
SER
72
n
72
SER
72
M
ARG
73
n
73
ARG
73
M
ASN
74
n
74
ASN
74
M
LEU
75
n
75
LEU
75
M
CYS
76
n
76
CYS
76
M
ASN
77
n
77
ASN
77
M
ILE
78
n
78
ILE
78
M
PRO
79
n
79
PRO
79
M
CYS
80
n
80
CYS
80
M
SER
81
n
81
SER
81
M
ALA
82
n
82
ALA
82
M
LEU
83
n
83
LEU
83
M
LEU
84
n
84
LEU
84
M
SER
85
n
85
SER
85
M
SER
86
n
86
SER
86
M
ASP
87
n
87
ASP
87
M
ILE
88
n
88
ILE
88
M
THR
89
n
89
THR
89
M
ALA
90
n
90
ALA
90
M
SER
91
n
91
SER
91
M
VAL
92
n
92
VAL
92
M
ASN
93
n
93
ASN
93
M
CYS
94
n
94
CYS
94
M
ALA
95
n
95
ALA
95
M
LYS
96
n
96
LYS
96
M
LYS
97
n
97
LYS
97
M
ILE
98
n
98
ILE
98
M
VAL
99
n
99
VAL
99
M
SER
100
n
100
SER
100
M
ASP
101
n
101
ASP
101
M
GLY
102
n
102
GLY
102
M
ASN
103
n
103
ASN
103
M
GLY
104
n
104
GLY
104
M
MET
105
n
105
MET
105
M
ASN
106
n
106
ASN
106
M
ALA
107
n
107
ALA
107
M
TRP
108
n
108
TRP
108
M
VAL
109
n
109
VAL
109
M
ALA
110
n
110
ALA
110
M
TRP
111
n
111
TRP
111
M
ARG
112
n
112
ARG
112
M
ASN
113
n
113
ASN
113
M
ARG
114
n
114
ARG
114
M
CYS
115
n
115
CYS
115
M
LYS
116
n
116
LYS
116
M
GLY
117
n
117
GLY
117
M
THR
118
n
118
THR
118
M
ASP
119
n
119
ASP
119
M
VAL
120
n
120
VAL
120
M
GLN
121
n
121
GLN
121
M
ALA
122
n
122
ALA
122
M
TRP
123
n
123
TRP
123
M
ILE
124
n
124
ILE
124
M
ARG
125
n
125
ARG
125
M
GLY
126
n
126
GLY
126
M
CYS
127
n
127
CYS
127
M
ARG
128
n
128
ARG
128
M
LEU
129
n
129
LEU
129
M
author_and_software_defined_assembly
PISA
2
dimeric
author_and_software_defined_assembly
PISA
1
monomeric
1470
-9
11100
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
SER
7
A
N
SER
7
A
O
SER
21
A
O
SER
21
A
N
LEU
20
A
N
LEU
20
A
O
LEU
81
A
O
LEU
81
A
O
GLN
82
A
O
GLN
82
A
N
THR
69
A
N
THR
69
A
N
GLY
10
A
N
GLY
10
A
O
THR
130
A
O
THR
130
A
O
THR
127
A
O
THR
127
A
N
TYR
94
A
N
TYR
94
A
O
TYR
95
A
O
TYR
95
A
N
PHE
37
A
N
PHE
37
A
N
MET
34
A
N
MET
34
A
O
ILE
51
A
O
ILE
51
A
N
ALA
50
A
N
ALA
50
A
O
TYR
59
A
O
TYR
59
A
N
GLY
10
A
N
GLY
10
A
O
THR
130
A
O
THR
130
A
O
THR
127
A
O
THR
127
A
N
TYR
94
A
N
TYR
94
A
N
ALA
98
A
N
ALA
98
A
O
SER
122
A
O
SER
122
L
N
ASN
44
B
N
ASN
44
L
O
ASP
52
B
O
ASP
52
L
N
TYR
53
B
N
TYR
53
L
O
ILE
58
B
O
ILE
58
M
N
ASN
44
C
N
ASN
44
M
O
ASP
52
C
O
ASP
52
M
N
TYR
53
C
N
TYR
53
M
O
ILE
58
C
O
ILE
58
M
N
ASN
65
C
N
ASN
65
M
O
ILE
78
C
O
ILE
78
1
A
N
GLN
1
A
N
GLN
1
1
Y
1
A
CA
GLN
1
A
CA
GLN
1
1
Y
1
A
O
GLN
1
A
O
GLN
1
1
Y
1
A
CB
GLN
1
A
CB
GLN
1
1
Y
1
A
CG
GLN
1
A
CG
GLN
1
1
Y
1
A
CD
GLN
1
A
CD
GLN
1
1
Y
1
A
OE1
GLN
1
A
OE1
GLN
1
1
Y
1
A
NE2
GLN
1
A
NE2
GLN
1
1
Y
1
A
CG
TYR
27
A
CG
TYR
27
1
Y
1
A
CD1
TYR
27
A
CD1
TYR
27
1
Y
1
A
CD2
TYR
27
A
CD2
TYR
27
1
Y
1
A
CE1
TYR
27
A
CE1
TYR
27
1
Y
1
A
CE2
TYR
27
A
CE2
TYR
27
1
Y
1
A
CZ
TYR
27
A
CZ
TYR
27
1
Y
1
A
OH
TYR
27
A
OH
TYR
27
1
Y
1
A
CD
LYS
76
A
CD
LYS
76
1
Y
1
A
CE
LYS
76
A
CE
LYS
76
1
Y
1
A
NZ
LYS
76
A
NZ
LYS
76
1
Y
1
A
CB
SER
85
A
CB
SER
85
1
Y
1
A
OG
SER
85
A
OG
SER
85
1
Y
1
A
CD1
TYR
118
A
CD1
TYR
118
1
Y
1
A
CD2
TYR
118
A
CD2
TYR
118
1
Y
1
A
CE1
TYR
118
A
CE1
TYR
118
1
Y
1
A
CE2
TYR
118
A
CE2
TYR
118
1
Y
1
A
CZ
TYR
118
A
CZ
TYR
118
1
Y
1
A
OH
TYR
118
A
OH
TYR
118
1
Y
1
L
CE
LYS
33
B
CE
LYS
33
1
Y
1
L
NZ
LYS
33
B
NZ
LYS
33
1
Y
1
L
NE
ARG
73
B
NE
ARG
73
1
Y
1
L
CZ
ARG
73
B
CZ
ARG
73
1
Y
1
L
NH1
ARG
73
B
NH1
ARG
73
1
Y
1
L
NH2
ARG
73
B
NH2
ARG
73
1
Y
1
L
CE
LYS
116
B
CE
LYS
116
1
Y
1
L
NZ
LYS
116
B
NZ
LYS
116
1
Y
1
L
CG
ASP
119
B
CG
ASP
119
1
Y
1
L
OD1
ASP
119
B
OD1
ASP
119
1
Y
1
L
OD2
ASP
119
B
OD2
ASP
119
1
Y
1
L
CG
ARG
128
B
CG
ARG
128
1
Y
1
L
CD
ARG
128
B
CD
ARG
128
1
Y
1
L
NE
ARG
128
B
NE
ARG
128
1
Y
1
L
CZ
ARG
128
B
CZ
ARG
128
1
Y
1
L
NH1
ARG
128
B
NH1
ARG
128
1
Y
1
L
NH2
ARG
128
B
NH2
ARG
128
1
Y
1
M
CE
LYS
33
C
CE
LYS
33
1
Y
1
M
NZ
LYS
33
C
NZ
LYS
33
1
Y
1
M
CG
ARG
112
C
CG
ARG
112
1
Y
1
M
CD
ARG
112
C
CD
ARG
112
1
Y
1
M
NE
ARG
112
C
NE
ARG
112
1
Y
1
M
CZ
ARG
112
C
CZ
ARG
112
1
Y
1
M
NH1
ARG
112
C
NH1
ARG
112
1
Y
1
M
NH2
ARG
112
C
NH2
ARG
112
1
Y
1
M
CG
ARG
128
C
CG
ARG
128
1
Y
1
M
CD
ARG
128
C
CD
ARG
128
1
Y
1
M
NE
ARG
128
C
NE
ARG
128
1
Y
1
M
CZ
ARG
128
C
CZ
ARG
128
1
Y
1
M
NH1
ARG
128
C
NH1
ARG
128
1
Y
1
M
NH2
ARG
128
C
NH2
ARG
128
1
Y
1
A
ARG
134
A
ARG
134
1
Y
1
A
GLY
135
A
GLY
135
1
Y
1
A
ARG
136
A
ARG
136
1
Y
1
A
HIS
137
A
HIS
137
1
Y
1
A
HIS
138
A
HIS
138
1
Y
1
A
HIS
139
A
HIS
139
1
Y
1
A
HIS
140
A
HIS
140
1
Y
1
A
HIS
141
A
HIS
141
1
Y
1
A
HIS
142
A
HIS
142
1
Y
1
A
VAL
2
-119.92
58.75
1
A
TYR
27
39.24
81.98
1
A
THR
28
-157.64
-89.96
1
A
ARG
67
-108.43
-60.47
1
A
ASN
74
-58.55
-71.88
1
A
ALA
75
-30.71
131.37
1
A
ASN
77
71.58
33.20
1
A
ALA
92
171.50
-177.53
1
A
THR
115
-81.09
49.27
1
L
PHE
3
-57.55
172.47
1
L
ARG
5
-27.17
-64.50
1
L
ASN
19
71.28
40.54
1
L
GLU
35
-93.70
-66.36
1
L
TRP
62
-131.41
-48.44
1
L
SER
72
-24.43
149.27
1
L
SER
85
-51.05
172.51
1
L
ALA
90
-52.11
-72.61
1
L
ASP
119
-52.22
95.91
1
M
ARG
5
-40.94
-74.01
1
M
ARG
21
59.74
17.74
1
M
SER
36
-149.54
15.11
1
M
ASN
44
-170.75
118.94
1
M
THR
47
-67.80
8.73
1
M
TRP
62
-134.15
-43.85
1
M
SER
72
-36.89
148.82
1
M
ASN
113
-88.16
-72.46
1
M
CYS
115
-99.08
-64.06
0.254
0.206
0.2061
0.2061
3.00
18.0
1041
12811
12811
8.1
random
1
THROUGHOUT
0
MOLECULAR REPLACEMENT
Engh & Huber
3.00
18.0
50
2975
0
0
2925
0.007378
1.54387
3.00
18.0
1ZMY
12811
12811
0
0
0.223
1
11.8
9.75
99.5
0.713
3.00
3.10
3.3
1270
100
data reduction
DENZO
data scaling
SCALEPACK
phasing
PHASER
refinement
CNS
1.0
Antibody cabbcII-10:lys3/Lysozyme C (E.C.3.2.1.17)
cAbBCII-10 VHH framework with CDR loops of cAbLys3 grafted on it and in complex with hen egg white lysozyme
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
3
N
N
The assymetric unit contains one VHH:lysozyme complex as well as one free lysozyme molecule
A
LYS
87
A
LYS
87
HELX_P
A
THR
91
A
THR
91
5
1
5
A
GLU
108
A
GLU
108
HELX_P
A
THR
115
A
THR
115
1
2
8
L
GLY
4
B
GLY
4
HELX_P
L
HIS
15
B
HIS
15
1
3
12
L
ASN
19
B
ASN
19
HELX_P
L
TYR
23
B
TYR
23
5
4
5
L
SER
24
B
SER
24
HELX_P
L
SER
36
B
SER
36
1
5
13
L
PRO
79
B
PRO
79
HELX_P
L
SER
85
B
SER
85
5
6
7
L
ILE
88
B
ILE
88
HELX_P
L
ASP
101
B
ASP
101
1
7
14
L
GLY
104
B
GLY
104
HELX_P
L
ALA
107
B
ALA
107
5
8
4
L
TRP
108
B
TRP
108
HELX_P
L
CYS
115
B
CYS
115
1
9
8
L
ASP
119
B
ASP
119
HELX_P
L
ILE
124
B
ILE
124
5
10
6
M
GLY
4
C
GLY
4
HELX_P
M
HIS
15
C
HIS
15
1
11
12
M
ASN
19
C
ASN
19
HELX_P
M
TYR
23
C
TYR
23
5
12
5
M
SER
24
C
SER
24
HELX_P
M
ASN
37
C
ASN
37
1
13
14
M
SER
81
C
SER
81
HELX_P
M
SER
85
C
SER
85
5
14
5
M
ILE
88
C
ILE
88
HELX_P
M
SER
100
C
SER
100
1
15
13
M
ASN
103
C
ASN
103
HELX_P
M
ALA
107
C
ALA
107
5
16
5
M
TRP
108
C
TRP
108
HELX_P
M
CYS
115
C
CYS
115
1
17
8
M
ASP
119
C
ASP
119
HELX_P
M
ARG
125
C
ARG
125
5
18
7
disulf
2.024
A
CYS
22
A
SG
CYS
22
1_555
A
CYS
96
A
SG
CYS
96
1_555
disulf
2.856
A
CYS
33
A
SG
CYS
33
1_555
A
CYS
109
A
SG
CYS
109
1_555
disulf
2.032
L
CYS
6
B
SG
CYS
6
1_555
L
CYS
127
B
SG
CYS
127
1_555
disulf
2.036
L
CYS
30
B
SG
CYS
30
1_555
L
CYS
115
B
SG
CYS
115
1_555
disulf
2.037
L
CYS
64
B
SG
CYS
64
1_555
L
CYS
80
B
SG
CYS
80
1_555
disulf
2.035
L
CYS
76
B
SG
CYS
76
1_555
L
CYS
94
B
SG
CYS
94
1_555
disulf
2.034
M
CYS
6
C
SG
CYS
6
1_555
M
CYS
127
C
SG
CYS
127
1_555
disulf
2.029
M
CYS
30
C
SG
CYS
30
1_555
M
CYS
115
C
SG
CYS
115
1_555
disulf
2.027
M
CYS
64
C
SG
CYS
64
1_555
M
CYS
80
C
SG
CYS
80
1_555
disulf
2.031
M
CYS
76
C
SG
CYS
76
1_555
M
CYS
94
C
SG
CYS
94
1_555
IMMUNE SYSTEM/HYDROLASE
VHH; antibody; immune system; CDR grafting, IMMUNE SYSTEM-HYDROLASE COMPLEX
A
GLY
30
A
GLY
30
1
A
PRO
31
A
PRO
31
0.12
LYSC_CHICK
UNP
2
19
P00698
KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPC
SALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL
1ZMY
PDB
1
1ZMY
19
147
1ZMY
1
129
P00698
L
1
1
129
19
147
1ZMY
1
129
P00698
M
1
1
129
1
142
1ZMY
1
142
1ZMY
A
2
1
142
4
6
4
3
3
2
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
A
LEU
4
A
LEU
4
A
GLY
8
A
GLY
8
A
LEU
18
A
LEU
18
A
ALA
24
A
ALA
24
A
THR
78
A
THR
78
A
MET
83
A
MET
83
A
THR
69
A
THR
69
A
ARG
72
A
ARG
72
A
GLY
10
A
GLY
10
A
GLN
13
A
GLN
13
A
THR
127
A
THR
127
A
SER
132
A
SER
132
A
ALA
92
A
ALA
92
A
ASP
99
A
ASP
99
A
CYS
33
A
CYS
33
A
GLN
39
A
GLN
39
A
GLU
46
A
GLU
46
A
ASN
52
A
ASN
52
A
THR
58
A
THR
58
A
TYR
60
A
TYR
60
A
GLY
10
A
GLY
10
A
GLN
13
A
GLN
13
A
THR
127
A
THR
127
A
SER
132
A
SER
132
A
ALA
92
A
ALA
92
A
ASP
99
A
ASP
99
A
SER
122
A
SER
122
A
TRP
123
A
TRP
123
L
THR
43
B
THR
43
L
ARG
45
B
ARG
45
L
THR
51
B
THR
51
L
TYR
53
B
TYR
53
L
ILE
58
B
ILE
58
L
ASN
59
B
ASN
59
M
THR
43
C
THR
43
M
ARG
45
C
ARG
45
M
THR
51
C
THR
51
M
TYR
53
C
TYR
53
M
ILE
58
C
ILE
58
M
ASN
59
C
ASN
59
M
CYS
64
C
CYS
64
M
ASN
65
C
ASN
65
M
ILE
78
C
ILE
78
M
PRO
79
C
PRO
79
170
hexagonal
P 65