0.030877 0.000000 0.000000 0.000000 0.018984 0.000000 0.000000 0.000000 0.014852 0.00000 0.00000 0.00000 Campestre, C. Agamennone, M. Tortorella, P. Preziuso, S. Biasone, A. Gavuzzo, E. Pochetti, G. Mazza, F. Tschesche, H. Gallina, C. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 32.387 52.675 67.331 C17 H17 N3 O3 311.335 N-{2-[(4'-CYANO-1,1'-BIPHENYL-4-YL)OXY]ETHYL}-N'-HYDROXY-N-METHYLUREA non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Ca 2 40.078 CALCIUM ION non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer Y 1 N C Y 2 N C Y 3 N C Y 4 N C Y 5 N C Y 6 N C Y 7 N C Y 8 N C Y 9 N C Y 10 N C Y 11 N C Y 12 N C N 13 N C N 14 N N N 15 N O N 16 N C N 17 N C N 18 N N N 19 N C N 20 N C N 21 N O N 22 N N N 23 N O N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N O N 47 N H N 48 N H N 49 N H N 50 N H N 51 N H N 52 N H N 53 N H N 54 N N N 55 S C N 56 N C N 57 N O N 58 N C N 59 N C N 60 N C N 61 N N N 62 N C N 63 N N N 64 N N N 65 N O N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 N N N 82 S C N 83 N C N 84 N O N 85 N C N 86 N C N 87 N O N 88 N N N 89 N O N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N N N 99 S C N 100 N C N 101 N O N 102 N C N 103 N C N 104 N O N 105 N O N 106 N O N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N CA N 115 N N N 116 S C N 117 N C N 118 N O N 119 N C N 120 N C N 121 N C N 122 N O N 123 N N N 124 N O N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N N N 136 S C N 137 N C N 138 N O N 139 N C N 140 N C N 141 N C N 142 N O N 143 N O N 144 N O N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N N N 155 N C N 156 N C N 157 N O N 158 N O N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N N N 165 S C N 166 N C N 167 N O N 168 N C Y 169 N C Y 170 N N Y 171 N C Y 172 N C Y 173 N N N 174 N O N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N O N 186 N H N 187 N H N 188 N N N 189 S C N 190 N C N 191 N O N 192 S C N 193 N C N 194 N C N 195 N C N 196 N O N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N N N 211 S C N 212 N C N 213 N O N 214 N C N 215 N C N 216 N C N 217 N C N 218 N O N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N N N 233 S C N 234 N C N 235 N O N 236 N C N 237 N C N 238 N C N 239 N C N 240 N N N 241 N O N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N N N 258 S C N 259 N C N 260 N O N 261 N C N 262 N C N 263 N S N 264 N C N 265 N O N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N N N 278 S C N 279 N C N 280 N O N 281 N C Y 282 N C Y 283 N C Y 284 N C Y 285 N C Y 286 N C Y 287 N C N 288 N O N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N N N 301 S C N 302 N C N 303 N O N 304 N C N 305 N C N 306 N C N 307 N O N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N N N 318 S C N 319 N C N 320 N O N 321 N C N 322 N O N 323 N O N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N N N 332 S C N 333 N C N 334 N O N 335 R C N 336 N O N 337 N C N 338 N O N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N N N 349 S C N 350 N C N 351 N O N 352 N C Y 353 N C Y 354 N C Y 355 N C Y 356 N N Y 357 N C Y 358 N C Y 359 N C Y 360 N C Y 361 N C N 362 N O N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N N N 376 S C N 377 N C N 378 N O N 379 N C Y 380 N C Y 381 N C Y 382 N C Y 383 N C Y 384 N C Y 385 N C N 386 N O N 387 N O N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N N N 400 S C N 401 N C N 402 N O N 403 N C N 404 N C N 405 N C N 406 N O N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N ZN Y 1 N doub Y 2 N sing N 3 N sing Y 4 N sing N 5 N sing Y 6 N doub N 7 N sing Y 8 N sing N 9 N sing Y 10 N doub N 11 N sing Y 12 N sing Y 13 N doub Y 14 N sing Y 15 N sing N 16 N sing Y 17 N doub N 18 N sing Y 19 N sing N 20 N sing Y 21 N doub N 22 N sing N 23 N sing N 24 N trip N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N doub N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N doub N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N doub N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N doub N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N doub N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N doub N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N doub N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N doub N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N doub N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N doub N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N doub N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N doub N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N doub N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N doub N 164 N sing N 165 N sing N 166 N sing N 167 N sing Y 168 N sing Y 169 N doub Y 170 N doub N 171 N sing Y 172 N sing N 173 N sing Y 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N doub N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N doub N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N doub N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N doub N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N doub N 272 N sing N 273 N sing N 274 N sing N 275 N sing Y 276 N doub Y 277 N sing Y 278 N sing N 279 N sing Y 280 N doub N 281 N sing Y 282 N doub N 283 N sing Y 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N doub N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N doub N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N doub N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing Y 345 N doub Y 346 N sing Y 347 N sing N 348 N sing Y 349 N doub Y 350 N sing Y 351 N sing N 352 N sing Y 353 N sing Y 354 N doub N 355 N sing Y 356 N doub N 357 N sing Y 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N doub N 369 N sing N 370 N sing N 371 N sing N 372 N sing Y 373 N doub Y 374 N sing Y 375 N sing N 376 N sing Y 377 N doub N 378 N sing Y 379 N doub N 380 N sing Y 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N doub N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing UK Bioorg.Med.Chem.Lett. BMCLE8 1127 0960-894X 16 20 24 10.1016/j.bmcl.2005.09.057 16242329 N-Hydroxyurea as zinc binding group in matrix metalloproteinase inhibition: Mode of binding in a complex with MMP-8. 2006 NE Curr.Med.Chem. 0929-8673 9 1631 1653 12171558 Hydroxamic acids as pharmacological agents. 2002 US Biochemistry BICHAW 0033 0006-2960 34 14012 14020 10.1021/bi00043a007 7577999 Structure determination and analysis of human neutrophil collagenase complexed with a hydroxamate inhibitor. 1995 US J.Am.Chem.Soc. JACSAT 0004 0002-7863 119 5818 5827 10.1021/ja9702778 Discovery of potent non peptide inhibitors of stromelysin using SAR by NMR. 1997 UK Bioorg.Med.Chem.Lett. BMCLE8 1127 0960-894X 11 1553 1556 10.1016/S0960-894X(01)00031-2 11412979 Biaryl ether retrohydroxamates as potent, long-lived, orally bioavailable MMP inhibitors. 2001 10.2210/pdb1zp5/pdb pdb_00001zp5 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100.0 1 CCD 2004-05-18 MARRESEARCH graphite SINGLE WAVELENGTH M x-ray 1 1.00 1.0 5.2R ELETTRA 1.00 SYNCHROTRON ELETTRA BEAMLINE 5.2R 18111.744 Neutrophil collagenase 3.4.24.34 Catalytic domain (80-242) 1 man polymer 40.078 CALCIUM ION 2 syn non-polymer 65.409 ZINC ION 2 syn non-polymer 311.335 N-{2-[(4'-CYANO-1,1'-BIPHENYL-4-YL)OXY]ETHYL}-N'-HYDROXY-N-METHYLUREA 1 syn non-polymer 18.015 water 125 nat water Matrix metalloproteinase-8, MMP-8, PMNL collagenase, PMNL-CL no no MLTPGNPKWERTNLTYRIRNYTPQLSEAEVERAIKDAFELWSVASPLIFTRISQGEADINIAFYQRDHGDNSPFDGPNGI LAHAFQPGQGIGGDAHFDAEETWTNTSANYNLFLVAAHEFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQA IYG MLTPGNPKWERTNLTYRIRNYTPQLSEAEVERAIKDAFELWSVASPLIFTRISQGEADINIAFYQRDHGDNSPFDGPNGI LAHAFQPGQGIGGDAHFDAEETWTNTSANYNLFLVAAHEFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQA IYG A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia Escherichia coli sample MMP8, CLG1 9606 Homo sapiens 511693 Escherichia coli BL21 BL21 plasmid pSVB30 1 1.57 20.83 VAPOR DIFFUSION, HANGING DROP 6.0 PEG6000, MES/NAOH, Na Phosphate, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 software citation_author chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn struct_site repository Initial release Version format compliance Version format compliance Refinement description Database references Data collection Database references Derived calculations Refinement description 1 0 2005-12-06 1 1 2008-04-30 1 2 2011-07-13 1 3 2017-10-11 1 4 2018-01-24 1 5 2023-08-23 _citation_author.name _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2005-05-16 REL REL CA CALCIUM ION ZN ZINC ION 2NI N-{2-[(4'-CYANO-1,1'-BIPHENYL-4-YL)OXY]ETHYL}-N'-HYDROXY-N-METHYLUREA HOH water 1I76 PDB ENTRY 1I76 PDB experimental model CA 996 2 CA CA 996 A CA 997 2 CA CA 997 A ZN 998 3 ZN ZN 998 A ZN 999 3 ZN ZN 999 A 2NI 128 4 2NI 2NI 1000 A HOH 1 5 HOH HOH 1001 A HOH 2 5 HOH HOH 1002 A HOH 3 5 HOH HOH 1003 A HOH 4 5 HOH HOH 1004 A HOH 5 5 HOH HOH 1005 A HOH 6 5 HOH HOH 1006 A HOH 7 5 HOH HOH 1007 A HOH 8 5 HOH HOH 1008 A HOH 9 5 HOH HOH 1009 A HOH 10 5 HOH HOH 1010 A HOH 11 5 HOH HOH 1011 A HOH 12 5 HOH HOH 1012 A HOH 13 5 HOH HOH 1013 A HOH 14 5 HOH HOH 1014 A HOH 15 5 HOH HOH 1015 A HOH 16 5 HOH HOH 1016 A HOH 17 5 HOH HOH 1017 A HOH 18 5 HOH HOH 1018 A HOH 19 5 HOH HOH 1019 A HOH 20 5 HOH HOH 1020 A HOH 21 5 HOH HOH 1021 A HOH 22 5 HOH HOH 1022 A HOH 23 5 HOH HOH 1023 A HOH 24 5 HOH HOH 1024 A HOH 25 5 HOH HOH 1025 A HOH 26 5 HOH HOH 1026 A HOH 27 5 HOH HOH 1027 A HOH 28 5 HOH HOH 1028 A HOH 29 5 HOH HOH 1029 A HOH 30 5 HOH HOH 1030 A HOH 31 5 HOH HOH 1031 A HOH 32 5 HOH HOH 1032 A HOH 33 5 HOH HOH 1033 A HOH 34 5 HOH HOH 1034 A HOH 35 5 HOH HOH 1035 A HOH 36 5 HOH HOH 1036 A HOH 37 5 HOH HOH 1037 A HOH 38 5 HOH HOH 1038 A HOH 39 5 HOH HOH 1039 A HOH 40 5 HOH HOH 1040 A HOH 41 5 HOH HOH 1041 A HOH 42 5 HOH HOH 1042 A HOH 43 5 HOH HOH 1043 A HOH 44 5 HOH HOH 1044 A HOH 45 5 HOH HOH 1045 A HOH 46 5 HOH HOH 1046 A HOH 47 5 HOH HOH 1047 A HOH 48 5 HOH HOH 1048 A HOH 49 5 HOH HOH 1049 A HOH 50 5 HOH HOH 1050 A HOH 51 5 HOH HOH 1051 A HOH 52 5 HOH HOH 1052 A HOH 53 5 HOH HOH 1053 A HOH 54 5 HOH HOH 1054 A HOH 55 5 HOH HOH 1055 A HOH 56 5 HOH HOH 1056 A HOH 57 5 HOH HOH 1057 A HOH 58 5 HOH HOH 1058 A HOH 59 5 HOH HOH 1059 A HOH 60 5 HOH HOH 1060 A HOH 61 5 HOH HOH 1061 A HOH 62 5 HOH HOH 1062 A HOH 63 5 HOH HOH 1063 A HOH 64 5 HOH HOH 1064 A HOH 65 5 HOH HOH 1065 A HOH 66 5 HOH HOH 1066 A HOH 67 5 HOH HOH 1067 A HOH 68 5 HOH HOH 1068 A HOH 69 5 HOH HOH 1069 A HOH 70 5 HOH HOH 1070 A HOH 71 5 HOH HOH 1071 A HOH 72 5 HOH HOH 1072 A HOH 73 5 HOH HOH 1073 A HOH 74 5 HOH HOH 1074 A HOH 75 5 HOH HOH 1075 A HOH 76 5 HOH HOH 1076 A HOH 77 5 HOH HOH 1077 A HOH 78 5 HOH HOH 1078 A HOH 79 5 HOH HOH 1079 A HOH 80 5 HOH HOH 1080 A HOH 81 5 HOH HOH 1081 A HOH 82 5 HOH HOH 1082 A HOH 83 5 HOH HOH 1083 A HOH 84 5 HOH HOH 1084 A HOH 85 5 HOH HOH 1085 A HOH 86 5 HOH HOH 1086 A HOH 87 5 HOH HOH 1087 A HOH 88 5 HOH HOH 1088 A HOH 89 5 HOH HOH 1089 A HOH 107 5 HOH HOH 1090 A HOH 91 5 HOH HOH 1091 A HOH 92 5 HOH HOH 1092 A HOH 93 5 HOH HOH 1093 A HOH 94 5 HOH HOH 1094 A HOH 95 5 HOH HOH 1095 A HOH 96 5 HOH HOH 1096 A HOH 97 5 HOH HOH 1097 A HOH 98 5 HOH HOH 1098 A HOH 99 5 HOH HOH 1099 A HOH 100 5 HOH HOH 1100 A HOH 101 5 HOH HOH 1101 A HOH 102 5 HOH HOH 1102 A HOH 103 5 HOH HOH 1103 A HOH 104 5 HOH HOH 1104 A HOH 105 5 HOH HOH 1105 A HOH 106 5 HOH HOH 1106 A HOH 108 5 HOH HOH 1107 A HOH 109 5 HOH HOH 1108 A HOH 110 5 HOH HOH 1109 A HOH 111 5 HOH HOH 1110 A HOH 112 5 HOH HOH 1111 A HOH 113 5 HOH HOH 1112 A HOH 114 5 HOH HOH 1113 A HOH 115 5 HOH HOH 1114 A HOH 116 5 HOH HOH 1115 A HOH 117 5 HOH HOH 1116 A HOH 118 5 HOH HOH 1117 A HOH 119 5 HOH HOH 1118 A HOH 120 5 HOH HOH 1119 A HOH 121 5 HOH HOH 1120 A HOH 122 5 HOH HOH 1121 A HOH 123 5 HOH HOH 1122 A HOH 124 5 HOH HOH 1123 A HOH 125 5 HOH HOH 1124 A HOH 126 5 HOH HOH 1125 A MET 80 n 1 MET 80 A LEU 81 n 2 LEU 81 A THR 82 n 3 THR 82 A PRO 83 n 4 PRO 83 A GLY 84 n 5 GLY 84 A ASN 85 n 6 ASN 85 A PRO 86 n 7 PRO 86 A LYS 87 n 8 LYS 87 A TRP 88 n 9 TRP 88 A GLU 89 n 10 GLU 89 A ARG 90 n 11 ARG 90 A THR 91 n 12 THR 91 A ASN 92 n 13 ASN 92 A LEU 93 n 14 LEU 93 A THR 94 n 15 THR 94 A TYR 95 n 16 TYR 95 A ARG 96 n 17 ARG 96 A ILE 97 n 18 ILE 97 A ARG 98 n 19 ARG 98 A ASN 99 n 20 ASN 99 A TYR 100 n 21 TYR 100 A THR 101 n 22 THR 101 A PRO 102 n 23 PRO 102 A GLN 103 n 24 GLN 103 A LEU 104 n 25 LEU 104 A SER 105 n 26 SER 105 A GLU 106 n 27 GLU 106 A ALA 107 n 28 ALA 107 A GLU 108 n 29 GLU 108 A VAL 109 n 30 VAL 109 A GLU 110 n 31 GLU 110 A ARG 111 n 32 ARG 111 A ALA 112 n 33 ALA 112 A ILE 113 n 34 ILE 113 A LYS 114 n 35 LYS 114 A ASP 115 n 36 ASP 115 A ALA 116 n 37 ALA 116 A PHE 117 n 38 PHE 117 A GLU 118 n 39 GLU 118 A LEU 119 n 40 LEU 119 A TRP 120 n 41 TRP 120 A SER 121 n 42 SER 121 A VAL 122 n 43 VAL 122 A ALA 123 n 44 ALA 123 A SER 124 n 45 SER 124 A PRO 125 n 46 PRO 125 A LEU 126 n 47 LEU 126 A ILE 127 n 48 ILE 127 A PHE 128 n 49 PHE 128 A THR 129 n 50 THR 129 A ARG 130 n 51 ARG 130 A ILE 131 n 52 ILE 131 A SER 132 n 53 SER 132 A GLN 133 n 54 GLN 133 A GLY 134 n 55 GLY 134 A GLU 135 n 56 GLU 135 A ALA 136 n 57 ALA 136 A ASP 137 n 58 ASP 137 A ILE 138 n 59 ILE 138 A ASN 139 n 60 ASN 139 A ILE 140 n 61 ILE 140 A ALA 141 n 62 ALA 141 A PHE 142 n 63 PHE 142 A TYR 143 n 64 TYR 143 A GLN 144 n 65 GLN 144 A ARG 145 n 66 ARG 145 A ASP 146 n 67 ASP 146 A HIS 147 n 68 HIS 147 A GLY 148 n 69 GLY 148 A ASP 149 n 70 ASP 149 A ASN 150 n 71 ASN 150 A SER 151 n 72 SER 151 A PRO 152 n 73 PRO 152 A PHE 153 n 74 PHE 153 A ASP 154 n 75 ASP 154 A GLY 155 n 76 GLY 155 A PRO 156 n 77 PRO 156 A ASN 157 n 78 ASN 157 A GLY 158 n 79 GLY 158 A ILE 159 n 80 ILE 159 A LEU 160 n 81 LEU 160 A ALA 161 n 82 ALA 161 A HIS 162 n 83 HIS 162 A ALA 163 n 84 ALA 163 A PHE 164 n 85 PHE 164 A GLN 165 n 86 GLN 165 A PRO 166 n 87 PRO 166 A GLY 167 n 88 GLY 167 A GLN 168 n 89 GLN 168 A GLY 169 n 90 GLY 169 A ILE 170 n 91 ILE 170 A GLY 171 n 92 GLY 171 A GLY 172 n 93 GLY 172 A ASP 173 n 94 ASP 173 A ALA 174 n 95 ALA 174 A HIS 175 n 96 HIS 175 A PHE 176 n 97 PHE 176 A ASP 177 n 98 ASP 177 A ALA 178 n 99 ALA 178 A GLU 179 n 100 GLU 179 A GLU 180 n 101 GLU 180 A THR 181 n 102 THR 181 A TRP 182 n 103 TRP 182 A THR 183 n 104 THR 183 A ASN 184 n 105 ASN 184 A THR 185 n 106 THR 185 A SER 186 n 107 SER 186 A ALA 187 n 108 ALA 187 A ASN 188 n 109 ASN 188 A TYR 189 n 110 TYR 189 A ASN 190 n 111 ASN 190 A LEU 191 n 112 LEU 191 A PHE 192 n 113 PHE 192 A LEU 193 n 114 LEU 193 A VAL 194 n 115 VAL 194 A ALA 195 n 116 ALA 195 A ALA 196 n 117 ALA 196 A HIS 197 n 118 HIS 197 A GLU 198 n 119 GLU 198 A PHE 199 n 120 PHE 199 A GLY 200 n 121 GLY 200 A HIS 201 n 122 HIS 201 A SER 202 n 123 SER 202 A LEU 203 n 124 LEU 203 A GLY 204 n 125 GLY 204 A LEU 205 n 126 LEU 205 A ALA 206 n 127 ALA 206 A HIS 207 n 128 HIS 207 A SER 208 n 129 SER 208 A SER 209 n 130 SER 209 A ASP 210 n 131 ASP 210 A PRO 211 n 132 PRO 211 A GLY 212 n 133 GLY 212 A ALA 213 n 134 ALA 213 A LEU 214 n 135 LEU 214 A MET 215 n 136 MET 215 A TYR 216 n 137 TYR 216 A PRO 217 n 138 PRO 217 A ASN 218 n 139 ASN 218 A TYR 219 n 140 TYR 219 A ALA 220 n 141 ALA 220 A PHE 221 n 142 PHE 221 A ARG 222 n 143 ARG 222 A GLU 223 n 144 GLU 223 A THR 224 n 145 THR 224 A SER 225 n 146 SER 225 A ASN 226 n 147 ASN 226 A TYR 227 n 148 TYR 227 A SER 228 n 149 SER 228 A LEU 229 n 150 LEU 229 A PRO 230 n 151 PRO 230 A GLN 231 n 152 GLN 231 A ASP 232 n 153 ASP 232 A ASP 233 n 154 ASP 233 A ILE 234 n 155 ILE 234 A ASP 235 n 156 ASP 235 A GLY 236 n 157 GLY 236 A ILE 237 n 158 ILE 237 A GLN 238 n 159 GLN 238 A ALA 239 n 160 ALA 239 A ILE 240 n 161 ILE 240 A TYR 241 n 162 TYR 241 A GLY 242 n 163 GLY 242 A author_defined_assembly 1 monomeric A ASP 137 A O ASP 58 1_555 A CA 996 B CA CA 1_555 A GLY 169 A O GLY 90 1_555 160.9 A ASP 137 A O ASP 58 1_555 A CA 996 B CA CA 1_555 A GLY 171 A O GLY 92 1_555 92.8 A GLY 169 A O GLY 90 1_555 A CA 996 B CA CA 1_555 A GLY 171 A O GLY 92 1_555 105.5 A ASP 137 A O ASP 58 1_555 A CA 996 B CA CA 1_555 A ASP 173 A OD1 ASP 94 1_555 89.2 A GLY 169 A O GLY 90 1_555 A CA 996 B CA CA 1_555 A ASP 173 A OD1 ASP 94 1_555 91.6 A GLY 171 A O GLY 92 1_555 A CA 996 B CA CA 1_555 A ASP 173 A OD1 ASP 94 1_555 103.5 A ASP 137 A O ASP 58 1_555 A CA 996 B CA CA 1_555 A HOH 1093 G O HOH 1_555 117.2 A GLY 169 A O GLY 90 1_555 A CA 996 B CA CA 1_555 A HOH 1093 G O HOH 1_555 44.3 A GLY 171 A O GLY 92 1_555 A CA 996 B CA CA 1_555 A HOH 1093 G O HOH 1_555 149.8 A ASP 173 A OD1 ASP 94 1_555 A CA 996 B CA CA 1_555 A HOH 1093 G O HOH 1_555 81.5 A ASP 137 A O ASP 58 1_555 A CA 996 B CA CA 1_555 A HOH 1098 G O HOH 1_555 81.7 A GLY 169 A O GLY 90 1_555 A CA 996 B CA CA 1_555 A HOH 1098 G O HOH 1_555 79.7 A GLY 171 A O GLY 92 1_555 A CA 996 B CA CA 1_555 A HOH 1098 G O HOH 1_555 150.4 A ASP 173 A OD1 ASP 94 1_555 A CA 996 B CA CA 1_555 A HOH 1098 G O HOH 1_555 105.5 A HOH 1093 G O HOH 1_555 A CA 996 B CA CA 1_555 A HOH 1098 G O HOH 1_555 43.4 A HIS 147 A NE2 HIS 68 1_555 A ZN 998 D ZN ZN 1_555 A ASP 149 A OD2 ASP 70 1_555 115.4 A HIS 147 A NE2 HIS 68 1_555 A ZN 998 D ZN ZN 1_555 A HIS 162 A NE2 HIS 83 1_555 110.6 A ASP 149 A OD2 ASP 70 1_555 A ZN 998 D ZN ZN 1_555 A HIS 162 A NE2 HIS 83 1_555 112.6 A HIS 147 A NE2 HIS 68 1_555 A ZN 998 D ZN ZN 1_555 A HIS 175 A ND1 HIS 96 1_555 111.2 A ASP 149 A OD2 ASP 70 1_555 A ZN 998 D ZN ZN 1_555 A HIS 175 A ND1 HIS 96 1_555 91.2 A HIS 162 A NE2 HIS 83 1_555 A ZN 998 D ZN ZN 1_555 A HIS 175 A ND1 HIS 96 1_555 114.8 A ASP 154 A OD1 ASP 75 1_555 A CA 997 C CA CA 1_555 A GLY 155 A O GLY 76 1_555 89.6 A ASP 154 A OD1 ASP 75 1_555 A CA 997 C CA CA 1_555 A ASN 157 A O ASN 78 1_555 88.0 A GLY 155 A O GLY 76 1_555 A CA 997 C CA CA 1_555 A ASN 157 A O ASN 78 1_555 81.7 A ASP 154 A OD1 ASP 75 1_555 A CA 997 C CA CA 1_555 A ILE 159 A O ILE 80 1_555 88.4 A GLY 155 A O GLY 76 1_555 A CA 997 C CA CA 1_555 A ILE 159 A O ILE 80 1_555 175.8 A ASN 157 A O ASN 78 1_555 A CA 997 C CA CA 1_555 A ILE 159 A O ILE 80 1_555 102.0 A ASP 154 A OD1 ASP 75 1_555 A CA 997 C CA CA 1_555 A ASP 177 A OD2 ASP 98 1_555 90.7 A GLY 155 A O GLY 76 1_555 A CA 997 C CA CA 1_555 A ASP 177 A OD2 ASP 98 1_555 88.0 A ASN 157 A O ASN 78 1_555 A CA 997 C CA CA 1_555 A ASP 177 A OD2 ASP 98 1_555 169.6 A ILE 159 A O ILE 80 1_555 A CA 997 C CA CA 1_555 A ASP 177 A OD2 ASP 98 1_555 88.2 A ASP 154 A OD1 ASP 75 1_555 A CA 997 C CA CA 1_555 A GLU 180 A OE2 GLU 101 1_555 169.9 A GLY 155 A O GLY 76 1_555 A CA 997 C CA CA 1_555 A GLU 180 A OE2 GLU 101 1_555 99.7 A ASN 157 A O ASN 78 1_555 A CA 997 C CA CA 1_555 A GLU 180 A OE2 GLU 101 1_555 89.7 A ILE 159 A O ILE 80 1_555 A CA 997 C CA CA 1_555 A GLU 180 A OE2 GLU 101 1_555 82.5 A ASP 177 A OD2 ASP 98 1_555 A CA 997 C CA CA 1_555 A GLU 180 A OE2 GLU 101 1_555 93.4 A HIS 197 A NE2 HIS 118 1_555 A ZN 999 E ZN ZN 1_555 A HIS 201 A NE2 HIS 122 1_555 105.3 A HIS 197 A NE2 HIS 118 1_555 A ZN 999 E ZN ZN 1_555 A HIS 207 A NE2 HIS 128 1_555 104.1 A HIS 201 A NE2 HIS 122 1_555 A ZN 999 E ZN ZN 1_555 A HIS 207 A NE2 HIS 128 1_555 101.9 A HIS 197 A NE2 HIS 118 1_555 A ZN 999 E ZN ZN 1_555 A 2NI 1000 F O3 2NI 1_555 110.0 A HIS 201 A NE2 HIS 122 1_555 A ZN 999 E ZN ZN 1_555 A 2NI 1000 F O3 2NI 1_555 119.6 A HIS 207 A NE2 HIS 128 1_555 A ZN 999 E ZN ZN 1_555 A 2NI 1000 F O3 2NI 1_555 114.5 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O THR 129 A O THR 50 A N LEU 93 A N LEU 14 A N ARG 96 A N ARG 17 A O ILE 140 A O ILE 61 A N ALA 141 A N ALA 62 A O PHE 176 A O PHE 97 A O HIS 175 A O HIS 96 A N HIS 162 A N HIS 83 1 -18.77 2.70 111.00 92.23 A A A N CA C SER SER SER 151 151 151 N 1 A A OD1 OG1 ASN THR 150 185 2.12 1_555 3_555 1 A ARG 145 40.32 -131.11 1 A HIS 147 -143.19 41.35 1 A ASN 157 59.62 -167.43 1 A THR 185 -108.20 -161.72 1 A GLU 223 -42.80 94.42 1 A SER 225 -50.89 -81.62 1 A TYR 227 -51.63 109.00 1 A LEU 229 -34.32 125.89 0.251 0.216 0.219 0.219 1.80 10.0 974 9738 9738 random 1 0.0 MOLECULAR REPLACEMENT PDB ENTRY 1I76 Engh & Huber 1.80 10.0 125 1435 27 0 1283 0.007 1.4 18.2 1.80 30.00 1ZP5 10932 10932 0.0 0.0 0.07 1 19.8 6 97.8 0.372 1.80 1.86 3.48 5 95.6 data collection MAR345 data scaling SCALEPACK phasing AMoRE refinement CNS 1.0 Crystal structure of the complex between MMP-8 and a N-hydroxyurea inhibitor 1 N N 2 N N 2 N N 3 N N 3 N N 4 N N 5 N N A SER 105 A SER 26 HELX_P A VAL 122 A VAL 43 1 1 18 A ASN 190 A ASN 111 HELX_P A LEU 203 A LEU 124 1 2 14 A PRO 230 A PRO 151 HELX_P A GLY 242 A GLY 163 1 3 13 metalc 2.532 A ASP 137 A O ASP 58 1_555 A CA 996 B CA CA 1_555 metalc 2.081 A HIS 147 A NE2 HIS 68 1_555 A ZN 998 D ZN ZN 1_555 metalc 1.983 A ASP 149 A OD2 ASP 70 1_555 A ZN 998 D ZN ZN 1_555 metalc 2.469 A ASP 154 A OD1 ASP 75 1_555 A CA 997 C CA CA 1_555 metalc 2.430 A GLY 155 A O GLY 76 1_555 A CA 997 C CA CA 1_555 metalc 2.403 A ASN 157 A O ASN 78 1_555 A CA 997 C CA CA 1_555 metalc 2.448 A ILE 159 A O ILE 80 1_555 A CA 997 C CA CA 1_555 metalc 2.048 A HIS 162 A NE2 HIS 83 1_555 A ZN 998 D ZN ZN 1_555 metalc 2.652 A GLY 169 A O GLY 90 1_555 A CA 996 B CA CA 1_555 metalc 2.537 A GLY 171 A O GLY 92 1_555 A CA 996 B CA CA 1_555 metalc 2.548 A ASP 173 A OD1 ASP 94 1_555 A CA 996 B CA CA 1_555 metalc 2.070 A HIS 175 A ND1 HIS 96 1_555 A ZN 998 D ZN ZN 1_555 metalc 2.427 A ASP 177 A OD2 ASP 98 1_555 A CA 997 C CA CA 1_555 metalc 2.432 A GLU 180 A OE2 GLU 101 1_555 A CA 997 C CA CA 1_555 metalc 2.081 A HIS 197 A NE2 HIS 118 1_555 A ZN 999 E ZN ZN 1_555 metalc 2.060 A HIS 201 A NE2 HIS 122 1_555 A ZN 999 E ZN ZN 1_555 metalc 2.106 A HIS 207 A NE2 HIS 128 1_555 A ZN 999 E ZN ZN 1_555 metalc 3.205 A CA 996 B CA CA 1_555 A HOH 1093 G O HOH 1_555 metalc 2.668 A CA 996 B CA CA 1_555 A HOH 1098 G O HOH 1_555 metalc 2.263 A ZN 999 E ZN ZN 1_555 A 2NI 1000 F O3 2NI 1_555 HYDROLASE hydrolase A ASN 188 A ASN 109 1 A TYR 189 A TYR 110 -0.35 MMP8_HUMAN UNP 1 100 P22894 MLTPGNPKWERTNLTYRIRNYTPQLSEAEVERAIKDAFELWSVASPLIFTRISQGEADINIAFYQRDHGDNSPFDGPNGI LAHAFQPGQGIGGDAHFDAEETWTNTSANYNLFLVAAHEFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQA IYG 100 262 1ZP5 80 242 P22894 A 1 1 163 5 parallel parallel parallel anti-parallel A ILE 127 A ILE 48 A ARG 130 A ARG 51 A ASN 92 A ASN 13 A ILE 97 A ILE 18 A ILE 138 A ILE 59 A TYR 143 A TYR 64 A ALA 174 A ALA 95 A ASP 177 A ASP 98 A ALA 161 A ALA 82 A ALA 163 A ALA 84 BINDING SITE FOR RESIDUE CA A 996 A CA 996 Software 5 BINDING SITE FOR RESIDUE CA A 997 A CA 997 Software 6 BINDING SITE FOR RESIDUE ZN A 998 A ZN 998 Software 4 BINDING SITE FOR RESIDUE ZN A 999 A ZN 999 Software 4 BINDING SITE FOR RESIDUE 2NI A 1000 A 2NI 1000 Software 16 A ASP 137 A ASP 58 5 1_555 A GLY 169 A GLY 90 5 1_555 A GLY 171 A GLY 92 5 1_555 A ASP 173 A ASP 94 5 1_555 A HOH 1098 G HOH 5 1_555 A ASP 154 A ASP 75 6 1_555 A GLY 155 A GLY 76 6 1_555 A ASN 157 A ASN 78 6 1_555 A ILE 159 A ILE 80 6 1_555 A ASP 177 A ASP 98 6 1_555 A GLU 180 A GLU 101 6 1_555 A HIS 147 A HIS 68 4 1_555 A ASP 149 A ASP 70 4 1_555 A HIS 162 A HIS 83 4 1_555 A HIS 175 A HIS 96 4 1_555 A HIS 197 A HIS 118 4 1_555 A HIS 201 A HIS 122 4 1_555 A HIS 207 A HIS 128 4 1_555 A 2NI 1000 F 2NI 4 1_555 A ILE 159 A ILE 80 16 1_555 A LEU 160 A LEU 81 16 1_555 A ALA 161 A ALA 82 16 1_555 A LEU 193 A LEU 114 16 1_555 A HIS 197 A HIS 118 16 1_555 A GLU 198 A GLU 119 16 1_555 A HIS 207 A HIS 128 16 1_555 A LEU 214 A LEU 135 16 1_555 A TYR 216 A TYR 137 16 1_555 A PRO 217 A PRO 138 16 1_555 A ASN 218 A ASN 139 16 1_555 A TYR 219 A TYR 140 16 1_555 A ALA 220 A ALA 141 16 1_555 A ZN 999 E ZN 16 1_555 A HOH 1069 G HOH 16 1_555 A HOH 1105 G HOH 16 1_555 19 P 21 21 21