1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Lu, J.
Li, H.
Wang, Y.
Sudhof, T.C.
Rizo, J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
N
N
159
S
C
N
160
N
C
N
161
N
O
N
162
S
C
N
163
N
C
N
164
N
C
N
165
N
C
N
166
N
O
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
N
N
181
S
C
N
182
N
C
N
183
N
O
N
184
N
C
N
185
N
C
N
186
N
C
N
187
N
C
N
188
N
O
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
N
N
203
S
C
N
204
N
C
N
205
N
O
N
206
N
C
N
207
N
C
N
208
N
C
N
209
N
C
N
210
N
N
N
211
N
O
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
N
N
228
S
C
N
229
N
C
N
230
N
O
N
231
N
C
N
232
N
C
N
233
N
S
N
234
N
C
N
235
N
O
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
N
N
248
S
C
N
249
N
C
N
250
N
O
N
251
N
C
Y
252
N
C
Y
253
N
C
Y
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
N
258
N
O
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
N
N
271
S
C
N
272
N
C
N
273
N
O
N
274
N
C
N
275
N
C
N
276
N
C
N
277
N
O
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
N
N
288
S
C
N
289
N
C
N
290
N
O
N
291
N
C
N
292
N
O
N
293
N
O
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
N
N
302
S
C
N
303
N
C
N
304
N
O
N
305
R
C
N
306
N
O
N
307
N
C
N
308
N
O
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
N
N
319
S
C
N
320
N
C
N
321
N
O
N
322
N
C
Y
323
N
C
Y
324
N
C
Y
325
N
C
Y
326
N
N
Y
327
N
C
Y
328
N
C
Y
329
N
C
Y
330
N
C
Y
331
N
C
N
332
N
O
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
N
N
346
S
C
N
347
N
C
N
348
N
O
N
349
N
C
Y
350
N
C
Y
351
N
C
Y
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
N
356
N
O
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
N
N
370
S
C
N
371
N
C
N
372
N
O
N
373
N
C
N
374
N
C
N
375
N
C
N
376
N
O
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
doub
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
doub
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
doub
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
doub
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
doub
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
Y
246
N
doub
Y
247
N
sing
Y
248
N
sing
N
249
N
sing
Y
250
N
doub
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
doub
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
doub
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
doub
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
doub
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
Y
315
N
doub
Y
316
N
sing
Y
317
N
sing
N
318
N
sing
Y
319
N
doub
Y
320
N
sing
Y
321
N
sing
N
322
N
sing
Y
323
N
sing
Y
324
N
doub
N
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
doub
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
Y
343
N
doub
Y
344
N
sing
Y
345
N
sing
N
346
N
sing
Y
347
N
doub
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
doub
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
352
455
466
10.1016/j.jmb.2005.07.047
16095618
Solution Structure of the RIM1alpha PDZ Domain in Complex with an ELKS1b C-terminal Peptide
2005
10.2210/pdb1zub/pdb
pdb_00001zub
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
12244.122
Regulating synaptic membrane exocytosis protein 1
PDZ Domain
1
man
polymer
1294.301
ELKS1b
1
man
polymer
Rab3-interacting molecule 1, RIM 1
ERC protein 1, ERC1, CAZ-associated structural protein 2, CAST2, RAB6 interacting protein 2, C-terminal peptide
no
no
GSPGSHPVTWQPSKEGDRLIGRVILNKRTTMPKESGALLGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVL
EWNGKPLPGATNEEVYNIILESKSEPQVEIIVSR
GSPGSHPVTWQPSKEGDRLIGRVILNKRTTMPKESGALLGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVL
EWNGKPLPGATNEEVYNIILESKSEPQVEIIVSR
A
polypeptide(L)
no
no
CDQDEEEGIWA
CDQDEEEGIWA
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Norway rat
Rattus
Escherichia
sample
Rims1, Rim1
10116
Rattus norvegicus
562
Escherichia coli
BL21-codon+
PLASMID
pGEX-KT
Norway rat
Rattus
Escherichia
Escherichia coli
sample
Rab6ip2, Cast2, Elks, Erc1
10116
Rattus norvegicus
511693
Escherichia coli BL21
BL21
PLASMID
pTMHa
database_2
pdbx_struct_assembly
pdbx_struct_oper_list
struct_ref_seq_dif
chem_comp_atom
chem_comp_bond
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Data collection
1
0
2005-08-30
1
1
2008-04-30
1
2
2011-07-13
1
3
2022-03-02
1
4
2024-05-22
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
RCSB
Y
RCSB
2005-05-30
REL
REL
structures with the lowest energy
1000
20
3D_15N-separated_NOESY
3D_13C-separated_NOESY
3D_15N-separated_NOESY
3D_13C-separated_NOESY
150mM NaCl
6.5
ambient
303
K
torsion angle dynamics
1
lowest energy
0.5mM Rim1alpha PDZ domain U-15N,
0.75mM ELKS1b C-terminal peptide,
20mM Mes buffer, 90% H2O, 10% D2O
90% H2O/10% D2O
0.5mM Rim1alpha PDZ domain U-15N, 13C,
0.75mM ELKS1b C-terminal peptide, 20mM Mes buffer, 90% H2O, 10% D2O
90% H2O/10% D2O
0.5mM Rim1alpha PDZ domain U-15N,10%-13C,
0.75mM ELKS1b C-terminal peptide,
20mM Mes buffer, 90% H2O, 10% D2O
90% H2O/10% D2O
0.5mM ELKS1b C-terminal peptide U-15N,
0.75mM Rim1alpha PDZ domain,
20mM Mes buffer, 90% H2O, 10% D2O
90% H2O/10% D2O
0.5mM ELKS1b C-terminal peptide U-15N, 13C,
0.75mM Rim1alpha PDZ domain,
20mM Mes buffer, 90% H2O, 10% D2O
90% H2O/10% D2O
0.5mM ELKS1b C-terminal peptide U-15N, 10%-13C,
0.75mM Rim1alpha PDZ domain,
20mM Mes buffer, 90% H2O, 10% D2O
90% H2O/10% D2O
Brunger
refinement
CNS
1.1
Delaglio
processing
NMRPipe
2.3
Johnson
data analysis
NMRView
5.1
600
Varian
INOVA
500
Varian
INOVA
n
1
592
A
n
2
593
A
n
3
594
A
n
4
595
A
n
5
596
A
HIS
597
n
6
HIS
597
A
PRO
598
n
7
PRO
598
A
VAL
599
n
8
VAL
599
A
THR
600
n
9
THR
600
A
TRP
601
n
10
TRP
601
A
GLN
602
n
11
GLN
602
A
PRO
603
n
12
PRO
603
A
SER
604
n
13
SER
604
A
LYS
605
n
14
LYS
605
A
GLU
606
n
15
GLU
606
A
GLY
607
n
16
GLY
607
A
ASP
608
n
17
ASP
608
A
ARG
609
n
18
ARG
609
A
LEU
610
n
19
LEU
610
A
ILE
611
n
20
ILE
611
A
GLY
612
n
21
GLY
612
A
ARG
613
n
22
ARG
613
A
VAL
614
n
23
VAL
614
A
ILE
615
n
24
ILE
615
A
LEU
616
n
25
LEU
616
A
ASN
617
n
26
ASN
617
A
LYS
618
n
27
LYS
618
A
ARG
619
n
28
ARG
619
A
THR
620
n
29
THR
620
A
THR
621
n
30
THR
621
A
MET
622
n
31
MET
622
A
PRO
623
n
32
PRO
623
A
LYS
624
n
33
LYS
624
A
GLU
625
n
34
GLU
625
A
SER
626
n
35
SER
626
A
GLY
627
n
36
GLY
627
A
ALA
628
n
37
ALA
628
A
LEU
629
n
38
LEU
629
A
LEU
630
n
39
LEU
630
A
GLY
631
n
40
GLY
631
A
LEU
632
n
41
LEU
632
A
LYS
633
n
42
LYS
633
A
VAL
634
n
43
VAL
634
A
VAL
635
n
44
VAL
635
A
GLY
636
n
45
GLY
636
A
GLY
637
n
46
GLY
637
A
LYS
638
n
47
LYS
638
A
MET
639
n
48
MET
639
A
THR
640
n
49
THR
640
A
ASP
641
n
50
ASP
641
A
LEU
642
n
51
LEU
642
A
GLY
643
n
52
GLY
643
A
ARG
644
n
53
ARG
644
A
LEU
645
n
54
LEU
645
A
GLY
646
n
55
GLY
646
A
ALA
647
n
56
ALA
647
A
PHE
648
n
57
PHE
648
A
ILE
649
n
58
ILE
649
A
THR
650
n
59
THR
650
A
LYS
651
n
60
LYS
651
A
VAL
652
n
61
VAL
652
A
LYS
653
n
62
LYS
653
A
LYS
654
n
63
LYS
654
A
GLY
655
n
64
GLY
655
A
SER
656
n
65
SER
656
A
LEU
657
n
66
LEU
657
A
ALA
658
n
67
ALA
658
A
ASP
659
n
68
ASP
659
A
VAL
660
n
69
VAL
660
A
VAL
661
n
70
VAL
661
A
GLY
662
n
71
GLY
662
A
HIS
663
n
72
HIS
663
A
LEU
664
n
73
LEU
664
A
ARG
665
n
74
ARG
665
A
ALA
666
n
75
ALA
666
A
GLY
667
n
76
GLY
667
A
ASP
668
n
77
ASP
668
A
GLU
669
n
78
GLU
669
A
VAL
670
n
79
VAL
670
A
LEU
671
n
80
LEU
671
A
GLU
672
n
81
GLU
672
A
TRP
673
n
82
TRP
673
A
ASN
674
n
83
ASN
674
A
GLY
675
n
84
GLY
675
A
LYS
676
n
85
LYS
676
A
PRO
677
n
86
PRO
677
A
LEU
678
n
87
LEU
678
A
PRO
679
n
88
PRO
679
A
GLY
680
n
89
GLY
680
A
ALA
681
n
90
ALA
681
A
THR
682
n
91
THR
682
A
ASN
683
n
92
ASN
683
A
GLU
684
n
93
GLU
684
A
GLU
685
n
94
GLU
685
A
VAL
686
n
95
VAL
686
A
TYR
687
n
96
TYR
687
A
ASN
688
n
97
ASN
688
A
ILE
689
n
98
ILE
689
A
ILE
690
n
99
ILE
690
A
LEU
691
n
100
LEU
691
A
GLU
692
n
101
GLU
692
A
SER
693
n
102
SER
693
A
LYS
694
n
103
LYS
694
A
SER
695
n
104
SER
695
A
GLU
696
n
105
GLU
696
A
PRO
697
n
106
PRO
697
A
GLN
698
n
107
GLN
698
A
VAL
699
n
108
VAL
699
A
GLU
700
n
109
GLU
700
A
ILE
701
n
110
ILE
701
A
ILE
702
n
111
ILE
702
A
VAL
703
n
112
VAL
703
A
SER
704
n
113
SER
704
A
ARG
705
n
114
ARG
705
A
n
1
938
B
n
2
939
B
n
3
940
B
n
4
941
B
n
5
942
B
GLU
943
n
6
GLU
943
B
GLU
944
n
7
GLU
944
B
GLY
945
n
8
GLY
945
B
ILE
946
n
9
ILE
946
B
TRP
947
n
10
TRP
947
B
ALA
948
n
11
ALA
948
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLN
602
A
N
GLN
11
A
O
ILE
611
A
O
ILE
20
A
N
VAL
614
A
N
VAL
23
A
O
ILE
701
A
O
ILE
110
A
O
ILE
702
A
O
ILE
111
A
N
GLU
672
A
N
GLU
81
A
N
TRP
673
A
N
TRP
82
A
O
LYS
676
A
O
LYS
85
A
N
VAL
635
A
N
VAL
44
A
O
PHE
648
A
O
PHE
57
1
A
GLY
592
A
GLY
1
1
Y
1
A
SER
593
A
SER
2
1
Y
1
A
PRO
594
A
PRO
3
1
Y
1
A
GLY
595
A
GLY
4
1
Y
1
A
SER
596
A
SER
5
1
Y
1
B
CYS
938
B
CYS
1
1
Y
1
B
ASP
939
B
ASP
2
1
Y
1
B
GLN
940
B
GLN
3
1
Y
1
B
ASP
941
B
ASP
4
1
Y
1
B
GLU
942
B
GLU
5
1
Y
2
A
GLY
592
A
GLY
1
1
Y
2
A
SER
593
A
SER
2
1
Y
2
A
PRO
594
A
PRO
3
1
Y
2
A
GLY
595
A
GLY
4
1
Y
2
A
SER
596
A
SER
5
1
Y
2
B
CYS
938
B
CYS
1
1
Y
2
B
ASP
939
B
ASP
2
1
Y
2
B
GLN
940
B
GLN
3
1
Y
2
B
ASP
941
B
ASP
4
1
Y
2
B
GLU
942
B
GLU
5
1
Y
3
A
GLY
592
A
GLY
1
1
Y
3
A
SER
593
A
SER
2
1
Y
3
A
PRO
594
A
PRO
3
1
Y
3
A
GLY
595
A
GLY
4
1
Y
3
A
SER
596
A
SER
5
1
Y
3
B
CYS
938
B
CYS
1
1
Y
3
B
ASP
939
B
ASP
2
1
Y
3
B
GLN
940
B
GLN
3
1
Y
3
B
ASP
941
B
ASP
4
1
Y
3
B
GLU
942
B
GLU
5
1
Y
4
A
GLY
592
A
GLY
1
1
Y
4
A
SER
593
A
SER
2
1
Y
4
A
PRO
594
A
PRO
3
1
Y
4
A
GLY
595
A
GLY
4
1
Y
4
A
SER
596
A
SER
5
1
Y
4
B
CYS
938
B
CYS
1
1
Y
4
B
ASP
939
B
ASP
2
1
Y
4
B
GLN
940
B
GLN
3
1
Y
4
B
ASP
941
B
ASP
4
1
Y
4
B
GLU
942
B
GLU
5
1
Y
5
A
GLY
592
A
GLY
1
1
Y
5
A
SER
593
A
SER
2
1
Y
5
A
PRO
594
A
PRO
3
1
Y
5
A
GLY
595
A
GLY
4
1
Y
5
A
SER
596
A
SER
5
1
Y
5
B
CYS
938
B
CYS
1
1
Y
5
B
ASP
939
B
ASP
2
1
Y
5
B
GLN
940
B
GLN
3
1
Y
5
B
ASP
941
B
ASP
4
1
Y
5
B
GLU
942
B
GLU
5
1
Y
6
A
GLY
592
A
GLY
1
1
Y
6
A
SER
593
A
SER
2
1
Y
6
A
PRO
594
A
PRO
3
1
Y
6
A
GLY
595
A
GLY
4
1
Y
6
A
SER
596
A
SER
5
1
Y
6
B
CYS
938
B
CYS
1
1
Y
6
B
ASP
939
B
ASP
2
1
Y
6
B
GLN
940
B
GLN
3
1
Y
6
B
ASP
941
B
ASP
4
1
Y
6
B
GLU
942
B
GLU
5
1
Y
7
A
GLY
592
A
GLY
1
1
Y
7
A
SER
593
A
SER
2
1
Y
7
A
PRO
594
A
PRO
3
1
Y
7
A
GLY
595
A
GLY
4
1
Y
7
A
SER
596
A
SER
5
1
Y
7
B
CYS
938
B
CYS
1
1
Y
7
B
ASP
939
B
ASP
2
1
Y
7
B
GLN
940
B
GLN
3
1
Y
7
B
ASP
941
B
ASP
4
1
Y
7
B
GLU
942
B
GLU
5
1
Y
8
A
GLY
592
A
GLY
1
1
Y
8
A
SER
593
A
SER
2
1
Y
8
A
PRO
594
A
PRO
3
1
Y
8
A
GLY
595
A
GLY
4
1
Y
8
A
SER
596
A
SER
5
1
Y
8
B
CYS
938
B
CYS
1
1
Y
8
B
ASP
939
B
ASP
2
1
Y
8
B
GLN
940
B
GLN
3
1
Y
8
B
ASP
941
B
ASP
4
1
Y
8
B
GLU
942
B
GLU
5
1
Y
9
A
GLY
592
A
GLY
1
1
Y
9
A
SER
593
A
SER
2
1
Y
9
A
PRO
594
A
PRO
3
1
Y
9
A
GLY
595
A
GLY
4
1
Y
9
A
SER
596
A
SER
5
1
Y
9
B
CYS
938
B
CYS
1
1
Y
9
B
ASP
939
B
ASP
2
1
Y
9
B
GLN
940
B
GLN
3
1
Y
9
B
ASP
941
B
ASP
4
1
Y
9
B
GLU
942
B
GLU
5
1
Y
10
A
GLY
592
A
GLY
1
1
Y
10
A
SER
593
A
SER
2
1
Y
10
A
PRO
594
A
PRO
3
1
Y
10
A
GLY
595
A
GLY
4
1
Y
10
A
SER
596
A
SER
5
1
Y
10
B
CYS
938
B
CYS
1
1
Y
10
B
ASP
939
B
ASP
2
1
Y
10
B
GLN
940
B
GLN
3
1
Y
10
B
ASP
941
B
ASP
4
1
Y
10
B
GLU
942
B
GLU
5
1
Y
11
A
GLY
592
A
GLY
1
1
Y
11
A
SER
593
A
SER
2
1
Y
11
A
PRO
594
A
PRO
3
1
Y
11
A
GLY
595
A
GLY
4
1
Y
11
A
SER
596
A
SER
5
1
Y
11
B
CYS
938
B
CYS
1
1
Y
11
B
ASP
939
B
ASP
2
1
Y
11
B
GLN
940
B
GLN
3
1
Y
11
B
ASP
941
B
ASP
4
1
Y
11
B
GLU
942
B
GLU
5
1
Y
12
A
GLY
592
A
GLY
1
1
Y
12
A
SER
593
A
SER
2
1
Y
12
A
PRO
594
A
PRO
3
1
Y
12
A
GLY
595
A
GLY
4
1
Y
12
A
SER
596
A
SER
5
1
Y
12
B
CYS
938
B
CYS
1
1
Y
12
B
ASP
939
B
ASP
2
1
Y
12
B
GLN
940
B
GLN
3
1
Y
12
B
ASP
941
B
ASP
4
1
Y
12
B
GLU
942
B
GLU
5
1
Y
13
A
GLY
592
A
GLY
1
1
Y
13
A
SER
593
A
SER
2
1
Y
13
A
PRO
594
A
PRO
3
1
Y
13
A
GLY
595
A
GLY
4
1
Y
13
A
SER
596
A
SER
5
1
Y
13
B
CYS
938
B
CYS
1
1
Y
13
B
ASP
939
B
ASP
2
1
Y
13
B
GLN
940
B
GLN
3
1
Y
13
B
ASP
941
B
ASP
4
1
Y
13
B
GLU
942
B
GLU
5
1
Y
14
A
GLY
592
A
GLY
1
1
Y
14
A
SER
593
A
SER
2
1
Y
14
A
PRO
594
A
PRO
3
1
Y
14
A
GLY
595
A
GLY
4
1
Y
14
A
SER
596
A
SER
5
1
Y
14
B
CYS
938
B
CYS
1
1
Y
14
B
ASP
939
B
ASP
2
1
Y
14
B
GLN
940
B
GLN
3
1
Y
14
B
ASP
941
B
ASP
4
1
Y
14
B
GLU
942
B
GLU
5
1
Y
15
A
GLY
592
A
GLY
1
1
Y
15
A
SER
593
A
SER
2
1
Y
15
A
PRO
594
A
PRO
3
1
Y
15
A
GLY
595
A
GLY
4
1
Y
15
A
SER
596
A
SER
5
1
Y
15
B
CYS
938
B
CYS
1
1
Y
15
B
ASP
939
B
ASP
2
1
Y
15
B
GLN
940
B
GLN
3
1
Y
15
B
ASP
941
B
ASP
4
1
Y
15
B
GLU
942
B
GLU
5
1
Y
16
A
GLY
592
A
GLY
1
1
Y
16
A
SER
593
A
SER
2
1
Y
16
A
PRO
594
A
PRO
3
1
Y
16
A
GLY
595
A
GLY
4
1
Y
16
A
SER
596
A
SER
5
1
Y
16
B
CYS
938
B
CYS
1
1
Y
16
B
ASP
939
B
ASP
2
1
Y
16
B
GLN
940
B
GLN
3
1
Y
16
B
ASP
941
B
ASP
4
1
Y
16
B
GLU
942
B
GLU
5
1
Y
17
A
GLY
592
A
GLY
1
1
Y
17
A
SER
593
A
SER
2
1
Y
17
A
PRO
594
A
PRO
3
1
Y
17
A
GLY
595
A
GLY
4
1
Y
17
A
SER
596
A
SER
5
1
Y
17
B
CYS
938
B
CYS
1
1
Y
17
B
ASP
939
B
ASP
2
1
Y
17
B
GLN
940
B
GLN
3
1
Y
17
B
ASP
941
B
ASP
4
1
Y
17
B
GLU
942
B
GLU
5
1
Y
18
A
GLY
592
A
GLY
1
1
Y
18
A
SER
593
A
SER
2
1
Y
18
A
PRO
594
A
PRO
3
1
Y
18
A
GLY
595
A
GLY
4
1
Y
18
A
SER
596
A
SER
5
1
Y
18
B
CYS
938
B
CYS
1
1
Y
18
B
ASP
939
B
ASP
2
1
Y
18
B
GLN
940
B
GLN
3
1
Y
18
B
ASP
941
B
ASP
4
1
Y
18
B
GLU
942
B
GLU
5
1
Y
19
A
GLY
592
A
GLY
1
1
Y
19
A
SER
593
A
SER
2
1
Y
19
A
PRO
594
A
PRO
3
1
Y
19
A
GLY
595
A
GLY
4
1
Y
19
A
SER
596
A
SER
5
1
Y
19
B
CYS
938
B
CYS
1
1
Y
19
B
ASP
939
B
ASP
2
1
Y
19
B
GLN
940
B
GLN
3
1
Y
19
B
ASP
941
B
ASP
4
1
Y
19
B
GLU
942
B
GLU
5
1
Y
20
A
GLY
592
A
GLY
1
1
Y
20
A
SER
593
A
SER
2
1
Y
20
A
PRO
594
A
PRO
3
1
Y
20
A
GLY
595
A
GLY
4
1
Y
20
A
SER
596
A
SER
5
1
Y
20
B
CYS
938
B
CYS
1
1
Y
20
B
ASP
939
B
ASP
2
1
Y
20
B
GLN
940
B
GLN
3
1
Y
20
B
ASP
941
B
ASP
4
1
Y
20
B
GLU
942
B
GLU
5
1
Y
4
A
A
O
H
VAL
PHE
635
648
1.57
6
A
A
O
H
VAL
ILE
614
701
1.57
17
A
A
O
H
VAL
ILE
614
701
1.58
19
A
A
O
H
LEU
VAL
616
699
1.60
1
A
SER
604
-64.87
-175.48
1
A
THR
621
-163.54
31.87
1
A
GLU
625
-174.16
-92.90
1
A
ALA
628
-169.12
-56.61
1
A
LEU
629
-119.05
-89.77
1
A
LYS
654
-54.89
108.21
2
A
GLU
625
177.76
-80.66
2
A
ALA
628
-97.10
-80.50
2
A
LEU
629
-117.88
-95.11
2
A
LYS
654
-57.70
103.94
2
A
HIS
663
72.87
61.77
2
A
PRO
679
-39.45
114.62
3
A
THR
620
57.61
19.09
3
A
THR
621
-157.89
65.26
3
A
GLU
625
-145.17
-82.06
3
A
SER
626
178.17
-45.43
3
A
LEU
629
-126.55
-91.32
3
A
MET
639
-58.54
104.53
3
A
LYS
654
-59.74
103.72
3
A
HIS
663
68.21
66.89
3
B
GLU
944
-59.83
-177.19
4
A
GLU
625
178.72
-39.94
4
A
ALA
628
-63.40
-84.06
4
A
LEU
629
-117.84
-89.58
4
A
LEU
630
-125.24
-59.85
4
A
LYS
654
-57.79
102.83
4
A
HIS
663
71.04
62.12
5
A
SER
604
-65.38
-175.42
5
A
THR
621
56.86
-169.55
5
A
GLU
625
178.03
151.02
5
A
ALA
628
-174.29
-71.55
5
A
LEU
629
-120.35
-85.40
5
A
LEU
630
-120.60
-57.59
5
A
LYS
651
-170.57
148.68
5
A
LYS
654
-56.18
101.99
5
A
HIS
663
70.77
57.61
6
A
GLU
606
-69.75
17.58
6
A
ASP
608
65.67
74.79
6
A
GLU
625
-143.28
-81.47
6
A
SER
626
-161.77
-43.33
6
A
ALA
628
-154.59
-60.99
6
A
LEU
629
-116.59
-91.90
6
A
LYS
654
-57.52
101.00
6
A
HIS
663
70.30
65.00
7
A
SER
604
-61.01
-177.14
7
A
THR
621
57.41
156.16
7
A
GLU
625
-89.85
-79.14
7
A
SER
626
-163.23
-68.35
7
A
ALA
628
-69.45
-86.51
7
A
LEU
629
-122.83
-77.46
7
A
LEU
630
-134.33
-52.42
7
A
MET
639
-58.55
104.53
7
A
LYS
651
-170.52
146.26
7
A
LYS
654
-54.54
97.64
7
A
HIS
663
72.80
52.65
7
A
PRO
679
-39.90
112.91
8
A
GLU
606
-67.08
17.92
8
A
ASP
608
76.80
64.32
8
A
GLU
625
-159.68
-81.83
8
A
SER
626
-172.83
-176.96
8
A
LEU
629
-118.94
-84.61
8
A
LEU
630
-125.97
-59.24
8
A
LYS
654
-58.46
104.89
8
A
HIS
663
65.81
63.71
9
A
ASP
608
-175.86
30.04
9
A
GLU
625
-164.89
-82.53
9
A
SER
626
178.62
-43.86
9
A
ALA
628
-128.46
-52.35
9
A
LEU
629
-125.70
-80.72
9
A
LYS
654
-54.93
103.73
9
A
HIS
663
65.07
68.80
10
A
SER
626
-95.67
-77.57
10
A
ALA
628
-98.82
-60.58
10
A
LEU
629
-127.90
-80.97
10
A
LEU
630
-132.15
-43.66
10
A
LYS
654
-59.69
105.40
10
A
HIS
663
63.46
70.51
10
A
PRO
679
-42.50
109.44
10
B
GLU
944
61.22
166.17
11
A
SER
604
-60.69
-176.34
11
A
GLU
625
61.80
66.38
11
A
ALA
628
-171.61
-39.25
11
A
LEU
629
-121.23
-89.64
11
A
LYS
654
-59.01
98.88
11
A
HIS
663
73.56
55.89
12
A
SER
604
-65.80
-179.61
12
A
THR
621
61.66
161.93
12
A
GLU
625
179.58
-61.20
12
A
SER
626
-175.37
-35.90
12
A
ALA
628
-168.79
-67.25
12
A
LEU
629
-118.30
-82.40
12
A
LEU
630
-131.53
-49.72
12
A
MET
639
-58.43
106.65
12
A
LYS
654
-56.74
101.68
12
A
HIS
663
66.14
67.57
13
A
ASP
608
69.55
72.72
13
A
THR
621
74.75
-7.45
13
A
GLU
625
73.90
100.97
13
A
ALA
628
-136.91
-103.61
13
A
LEU
629
-126.79
-146.84
13
A
LEU
630
-61.70
-71.90
13
A
MET
639
-59.03
107.16
13
A
SER
656
-69.79
-178.19
14
A
GLU
625
71.06
-176.96
14
A
SER
626
69.69
-64.46
14
A
ALA
628
-55.69
-92.29
14
A
LEU
629
-130.44
-78.28
14
A
LEU
630
-133.09
-46.64
14
A
HIS
663
65.69
65.39
14
A
PRO
679
-40.34
109.51
15
A
GLU
625
62.34
126.10
15
A
SER
626
-144.84
-46.05
15
A
ALA
628
-155.90
-97.96
15
A
LEU
629
-117.81
-132.86
15
A
LEU
630
-91.57
-72.24
15
A
LYS
654
-57.42
104.24
16
A
SER
604
-60.79
-175.66
16
A
THR
621
69.44
170.99
16
A
GLU
625
-173.01
-37.42
16
A
SER
626
75.44
163.74
16
A
ALA
628
-84.18
-105.53
16
A
LEU
629
-137.14
-83.46
16
A
LYS
654
-58.43
106.35
16
A
HIS
663
70.58
55.97
17
A
SER
604
-60.83
-175.88
17
A
THR
621
-56.92
177.32
17
A
GLU
625
178.02
-154.20
17
A
LEU
629
-119.64
-87.14
17
A
LEU
630
-131.79
-41.93
17
A
LYS
654
-59.03
102.56
17
A
HIS
663
71.89
60.82
17
A
PRO
679
-41.36
109.31
17
B
GLU
944
60.72
177.49
18
A
GLU
625
175.75
-171.52
18
A
ALA
628
-139.70
-75.94
18
A
LEU
629
-119.17
-127.68
18
A
MET
639
-58.47
109.01
18
A
HIS
663
66.91
60.04
18
B
GLU
944
-59.01
-172.26
19
A
THR
621
61.00
153.92
19
A
GLU
625
68.49
158.32
19
A
ALA
628
-168.80
-74.19
19
A
LEU
629
-135.53
-77.74
19
A
LEU
630
-131.06
-45.10
19
A
HIS
663
62.30
65.08
20
A
GLU
625
175.62
-179.13
20
A
ALA
628
-92.59
-60.98
20
A
LEU
629
-118.56
-77.41
20
A
LEU
630
-138.14
-52.32
20
A
LYS
654
-56.12
103.11
Solution Structure of the RIM1alpha PDZ Domain in Complex with an ELKS1b C-terminal Peptide
1
N
N
2
N
N
A
SER
656
A
SER
65
HELX_P
A
VAL
661
A
VAL
70
1
1
6
A
THR
682
A
THR
91
HELX_P
A
SER
695
A
SER
104
1
2
14
ENDOCYTOSIS/EXOCYTOSIS
PDZ domain, complex, ENDOCYTOSIS-EXOCYTOSIS COMPLEX
RIMS1_RAT
UNP
1
597
Q9JIR4
HPVTWQPSKEGDRLIGRVILNKRTTMPKESGALLGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGK
PLPGATNEEVYNIILESKSEPQVEIIVSR
RB6I2_RAT
UNP
2
939
Q811U3
DQDEEEGIWA
597
705
1ZUB
597
705
Q9JIR4
A
1
6
114
939
948
1ZUB
939
948
Q811U3
B
2
2
11
1
cloning artifact
GLY
592
1ZUB
A
Q9JIR4
UNP
1
1
cloning artifact
SER
593
1ZUB
A
Q9JIR4
UNP
2
1
cloning artifact
PRO
594
1ZUB
A
Q9JIR4
UNP
3
1
cloning artifact
GLY
595
1ZUB
A
Q9JIR4
UNP
4
1
cloning artifact
SER
596
1ZUB
A
Q9JIR4
UNP
5
2
cloning artifact
CYS
938
1ZUB
B
Q811U3
UNP
1
5
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
THR
600
A
THR
9
A
PRO
603
A
PRO
12
A
LEU
610
A
LEU
19
A
LEU
616
A
LEU
25
A
VAL
699
A
VAL
108
A
VAL
703
A
VAL
112
A
VAL
670
A
VAL
79
A
TRP
673
A
TRP
82
A
LYS
676
A
LYS
85
A
PRO
677
A
PRO
86
A
LEU
632
A
LEU
41
A
GLY
636
A
GLY
45
A
ALA
647
A
ALA
56
A
VAL
652
A
VAL
61
1
P 1